From 495e8f5fe0aa431b4525c453e402bb9a64d30d40 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 27 Jul 2015 09:24:48 -0400 Subject: [PATCH 001/135] Fixs bug classify.rf --- source/commands/classifyrfsharedcommand.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/commands/classifyrfsharedcommand.cpp b/source/commands/classifyrfsharedcommand.cpp index e61559b4..49881f8e 100755 --- a/source/commands/classifyrfsharedcommand.cpp +++ b/source/commands/classifyrfsharedcommand.cpp @@ -346,7 +346,7 @@ void ClassifyRFSharedCommand::processSharedAndDesignData(vector treatmentToIntMap; map intToTreatmentMap; - vector groups = designMap.getNamesGroups(); + vector groups = designMap.getCategory(); for (int i = 0; i < groups.size(); i++) { string treatmentName = groups[i]; treatmentToIntMap[treatmentName] = i; From e6fb92264f747b0c14b7d75da28acbe4e40bb5c0 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 27 Jul 2015 13:20:48 -0400 Subject: [PATCH 002/135] Merging 1.36.1 changes into branch --- source/commands/classifyrfsharedcommand.cpp | 0 1 file changed, 0 insertions(+), 0 deletions(-) mode change 100755 => 100644 source/commands/classifyrfsharedcommand.cpp diff --git a/source/commands/classifyrfsharedcommand.cpp b/source/commands/classifyrfsharedcommand.cpp old mode 100755 new mode 100644 From 92677405aea8482d611da5f81245924cb608d2a2 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 27 Jul 2015 14:17:44 -0400 Subject: [PATCH 003/135] Experiments unit testing private class functions Issue #124 --- Mothur.xcodeproj/project.pbxproj | 12 +++++++---- TestMothur/main.cpp | 21 ++++++++++++++++++++ .../testsequence.cpp | 5 +++-- TestMothur/testsequence.h | 23 ++++++++++++++++++++++ source/datastructures/sequence.hpp | 5 +++++ 5 files changed, 60 insertions(+), 6 deletions(-) rename TestMothur/{testdatastructures => testcontainers}/testsequence.cpp (95%) create mode 100644 TestMothur/testsequence.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index a2651963..b566a0dc 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -11,7 +11,6 @@ 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; 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}; 48C51DF01A76B888004ECDF1 /* fastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DEF1A76B888004ECDF1 /* fastqread.cpp */; }; 48C51DF31A793EFE004ECDF1 /* kmeralign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */; }; + 48C728651B66A77800D40830 /* testsequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728641B66A77800D40830 /* testsequence.cpp */; }; + 48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; }; 48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48E981CF189C38FB0042BE9D /* (null) in Sources */ = {isa = PBXBuildFile; }; @@ -791,7 +792,6 @@ 481FB5191AC0A63E0076CFF3 /* TestMothur */ = {isa = PBXFileReference; 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sourceTree = ""; }; + 48C728641B66A77800D40830 /* testsequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsequence.cpp; path = testcontainers/testsequence.cpp; sourceTree = ""; }; + 48C728661B66A79400D40830 /* testsequence.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = testsequence.h; sourceTree = ""; }; 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefilecommand.cpp; path = source/commands/makefilecommand.cpp; sourceTree = ""; }; 48DB37B21B3B27E000C372A4 /* makefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefilecommand.h; path = source/commands/makefilecommand.h; sourceTree = ""; }; 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = completelinkage.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/completelinkage.cpp; sourceTree = ""; }; @@ -1715,7 +1717,8 @@ 481FB5221AC0AA010076CFF3 /* testcontainers */ = { isa = PBXGroup; children = ( - 481FB5231AC0AA430076CFF3 /* testsequence.cpp */, + 48C728641B66A77800D40830 /* testsequence.cpp */, + 48C728661B66A79400D40830 /* testsequence.h */, ); name = testcontainers; sourceTree = ""; @@ -2537,6 +2540,7 @@ isa = PBXSourcesBuildPhase; buildActionMask = 2147483647; files = ( + 48C728651B66A77800D40830 /* testsequence.cpp in Sources */, 481FB5E51AC1B77E0076CFF3 /* nocommands.cpp in Sources */, 481FB5F61AC1B77E0076CFF3 /* quitcommand.cpp in Sources */, 481FB52C1AC1B0A70076CFF3 /* commandfactory.cpp in Sources */, @@ -2757,7 +2761,6 @@ 481FB5E91AC1B77E0076CFF3 /* otuhierarchycommand.cpp in Sources */, 481FB5351AC1B5D90076CFF3 /* fasta.cpp in Sources */, 481FB6321AC1B7EA0076CFF3 /* groupmap.cpp in Sources */, - 481FB5251AC0AA430076CFF3 /* testsequence.cpp in Sources */, 481FB5FF1AC1B7970076CFF3 /* removeseqscommand.cpp in Sources */, 481FB6771AC1B88F0076CFF3 /* readcluster.cpp in Sources */, 481FB5831AC1B6FF0076CFF3 /* ccode.cpp in Sources */, @@ -2838,6 +2841,7 @@ 481FB60F1AC1B7AC0076CFF3 /* sortseqscommand.cpp in Sources */, 481FB67D1AC1B88F0076CFF3 /* treereader.cpp in Sources */, 481FB6131AC1B7AC0076CFF3 /* sracommand.cpp in Sources */, + 48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */, 481FB5541AC1B64C0076CFF3 /* prng.cpp in Sources */, 481FB6691AC1B8520076CFF3 /* abstractdecisiontree.cpp in Sources */, 481FB57B1AC1B6EA0076CFF3 /* structeuclidean.cpp in Sources */, diff --git a/TestMothur/main.cpp b/TestMothur/main.cpp index a323ecb2..1c86ead6 100644 --- a/TestMothur/main.cpp +++ b/TestMothur/main.cpp @@ -6,6 +6,27 @@ // Copyright (c) 2015 Schloss Lab. All rights reserved. // + +//***********************************************************// +//***********************************************************// +//***********************************************************// +//***********************************************************// +/* + +To compile TestMothur you need to uncomment + + //CommandFactory* CommandFactory::_uniqueInstance; in commandfactory.cpp + + //MothurOut* MothurOut::_uniqueInstance; in mothurout.cpp + + //ReferenceDB* ReferenceDB::myInstance; in referencedb.cpp + + */ +//***********************************************************// +//***********************************************************// +//***********************************************************// +//***********************************************************// + #define CATCH_CONFIG_MAIN // This tells Catch to provide a main() - only do this in one cpp file #include "catch.hpp" diff --git a/TestMothur/testdatastructures/testsequence.cpp b/TestMothur/testcontainers/testsequence.cpp similarity index 95% rename from TestMothur/testdatastructures/testsequence.cpp rename to TestMothur/testcontainers/testsequence.cpp index e543587e..3498a574 100644 --- a/TestMothur/testdatastructures/testsequence.cpp +++ b/TestMothur/testcontainers/testsequence.cpp @@ -7,10 +7,11 @@ // #include "catch.hpp" -#include "sequence.hpp" +#include "testsequence.h" TEST_CASE("Testing Sequence Class") { Sequence seq; + TestSequence seq2; SECTION("test constructor - string, string") { INFO("Using TestSeq, atgcatgc") // Only appears on a FAIL @@ -46,7 +47,7 @@ TEST_CASE("Testing Sequence Class") { SECTION("test initialize") { INFO("No data") // Only appears on a FAIL - seq.initialize(); + seq2.initialize(); CAPTURE(seq.getUnaligned()); // Displays this variable on a FAIL CHECK(seq.getUnaligned() == ""); diff --git a/TestMothur/testsequence.h b/TestMothur/testsequence.h new file mode 100644 index 00000000..5ffba630 --- /dev/null +++ b/TestMothur/testsequence.h @@ -0,0 +1,23 @@ +// +// testsequence.h +// Mothur +// +// Created by Sarah Westcott on 7/27/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef Mothur_testsequence_h +#define Mothur_testsequence_h +#include "sequence.hpp" + +class TestSequence : public Sequence { + + public: + + //using Sequence::Sequence; + using Sequence::initialize; + +}; + + +#endif diff --git a/source/datastructures/sequence.hpp b/source/datastructures/sequence.hpp index 308fc3be..84da20ea 100644 --- a/source/datastructures/sequence.hpp +++ b/source/datastructures/sequence.hpp @@ -25,6 +25,11 @@ class Sequence { public: + + #ifdef UNIT_TEST + friend class TestSequence; + #endif + Sequence(); Sequence(string, string); Sequence(ifstream&); From 31cb563b2cb3aa455c6faabcea349f7217db84d4 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 29 Jul 2015 14:54:21 -0400 Subject: [PATCH 004/135] Adds count file to merge.groups Issue #88 #133 --- source/commands/mergegroupscommand.cpp | 137 ++++++++++++++++++++++++++++++--- source/commands/mergegroupscommand.h | 3 +- 2 files changed, 129 insertions(+), 11 deletions(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index 76680260..2cce3e1d 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -9,12 +9,14 @@ #include "mergegroupscommand.h" #include "sharedutilities.h" +#include "counttable.h" //********************************************************************************************************************** vector MergeGroupsCommand::setParameters(){ try { CommandParameter pshared("shared", "InputTypes", "", "", "none", "sharedGroup", "none","shared",false,false,true); parameters.push_back(pshared); - CommandParameter pgroup("group", "InputTypes", "", "", "none", "sharedGroup", "none","group",false,false,true); parameters.push_back(pgroup); + CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "sharedGroup", "none","group",false,false,true); parameters.push_back(pgroup); + CommandParameter pcount("count", "InputTypes", "", "", "CountGroup", "sharedGroup", "none","count",false,false,true); parameters.push_back(pcount); CommandParameter pdesign("design", "InputTypes", "", "", "none", "none", "none","",false,true,true); parameters.push_back(pdesign); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pgroups("groups", "String", "", "", "", "", "","",false,false); parameters.push_back(pgroups); @@ -35,12 +37,9 @@ vector MergeGroupsCommand::setParameters(){ string MergeGroupsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The merge.groups command reads a shared or group file and a design file and merges the groups that are in the same grouping in the design file.\n"; - helpString += "The merge.groups command outputs a .shared file. \n"; - helpString += "The merge.groups command parameters are shared, group, groups, label and design. The design parameter is required.\n"; + helpString += "The merge.groups command input files are shared, group, countfile and a design file. It reads the design file and merges the groups in the other files accordingly.\n"; helpString += "The design parameter allows you to assign your groups to sets. It is required. \n"; - helpString += "The design file looks like the group file. It is a 2 column tab delimited file, where the first column is the group name and the second column is the set the group belongs to.\n"; - helpString += "The groups parameter allows you to specify which of the groups in your shared or group file you would like included. The group names are separated by dashes.\n"; + helpString += "The groups parameter allows you to specify which of the groups in your shared or group file you would like included. The group names are separated by dashes. By default all groups are selected.\n"; helpString += "The label parameter allows you to select what distance levels you would like, and are also separated by dashes.\n"; helpString += "The merge.groups command should be in the following format: merge.groups(design=yourDesignFile, shared=yourSharedFile).\n"; helpString += "Example merge.groups(design=temp.design, groups=A-B-C, shared=temp.shared).\n"; @@ -60,7 +59,8 @@ string MergeGroupsCommand::getOutputPattern(string type) { string pattern = ""; if (type == "shared") { pattern = "[filename],merge,[extension]"; } - else if (type == "group") { pattern = "[filename],merge,[extension]"; } + else if (type == "group") { pattern = "[filename],merge,[extension]"; } + else if (type == "count") { pattern = "[filename],merge,[extension]"; } else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } return pattern; @@ -78,6 +78,7 @@ MergeGroupsCommand::MergeGroupsCommand(){ vector tempOutNames; outputTypes["shared"] = tempOutNames; outputTypes["group"] = tempOutNames; + outputTypes["count"] = tempOutNames; } catch(exception& e) { m->errorOut(e, "MergeGroupsCommand", "MetaStatsCommand"); @@ -113,6 +114,7 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { vector tempOutNames; outputTypes["shared"] = tempOutNames; outputTypes["group"] = tempOutNames; + outputTypes["count"] = tempOutNames; //if the user changes the output directory command factory will send this info to us in the output parameter outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; } @@ -145,6 +147,14 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["group"] = inputDir + it->second; } } + + it = parameters.find("count"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["count"] = inputDir + it->second; } + } } @@ -166,7 +176,12 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { groupfile = validParameter.validFile(parameters, "group", true); if (groupfile == "not open") { abort = true; groupfile = ""; } else if (groupfile == "not found") { groupfile = ""; } - else { m->setGroupFile(groupfile); } + else { m->setGroupFile(groupfile); } + + countfile = validParameter.validFile(parameters, "count", true); + if (countfile == "not open") { abort = true; countfile = ""; } + else if (countfile == "not found") { countfile = ""; } + else { m->setCountTableFile(countfile); } //check for optional parameter and set defaults // ...at some point should added some additional type checking... @@ -181,8 +196,12 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { if (groups == "not found") { groups = "all"; } m->splitAtDash(groups, Groups); m->setGroups(Groups); + + if ((groupfile != "") && (countfile != "")) { + m->mothurOut("[ERROR]: you may only use one of the following: group or count."); m->mothurOutEndLine(); abort=true; + } - if ((sharedfile == "") && (groupfile == "")) { + if ((sharedfile == "") && (groupfile == "") && (countfile == "")) { //give priority to group, then shared groupfile = m->getGroupFile(); if (groupfile != "") { m->mothurOut("Using " + groupfile + " as input file for the group parameter."); m->mothurOutEndLine(); } @@ -190,7 +209,11 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { sharedfile = m->getSharedFile(); if (sharedfile != "") { m->mothurOut("Using " + sharedfile + " as input file for the shared parameter."); m->mothurOutEndLine(); } else { - m->mothurOut("You have no current groupfile or sharedfile and one is required."); m->mothurOutEndLine(); abort = true; + countfile = m->getCountTableFile(); + if (countfile != "") { m->mothurOut("Using " + countfile + " as input file for the count parameter."); m->mothurOutEndLine(); } + else { + m->mothurOut("You have no current groupfile, countfile or sharedfile and one is required."); m->mothurOutEndLine(); abort = true; + } } } } @@ -213,6 +236,7 @@ int MergeGroupsCommand::execute(){ if (groupfile != "") { processGroupFile(designMap); } if (sharedfile != "") { processSharedFile(designMap); } + if (countfile != "") { processCountFile(designMap); } //reset groups parameter m->clearGroups(); @@ -460,5 +484,98 @@ int MergeGroupsCommand::processGroupFile(DesignMap*& designMap){ } //********************************************************************************************************************** +int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ + try { + CountTable countTable; + if (!countTable.testGroups(countfile)) { m->mothurOut("[ERROR]: your countfile contains no group information, please correct.\n"); m->control_pressed = true; return 0; } + + //read countTable + countTable.readTable(countfile, true, false); + + //fill Groups - checks for "all" and for any typo groups + SharedUtil util; + vector nameGroups = countTable.getNamesOfGroups(); + util.setGroups(Groups, nameGroups); + + vector dnamesGroups = designMap->getNamesGroups(); + + //sanity check + bool error = false; + if (nameGroups.size() == dnamesGroups.size()) { //at least there are the same number + //is every group in counttable also in designmap + for (int i = 0; i < nameGroups.size(); i++) { + if (m->control_pressed) { break; } + if (!m->inUsersGroups(nameGroups[i], dnamesGroups)) { error = true; break; } + } + + } + if (error) { m->mothurOut("[ERROR]: Your countfile does not contain the same groups as your design file, please correct\n"); m->control_pressed = true; return 0; } + + //user selected groups - remove some groups from table + if (Groups.size() != nameGroups.size()) { + for (int i = 0; i < nameGroups.size(); i++) { + if (!m->inUsersGroups(nameGroups[i], Groups)) { countTable.removeGroup(nameGroups[i]); } + } + } + //ask again in case order changed + nameGroups = countTable.getNamesOfGroups(); + int numGroups = nameGroups.size(); + + //create new table + CountTable newTable; + vector treatments = designMap->getCategory(); + map clearedMap; + for (int i = 0; i < treatments.size(); i++) { + newTable.addGroup(treatments[i]); + clearedMap[treatments[i]] = 0; + } + treatments = newTable.getNamesOfGroups(); + + vector namesOfSeqs = countTable.getNamesOfSeqs(); + for (int i = 0; i < namesOfSeqs.size(); i++) { + + if (m->control_pressed) { break; } + + vector thisSeqsCounts = countTable.getGroupCounts(namesOfSeqs[i]); + map thisSeqsMap = clearedMap; + + for (int j = 0; j < numGroups; j++) { + if (thisSeqsCounts[j] != 0) { //abundance for this group, not sure if this would run faster without if. Time to lookup treatment on counts we don't care about vs. asking if each time. + thisSeqsMap[designMap->get(nameGroups[j])] += thisSeqsCounts[j]; // + } + } + + //create new counts for seq for new table + vector newCounts; + for (int j = 0; j < treatments.size(); j++){ + newCounts.push_back(thisSeqsMap[treatments[j]]); //order matters, add in count for each treatment in new table. + } + + //add seq to new table + newTable.push_back(namesOfSeqs[i], newCounts); + } + + if (error) { m->control_pressed = true; return 0; } + + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(countfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(countfile)); + variables["[extension]"] = m->getExtension(countfile); + string outputFileName = getOutputFileName("count", variables); + outputTypes["count"].push_back(outputFileName); outputNames.push_back(outputFileName); + + newTable.printTable(outputFileName); + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "MergeGroupsCommand", "processCountFile"); + exit(1); + } +} +//********************************************************************************************************************** + diff --git a/source/commands/mergegroupscommand.h b/source/commands/mergegroupscommand.h index 15c4d91e..5e535f2b 100644 --- a/source/commands/mergegroupscommand.h +++ b/source/commands/mergegroupscommand.h @@ -41,12 +41,13 @@ class MergeGroupsCommand : public Command { bool abort, allLines, pickedGroups; set labels; //holds labels to be used - string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile; + string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile, countfile; vector Groups, outputNames; int process(vector&, ofstream&); int processSharedFile(DesignMap*&); int processGroupFile(DesignMap*&); + int processCountFile(DesignMap*&); }; #endif From 30bb10a8237fb296815f65a3314c5b9afaf17c89 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 29 Jul 2015 15:16:34 -0400 Subject: [PATCH 005/135] Adds shell for unit tests for merge.groups command Issue #124 --- Mothur.xcodeproj/project.pbxproj | 6 +++++ TestMothur/testcommands/testmergegroupscommand.cpp | 19 ++++++++++++++++ TestMothur/testcommands/testmergegroupscommand.h | 26 ++++++++++++++++++++++ source/commands/mergegroupscommand.h | 4 ++++ 4 files changed, 55 insertions(+) create mode 100644 TestMothur/testcommands/testmergegroupscommand.cpp create mode 100644 TestMothur/testcommands/testmergegroupscommand.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index b566a0dc..929b3203 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -384,6 +384,7 @@ 48C51DF31A793EFE004ECDF1 /* kmeralign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */; }; 48C728651B66A77800D40830 /* testsequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728641B66A77800D40830 /* testsequence.cpp */; }; 48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; }; + 48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728681B69598400D40830 /* testmergegroupscommand.cpp */; }; 48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48E981CF189C38FB0042BE9D /* (null) in Sources */ = {isa = PBXBuildFile; }; @@ -814,6 +815,8 @@ 48C51DF21A793EFE004ECDF1 /* kmeralign.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = kmeralign.h; path = source/datastructures/kmeralign.h; sourceTree = ""; }; 48C728641B66A77800D40830 /* testsequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsequence.cpp; path = testcontainers/testsequence.cpp; sourceTree = ""; }; 48C728661B66A79400D40830 /* testsequence.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = testsequence.h; sourceTree = ""; }; + 48C728681B69598400D40830 /* testmergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testmergegroupscommand.cpp; path = testcommands/testmergegroupscommand.cpp; sourceTree = ""; }; + 48C728691B69598400D40830 /* testmergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testmergegroupscommand.h; path = testcommands/testmergegroupscommand.h; sourceTree = ""; }; 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefilecommand.cpp; path = source/commands/makefilecommand.cpp; sourceTree = ""; }; 48DB37B21B3B27E000C372A4 /* makefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefilecommand.h; path = source/commands/makefilecommand.h; sourceTree = ""; }; 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = completelinkage.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/completelinkage.cpp; sourceTree = ""; }; @@ -1709,6 +1712,8 @@ 481FB5211AC0A9B40076CFF3 /* testcommands */ = { isa = PBXGroup; children = ( + 48C728691B69598400D40830 /* testmergegroupscommand.h */, + 48C728681B69598400D40830 /* testmergegroupscommand.cpp */, 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */, ); name = testcommands; @@ -2710,6 +2715,7 @@ 481FB5451AC1B6170076CFF3 /* gower.cpp in Sources */, 481FB5AC1AC1B7300076CFF3 /* corraxescommand.cpp in Sources */, 481FB5A11AC1B71B0076CFF3 /* classifytreecommand.cpp in Sources */, + 48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */, 481FB62F1AC1B7EA0076CFF3 /* fastqread.cpp in Sources */, 481FB6901AC1BA9E0076CFF3 /* knn.cpp in Sources */, 481FB5941AC1B71B0076CFF3 /* catchallcommand.cpp in Sources */, diff --git a/TestMothur/testcommands/testmergegroupscommand.cpp b/TestMothur/testcommands/testmergegroupscommand.cpp new file mode 100644 index 00000000..01de3838 --- /dev/null +++ b/TestMothur/testcommands/testmergegroupscommand.cpp @@ -0,0 +1,19 @@ +// +// testmergegroupscommand.cpp +// Mothur +// +// Created by Sarah Westcott on 7/29/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "testmergegroupscommand.h" +#include "catch.hpp" + + +TEST_CASE("Testing MergeGroupsCommand Class") { + TestMergeGroupsCommand tMergeCommand; + + //how do we unit test this?? + //each private function reads files processes them and writes new ones. +} + diff --git a/TestMothur/testcommands/testmergegroupscommand.h b/TestMothur/testcommands/testmergegroupscommand.h new file mode 100644 index 00000000..ca20b19d --- /dev/null +++ b/TestMothur/testcommands/testmergegroupscommand.h @@ -0,0 +1,26 @@ +// +// testmergegroupscommand.h +// Mothur +// +// Created by Sarah Westcott on 7/29/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testmergegroupscommand__ +#define __Mothur__testmergegroupscommand__ + +#include "mergegroupscommand.h" + +class TestMergeGroupsCommand : public MergeGroupsCommand { + +public: + + //private functions + using MergeGroupsCommand::process; + using MergeGroupsCommand::processSharedFile; + using MergeGroupsCommand::processGroupFile; + using MergeGroupsCommand::processCountFile; + +}; + +#endif /* defined(__Mothur__testmergegroupscommand__) */ diff --git a/source/commands/mergegroupscommand.h b/source/commands/mergegroupscommand.h index 5e535f2b..a4ade88d 100644 --- a/source/commands/mergegroupscommand.h +++ b/source/commands/mergegroupscommand.h @@ -16,6 +16,10 @@ #include "designmap.h" class MergeGroupsCommand : public Command { + +#ifdef UNIT_TEST + friend class TestMergeGroupsCommand; +#endif public: MergeGroupsCommand(string); From 7dceb3edfd298e310976d6f55436e697d8271f85 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 30 Jul 2015 10:50:17 -0400 Subject: [PATCH 006/135] Clears up zlib OS version in makefile --- makefile | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/makefile b/makefile index f03fd3d3..f0d02191 100644 --- a/makefile +++ b/makefile @@ -69,11 +69,14 @@ ifeq ($(strip $(USEBOOST)),yes) CXXFLAGS += -DUSE_BOOST - LIBS += \ - ${BOOST_LIBRARY_DIR}/libboost_iostreams.a \ - ${BOOST_LIBRARY_DIR}/zlib.a + LIBS += ${BOOST_LIBRARY_DIR}/libboost_iostreams.a + + #if mac + LIBS += ${BOOST_LIBRARY_DIR}/zlib.a + + #if linux or windows + #LIBS += ${BOOST_LIBRARY_DIR}/libz.a - #if linux or windows then ${BOOST_LIBRARY_DIR}/libz.a endif From 277ddd311b53a0d2b38579f147e525067d455d90 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 30 Jul 2015 11:24:46 -0400 Subject: [PATCH 007/135] Adds phylip and column options to get.groups Issue #79 --- source/commands/getgroupscommand.cpp | 265 ++++++++++++++++++++++++++++++++++- source/commands/getgroupscommand.h | 4 +- 2 files changed, 265 insertions(+), 4 deletions(-) diff --git a/source/commands/getgroupscommand.cpp b/source/commands/getgroupscommand.cpp index d7d440f0..7233d728 100644 --- a/source/commands/getgroupscommand.cpp +++ b/source/commands/getgroupscommand.cpp @@ -25,6 +25,8 @@ vector GetGroupsCommand::setParameters(){ CommandParameter pdesign("design", "InputTypes", "", "", "none", "sharedGroup", "FNGLT","design",false,false, true); parameters.push_back(pdesign); CommandParameter plist("list", "InputTypes", "", "", "none", "none", "FNGLT","list",false,false, true); parameters.push_back(plist); CommandParameter ptaxonomy("taxonomy", "InputTypes", "", "", "none", "none", "FNGLT","taxonomy",false,false, true); parameters.push_back(ptaxonomy); + CommandParameter pphylip("phylip", "InputTypes", "", "", "none", "PhylipColumn", "none","phylip",false,false,true); parameters.push_back(pphylip); + CommandParameter pcolumn("column", "InputTypes", "", "", "none", "PhylipColumn", "none","column",false,false,true); parameters.push_back(pcolumn); CommandParameter paccnos("accnos", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(paccnos); CommandParameter pgroups("groups", "String", "", "", "", "", "","",false,false); parameters.push_back(pgroups); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); @@ -44,9 +46,9 @@ vector GetGroupsCommand::setParameters(){ string GetGroupsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The get.groups command selects sequences from a specfic group or set of groups from the following file types: fasta, name, group, list, taxonomy, design or shared file.\n"; + helpString += "The get.groups command selects sequences from a specfic group or set of groups from the following file types: fasta, name, group, count, list, taxonomy, design, phylip, column or shared file.\n"; helpString += "It outputs a file containing the sequences in the those specified groups, or a sharedfile containing only those groups.\n"; - helpString += "The get.groups command parameters are accnos, fasta, name, group, list, taxonomy, shared, design and groups. The group or count parameter is required, unless you have a current group or count file, or are using a shared file.\n"; + helpString += "The get.groups command parameters are accnos, fasta, name, group, count, list, taxonomy, shared, design, phylip, column and groups. The group or count parameter is required, unless you have a current group or count file, or are using a shared file.\n"; helpString += "You must also provide an accnos containing the list of groups to get or set the groups parameter to the groups you wish to select.\n"; helpString += "The groups parameter allows you to specify which of the groups in your groupfile you would like. You can separate group names with dashes.\n"; helpString += "The get.groups command should be in the following format: get.groups(accnos=yourAccnos, fasta=yourFasta, group=yourGroupFile).\n"; @@ -70,6 +72,8 @@ string GetGroupsCommand::getOutputPattern(string type) { else if (type == "name") { pattern = "[filename],pick,[extension]"; } else if (type == "group") { pattern = "[filename],pick,[extension]"; } else if (type == "count") { pattern = "[filename],pick,[extension]"; } + else if (type == "phylip") { pattern = "[filename],pick,[extension]"; } + else if (type == "column") { pattern = "[filename],pick,[extension]"; } else if (type == "list") { pattern = "[filename],[tag],pick,[extension]"; } else if (type == "shared") { pattern = "[filename],[tag],pick,[extension]"; } else if (type == "design") { pattern = "[filename],pick,[extension]"; } @@ -96,6 +100,8 @@ GetGroupsCommand::GetGroupsCommand(){ outputTypes["shared"] = tempOutNames; outputTypes["design"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["phylip"] = tempOutNames; + outputTypes["column"] = tempOutNames; } catch(exception& e) { m->errorOut(e, "GetGroupsCommand", "GetGroupsCommand"); @@ -135,6 +141,8 @@ GetGroupsCommand::GetGroupsCommand(string option) { outputTypes["shared"] = tempOutNames; outputTypes["design"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["phylip"] = tempOutNames; + outputTypes["column"] = tempOutNames; //if the user changes the output directory command factory will send this info to us in the output parameter @@ -216,6 +224,23 @@ GetGroupsCommand::GetGroupsCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["count"] = inputDir + it->second; } } + + it = parameters.find("phylip"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["phylip"] = inputDir + it->second; } + } + + it = parameters.find("column"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["column"] = inputDir + it->second; } + } + } @@ -230,6 +255,16 @@ GetGroupsCommand::GetGroupsCommand(string option) { else if (fastafile == "not found") { fastafile = ""; } else { m->setFastaFile(fastafile); } + phylipfile = validParameter.validFile(parameters, "phylip", true); + if (phylipfile == "not open") { phylipfile = ""; abort = true; } + else if (phylipfile == "not found") { phylipfile = ""; } + else { m->setPhylipFile(phylipfile); } + + columnfile = validParameter.validFile(parameters, "column", true); + if (columnfile == "not open") { columnfile = ""; abort = true; } + else if (columnfile == "not found") { columnfile = ""; } + else { m->setColumnFile(columnfile); } + namefile = validParameter.validFile(parameters, "name", true); if (namefile == "not open") { namefile = ""; abort = true; } else if (namefile == "not found") { namefile = ""; } @@ -323,7 +358,7 @@ GetGroupsCommand::GetGroupsCommand(string option) { if ((accnosfile == "") && (Groups.size() == 0)) { m->mothurOut("You must provide an accnos file or specify groups using the groups parameter."); m->mothurOutEndLine(); abort = true; } - if ((fastafile == "") && (namefile == "") && (countfile == "") && (groupfile == "") && (designfile == "") && (sharedfile == "") && (listfile == "") && (taxfile == "")) { m->mothurOut("You must provide at least one of the following: fasta, name, taxonomy, group, shared, design, count or list."); m->mothurOutEndLine(); abort = true; } + if ((phylipfile == "") && (columnfile == "") && (fastafile == "") && (namefile == "") && (countfile == "") && (groupfile == "") && (designfile == "") && (sharedfile == "") && (listfile == "") && (taxfile == "")) { m->mothurOut("You must provide at least one of the following: fasta, name, taxonomy, group, shared, design, count, phylip, column or list."); m->mothurOutEndLine(); abort = true; } if (((groupfile == "") && (countfile == "")) && ((namefile != "") || (fastafile != "") || (listfile != "") || (taxfile != ""))) { m->mothurOut("If using a fasta, name, taxonomy, group or list, then you must provide a group or count file."); m->mothurOutEndLine(); abort = true; } if (countfile == "") { @@ -396,6 +431,8 @@ int GetGroupsCommand::execute(){ if (taxfile != "") { readTax(); } if (sharedfile != "") { readShared(); } if (designfile != "") { readDesign(); } + if (phylipfile != "") { readPhylip(); } + if (columnfile != "") { readColumn(); } if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } @@ -447,6 +484,16 @@ int GetGroupsCommand::execute(){ if (itTypes != outputTypes.end()) { if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setCountTableFile(current); } } + + itTypes = outputTypes.find("phylip"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setPhylipFile(current); } + } + + itTypes = outputTypes.find("column"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setColumnFile(current); } + } } return 0; @@ -977,6 +1024,218 @@ int GetGroupsCommand::readTax(){ } } //********************************************************************************************************************** +int GetGroupsCommand::readPhylip(){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(phylipfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(phylipfile)); + variables["[extension]"] = m->getExtension(phylipfile); + string outputFileName = getOutputFileName("phylip", variables); + + ifstream in; + m->openInputFile(phylipfile, in); + + float distance; + int square, nseqs; + string name; + unsigned int row; + set rows; //converts names in names to a index + row = 0; + + string numTest; + in >> numTest >> name; + + if (!m->isContainingOnlyDigits(numTest)) { m->mothurOut("[ERROR]: expected a number and got " + numTest + ", quitting."); m->mothurOutEndLine(); exit(1); } + else { convert(numTest, nseqs); } + + if (names.count(name) != 0) { rows.insert(row); } + row++; + + //is the matrix square? + char d; + while((d=in.get()) != EOF){ + + if(isalnum(d)){ + square = 1; + in.putback(d); + for(int i=0;i> distance; + } + break; + } + if(d == '\n'){ + square = 0; + break; + } + } + + //map name to row/column + if(square == 0){ + for(int i=1;i> name; + if (names.count(name) != 0) { rows.insert(row); } + row++; + + for(int j=0;jcontrol_pressed) { in.close(); return 0; } + in >> distance; + } + } + } + else{ + for(int i=1;i> name; + if (names.count(name) != 0) { rows.insert(row); } + row++; + for(int j=0;jcontrol_pressed) { in.close(); return 0; } + in >> distance; + } + } + } + in.close(); + + if (m->control_pressed) { return 0; } + + //read through file only printing rows and columns of seqs in names + ifstream inPhylip; + m->openInputFile(phylipfile, inPhylip); + + inPhylip >> numTest; + + ofstream out; + m->openOutputFile(outputFileName, out); + outputTypes["phylip"].push_back(outputFileName); outputNames.push_back(outputFileName); + out << names.size() << endl; + + unsigned int count = 0; + if(square == 0){ + for(int i=0;i> name; + bool ignoreRow = false; + + if (names.count(name) == 0) { ignoreRow = true; } + else{ out << name << '\t'; count++; } + + for(int j=0;jcontrol_pressed) { inPhylip.close(); out.close(); return 0; } + inPhylip >> distance; + if (!ignoreRow) { + //is this a column we want + if(rows.count(j) != 0) { out << distance << '\t'; } + } + } + if (!ignoreRow) { out << endl; } + } + } + else{ + for(int i=0;i> name; + + bool ignoreRow = false; + + if (names.count(name) == 0) { ignoreRow = true; } + else{ out << name << '\t'; count++; } + + for(int j=0;jcontrol_pressed) { inPhylip.close(); out.close(); return 0; } + inPhylip >> distance; + if (!ignoreRow) { + //is this a column we want + if(rows.count(j) != 0) { out << distance << '\t'; } + } + } + if (!ignoreRow) { out << endl; } + } + } + inPhylip.close(); + out.close(); + + if (count == 0) { m->mothurOut("Your file does NOT contain distances related to groups or sequences listed in the accnos file."); m->mothurOutEndLine(); } + else if (count != names.size()) { + m->mothurOut("[WARNING]: Your accnos file contains " + toString(names.size()) + " groups or sequences, but I only found " + toString(count) + " of them in the phylip file."); m->mothurOutEndLine(); + //rewrite with new number + m->renameFile(outputFileName, outputFileName+".temp"); + ofstream out2; + m->openOutputFile(outputFileName, out2); + out2 << count << endl; + + ifstream in3; + m->openInputFile(outputFileName+".temp", in3); + in3 >> nseqs; m->gobble(in3); + char buffer[4096]; + while (!in3.eof()) { + in3.read(buffer, 4096); + out2.write(buffer, in3.gcount()); + } + in3.close(); + out2.close(); + m->mothurRemove(outputFileName+".temp"); + } + + m->mothurOut("Selected " + toString(count) + " groups or sequences from your phylip file."); m->mothurOutEndLine(); + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "GetGroupsCommand", "readPhylip"); + exit(1); + } +} +//********************************************************************************************************************** +int GetGroupsCommand::readColumn(){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(columnfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(columnfile)); + variables["[extension]"] = m->getExtension(columnfile); + string outputFileName = getOutputFileName("column", variables); + outputTypes["column"].push_back(outputFileName); outputNames.push_back(outputFileName); + + ofstream out; + m->openOutputFile(outputFileName, out); + + ifstream in; + m->openInputFile(columnfile, in); + + set foundNames; + string firstName, secondName; + float distance; + while (!in.eof()) { + + if (m->control_pressed) { out.close(); in.close(); return 0; } + + in >> firstName >> secondName >> distance; m->gobble(in); + + //are both names in the accnos file + if ((names.count(firstName) != 0) && (names.count(secondName) != 0)) { + out << firstName << '\t' << secondName << '\t' << distance << endl; + foundNames.insert(firstName); + foundNames.insert(secondName); + } + } + in.close(); + out.close(); + + if (foundNames.size() == 0) { m->mothurOut("Your file does NOT contain distances related to groups or sequences listed in the accnos file."); m->mothurOutEndLine(); } + else if (foundNames.size() != names.size()) { + m->mothurOut("[WARNING]: Your accnos file contains " + toString(names.size()) + " groups or sequences, but I only found " + toString(foundNames.size()) + " of them in the column file."); m->mothurOutEndLine(); + } + + m->mothurOut("Selected " + toString(foundNames.size()) + " groups or sequences from your column file."); m->mothurOutEndLine(); + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "GetGroupsCommand", "readColumn"); + exit(1); + } +} +//********************************************************************************************************************** int GetGroupsCommand::fillNames(){ try { vector seqs = groupMap->getNamesSeqs(); diff --git a/source/commands/getgroupscommand.h b/source/commands/getgroupscommand.h index f67c3658..5c22ac17 100644 --- a/source/commands/getgroupscommand.h +++ b/source/commands/getgroupscommand.h @@ -41,7 +41,7 @@ class GetGroupsCommand : public Command { map uniqueToRedundant; //if a namefile is given and the first column name is not selected //then the other files need to change the unique name in their file to match. //only add the names that need to be changed to keep the map search quick - string accnosfile, countfile, fastafile, namefile, groupfile, listfile, designfile, taxfile, outputDir, groups, sharedfile; + string accnosfile, countfile, fastafile, namefile, groupfile, listfile, designfile, taxfile, outputDir, groups, sharedfile, phylipfile, columnfile; bool abort; vector outputNames, Groups; GroupMap* groupMap; @@ -55,6 +55,8 @@ class GetGroupsCommand : public Command { int fillNames(); int readShared(); int readDesign(); + int readPhylip(); + int readColumn(); }; From 295e7a4c7247c0d26c033938b87d1456bea7b7ec Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 30 Jul 2015 15:08:35 -0400 Subject: [PATCH 008/135] Adds phylip and column to remove.groups Issue #79 --- source/commands/removedistscommand.cpp | 2 +- source/commands/removegroupscommand.cpp | 272 +++++++++++++++++++++++++++++++- source/commands/removegroupscommand.h | 4 +- 3 files changed, 273 insertions(+), 5 deletions(-) diff --git a/source/commands/removedistscommand.cpp b/source/commands/removedistscommand.cpp index 3b5521ad..51930d57 100644 --- a/source/commands/removedistscommand.cpp +++ b/source/commands/removedistscommand.cpp @@ -311,7 +311,7 @@ int RemoveDistsCommand::readPhylip(){ ofstream out; m->openOutputFile(outputFileName, out); outputTypes["phylip"].push_back(outputFileName); outputNames.push_back(outputFileName); - out << names.size() << endl; + out << (nseqs-names.size()) << endl; unsigned int count = 0; unsigned int keptCount = 0; diff --git a/source/commands/removegroupscommand.cpp b/source/commands/removegroupscommand.cpp index 14277641..1b571397 100644 --- a/source/commands/removegroupscommand.cpp +++ b/source/commands/removegroupscommand.cpp @@ -20,6 +20,8 @@ vector RemoveGroupsCommand::setParameters(){ CommandParameter pfasta("fasta", "InputTypes", "", "", "none", "none", "FNGLT","fasta",false,false,true); parameters.push_back(pfasta); CommandParameter pshared("shared", "InputTypes", "", "", "none", "sharedGroup", "none","shared",false,false,true); parameters.push_back(pshared); CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "none","name",false,false,true); parameters.push_back(pname); + CommandParameter pphylip("phylip", "InputTypes", "", "", "none", "PhylipColumn", "none","phylip",false,false,true); parameters.push_back(pphylip); + CommandParameter pcolumn("column", "InputTypes", "", "", "none", "PhylipColumn", "none","column",false,false,true); parameters.push_back(pcolumn); CommandParameter pcount("count", "InputTypes", "", "", "NameCount-CountGroup", "none", "none","count",false,false,true); parameters.push_back(pcount); CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "sharedGroup", "FNGLT","group",false,false,true); parameters.push_back(pgroup); CommandParameter pdesign("design", "InputTypes", "", "", "none", "sharedGroup", "FNGLT","design",false,false); parameters.push_back(pdesign); @@ -44,9 +46,9 @@ vector RemoveGroupsCommand::setParameters(){ string RemoveGroupsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The remove.groups command removes sequences from a specfic group or set of groups from the following file types: fasta, name, group, count, list, taxonomy, design or sharedfile.\n"; + helpString += "The remove.groups command removes sequences from a specfic group or set of groups from the following file types: fasta, name, group, count, list, taxonomy, design, phylip, column or sharedfile.\n"; helpString += "It outputs a file containing the sequences NOT in the those specified groups, or with a sharedfile eliminates the groups you selected.\n"; - helpString += "The remove.groups command parameters are accnos, fasta, name, group, list, taxonomy, shared, design and groups. The group or count parameter is required, unless you have a current group or count file or are using a sharedfile.\n"; + helpString += "The remove.groups command parameters are accnos, fasta, name, group, list, taxonomy, shared, design, phylip, column and groups. The group or count parameter is required, unless you have a current group or count file or are using a sharedfile.\n"; helpString += "You must also provide an accnos containing the list of groups to remove or set the groups parameter to the groups you wish to remove.\n"; helpString += "The groups parameter allows you to specify which of the groups in your groupfile you would like removed. You can separate group names with dashes.\n"; helpString += "The remove.groups command should be in the following format: remove.groups(accnos=yourAccnos, fasta=yourFasta, group=yourGroupFile).\n"; @@ -70,6 +72,8 @@ string RemoveGroupsCommand::getOutputPattern(string type) { else if (type == "name") { pattern = "[filename],pick,[extension]"; } else if (type == "group") { pattern = "[filename],pick,[extension]"; } else if (type == "count") { pattern = "[filename],pick,[extension]"; } + else if (type == "phylip") { pattern = "[filename],pick,[extension]"; } + else if (type == "column") { pattern = "[filename],pick,[extension]"; } else if (type == "list") { pattern = "[filename],[tag],pick,[extension]"; } else if (type == "shared") { pattern = "[filename],[tag],pick,[extension]"; } else if (type == "design") { pattern = "[filename],[tag],pick,[extension]-[filename],pick,[extension]"; } @@ -96,6 +100,8 @@ RemoveGroupsCommand::RemoveGroupsCommand(){ outputTypes["shared"] = tempOutNames; outputTypes["design"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["phylip"] = tempOutNames; + outputTypes["column"] = tempOutNames; } catch(exception& e) { m->errorOut(e, "RemoveGroupsCommand", "RemoveGroupsCommand"); @@ -135,6 +141,8 @@ RemoveGroupsCommand::RemoveGroupsCommand(string option) { outputTypes["shared"] = tempOutNames; outputTypes["design"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["phylip"] = tempOutNames; + outputTypes["column"] = tempOutNames; //if the user changes the output directory command factory will send this info to us in the output parameter @@ -216,6 +224,22 @@ RemoveGroupsCommand::RemoveGroupsCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["count"] = inputDir + it->second; } } + + it = parameters.find("phylip"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["phylip"] = inputDir + it->second; } + } + + it = parameters.find("column"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["column"] = inputDir + it->second; } + } } @@ -224,6 +248,16 @@ RemoveGroupsCommand::RemoveGroupsCommand(string option) { if (accnosfile == "not open") { accnosfile = ""; abort = true; } else if (accnosfile == "not found") { accnosfile = ""; } else { m->setAccnosFile(accnosfile); } + + phylipfile = validParameter.validFile(parameters, "phylip", true); + if (phylipfile == "not open") { phylipfile = ""; abort = true; } + else if (phylipfile == "not found") { phylipfile = ""; } + else { m->setPhylipFile(phylipfile); } + + columnfile = validParameter.validFile(parameters, "column", true); + if (columnfile == "not open") { columnfile = ""; abort = true; } + else if (columnfile == "not found") { columnfile = ""; } + else { m->setColumnFile(columnfile); } fastafile = validParameter.validFile(parameters, "fasta", true); if (fastafile == "not open") { fastafile = ""; abort = true; } @@ -324,7 +358,7 @@ RemoveGroupsCommand::RemoveGroupsCommand(string option) { if ((accnosfile == "") && (Groups.size() == 0)) { m->mothurOut("You must provide an accnos file containing group names or specify groups using the groups parameter."); m->mothurOutEndLine(); abort = true; } - if ((fastafile == "") && (namefile == "") && (countfile == "") && (groupfile == "") && (designfile == "") && (sharedfile == "") && (listfile == "") && (taxfile == "")) { m->mothurOut("You must provide at least one of the following: fasta, name, taxonomy, group, shared, design, count or list."); m->mothurOutEndLine(); abort = true; } + if ((phylipfile == "") && (columnfile == "") && (fastafile == "") && (namefile == "") && (countfile == "") && (groupfile == "") && (designfile == "") && (sharedfile == "") && (listfile == "") && (taxfile == "")) { m->mothurOut("You must provide at least one of the following: fasta, name, taxonomy, group, shared, design, count, phylip, column or list."); m->mothurOutEndLine(); abort = true; } if (((groupfile == "") && (countfile == "")) && ((namefile != "") || (fastafile != "") || (listfile != "") || (taxfile != ""))) { m->mothurOut("If using a fasta, name, taxonomy, group or list, then you must provide a group or count file."); m->mothurOutEndLine(); abort = true; } if (countfile == "") { @@ -408,6 +442,8 @@ int RemoveGroupsCommand::execute(){ if (taxfile != "") { readTax(); } if (sharedfile != "") { readShared(); } if (designfile != "") { readDesign(); } + if (phylipfile != "") { readPhylip(); } + if (columnfile != "") { readColumn(); } if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } @@ -458,6 +494,16 @@ int RemoveGroupsCommand::execute(){ if (itTypes != outputTypes.end()) { if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setCountTableFile(current); } } + + itTypes = outputTypes.find("phylip"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setPhylipFile(current); } + } + + itTypes = outputTypes.find("column"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setColumnFile(current); } + } } return 0; @@ -1035,6 +1081,226 @@ int RemoveGroupsCommand::readTax(){ } } //********************************************************************************************************************** +int RemoveGroupsCommand::readPhylip(){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(phylipfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(phylipfile)); + variables["[extension]"] = m->getExtension(phylipfile); + string outputFileName = getOutputFileName("phylip", variables); + + ifstream in; + m->openInputFile(phylipfile, in); + + float distance; + int square, nseqs; + string name; + unsigned int row; + set rows; //converts names in names to a index + row = 0; + + string numTest; + in >> numTest >> name; + + if (!m->isContainingOnlyDigits(numTest)) { m->mothurOut("[ERROR]: expected a number and got " + numTest + ", quitting."); m->mothurOutEndLine(); exit(1); } + else { convert(numTest, nseqs); } + + //not one we want to remove + if (names.count(name) == 0) { rows.insert(row); } + row++; + + //is the matrix square? + char d; + while((d=in.get()) != EOF){ + + if(isalnum(d)){ + square = 1; + in.putback(d); + for(int i=0;i> distance; + } + break; + } + if(d == '\n'){ + square = 0; + break; + } + } + + //map name to row/column + if(square == 0){ + for(int i=1;i> name; + if (names.count(name) == 0) { rows.insert(row); } + row++; + + for(int j=0;jcontrol_pressed) { in.close(); return 0; } + in >> distance; + } + } + } + else{ + for(int i=1;i> name; + if (names.count(name) == 0) { rows.insert(row); } + row++; + for(int j=0;jcontrol_pressed) { in.close(); return 0; } + in >> distance; + } + } + } + in.close(); + + if (m->control_pressed) { return 0; } + + //read through file only printing rows and columns of seqs in names + ifstream inPhylip; + m->openInputFile(phylipfile, inPhylip); + + inPhylip >> numTest; + + ofstream out; + m->openOutputFile(outputFileName, out); + outputTypes["phylip"].push_back(outputFileName); outputNames.push_back(outputFileName); + out << (nseqs-names.size()) << endl; + + unsigned int count = 0; + unsigned int keptCount = 0; + if(square == 0){ + for(int i=0;i> name; + bool ignoreRow = false; + + if (names.count(name) != 0) { ignoreRow = true; count++; } + else{ out << name; keptCount++; } + + for(int j=0;jcontrol_pressed) { inPhylip.close(); out.close(); return 0; } + inPhylip >> distance; + if (!ignoreRow) { + //is this a column we want + if(rows.count(j) != 0) { out << '\t' << distance; } + } + } + if (!ignoreRow) { out << endl; } + } + } + else{ + for(int i=0;i> name; + + bool ignoreRow = false; + + if (names.count(name) != 0) { ignoreRow = true; count++; } + else{ out << name; keptCount++; } + + for(int j=0;jcontrol_pressed) { inPhylip.close(); out.close(); return 0; } + inPhylip >> distance; + if (!ignoreRow) { + //is this a column we want + if(rows.count(j) != 0) { out << '\t' << distance; } + } + } + if (!ignoreRow) { out << endl; } + } + } + inPhylip.close(); + out.close(); + + if (keptCount == 0) { m->mothurOut("Your file contains ONLY distances related to groups or sequences listed in the accnos file."); m->mothurOutEndLine(); } + else if (count != names.size()) { + m->mothurOut("[WARNING]: Your accnos file contains " + toString(names.size()) + " groups or sequences, but I only found " + toString(count) + " of them in the phylip file."); m->mothurOutEndLine(); + //rewrite with new number + m->renameFile(outputFileName, outputFileName+".temp"); + ofstream out2; + m->openOutputFile(outputFileName, out2); + out2 << keptCount << endl; + + ifstream in3; + m->openInputFile(outputFileName+".temp", in3); + in3 >> nseqs; m->gobble(in3); + char buffer[4096]; + while (!in3.eof()) { + in3.read(buffer, 4096); + out2.write(buffer, in3.gcount()); + } + in3.close(); + out2.close(); + m->mothurRemove(outputFileName+".temp"); + } + + m->mothurOut("Removed " + toString(count) + " groups or sequences from your phylip file."); m->mothurOutEndLine(); + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "RemoveGroupsCommand", "readPhylip"); + exit(1); + } +} +//********************************************************************************************************************** +int RemoveGroupsCommand::readColumn(){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(columnfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(columnfile)); + variables["[extension]"] = m->getExtension(columnfile); + string outputFileName = getOutputFileName("column", variables); + outputTypes["column"].push_back(outputFileName); outputNames.push_back(outputFileName); + + ofstream out; + m->openOutputFile(outputFileName, out); + + ifstream in; + m->openInputFile(columnfile, in); + + set removeNames; + string firstName, secondName; + float distance; + bool wrote = false; + while (!in.eof()) { + + if (m->control_pressed) { out.close(); in.close(); return 0; } + + in >> firstName >> secondName >> distance; m->gobble(in); + + //is either names in the accnos file + if (names.count(firstName) != 0) { + removeNames.insert(firstName); + if (names.count(secondName) != 0) { removeNames.insert(secondName); } } + else if (names.count(secondName) != 0) { + removeNames.insert(secondName); + if (names.count(firstName) != 0) { removeNames.insert(firstName); } } + else { + wrote = true; + out << firstName << '\t' << secondName << '\t' << distance << endl; + } + } + in.close(); + out.close(); + + if (!wrote) { m->mothurOut("Your file contains ONLY distances related to groups or sequences listed in the accnos file."); m->mothurOutEndLine(); } + else if (removeNames.size() != names.size()) { + m->mothurOut("[WARNING]: Your accnos file contains " + toString(names.size()) + " groups or sequences, but I only found " + toString(removeNames.size()) + " of them in the column file."); m->mothurOutEndLine(); + } + + m->mothurOut("Removed " + toString(removeNames.size()) + " groups or sequences from your column file."); m->mothurOutEndLine(); + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "RemoveGroupsCommand", "readColumn"); + exit(1); + } +} +//********************************************************************************************************************** int RemoveGroupsCommand::fillNames(){ try { vector seqs = groupMap->getNamesSeqs(); diff --git a/source/commands/removegroupscommand.h b/source/commands/removegroupscommand.h index c6e9d645..b42cc4e5 100644 --- a/source/commands/removegroupscommand.h +++ b/source/commands/removegroupscommand.h @@ -37,7 +37,7 @@ class RemoveGroupsCommand : public Command { private: set names; - string accnosfile, fastafile, namefile, groupfile, countfile, designfile, listfile, taxfile, outputDir, groups, sharedfile; + string accnosfile, fastafile, namefile, groupfile, countfile, designfile, listfile, taxfile, outputDir, groups, sharedfile, phylipfile, columnfile; bool abort; vector outputNames, Groups; GroupMap* groupMap; @@ -55,6 +55,8 @@ class RemoveGroupsCommand : public Command { int readTax(); int fillNames(); int readDesign(); + int readPhylip(); + int readColumn(); }; From afffbbc46a56629b1f6ca565465e05bd8bb7c73b Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 30 Jul 2015 15:47:12 -0400 Subject: [PATCH 009/135] Roughs in unit test files for get.groups / remove.groups Issue #124 --- Mothur.xcodeproj/project.pbxproj | 16 ++++++++-- TestMothur/testcommands/testgetgroupscommand.cpp | 18 ++++++++++++ TestMothur/testcommands/testgetgroupscommand.h | 34 ++++++++++++++++++++++ TestMothur/testcommands/testmergegroupscommand.cpp | 2 +- .../testcommands/testremovegroupscommand.cpp | 18 ++++++++++++ TestMothur/testcommands/testremovegroupscommand.h | 34 ++++++++++++++++++++++ TestMothur/{ => testcontainers}/testsequence.h | 0 source/commands/getgroupscommand.h | 4 +++ source/commands/removegroupscommand.h | 4 +++ 9 files changed, 127 insertions(+), 3 deletions(-) create mode 100644 TestMothur/testcommands/testgetgroupscommand.cpp create mode 100644 TestMothur/testcommands/testgetgroupscommand.h create mode 100644 TestMothur/testcommands/testremovegroupscommand.cpp create mode 100644 TestMothur/testcommands/testremovegroupscommand.h rename TestMothur/{ => testcontainers}/testsequence.h (100%) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 929b3203..53c691fe 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -385,6 +385,8 @@ 48C728651B66A77800D40830 /* testsequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728641B66A77800D40830 /* testsequence.cpp */; }; 48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; }; 48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728681B69598400D40830 /* testmergegroupscommand.cpp */; }; + 48C728721B6AB3B900D40830 /* testremovegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */; }; + 48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */; }; 48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48E981CF189C38FB0042BE9D /* (null) in Sources */ = {isa = PBXBuildFile; }; @@ -814,9 +816,13 @@ 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmeralign.cpp; path = source/datastructures/kmeralign.cpp; sourceTree = ""; }; 48C51DF21A793EFE004ECDF1 /* kmeralign.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = kmeralign.h; path = source/datastructures/kmeralign.h; sourceTree = ""; }; 48C728641B66A77800D40830 /* testsequence.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsequence.cpp; path = testcontainers/testsequence.cpp; sourceTree = ""; }; - 48C728661B66A79400D40830 /* testsequence.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = testsequence.h; sourceTree = ""; }; 48C728681B69598400D40830 /* testmergegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testmergegroupscommand.cpp; path = testcommands/testmergegroupscommand.cpp; sourceTree = ""; }; 48C728691B69598400D40830 /* testmergegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testmergegroupscommand.h; path = testcommands/testmergegroupscommand.h; sourceTree = ""; }; + 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testremovegroupscommand.cpp; path = testcommands/testremovegroupscommand.cpp; sourceTree = ""; }; + 48C728701B6AB3B900D40830 /* testremovegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testremovegroupscommand.h; path = testcommands/testremovegroupscommand.h; sourceTree = ""; }; + 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testgetgroupscommand.cpp; path = testcommands/testgetgroupscommand.cpp; sourceTree = ""; }; + 48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testgetgroupscommand.h; path = testcommands/testgetgroupscommand.h; sourceTree = ""; }; + 48C728761B6AB4EE00D40830 /* testsequence.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testsequence.h; path = testcontainers/testsequence.h; sourceTree = ""; }; 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefilecommand.cpp; path = source/commands/makefilecommand.cpp; sourceTree = ""; }; 48DB37B21B3B27E000C372A4 /* makefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefilecommand.h; path = source/commands/makefilecommand.h; sourceTree = ""; }; 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = completelinkage.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/completelinkage.cpp; sourceTree = ""; }; @@ -1712,8 +1718,12 @@ 481FB5211AC0A9B40076CFF3 /* testcommands */ = { isa = PBXGroup; children = ( + 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */, + 48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */, 48C728691B69598400D40830 /* testmergegroupscommand.h */, 48C728681B69598400D40830 /* testmergegroupscommand.cpp */, + 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */, + 48C728701B6AB3B900D40830 /* testremovegroupscommand.h */, 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */, ); name = testcommands; @@ -1723,7 +1733,7 @@ isa = PBXGroup; children = ( 48C728641B66A77800D40830 /* testsequence.cpp */, - 48C728661B66A79400D40830 /* testsequence.h */, + 48C728761B6AB4EE00D40830 /* testsequence.h */, ); name = testcontainers; sourceTree = ""; @@ -2574,6 +2584,7 @@ 481FB6661AC1B8450076CFF3 /* progress.cpp in Sources */, 481FB6511AC1B8100076CFF3 /* engine.cpp in Sources */, 481FB5381AC1B5E30076CFF3 /* clusterclassic.cpp in Sources */, + 48C728721B6AB3B900D40830 /* testremovegroupscommand.cpp in Sources */, 481FB5EC1AC1B77E0076CFF3 /* parselistscommand.cpp in Sources */, 481FB5B61AC1B74F0076CFF3 /* filtersharedcommand.cpp in Sources */, 481FB5F81AC1B77E0076CFF3 /* rarefactsharedcommand.cpp in Sources */, @@ -2650,6 +2661,7 @@ 481FB5951AC1B71B0076CFF3 /* chimerabellerophoncommand.cpp in Sources */, 481FB68D1AC1BA9E0076CFF3 /* classify.cpp in Sources */, 481FB65F1AC1B8450076CFF3 /* myseqdist.cpp in Sources */, + 48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */, 481FB6391AC1B7EA0076CFF3 /* ordervector.cpp in Sources */, 481FB59A1AC1B71B0076CFF3 /* chimeraslayercommand.cpp in Sources */, 481FB5901AC1B71B0076CFF3 /* aligncommand.cpp in Sources */, diff --git a/TestMothur/testcommands/testgetgroupscommand.cpp b/TestMothur/testcommands/testgetgroupscommand.cpp new file mode 100644 index 00000000..391e85d8 --- /dev/null +++ b/TestMothur/testcommands/testgetgroupscommand.cpp @@ -0,0 +1,18 @@ +// +// testgetgroupscommand.cpp +// Mothur +// +// Created by Sarah Westcott on 7/30/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "testgetgroupscommand.h" +#include "catch.hpp" + + +TEST_CASE("Testing GetGroupsCommand Class") { + TestGetGroupsCommand tGetGroupsCommand; + + //how do we unit test this?? + //each private function reads files processes them and writes new ones. +} diff --git a/TestMothur/testcommands/testgetgroupscommand.h b/TestMothur/testcommands/testgetgroupscommand.h new file mode 100644 index 00000000..a895bf35 --- /dev/null +++ b/TestMothur/testcommands/testgetgroupscommand.h @@ -0,0 +1,34 @@ +// +// testgetgroupscommand.h +// Mothur +// +// Created by Sarah Westcott on 7/30/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testgetgroupscommand__ +#define __Mothur__testgetgroupscommand__ + +#include "getgroupscommand.h" + +class TestGetGroupsCommand : public GetGroupsCommand { + +public: + + using GetGroupsCommand::readFasta; + using GetGroupsCommand::readName; + using GetGroupsCommand::readGroup; + using GetGroupsCommand::readCount; + using GetGroupsCommand::readList; + using GetGroupsCommand::readTax; + using GetGroupsCommand::fillNames; + using GetGroupsCommand::readShared; + using GetGroupsCommand::readDesign; + using GetGroupsCommand::readPhylip; + using GetGroupsCommand::readColumn; + + +}; + + +#endif /* defined(__Mothur__testgetgroupscommand__) */ diff --git a/TestMothur/testcommands/testmergegroupscommand.cpp b/TestMothur/testcommands/testmergegroupscommand.cpp index 01de3838..c3964102 100644 --- a/TestMothur/testcommands/testmergegroupscommand.cpp +++ b/TestMothur/testcommands/testmergegroupscommand.cpp @@ -11,7 +11,7 @@ TEST_CASE("Testing MergeGroupsCommand Class") { - TestMergeGroupsCommand tMergeCommand; + TestMergeGroupsCommand tMergeGroupsCommand; //how do we unit test this?? //each private function reads files processes them and writes new ones. diff --git a/TestMothur/testcommands/testremovegroupscommand.cpp b/TestMothur/testcommands/testremovegroupscommand.cpp new file mode 100644 index 00000000..c439ae5d --- /dev/null +++ b/TestMothur/testcommands/testremovegroupscommand.cpp @@ -0,0 +1,18 @@ +// +// testremovegroupscommand.cpp +// Mothur +// +// Created by Sarah Westcott on 7/30/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "testremovegroupscommand.h" +#include "catch.hpp" + + +TEST_CASE("Testing RemoveGroupsCommand Class") { + TestRemoveGroupsCommand tRemoveGroupsCommand; + + //how do we unit test this?? + //each private function reads files processes them and writes new ones. +} diff --git a/TestMothur/testcommands/testremovegroupscommand.h b/TestMothur/testcommands/testremovegroupscommand.h new file mode 100644 index 00000000..f8fa94f3 --- /dev/null +++ b/TestMothur/testcommands/testremovegroupscommand.h @@ -0,0 +1,34 @@ +// +// testremovegroupscommand.h +// Mothur +// +// Created by Sarah Westcott on 7/30/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testremovegroupscommand__ +#define __Mothur__testremovegroupscommand__ + +#include "removegroupscommand.h" + +class TestRemoveGroupsCommand : public RemoveGroupsCommand { + +public: + + using RemoveGroupsCommand::readFasta; + using RemoveGroupsCommand::readName; + using RemoveGroupsCommand::readGroup; + using RemoveGroupsCommand::readCount; + using RemoveGroupsCommand::readList; + using RemoveGroupsCommand::readTax; + using RemoveGroupsCommand::fillNames; + using RemoveGroupsCommand::readShared; + using RemoveGroupsCommand::readDesign; + using RemoveGroupsCommand::readPhylip; + using RemoveGroupsCommand::readColumn; + + +}; + + +#endif /* defined(__Mothur__testremovegroupscommand__) */ diff --git a/TestMothur/testsequence.h b/TestMothur/testcontainers/testsequence.h similarity index 100% rename from TestMothur/testsequence.h rename to TestMothur/testcontainers/testsequence.h diff --git a/source/commands/getgroupscommand.h b/source/commands/getgroupscommand.h index 5c22ac17..245459c8 100644 --- a/source/commands/getgroupscommand.h +++ b/source/commands/getgroupscommand.h @@ -15,6 +15,10 @@ #include "groupmap.h" class GetGroupsCommand : public Command { + +#ifdef UNIT_TEST + friend class TestGetGroupsCommand; +#endif public: diff --git a/source/commands/removegroupscommand.h b/source/commands/removegroupscommand.h index b42cc4e5..b28fd86c 100644 --- a/source/commands/removegroupscommand.h +++ b/source/commands/removegroupscommand.h @@ -15,6 +15,10 @@ #include "groupmap.h" class RemoveGroupsCommand : public Command { + +#ifdef UNIT_TEST + friend class TestRemoveGroupsCommand; +#endif public: From 14170dc8de4ba63cfc5e4d088eb8de81028c51c9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 4 Aug 2015 17:05:56 -0400 Subject: [PATCH 010/135] Adds number to rareOtus label This fixes mothurConvert error. Closes #137 --- source/commands/filtersharedcommand.cpp | 28 +++++++++++++++++++++++++++- 1 file changed, 27 insertions(+), 1 deletion(-) diff --git a/source/commands/filtersharedcommand.cpp b/source/commands/filtersharedcommand.cpp index 017e98cc..0ee7328c 100644 --- a/source/commands/filtersharedcommand.cpp +++ b/source/commands/filtersharedcommand.cpp @@ -336,6 +336,7 @@ int FilterSharedCommand::processShared(vector& thislookup) if (m->control_pressed) { return 0; } + map labelsForRare; vector filteredLabels; vector rareCounts; rareCounts.resize(m->getGroups().size(), 0); @@ -447,6 +448,7 @@ int FilterSharedCommand::processShared(vector& thislookup) //did this OTU pass the filter criteria if (okay) { filteredLabels.push_back(saveBinLabels[i]); + labelsForRare[m->getSimpleLabel(saveBinLabels[i])] = i; for (int j = 0; j < filteredLookup.size(); j++) { //add this OTU to the filtered lookup filteredLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); } @@ -467,7 +469,31 @@ int FilterSharedCommand::processShared(vector& thislookup) filteredLookup[j]->push_back(rareCounts[j], thislookup[j]->getGroup()); } //create label for rare OTUs - filteredLabels.push_back("rareOTUs"); + map::iterator it; + int otuNum = 0; bool notDone = true; + + //find label prefix + string prefix = "Otu"; + if (filteredLabels[filteredLabels.size()-1][0] == 'P') { prefix = "PhyloType"; } + + string tempLabel = filteredLabels[filteredLabels.size()-1]; + string simpleLastLabel = m->getSimpleLabel(tempLabel); + m->mothurConvert(simpleLastLabel, otuNum); otuNum++; + while (notDone) { + if (m->control_pressed) { notDone = false; break; } + + string potentialLabel = toString(otuNum); + it = labelsForRare.find(potentialLabel); + if (it == labelsForRare.end()) { + potentialLabel = prefix + toString(otuNum); + it = labelsForRare.find(potentialLabel); + if (it == labelsForRare.end()) { + notDone = false; break; + } + } + otuNum++; + } + filteredLabels.push_back("rareOTUs" + toString(otuNum)); } } From 6dbac671d152f537a04c2e0327b72957e0340443 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Wed, 5 Aug 2015 12:29:03 -0400 Subject: [PATCH 011/135] Fix if statement when hard==T --- source/commands/sensspeccommand.cpp | 539 ++++++++++++++++++------------------ 1 file changed, 269 insertions(+), 270 deletions(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index d6c9cae9..17ba80db 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -10,7 +10,7 @@ #include "sensspeccommand.h" //********************************************************************************************************************** -vector SensSpecCommand::setParameters(){ +vector SensSpecCommand::setParameters(){ try { CommandParameter plist("list", "InputTypes", "", "", "none", "none", "none","sensspec",false,true,true); parameters.push_back(plist); CommandParameter pphylip("phylip", "InputTypes", "", "", "PhylipColumn", "PhylipColumn", "none","",false,false); parameters.push_back(pphylip); @@ -22,7 +22,7 @@ vector SensSpecCommand::setParameters(){ CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); - + vector myArray; for (int i = 0; i < parameters.size(); i++) { myArray.push_back(parameters[i].name); } return myArray; @@ -33,7 +33,7 @@ vector SensSpecCommand::setParameters(){ } } //********************************************************************************************************************** -string SensSpecCommand::getHelpString(){ +string SensSpecCommand::getHelpString(){ try { string helpString = ""; helpString += "The sens.spec command....\n"; @@ -48,10 +48,10 @@ string SensSpecCommand::getHelpString(){ string SensSpecCommand::getOutputPattern(string type) { try { string pattern = ""; - - if (type == "sensspec") { pattern = "[filename],sensspec"; } + + if (type == "sensspec") { pattern = "[filename],sensspec"; } else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } - + return pattern; } catch(exception& e) { @@ -60,9 +60,9 @@ string SensSpecCommand::getOutputPattern(string type) { } } //********************************************************************************************************************** -SensSpecCommand::SensSpecCommand(){ +SensSpecCommand::SensSpecCommand(){ try { - abort = true; calledHelp = true; + abort = true; calledHelp = true; setParameters(); vector tempOutNames; outputTypes["sensspec"] = tempOutNames; @@ -76,103 +76,103 @@ SensSpecCommand::SensSpecCommand(){ SensSpecCommand::SensSpecCommand(string option) { try { - - abort = false; calledHelp = false; + + abort = false; calledHelp = false; allLines = 1; - + //allow user to run help if(option == "help") { help(); abort = true; calledHelp = true; } else if(option == "citation") { citation(); abort = true; calledHelp = true;} - + else { string temp; - + vector myArray = setParameters(); - + OptionParser parser(option); map parameters = parser.getParameters(); - + ValidParameters validParameter; map::iterator it; - + //check to make sure all parameters are valid for command - for (it = parameters.begin(); it != parameters.end(); it++) { + for (it = parameters.begin(); it != parameters.end(); it++) { if (validParameter.isValidParameter(it->first, myArray, it->second) != true) { abort = true; } } - + //initialize outputTypes vector tempOutNames; outputTypes["sensspec"] = tempOutNames; - - //if the user changes the input directory command factory will send this info to us in the output parameter - string inputDir = validParameter.validFile(parameters, "inputdir", false); + + //if the user changes the input directory command factory will send this info to us in the output parameter + string inputDir = validParameter.validFile(parameters, "inputdir", false); if (inputDir == "not found"){ inputDir = ""; } else { string path; it = parameters.find("list"); //user has given a template file - if(it != parameters.end()){ + if(it != parameters.end()){ path = m->hasPath(it->second); //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["list"] = inputDir + it->second; } } - + it = parameters.find("phylip"); //user has given a template file - if(it != parameters.end()){ + if(it != parameters.end()){ path = m->hasPath(it->second); //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["phylip"] = inputDir + it->second; } } - + it = parameters.find("column"); //user has given a template file - if(it != parameters.end()){ + if(it != parameters.end()){ path = m->hasPath(it->second); //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["column"] = inputDir + it->second; } - } + } } //check for required parameters listFile = validParameter.validFile(parameters, "list", true); - if (listFile == "not found") { - listFile = m->getListFile(); + if (listFile == "not found") { + listFile = m->getListFile(); if (listFile != "") { m->mothurOut("Using " + listFile + " as input file for the list parameter."); m->mothurOutEndLine(); } else { m->mothurOut("You have no current list file and the list parameter is required."); m->mothurOutEndLine(); abort = true; } } - else if (listFile == "not open") { abort = true; } + else if (listFile == "not open") { abort = true; } else { m->setListFile(listFile); } - + phylipfile = validParameter.validFile(parameters, "phylip", true); if (phylipfile == "not found") { phylipfile = ""; } - else if (phylipfile == "not open") { abort = true; } + else if (phylipfile == "not open") { abort = true; } else { distFile = phylipfile; format = "phylip"; m->setPhylipFile(phylipfile); } - + columnfile = validParameter.validFile(parameters, "column", true); if (columnfile == "not found") { columnfile = ""; } - else if (columnfile == "not open") { abort = true; } + else if (columnfile == "not open") { abort = true; } else { distFile = columnfile; format = "column"; m->setColumnFile(columnfile); } - + if ((phylipfile == "") && (columnfile == "")) { //is there are current file available for either of these? //give priority to column, then phylip - columnfile = m->getColumnFile(); + columnfile = m->getColumnFile(); if (columnfile != "") { distFile = columnfile; format = "column"; m->mothurOut("Using " + columnfile + " as input file for the column parameter."); m->mothurOutEndLine(); } - else { - phylipfile = m->getPhylipFile(); + else { + phylipfile = m->getPhylipFile(); if (phylipfile != "") { distFile = phylipfile; format = "phylip"; m->mothurOut("Using " + phylipfile + " as input file for the phylip parameter."); m->mothurOutEndLine(); } - else { - m->mothurOut("No valid current files. You must provide a phylip or column file."); m->mothurOutEndLine(); + else { + m->mothurOut("No valid current files. You must provide a phylip or column file."); m->mothurOutEndLine(); abort = true; } } }else if ((phylipfile != "") && (columnfile != "")) { m->mothurOut("When executing a sens.spec command you must enter ONLY ONE of the following: phylip or column."); m->mothurOutEndLine(); abort = true; } - - - //if the user changes the output directory command factory will send this info to us in the output parameter + + + //if the user changes the output directory command factory will send this info to us in the output parameter outputDir = validParameter.validFile(parameters, "outputdir", false); - if (outputDir == "not found"){ - outputDir = ""; - outputDir += m->hasPath(listFile); //if user entered a file with a path then preserve it + if (outputDir == "not found"){ + outputDir = ""; + outputDir += m->hasPath(listFile); //if user entered a file with a path then preserve it } //check for optional parameter and set defaults @@ -181,23 +181,23 @@ SensSpecCommand::SensSpecCommand(string option) { if (temp == "not found"){ hard = 0; } else if(!m->isTrue(temp)) { hard = 0; } else if(m->isTrue(temp)) { hard = 1; } - + temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "-1.00"; } - m->mothurConvert(temp, cutoff); + m->mothurConvert(temp, cutoff); // cout << cutoff << endl; - + temp = validParameter.validFile(parameters, "precision", false); if (temp == "not found") { temp = "100"; } - m->mothurConvert(temp, precision); + m->mothurConvert(temp, precision); // cout << precision << endl; - - string label = validParameter.validFile(parameters, "label", false); + + string label = validParameter.validFile(parameters, "label", false); if (label == "not found") { label = ""; } - else { + else { if(label != "all") { m->splitAtDash(label, labels); allLines = 0; } else { allLines = 1; } } - - map variables; + + map variables; variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(listFile)); sensSpecFileName = getOutputFileName("sensspec",variables); } @@ -212,32 +212,32 @@ SensSpecCommand::SensSpecCommand(string option) { int SensSpecCommand::execute(){ try{ if (abort == true) { if (calledHelp) { return 0; } return 2; } - + int startTime = time(NULL); - + //create list file with only unique names, saves time and memory by removing redundant names from list file that are not in the distance file. string newListFile = preProcessList(); if (newListFile != "") { listFile = newListFile; } - + setUpOutput(); outputNames.push_back(sensSpecFileName); outputTypes["sensspec"].push_back(sensSpecFileName); if(format == "phylip") { processPhylip(); } else if(format == "column") { processColumn(); } - + //remove temp file if created if (newListFile != "") { m->mothurRemove(newListFile); } - + if (m->control_pressed) { m->mothurRemove(sensSpecFileName); return 0; } - + m->mothurOut("It took " + toString(time(NULL) - startTime) + " to run sens.spec."); m->mothurOutEndLine(); - + m->mothurOutEndLine(); m->mothurOut("Output File Names: "); m->mothurOutEndLine(); - m->mothurOut(sensSpecFileName); m->mothurOutEndLine(); + m->mothurOut(sensSpecFileName); m->mothurOutEndLine(); m->mothurOutEndLine(); - - - return 0; + + + return 0; } catch(exception& e) { m->errorOut(e, "SensSpecCommand", "execute"); @@ -249,7 +249,7 @@ bool SensSpecCommand::testFile(){ try{ ifstream fileHandle; m->openInputFile(phylipfile, fileHandle); - + bool square = false; string numTest, name; fileHandle >> numTest >> name; @@ -268,7 +268,7 @@ bool SensSpecCommand::testFile(){ } } fileHandle.close(); - + return square; } catch(exception& e) { @@ -279,115 +279,20 @@ bool SensSpecCommand::testFile(){ //*************************************************************************************************************** -int SensSpecCommand::processPhylip(){ - try{ - //probably need some checking to confirm that the names in the distance matrix are the same as those in the list file - square = testFile(); - string origCutoff = ""; - bool getCutoff = 0; - if(cutoff == -1.00) { getCutoff = 1; } - else { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } - - map seqMap; - string seqList; - - InputData input(listFile, "list"); - ListVector* list = input.getListVector(); - string lastLabel = list->getLabel(); - - //if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label. - set processedLabels; - set userLabels = labels; - - while((list != NULL) && ((allLines == 1) || (userLabels.size() != 0))) { - - if(m->control_pressed){ - for (int i = 0; i < outputNames.size(); i++){ m->mothurRemove(outputNames[i]); } delete list; return 0; - } - - if(allLines == 1 || labels.count(list->getLabel()) == 1){ - - processedLabels.insert(list->getLabel()); - userLabels.erase(list->getLabel()); - - //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); - } - - if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { - string saveLabel = list->getLabel(); - - delete list; - list = input.getListVector(lastLabel); - - processedLabels.insert(list->getLabel()); - userLabels.erase(list->getLabel()); - - //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); - - //restore real lastlabel to save below - list->setLabel(saveLabel); - } - - lastLabel = list->getLabel(); - - delete list; - list = input.getListVector(); - } - - - //output error messages about any remaining user labels - set::iterator it; - bool needToRun = false; - for (it = userLabels.begin(); it != userLabels.end(); it++) { - m->mothurOut("Your file does not include the label " + *it); - if (processedLabels.count(lastLabel) != 1) { - m->mothurOut(". I will use " + lastLabel + "."); m->mothurOutEndLine(); - needToRun = true; - }else { - m->mothurOut(". Please refer to " + lastLabel + "."); m->mothurOutEndLine(); - } - } - - //run last label if you need to - if (needToRun == true) { - if (list != NULL) { delete list; } - list = input.getListVector(lastLabel); - - //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); - - delete list; - } - - return 0; - } - catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "processPhylip"); - exit(1); - } -} - -//*************************************************************************************************************** - int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ try { //for each otu for(int i=0;igetNumBins();i++){ - + if (m->control_pressed) { return 0; } - + string seqList = list->get(i); int seqListLength = seqList.length(); string seqName = ""; - + //parse bin by name, mapping each name to its otu number for(int j=0;j& seqMap, ListVector*& list){ else{ seqName += seqList[j]; } - + } seqMap[seqName] = i; } - + return 0; } catch(exception& e) { @@ -411,20 +316,20 @@ int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ int SensSpecCommand::fillSeqPairSet(set& seqPairSet, ListVector*& list){ try { int numSeqs = 0; - + //for each otu for(int i=0;igetNumBins();i++){ - + if (m->control_pressed) { return 0; } - + vector seqNameVector; string bin = list->get(i); m->splitAtComma(bin, seqNameVector); - + numSeqs += seqNameVector.size(); - + for(int j=0;j& seqPairSet, ListVector*& list){ } } } - + return numSeqs; } catch(exception& e) { @@ -443,48 +348,48 @@ int SensSpecCommand::fillSeqPairSet(set& seqPairSet, ListVector*& list){ //*************************************************************************************************************** int SensSpecCommand::process(map& seqMap, string label, bool& getCutoff, string& origCutoff){ try { - + int lNumSeqs = seqMap.size(); int pNumSeqs = 0; - + ifstream phylipFile; m->openInputFile(distFile, phylipFile); phylipFile >> pNumSeqs; if(pNumSeqs != lNumSeqs){ m->mothurOut("numSeq mismatch!\n"); /*m->control_pressed = true;*/ } - + string seqName; double distance; vector otuIndices(lNumSeqs, -1); - + truePositives = 0; falsePositives = 0; trueNegatives = 0; falseNegatives = 0; - + if(getCutoff == 1){ if(label != "unique"){ origCutoff = label; convert(label, cutoff); - if(hard == 0){ cutoff += (0.49 / double(precision)); } + if(hard == 0){ cutoff += (0.49 / double(precision)); } } else{ origCutoff = "unique"; cutoff = 0.0000; } } - + m->mothurOut(label); m->mothurOutEndLine(); - + for(int i=0;icontrol_pressed) { return 0; } - + phylipFile >> seqName; otuIndices[i] = seqMap[seqName]; - + for(int j=0;j> distance; - + if(distance <= cutoff){ if(otuIndices[i] == otuIndices[j]) { truePositives++; } else { falseNegatives++; } @@ -494,14 +399,14 @@ int SensSpecCommand::process(map& seqMap, string label, bool& getCu else { trueNegatives++; } } } - + if (square) { m->getline(phylipFile); } //get rest of line - redundant distances m->gobble(phylipFile); } phylipFile.close(); - + outputStatistics(label, origCutoff); - + return 0; } catch(exception& e) { @@ -513,61 +418,61 @@ int SensSpecCommand::process(map& seqMap, string label, bool& getCu int SensSpecCommand::process(set& seqPairSet, string label, bool& getCutoff, string& origCutoff, int numSeqs){ try { int numDists = (numSeqs * (numSeqs-1) / 2); - + ifstream columnFile; m->openInputFile(distFile, columnFile); string seqNameA, seqNameB, seqPairString; double distance; - + truePositives = 0; falsePositives = 0; trueNegatives = numDists; falseNegatives = 0; - + if(getCutoff == 1){ if(label != "unique"){ origCutoff = label; convert(label, cutoff); - if(hard == 0){ cutoff += (0.49 / double(precision)); } + if(hard == 0){ cutoff += (0.49 / double(precision)); } } else{ origCutoff = "unique"; cutoff = 0.0000; } } - + m->mothurOut(label); m->mothurOutEndLine(); - + while(columnFile){ columnFile >> seqNameA >> seqNameB >> distance; if(seqNameA < seqNameB) { seqPairString = seqNameA + '\t' + seqNameB; } else { seqPairString = seqNameB + '\t' + seqNameA; } - + set::iterator it = seqPairSet.find(seqPairString); - + if(distance <= cutoff){ if(it != seqPairSet.end()){ truePositives++; - seqPairSet.erase(it); + seqPairSet.erase(it); } else{ falseNegatives++; } trueNegatives--; } - else if(it != seqPairSet.end()){ + else if(it != seqPairSet.end()){ falsePositives++; trueNegatives--; - seqPairSet.erase(it); + seqPairSet.erase(it); } - + m->gobble(columnFile); } falsePositives += seqPairSet.size(); - + outputStatistics(label, origCutoff); - - + + return 0; } catch(exception& e) { @@ -575,70 +480,167 @@ int SensSpecCommand::process(set& seqPairSet, string label, bool& getCut exit(1); } } + +//*************************************************************************************************************** + +int SensSpecCommand::processPhylip(){ + try{ + //probably need some checking to confirm that the names in the distance matrix are the same as those in the list file + square = testFile(); + string origCutoff = ""; + bool getCutoff = 0; + + if(cutoff == -1.00) { getCutoff = 1; } + else if(!hard) { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } + + map seqMap; + string seqList; + + InputData input(listFile, "list"); + ListVector* list = input.getListVector(); + string lastLabel = list->getLabel(); + + //if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label. + set processedLabels; + set userLabels = labels; + + while((list != NULL) && ((allLines == 1) || (userLabels.size() != 0))) { + + if(m->control_pressed){ + for (int i = 0; i < outputNames.size(); i++){ m->mothurRemove(outputNames[i]); } delete list; return 0; + } + + if(allLines == 1 || labels.count(list->getLabel()) == 1){ + + processedLabels.insert(list->getLabel()); + userLabels.erase(list->getLabel()); + + //process + fillSeqMap(seqMap, list); + process(seqMap, list->getLabel(), getCutoff, origCutoff); + } + + if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { + string saveLabel = list->getLabel(); + + delete list; + list = input.getListVector(lastLabel); + + processedLabels.insert(list->getLabel()); + userLabels.erase(list->getLabel()); + + //process + fillSeqMap(seqMap, list); + process(seqMap, list->getLabel(), getCutoff, origCutoff); + + //restore real lastlabel to save below + list->setLabel(saveLabel); + } + + lastLabel = list->getLabel(); + + delete list; + list = input.getListVector(); + } + + + //output error messages about any remaining user labels + set::iterator it; + bool needToRun = false; + for (it = userLabels.begin(); it != userLabels.end(); it++) { + m->mothurOut("Your file does not include the label " + *it); + if (processedLabels.count(lastLabel) != 1) { + m->mothurOut(". I will use " + lastLabel + "."); m->mothurOutEndLine(); + needToRun = true; + }else { + m->mothurOut(". Please refer to " + lastLabel + "."); m->mothurOutEndLine(); + } + } + + //run last label if you need to + if (needToRun == true) { + if (list != NULL) { delete list; } + list = input.getListVector(lastLabel); + + //process + fillSeqMap(seqMap, list); + process(seqMap, list->getLabel(), getCutoff, origCutoff); + + delete list; + } + + return 0; + } + catch(exception& e) { + m->errorOut(e, "SensSpecCommand", "processPhylip"); + exit(1); + } +} + //*************************************************************************************************************** int SensSpecCommand::processColumn(){ - try{ + try{ string origCutoff = ""; bool getCutoff = 0; if(cutoff == -1.00) { getCutoff = 1; } - else { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } - + else if(!hard) { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } + set seqPairSet; int numSeqs = 0; - + InputData input(listFile, "list"); ListVector* list = input.getListVector(); string lastLabel = list->getLabel(); - + //if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label. set processedLabels; set userLabels = labels; - - + + while((list != NULL) && ((allLines == 1) || (userLabels.size() != 0))) { - + if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete list; return 0; } - - if(allLines == 1 || labels.count(list->getLabel()) == 1){ - + + if(allLines == 1 || labels.count(list->getLabel()) == 1){ + processedLabels.insert(list->getLabel()); userLabels.erase(list->getLabel()); - + //process numSeqs = fillSeqPairSet(seqPairSet, list); process(seqPairSet, list->getLabel(), getCutoff, origCutoff, numSeqs); } - + if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { string saveLabel = list->getLabel(); - + delete list; list = input.getListVector(lastLabel); - + processedLabels.insert(list->getLabel()); userLabels.erase(list->getLabel()); - + //process numSeqs = fillSeqPairSet(seqPairSet, list); process(seqPairSet, list->getLabel(), getCutoff, origCutoff, numSeqs); - + //restore real lastlabel to save below list->setLabel(saveLabel); - } - - lastLabel = list->getLabel(); - + } + + lastLabel = list->getLabel(); + delete list; list = input.getListVector(); } - - + + //output error messages about any remaining user labels set::iterator it; bool needToRun = false; - for (it = userLabels.begin(); it != userLabels.end(); it++) { - m->mothurOut("Your file does not include the label " + *it); + for (it = userLabels.begin(); it != userLabels.end(); it++) { + m->mothurOut("Your file does not include the label " + *it); if (processedLabels.count(lastLabel) != 1) { m->mothurOut(". I will use " + lastLabel + "."); m->mothurOutEndLine(); needToRun = true; @@ -646,18 +648,18 @@ int SensSpecCommand::processColumn(){ m->mothurOut(". Please refer to " + lastLabel + "."); m->mothurOutEndLine(); } } - + //run last label if you need to if (needToRun == true) { if (list != NULL) { delete list; } list = input.getListVector(lastLabel); - + //process numSeqs = fillSeqPairSet(seqPairSet, list); delete list; process(seqPairSet, list->getLabel(), getCutoff, origCutoff, numSeqs); } - + return 0; } catch(exception& e) { @@ -669,10 +671,10 @@ int SensSpecCommand::processColumn(){ //*************************************************************************************************************** void SensSpecCommand::setUpOutput(){ - try{ + try{ ofstream sensSpecFile; m->openOutputFile(sensSpecFileName, sensSpecFile); - + sensSpecFile << "label\tcutoff\ttp\ttn\tfp\tfn\tsensitivity\tspecificity\tppv\tnpv\tfdr\taccuracy\tmcc\tf1score\n"; sensSpecFile.close(); @@ -686,44 +688,44 @@ void SensSpecCommand::setUpOutput(){ //*************************************************************************************************************** void SensSpecCommand::outputStatistics(string label, string cutoff){ - try{ + try{ double tp = (double) truePositives; double fp = (double) falsePositives; double tn = (double) trueNegatives; double fn = (double) falseNegatives; - + double p = tp + fn; double n = fp + tn; double pPrime = tp + fp; double nPrime = tn + fn; - - double sensitivity = tp / p; + + double sensitivity = tp / p; double specificity = tn / n; double positivePredictiveValue = tp / pPrime; double negativePredictiveValue = tn / nPrime; double falseDiscoveryRate = fp / pPrime; - + double accuracy = (tp + tn) / (p + n); double matthewsCorrCoef = (tp * tn - fp * fn) / sqrt(p * n * pPrime * nPrime); if(p == 0 || n == 0){ matthewsCorrCoef = 0; } double f1Score = 2.0 * tp / (p + pPrime); - - + + if(p == 0) { sensitivity = 0; matthewsCorrCoef = 0; } if(n == 0) { specificity = 0; matthewsCorrCoef = 0; } if(p + n == 0) { accuracy = 0; } if(p + pPrime == 0) { f1Score = 0; } if(pPrime == 0) { positivePredictiveValue = 0; falseDiscoveryRate = 0; matthewsCorrCoef = 0; } if(nPrime == 0) { negativePredictiveValue = 0; matthewsCorrCoef = 0; } - + ofstream sensSpecFile; m->openOutputFileAppend(sensSpecFileName, sensSpecFile); - + sensSpecFile << label << '\t' << cutoff << '\t'; sensSpecFile << truePositives << '\t' << trueNegatives << '\t' << falsePositives << '\t' << falseNegatives << '\t'; sensSpecFile << setprecision(4); sensSpecFile << sensitivity << '\t' << specificity << '\t' << positivePredictiveValue << '\t' << negativePredictiveValue << '\t'; sensSpecFile << falseDiscoveryRate << '\t' << accuracy << '\t' << matthewsCorrCoef << '\t' << f1Score << endl; - + sensSpecFile.close(); } catch(exception& e) { @@ -738,18 +740,18 @@ string SensSpecCommand::preProcessList(){ set uniqueNames; //get unique names from distance file if (format == "phylip") { - + ifstream phylipFile; m->openInputFile(distFile, phylipFile); string numTest; int pNumSeqs; phylipFile >> numTest; m->gobble(phylipFile); - + if (!m->isContainingOnlyDigits(numTest)) { m->mothurOut("[ERROR]: expected a number and got " + numTest + ", quitting."); m->mothurOutEndLine(); exit(1); } else { m->mothurConvert(numTest, pNumSeqs); } - + string seqName; for(int i=0;icontrol_pressed) { return ""; } @@ -762,7 +764,7 @@ string SensSpecCommand::preProcessList(){ m->openInputFile(distFile, columnFile); string seqNameA, seqNameB; double distance; - + while(columnFile){ if (m->control_pressed) { return ""; } columnFile >> seqNameA >> seqNameB >> distance; @@ -771,55 +773,55 @@ string SensSpecCommand::preProcessList(){ } columnFile.close(); } - + //read list file, if numSeqs > unique names then remove redundant names string newListFile = listFile + ".temp"; ofstream out; m->openOutputFile(newListFile, out); ifstream in; m->openInputFile(listFile, in); - + bool wroteSomething = false; - + while(!in.eof()){ - + if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(newListFile); return ""; } - + //read in list vector ListVector list(in); - + //listfile is already unique if (list.getNumSeqs() == uniqueNames.size()) { in.close(); out.close(); m->mothurRemove(newListFile); return ""; } - + //make a new list vector ListVector newList; newList.setLabel(list.getLabel()); vector binLabels = list.getLabels(); vector newLabels; - + //for each bin for (int i = 0; i < list.getNumBins(); i++) { - + //parse out names that are in accnos file string binnames = list.get(i); vector bnames; m->splitAtComma(binnames, bnames); - + string newNames = ""; for (int j = 0; j < bnames.size(); j++) { string name = bnames[j]; //if that name is in the .accnos file, add it if (uniqueNames.count(name) != 0) { newNames += name + ","; } } - + //if there are names in this bin add to new list - if (newNames != "") { + if (newNames != "") { newNames = newNames.substr(0, newNames.length()-1); //rip off extra comma newList.push_back(newNames); newLabels.push_back(binLabels[i]); } } - + //print new listvector if (newList.getNumBins() != 0) { wroteSomething = true; @@ -827,16 +829,16 @@ string SensSpecCommand::preProcessList(){ if (!m->printedListHeaders) { newList.printHeaders(out); } newList.print(out); } - + m->gobble(in); } - in.close(); + in.close(); out.close(); if (wroteSomething) { return newListFile; } else { m->mothurRemove(newListFile); } - - return ""; + + return ""; } catch(exception& e) { m->errorOut(e, "SensSpecCommand", "preProcessList"); @@ -846,6 +848,3 @@ string SensSpecCommand::preProcessList(){ //*************************************************************************************************************** - - - From 8bff866631e1685d1d524d3c3c263d869b6f6fd1 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 6 Aug 2015 17:00:02 -0400 Subject: [PATCH 012/135] Adds biom.info command Issue #82 --- Mothur.xcodeproj/project.pbxproj | 8 + source/commandfactory.cpp | 5 + source/commands/biominfocommand.cpp | 804 ++++++++++++++++++++++++++++++++++++ source/commands/biominfocommand.h | 57 +++ source/commands/sharedcommand.cpp | 2 +- 5 files changed, 875 insertions(+), 1 deletion(-) create mode 100644 source/commands/biominfocommand.cpp create mode 100644 source/commands/biominfocommand.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 53c691fe..9060b54b 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -387,6 +387,8 @@ 48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728681B69598400D40830 /* testmergegroupscommand.cpp */; }; 48C728721B6AB3B900D40830 /* testremovegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */; }; 48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */; }; + 48C728791B728D6B00D40830 /* biominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728771B728D6B00D40830 /* biominfocommand.cpp */; }; + 48C7287A1B728D6B00D40830 /* biominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728771B728D6B00D40830 /* biominfocommand.cpp */; }; 48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48E981CF189C38FB0042BE9D /* (null) in Sources */ = {isa = PBXBuildFile; }; @@ -823,6 +825,8 @@ 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testgetgroupscommand.cpp; path = testcommands/testgetgroupscommand.cpp; sourceTree = ""; }; 48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testgetgroupscommand.h; path = testcommands/testgetgroupscommand.h; sourceTree = ""; }; 48C728761B6AB4EE00D40830 /* testsequence.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testsequence.h; path = testcontainers/testsequence.h; sourceTree = ""; }; + 48C728771B728D6B00D40830 /* biominfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = biominfocommand.cpp; path = source/commands/biominfocommand.cpp; sourceTree = ""; }; + 48C728781B728D6B00D40830 /* biominfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = biominfocommand.h; path = source/commands/biominfocommand.h; sourceTree = ""; }; 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefilecommand.cpp; path = source/commands/makefilecommand.cpp; sourceTree = ""; }; 48DB37B21B3B27E000C372A4 /* makefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefilecommand.h; path = source/commands/makefilecommand.h; sourceTree = ""; }; 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = completelinkage.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/completelinkage.cpp; sourceTree = ""; }; @@ -1801,6 +1805,8 @@ A71CB15E130B04A2001E7287 /* anosimcommand.cpp */, A7E9B66112D37EC300DA6239 /* binsequencecommand.h */, A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */, + 48C728781B728D6B00D40830 /* biominfocommand.h */, + 48C728771B728D6B00D40830 /* biominfocommand.cpp */, A7E9B67312D37EC400DA6239 /* catchallcommand.h */, A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */, A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */, @@ -2761,6 +2767,7 @@ 481FB62D1AC1B7EA0076CFF3 /* distancedb.cpp in Sources */, 481FB5AA1AC1B7300076CFF3 /* consensusseqscommand.cpp in Sources */, 481FB5AE1AC1B7300076CFF3 /* countseqscommand.cpp in Sources */, + 48C7287A1B728D6B00D40830 /* biominfocommand.cpp in Sources */, 481FB5811AC1B6EA0076CFF3 /* whittaker.cpp in Sources */, 481FB58E1AC1B7060076CFF3 /* completelinkage.cpp in Sources */, 481FB6301AC1B7EA0076CFF3 /* flowdata.cpp in Sources */, @@ -3134,6 +3141,7 @@ A7E9B94F12D37EC400DA6239 /* sharedkulczynski.cpp in Sources */, A7E9B95012D37EC400DA6239 /* sharedkulczynskicody.cpp in Sources */, 48705AC419BE32C50075E977 /* getmimarkspackagecommand.cpp in Sources */, + 48C728791B728D6B00D40830 /* biominfocommand.cpp in Sources */, A7E9B95112D37EC400DA6239 /* sharedlennon.cpp in Sources */, A7E9B95212D37EC400DA6239 /* sharedlistvector.cpp in Sources */, A7E9B95312D37EC400DA6239 /* sharedmarczewski.cpp in Sources */, diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index be0ea791..ed7f0017 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -155,6 +155,7 @@ #include "mimarksattributescommand.h" #include "setseedcommand.h" #include "makefilecommand.h" +#include "biominfocommand.h" //needed for testing project //CommandFactory* CommandFactory::_uniqueInstance; @@ -335,6 +336,7 @@ CommandFactory::CommandFactory(){ commands["get.mimarkspackage"] = "get.mimarkspackage"; commands["mimarks.attributes"] = "mimarks.attributes"; commands["make.file"] = "make.file"; + commands["biom.info"] = "biom.info"; commands["set.seed"] = "set.seed"; @@ -599,6 +601,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){ else if(commandName == "mimarks.attributes") { command = new MimarksAttributesCommand(optionString); } else if(commandName == "set.seed") { command = new SetSeedCommand(optionString); } else if(commandName == "make.file") { command = new MakeFileCommand(optionString); } + else if(commandName == "biom.info") { command = new BiomInfoCommand(optionString); } else { command = new NoCommand(optionString); } return command; @@ -774,6 +777,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str else if(commandName == "mimarks.attributes") { pipecommand = new MimarksAttributesCommand(optionString); } else if(commandName == "set.seed") { pipecommand = new SetSeedCommand(optionString); } else if(commandName == "make.file") { pipecommand = new MakeFileCommand(optionString); } + else if(commandName == "biom.info") { pipecommand = new BiomInfoCommand(optionString); } else { pipecommand = new NoCommand(optionString); } return pipecommand; @@ -935,6 +939,7 @@ Command* CommandFactory::getCommand(string commandName){ else if(commandName == "mimarks.attributes") { shellcommand = new MimarksAttributesCommand(); } else if(commandName == "set.seed") { shellcommand = new SetSeedCommand(); } else if(commandName == "make.file") { shellcommand = new MakeFileCommand(); } + else if(commandName == "biom.info") { shellcommand = new BiomInfoCommand(); } else { shellcommand = new NoCommand(); } return shellcommand; diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp new file mode 100644 index 00000000..c4a5bfeb --- /dev/null +++ b/source/commands/biominfocommand.cpp @@ -0,0 +1,804 @@ +// +// biominfocommand.cpp +// Mothur +// +// Created by Sarah Westcott on 8/5/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "biominfocommand.h" +#include "sharedutilities.h" + + +//********************************************************************************************************************** +vector BiomInfoCommand::setParameters(){ + try { + CommandParameter pbiom("biom", "InputTypes", "", "", "", "", "","",false,true, true); parameters.push_back(pbiom); + CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); + CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); + CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); + CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); + + vector myArray; + for (int i = 0; i < parameters.size(); i++) { myArray.push_back(parameters[i].name); } + return myArray; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "setParameters"); + exit(1); + } +} +//********************************************************************************************************************** +string BiomInfoCommand::getHelpString(){ + try { + string helpString = ""; + helpString += "The biom.info command reads a biom file creates a shared file. If your biom file contains metadata mothur will also create taxonomy or constaxonomy files.\n"; + helpString += "The biom.info command parameters are biom and label. The biom parameter is required.\n"; + helpString += "The label parameter allows you to enter a distance label to be used in the shared file created from your biom file.\n"; + helpString += "The biom.info command should be in the following format: biom.info(biom=test.biom, label=0.03).\n"; + helpString += "Note: No spaces between parameter labels (i.e. label), '=' and parameters (i.e. 0.03).\n"; + return helpString; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getHelpString"); + exit(1); + } +} +//********************************************************************************************************************** +string BiomInfoCommand::getOutputPattern(string type) { + try { + string pattern = ""; + + if (type == "shared") { pattern = "[filename],[tag],shared"; } + else if (type == "constaxonomy") { pattern = "[filename],[tag],cons.taxonomy"; } + else if (type == "taxonomy") { pattern = "[filename],[tag],taxonomy"; } + else if (type == "taxsummary") { pattern = "[filename],[tag],[tag2],tax.summary"; } //tag2 = "" for taxonomy tag2 = cons for constaxonomy + else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } + + return pattern; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getOutputPattern"); + exit(1); + } +} +//********************************************************************************************************************** +BiomInfoCommand::BiomInfoCommand(){ + try { + abort = true; calledHelp = true; + setParameters(); + vector tempOutNames; + outputTypes["taxonomy"] = tempOutNames; + outputTypes["shared"] = tempOutNames; + outputTypes["constaxonomy"] = tempOutNames; + outputTypes["taxsummary"] = tempOutNames; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "BiomInfoCommand"); + exit(1); + } +} +//********************************************************************************************************************** +BiomInfoCommand::BiomInfoCommand(string option) { + try { + abort = false; calledHelp = false; pickedGroups=false; + + //allow user to run help + if(option == "help") { help(); abort = true; calledHelp = true; } + else if(option == "citation") { citation(); abort = true; calledHelp = true;} + + else { + + vector myArray = setParameters(); + + OptionParser parser(option); + map parameters = parser.getParameters(); + + ValidParameters validParameter; + map::iterator it; + + //check to make sure all parameters are valid for command + for (it = parameters.begin(); it != parameters.end(); it++) { + if (validParameter.isValidParameter(it->first, myArray, it->second) != true) { abort = true; } + } + + //if the user changes the input directory command factory will send this info to us in the output parameter + string inputDir = validParameter.validFile(parameters, "inputdir", false); + if (inputDir == "not found"){ inputDir = ""; } + else { + string path; + it = parameters.find("biom"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["biom"] = inputDir + it->second; } + } + } + + vector tempOutNames; + outputTypes["taxonomy"] = tempOutNames; + outputTypes["shared"] = tempOutNames; + outputTypes["constaxonomy"] = tempOutNames; + outputTypes["taxsummary"] = tempOutNames; + + //if the user changes the output directory command factory will send this info to us in the output parameter + outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; } + + //check for required parameters + biomfile = validParameter.validFile(parameters, "biom", true); + if (biomfile == "not open") { biomfile = ""; abort = true; } + else if (biomfile == "not found") { biomfile = ""; m->mothurOut("[ERROR]: You must provide a biom file, please correct.\n"); abort = true;} + else { m->setBiomFile(biomfile); } + + label = validParameter.validFile(parameters, "label", false); + if (label == "not found") { label = "userLabel"; } + } + + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "BiomInfoCommand"); + exit(1); + } +} +//********************************************************************************************************************** + +int BiomInfoCommand::execute(){ + try { + + if (abort == true) { if (calledHelp) { return 0; } return 2; } + + createSharedFromBiom(); + + if (m->control_pressed) { + for (int i = 0; i < outputNames.size(); i++) { + m->mothurRemove(outputNames[i]); + } + } + + string current = ""; + itTypes = outputTypes.find("shared"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setSharedFile(current); } + } + + m->mothurOutEndLine(); + m->mothurOut("Output File Names: "); m->mothurOutEndLine(); + for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } + m->mothurOutEndLine(); + + return 0; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "execute"); + exit(1); + } +} +//********************************************************************************************************************** +int BiomInfoCommand::createSharedFromBiom() { + try { + //getting output filename + string filename = biomfile; + if (outputDir == "") { outputDir += m->hasPath(filename); } + + map variables; + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(filename)); + variables["[tag]"] = label; + filename = getOutputFileName("shared",variables); + outputNames.push_back(filename); outputTypes["shared"].push_back(filename); + + ofstream out; + m->openOutputFile(filename, out); + + /*{ + "id":"/Users/SarahsWork/Desktop/release/temp.job2.shared-unique", + "format": "Biological Observation Matrix 0.9.1", + "format_url": "http://biom-format.org", + "type": "OTU table", + "generated_by": "mothur1.24.0", + "date": "Tue Apr 17 13:12:07 2012", */ + + ifstream in; + m->openInputFile(biomfile, in); + + string matrixFormat = ""; + int numRows = 0; + int numCols = 0; + int shapeNumRows = 0; + int shapeNumCols = 0; + vector otuNames; + vector groupNames; + map fileLines; + vector names; + int countOpenBrace = 0; + int countClosedBrace = 0; + int openParen = -1; //account for opening brace + int closeParen = 0; + bool ignoreCommas = false; + bool atComma = false; + string line = ""; + string matrixElementType = ""; + + while (!in.eof()) { //split file by tags, so each "line" will have something like "id":"/Users/SarahsWork/Desktop/release/final.tx.1.subsample.1.pick.shared-1" + if (m->control_pressed) { break; } + + char c = in.get(); m->gobble(in); + + if (c == '[') { countOpenBrace++; } + else if (c == ']') { countClosedBrace++; } + else if (c == '{') { openParen++; } + else if (c == '}') { closeParen++; } + else if ((!ignoreCommas) && (c == ',')) { atComma = true; } + + if ((countOpenBrace != countClosedBrace) && (countOpenBrace != countClosedBrace)) { ignoreCommas = true; } + else if ((countOpenBrace == countClosedBrace) && (countOpenBrace == countClosedBrace)) { ignoreCommas = false; } + if (atComma && !ignoreCommas) { + if (fileLines.size() == 0) { //clip first { + line = line.substr(1); + } + string tag = getTag(line); + fileLines[tag] = line; + + line = ""; + atComma = false; + ignoreCommas = false; + + }else { line += c; } + + } + if (line != "") { + line = line.substr(0, line.length()-1); + string tag = getTag(line); + fileLines[tag] = line; + + } + in.close(); + + string biomType; + map::iterator it; + it = fileLines.find("type"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a type provided.\n"); } + else { + string thisLine = it->second; + biomType = getTag(thisLine); + // if ((biomType != "OTU table") && (biomType != "OTUtable") && (biomType != "Taxon table") && (biomType != "Taxontable")) { m->mothurOut("[ERROR]: " + biomType + " is not a valid biom type for mothur. Only types allowed are OTU table and Taxon table.\n"); m->control_pressed = true; } + } + + if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + + it = fileLines.find("matrix_type"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a matrix_type provided.\n"); } + else { + string thisLine = it->second; + matrixFormat = getTag(thisLine); + if ((matrixFormat != "sparse") && (matrixFormat != "dense")) { m->mothurOut("[ERROR]: " + matrixFormat + " is not a valid biom matrix_type for mothur. Types allowed are sparse and dense.\n"); m->control_pressed = true; } + } + + if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + + it = fileLines.find("matrix_element_type"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a matrix_element_type provided.\n"); } + else { + string thisLine = it->second; + matrixElementType = getTag(thisLine); + if ((matrixElementType != "int") && (matrixElementType != "float")) { m->mothurOut("[ERROR]: " + matrixElementType + " is not a valid biom matrix_element_type for mothur. Types allowed are int and float.\n"); m->control_pressed = true; } + if (matrixElementType == "float") { m->mothurOut("[WARNING]: the shared file only uses integers, any float values will be rounded down to the nearest integer.\n"); } + } + + if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + + it = fileLines.find("rows"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a rows provided.\n"); } + else { + string thisLine = it->second; + if ((biomType == "Taxon table") || (biomType == "Taxontable")) { + string mapFilename = getOutputFileName("map",variables); + outputNames.push_back(mapFilename); outputTypes["map"].push_back(mapFilename); + ofstream outMap; + m->openOutputFile(mapFilename, outMap); + + vector taxonomies = readRows(thisLine, numRows); + + string snumBins = toString(numRows); + for (int i = 0; i < numRows; i++) { + + //if there is a bin label use it otherwise make one + string binLabel = "OTU"; + string sbinNumber = toString(i+1); + if (sbinNumber.length() < snumBins.length()) { + int diff = snumBins.length() - sbinNumber.length(); + for (int h = 0; h < diff; h++) { binLabel += "0"; } + } + binLabel += sbinNumber; + + otuNames.push_back(binLabel); + outMap << otuNames[i] << '\t' << taxonomies[i] << endl; + } + outMap.close(); + }else{ otuNames = readRows(thisLine, numRows); } + } + + if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + + it = fileLines.find("columns"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a columns provided.\n"); } + else { + string thisLine = it->second; + + //read sample names + groupNames = readRows(thisLine, numCols); + + //if users selected groups, then remove the groups not wanted. + SharedUtil util; + vector Groups = m->getGroups(); + vector allGroups = groupNames; + util.setGroups(Groups, allGroups); + m->setGroups(Groups); + + //set fileroot + fileroot = outputDir + m->getRootName(m->getSimpleName(biomfile)); + } + + if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + + it = fileLines.find("shape"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a shape provided.\n"); } + else { + string thisLine = it->second; + getDims(thisLine, shapeNumRows, shapeNumCols); + + //check shape + if (shapeNumCols != numCols) { m->mothurOut("[ERROR]: shape indicates " + toString(shapeNumCols) + " columns, but I only read " + toString(numCols) + " columns.\n"); m->control_pressed = true; } + + if (shapeNumRows != numRows) { m->mothurOut("[ERROR]: shape indicates " + toString(shapeNumRows) + " rows, but I only read " + toString(numRows) + " rows.\n"); m->control_pressed = true; } + } + + if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + + it = fileLines.find("data"); + if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a data provided.\n"); } + else { + string thisLine = it->second; + m->currentSharedBinLabels = otuNames; + + //read data + vector lookup = readData(matrixFormat, thisLine, matrixElementType, groupNames, otuNames.size()); + + m->mothurOutEndLine(); m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine(); + lookup[0]->printHeaders(out); + printSharedData(lookup, out); + } + + //for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { delete it3->second; } + //out.close(); + + if (m->control_pressed) { m->mothurRemove(filename); return 0; } + + return 0; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "createSharedFromBiom"); + exit(1); + } +} +//********************************************************************************************************************** +vector BiomInfoCommand::readData(string matrixFormat, string line, string matrixElementType, vector& groupNames, int numOTUs) { + try { + + vector lookup; + + //creates new sharedRAbunds + for (int i = 0; i < groupNames.size(); i++) { + SharedRAbundVector* temp = new SharedRAbundVector(numOTUs); //sets all abunds to 0 + temp->setLabel("userLabel"); + temp->setGroup(groupNames[i]); + lookup.push_back(temp); + } + + bool dataStart = false; + bool inBrackets = false; + string num = ""; + vector nums; + int otuCount = 0; + for (int i = 0; i < line.length(); i++) { + + if (m->control_pressed) { return lookup; } + + //look for opening [ to indicate data is starting + if ((line[i] == '[') && (!dataStart)) { dataStart = true; i++; if (!(i < line.length())) { break; } } + else if ((line[i] == ']') && dataStart && (!inBrackets)) { break; } //we are done reading data + + if (dataStart) { + if ((line[i] == '[') && (!inBrackets)) { inBrackets = true; i++; if (!(i < line.length())) { break; } } + else if ((line[i] == ']') && (inBrackets)) { + inBrackets = false; + int temp; + float temp2; + if (matrixElementType == "float") { m->mothurConvert(num, temp2); temp = (int)temp2; } + else { m->mothurConvert(num, temp); } + nums.push_back(temp); + num = ""; + + //save info to vectors + if (matrixFormat == "dense") { + + //sanity check + if (nums.size() != lookup.size()) { m->mothurOut("[ERROR]: trouble parsing OTU data. OTU " + toString(otuCount) + " causing errors.\n"); m->control_pressed = true; } + + //set abundances for this otu + //nums contains [abundSample0, abundSample1, abundSample2, ...] for current OTU + for (int j = 0; j < lookup.size(); j++) { lookup[j]->set(otuCount, nums[j], groupNames[j]); } + + otuCount++; + }else { + //sanity check + if (nums.size() != 3) { m->mothurOut("[ERROR]: trouble parsing OTU data.\n"); m->control_pressed = true; } + + //nums contains [otuNum, sampleNum, abundance] + lookup[nums[1]]->set(nums[0], nums[2], groupNames[nums[1]]); + } + nums.clear(); + } + + if (inBrackets) { + if (line[i] == ',') { + int temp; + m->mothurConvert(num, temp); + nums.push_back(temp); + num = ""; + }else { if (!isspace(line[i])) { num += line[i]; } } + } + } + } + + + SharedUtil util; + bool remove = false; + if (pickedGroups) { + for (int i = 0; i < lookup.size(); i++) { + //if this sharedrabund is not from a group the user wants then delete it. + if (util.isValidGroup(lookup[i]->getGroup(), m->getGroups()) == false) { + remove = true; + delete lookup[i]; lookup[i] = NULL; + lookup.erase(lookup.begin()+i); + i--; + } + } + } + + if (remove) { eliminateZeroOTUS(lookup); } + + + return lookup; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "readData"); + exit(1); + } +} +//********************************************************************************************************************** +int BiomInfoCommand::eliminateZeroOTUS(vector& thislookup) { + try { + + vector newLookup; + for (int i = 0; i < thislookup.size(); i++) { + SharedRAbundVector* temp = new SharedRAbundVector(); + temp->setLabel(thislookup[i]->getLabel()); + temp->setGroup(thislookup[i]->getGroup()); + newLookup.push_back(temp); + } + + //for each bin + vector newBinLabels; + string snumBins = toString(thislookup[0]->getNumBins()); + for (int i = 0; i < thislookup[0]->getNumBins(); i++) { + if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; } + + //look at each sharedRabund and make sure they are not all zero + bool allZero = true; + for (int j = 0; j < thislookup.size(); j++) { + if (thislookup[j]->getAbundance(i) != 0) { allZero = false; break; } + } + + //if they are not all zero add this bin + if (!allZero) { + for (int j = 0; j < thislookup.size(); j++) { + newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); + } + + //if there is a bin label use it otherwise make one + string binLabel = "Otu"; + string sbinNumber = toString(i+1); + if (sbinNumber.length() < snumBins.length()) { + int diff = snumBins.length() - sbinNumber.length(); + for (int h = 0; h < diff; h++) { binLabel += "0"; } + } + binLabel += sbinNumber; + if (i < m->currentSharedBinLabels.size()) { binLabel = m->currentSharedBinLabels[i]; } + + newBinLabels.push_back(binLabel); + } + } + + for (int j = 0; j < thislookup.size(); j++) { delete thislookup[j]; } + + thislookup = newLookup; + m->currentSharedBinLabels = newBinLabels; + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "eliminateZeroOTUS"); + exit(1); + } +} +//********************************************************************************************************************** +int BiomInfoCommand::getDims(string line, int& shapeNumRows, int& shapeNumCols) { + try { + //get shape + bool inBar = false; + string num = ""; + + for (int i = 0; i < line.length(); i++) { + + //you want to ignore any ; until you reach the next ' + if ((line[i] == '[') && (!inBar)) { inBar = true; i++; if (!(i < line.length())) { break; } } + else if ((line[i] == ']') && (inBar)) { + inBar= false; + m->mothurConvert(num, shapeNumCols); + break; + } + + if (inBar) { + if (line[i] == ',') { + m->mothurConvert(num, shapeNumRows); + num = ""; + }else { if (!isspace(line[i])) { num += line[i]; } } + } + } + + return 0; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getDims"); + exit(1); + } +} +//********************************************************************************************************************** +vector BiomInfoCommand::readRows(string line, int& numRows) { + try { + /*"rows":[ + {"id":"Otu01", "metadata":{"taxonomy":["Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Porphyromonadaceae", "unclassified"], "bootstrap":[100, 100, 100, 100, 100, 100]}}, + {"id":"Otu02", "metadata":{"taxonomy":["Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Rikenellaceae", "Alistipes"], "bootstrap":[100, 100, 100, 100, 100, 100]}}, + ... + + "rows":[{"id": "k__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae", "metadata": null}, + {"id": "k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae", "metadata": null} + .... + + make look like above + + + ],*/ + + vector names; + int countOpenBrace = 0; + int countClosedBrace = 0; + int openParen = 0; + int closeParen = 0; + string nextRow = ""; + bool end = false; + + for (int i = 0; i < line.length(); i++) { + + if (m->control_pressed) { return names; } + + if (line[i] == '[') { countOpenBrace++; } + else if (line[i] == ']') { countClosedBrace++; } + else if (line[i] == '{') { openParen++; } + else if (line[i] == '}') { closeParen++; } + else if (openParen != 0) { nextRow += line[i]; } //you are reading the row info + + //you have reached the end of the rows info + if ((countOpenBrace == countClosedBrace) && (countClosedBrace != 0)) { end = true; break; } + if ((openParen == closeParen) && (closeParen != 0)) { //process row + numRows++; + + cout << nextRow << endl; + vector results = getNamesAndTaxonomies(nextRow); + names.push_back(results[0]); + cout << results[0] << '\t' << results[1] << endl; + + nextRow = ""; + openParen = 0; + closeParen = 0; + } + } + + + return names; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "readRows"); + exit(1); + } +} +//********************************************************************************************************************** +//items[0] = id, items[1] = taxonomy, if items[2] then thats the taxonomy bootstrap values +vector BiomInfoCommand::getNamesAndTaxonomies(string line) { + try { + /*"rows":[ + {"id":"Otu01", "metadata":{"taxonomy":["Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Porphyromonadaceae", "unclassified"], "bootstrap":[100, 100, 100, 100, 100, 100]}}, + {"id":"Otu02", "metadata":{"taxonomy":["Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Rikenellaceae", "Alistipes"], "bootstrap":[100, 100, 100, 100, 100, 100]}}, + ... + + "rows":[{"id": "k__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae", "metadata": null}, + {"id": "k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales;f__Actinomycetaceae", "metadata": null} + .... + + make look like above + + + ],*/ + + vector results; + if (line == "") { return results; } + + int pos = line.find_first_of(','); + if (pos == string::npos) { //some kind of error?? we expect at least metadata : null, just grab name + results.push_back(getName(line)); + }else { + string value; + m->splitAtComma(value, line); //value hold name portion ("id":"Otu01") line holds rest + results.push_back(getName(value)); + + string taxonomy = ""; string bootstrap = ""; + int pos = line.find("taxonomy"); + if (pos != string::npos) { //no taxonomy info given + int pos2 = line.find("bootstrap"); + if (pos2 != string::npos) { //no taxonomy info given + taxonomy = line.substr(pos, (pos2-pos)); + bootstrap = line.substr(pos2); + }else { + taxonomy = line.substr(pos); + } + } + + results.push_back(getTaxonomy(taxonomy, bootstrap)); + } + + return results; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getNamesAndTaxonomies"); + exit(1); + } +} +//********************************************************************************************************************** +string BiomInfoCommand::getName(string line) { + try { + vector nameItems; + m->splitAtChar(line, nameItems, ':'); //split part we want containing the ids + string name = nameItems[1]; + + //remove "" if needed + int pos = name.find("\""); + if (pos != string::npos) { + string newName = ""; + for (int k = 0; k < name.length(); k++) { + if (name[k] != '\"') { newName += name[k]; } + } + name = newName; + } + + return name; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getName"); + exit(1); + } +} +//********************************************************************************************************************** +//"taxonomy":"Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Porphyromonadaceae", "unclassified", +//"bootstrap":100, 100, 100, 100, 100, 100 +string BiomInfoCommand::getTaxonomy(string taxonomy, string bootstrap) { + try { + vector results; + + if (taxonomy != "") { + vector taxItems; + m->splitAtChar(taxonomy, taxItems, ':'); //split part we want containing the ids + string taxons = taxItems[1]; + + string taxon; + while((taxons.find_first_of(',') != -1)) { + if (m->control_pressed) {break;} + m->splitAtComma(taxon, taxons); + results.push_back(taxon); + } + if (taxons != "") { results.push_back(taxons); } + } + + if (bootstrap != "") { + vector bootItems; + m->splitAtChar(bootstrap, bootItems, ':'); //split part we want containing the ids + string bootValues = bootItems[1]; + + string bootValue; + int i = 0; + while((bootValues.find_first_of(',') != -1)) { + if (m->control_pressed) {break;} + m->splitAtComma(bootValue, bootValues); + results[i]+="("+bootValue+")"; + i++; + } + if (bootValues != "") { results[i]+="("+bootValues+")"; } + } + + string result = ""; + for (int i = 0; i < results.size(); i++) { + if (m->control_pressed) {result = ""; break;} + result += results[i] + ";"; + } + + return result; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getTaxonomy"); + exit(1); + } +} +//********************************************************************************************************************** +//designed for things like "type": "OTU table", returns type +string BiomInfoCommand::getTag(string& line) { + try { + bool inQuotes = false; + string tag = ""; + char c = '\"'; + + for (int i = 0; i < line.length(); i++) { + + //you want to ignore any ; until you reach the next ' + if ((line[i] == c) && (!inQuotes)) { inQuotes = true; } + else if ((line[i] == c) && (inQuotes)) { + inQuotes= false; + line = line.substr(i+1); + return tag; + } + + if (inQuotes) { if (line[i] != c) { tag += line[i]; } } + } + + return tag; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "getTag"); + exit(1); + } +} +//********************************************************************************************************************** +void BiomInfoCommand::printSharedData(vector thislookup, ofstream& out) { + try { + + m->clearGroups(); + map Ovectors; + for (int i = 0; i < thislookup.size(); i++) { Ovectors[thislookup[i]->getGroup()] = thislookup[i]; } + + //initialize bin values + for (map::iterator it = Ovectors.begin(); it != Ovectors.end(); it++) { + out << (it->second)->getLabel() << '\t' << it->first << '\t'; + (it->second)->print(out); + + Groups.push_back(it->first); + } + m->setGroups(Groups); + + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "printSharedData"); + exit(1); + } +} + +//********************************************************************************************************************** diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h new file mode 100644 index 00000000..885132b0 --- /dev/null +++ b/source/commands/biominfocommand.h @@ -0,0 +1,57 @@ +// +// biominfocommand.h +// Mothur +// +// Created by Sarah Westcott on 8/5/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__biominfocommand__ +#define __Mothur__biominfocommand__ + +#include "command.hpp" +#include "inputdata.h" + +class BiomInfoCommand : public Command { + +#ifdef UNIT_TEST + friend class TestBiomInfoCommand; +#endif + +public: + BiomInfoCommand(string); + BiomInfoCommand(); + ~BiomInfoCommand() {} + + vector setParameters(); + string getCommandName() { return "biom.info"; } + string getCommandCategory() { return "OTU-Based Approaches"; } + + string getHelpString(); + string getOutputPattern(string); + string getCitation() { return "http://www.mothur.org/wiki/Biom.info"; } + string getDescription() { return "create 'mothur' files from a biom file. ie: shared, taxonomy, constaxonomy"; } + + int execute(); + void help() { m->mothurOut(getHelpString()); } + +private: + int eliminateZeroOTUS(vector&); + void printSharedData(vector, ofstream&); + int createSharedFromBiom(); + string getTag(string&); + string getName(string); + string getTaxonomy(string, string); + vector readRows(string, int&); + int getDims(string, int&, int&); + vector readData(string, string, string, vector&, int); + vector getNamesAndTaxonomies(string); + + vector Groups, outputNames; + string fileroot, outputDir, biomfile, label; + bool firsttime, pickedGroups, abort; + +}; + + +#endif /* defined(__Mothur__biominfocommand__) */ diff --git a/source/commands/sharedcommand.cpp b/source/commands/sharedcommand.cpp index 3de491d2..eb7986af 100644 --- a/source/commands/sharedcommand.cpp +++ b/source/commands/sharedcommand.cpp @@ -14,7 +14,7 @@ //******************************************************************************************************************** //sorts lowest to highest inline bool compareSharedRabunds(SharedRAbundVector* left, SharedRAbundVector* right){ - return (left->getGroup() < right->getGroup()); + return (left->getGroup() < right->getGroup()); } //********************************************************************************************************************** vector SharedCommand::setParameters(){ From 10d9bf87db0554dad97647e2f5f7e9e24eea794b Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 10 Aug 2015 14:44:42 -0400 Subject: [PATCH 013/135] Optimize sensspec to complete issue #138 --- source/commands/sensspeccommand.cpp | 365 ++++++++++-------------------------- source/commands/sensspeccommand.h | 32 ++-- 2 files changed, 114 insertions(+), 283 deletions(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 17ba80db..1448a401 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -178,17 +178,15 @@ SensSpecCommand::SensSpecCommand(string option) { //check for optional parameter and set defaults // ...at some point should added some additional type checking... temp = validParameter.validFile(parameters, "hard", false); - if (temp == "not found"){ hard = 0; } + if (temp == "not found"){ hard = 1; } else if(!m->isTrue(temp)) { hard = 0; } else if(m->isTrue(temp)) { hard = 1; } temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "-1.00"; } m->mothurConvert(temp, cutoff); -// cout << cutoff << endl; temp = validParameter.validFile(parameters, "precision", false); if (temp == "not found") { temp = "100"; } m->mothurConvert(temp, precision); -// cout << precision << endl; string label = validParameter.validFile(parameters, "label", false); if (label == "not found") { label = ""; } @@ -221,8 +219,8 @@ int SensSpecCommand::execute(){ setUpOutput(); outputNames.push_back(sensSpecFileName); outputTypes["sensspec"].push_back(sensSpecFileName); - if(format == "phylip") { processPhylip(); } - else if(format == "column") { processColumn(); } + + processListFile(); //remove temp file if created if (newListFile != "") { m->mothurRemove(newListFile); } @@ -244,38 +242,6 @@ int SensSpecCommand::execute(){ exit(1); } } -//*************************************************************************************************************** -bool SensSpecCommand::testFile(){ - try{ - ifstream fileHandle; - m->openInputFile(phylipfile, fileHandle); - - bool square = false; - string numTest, name; - fileHandle >> numTest >> name; - - if (!m->isContainingOnlyDigits(numTest)) { m->mothurOut("[ERROR]: expected a number and got " + numTest + ", quitting."); m->mothurOutEndLine(); exit(1); } - - char d; - while((d=fileHandle.get()) != EOF){ - if(isalnum(d)){ - square = true; - break; - } - if(d == '\n'){ - square = false; - break; - } - } - fileHandle.close(); - - return square; - } - catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "testFile"); - exit(1); - } -} //*************************************************************************************************************** @@ -312,65 +278,18 @@ int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ exit(1); } } -//*************************************************************************************************************** -int SensSpecCommand::fillSeqPairSet(set& seqPairSet, ListVector*& list){ - try { - int numSeqs = 0; - - //for each otu - for(int i=0;igetNumBins();i++){ - - if (m->control_pressed) { return 0; } - vector seqNameVector; - string bin = list->get(i); - m->splitAtComma(bin, seqNameVector); - - numSeqs += seqNameVector.size(); - - for(int j=0;jerrorOut(e, "SensSpecCommand", "fillSeqPairSet"); - exit(1); - } -} //*************************************************************************************************************** -int SensSpecCommand::process(map& seqMap, string label, bool& getCutoff, string& origCutoff){ - try { - - int lNumSeqs = seqMap.size(); - int pNumSeqs = 0; - - ifstream phylipFile; - m->openInputFile(distFile, phylipFile); - phylipFile >> pNumSeqs; - if(pNumSeqs != lNumSeqs){ m->mothurOut("numSeq mismatch!\n"); /*m->control_pressed = true;*/ } - string seqName; - double distance; - vector otuIndices(lNumSeqs, -1); +int SensSpecCommand::process(map& seqMap, string label, bool& getCutoff, string& origCutoff){ - truePositives = 0; - falsePositives = 0; - trueNegatives = 0; - falseNegatives = 0; + try { if(getCutoff == 1){ if(label != "unique"){ origCutoff = label; convert(label, cutoff); - if(hard == 0){ cutoff += (0.49 / double(precision)); } + if(!hard){ cutoff += (0.49 / double(precision)); } } else{ origCutoff = "unique"; @@ -378,216 +297,138 @@ int SensSpecCommand::process(map& seqMap, string label, bool& getCu } } - m->mothurOut(label); m->mothurOutEndLine(); - - for(int i=0;icontrol_pressed) { return 0; } - - phylipFile >> seqName; - otuIndices[i] = seqMap[seqName]; - - for(int j=0;j> distance; - - if(distance <= cutoff){ - if(otuIndices[i] == otuIndices[j]) { truePositives++; } - else { falseNegatives++; } - } - else{ - if(otuIndices[i] == otuIndices[j]) { falsePositives++; } - else { trueNegatives++; } - } - } - - if (square) { m->getline(phylipFile); } //get rest of line - redundant distances - m->gobble(phylipFile); - } - phylipFile.close(); + int lNumSeqs = seqMap.size(); - outputStatistics(label, origCutoff); + //could segfault out if there are sequences in phylip-formatted distance + //matrix that aren't in the list file + if(format == "phylip"){ + truePositives = 0; + falsePositives = 0; + trueNegatives = 0; + falseNegatives = 0; - return 0; - } - catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "process"); - exit(1); - } -} -//*************************************************************************************************************** -int SensSpecCommand::process(set& seqPairSet, string label, bool& getCutoff, string& origCutoff, int numSeqs){ - try { - int numDists = (numSeqs * (numSeqs-1) / 2); + ifstream phylipFile; + m->openInputFile(distFile, phylipFile); + int pNumSeqs; + phylipFile >> pNumSeqs; - ifstream columnFile; - m->openInputFile(distFile, columnFile); - string seqNameA, seqNameB, seqPairString; - double distance; + string seqName; + double distance; + vector otuIndices(lNumSeqs, -1); - truePositives = 0; - falsePositives = 0; - trueNegatives = numDists; - falseNegatives = 0; + m->mothurOut(label); m->mothurOutEndLine(); - if(getCutoff == 1){ - if(label != "unique"){ - origCutoff = label; - convert(label, cutoff); - if(hard == 0){ cutoff += (0.49 / double(precision)); } - } - else{ - origCutoff = "unique"; - cutoff = 0.0000; - } - } + for(int i=0;imothurOut(label); m->mothurOutEndLine(); + if (m->control_pressed) { return 0; } - while(columnFile){ - columnFile >> seqNameA >> seqNameB >> distance; - if(seqNameA < seqNameB) { seqPairString = seqNameA + '\t' + seqNameB; } - else { seqPairString = seqNameB + '\t' + seqNameA; } + phylipFile >> seqName; + otuIndices[i] = seqMap[seqName]; - set::iterator it = seqPairSet.find(seqPairString); + for(int j=0;j> distance; - if(distance <= cutoff){ - if(it != seqPairSet.end()){ - truePositives++; - seqPairSet.erase(it); - } - else{ - falseNegatives++; + if(distance <= cutoff){ + if(otuIndices[i] == otuIndices[j]) { truePositives++; } + else { falseNegatives++; } + } + else{ + if(otuIndices[i] == otuIndices[j]) { falsePositives++; } + else { trueNegatives++; } + } } - trueNegatives--; - } - else if(it != seqPairSet.end()){ - falsePositives++; - trueNegatives--; - seqPairSet.erase(it); - } - m->gobble(columnFile); + m->getline(phylipFile); //get rest of line if square + m->gobble(phylipFile); + } + phylipFile.close(); } - falsePositives += seqPairSet.size(); - - outputStatistics(label, origCutoff); - - - return 0; - } - catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "process"); - exit(1); - } -} - -//*************************************************************************************************************** - -int SensSpecCommand::processPhylip(){ - try{ - //probably need some checking to confirm that the names in the distance matrix are the same as those in the list file - square = testFile(); - string origCutoff = ""; - bool getCutoff = 0; - - if(cutoff == -1.00) { getCutoff = 1; } - else if(!hard) { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } + else if(format == "column"){ + truePositives = 0; + falsePositives = 0; + trueNegatives = 0; + falseNegatives = 0; - map seqMap; - string seqList; + ifstream columnFile; + m->openInputFile(distFile, columnFile); - InputData input(listFile, "list"); - ListVector* list = input.getListVector(); - string lastLabel = list->getLabel(); + string seqNameA, seqNameB; + float distance; + map distanceMap; - //if the users enters label "0.06" and there is no "0.06" in their file use the next lowest label. - set processedLabels; - set userLabels = labels; + while(columnFile){ + columnFile >> seqNameA >> seqNameB >> distance; - while((list != NULL) && ((allLines == 1) || (userLabels.size() != 0))) { + string seqPairString; + if(seqNameA < seqNameB) { seqPairString = seqNameA + '\t' + seqNameB; } + else { seqPairString = seqNameB + '\t' + seqNameA; } - if(m->control_pressed){ - for (int i = 0; i < outputNames.size(); i++){ m->mothurRemove(outputNames[i]); } delete list; return 0; - } - - if(allLines == 1 || labels.count(list->getLabel()) == 1){ - processedLabels.insert(list->getLabel()); - userLabels.erase(list->getLabel()); + if(distance <= cutoff){ + distanceMap[seqPairString] = distance; + } - //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); + m->gobble(columnFile); } - if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { - string saveLabel = list->getLabel(); - - delete list; - list = input.getListVector(lastLabel); - - processedLabels.insert(list->getLabel()); - userLabels.erase(list->getLabel()); + for(map::iterator itA=seqMap.begin(); itA!=seqMap.end(); itA++){ + for(map::iterator itB=seqMap.begin(); itB!=itA; itB++){ - //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); - - //restore real lastlabel to save below - list->setLabel(saveLabel); - } + string seqPairString; + if(itA->first < itB->first) { seqPairString = itA->first + '\t' + itB->first; } + else { seqPairString = itB->first + '\t' + itA->first; } - lastLabel = list->getLabel(); + if(itA->second == itB->second){ - delete list; - list = input.getListVector(); - } + map::iterator itD = distanceMap.find(seqPairString); + if( itD != distanceMap.end() ){ + truePositives++; + distanceMap.erase(itD); + } + else{ + falsePositives++; + } + } + else { + map::iterator itD = distanceMap.find(seqPairString); + + if(itD != distanceMap.end()){ + falseNegatives++; + distanceMap.erase(itD); + } + else{ + trueNegatives++; + } + } - //output error messages about any remaining user labels - set::iterator it; - bool needToRun = false; - for (it = userLabels.begin(); it != userLabels.end(); it++) { - m->mothurOut("Your file does not include the label " + *it); - if (processedLabels.count(lastLabel) != 1) { - m->mothurOut(". I will use " + lastLabel + "."); m->mothurOutEndLine(); - needToRun = true; - }else { - m->mothurOut(". Please refer to " + lastLabel + "."); m->mothurOutEndLine(); + } } } - //run last label if you need to - if (needToRun == true) { - if (list != NULL) { delete list; } - list = input.getListVector(lastLabel); - - //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); - delete list; - } + outputStatistics(label, origCutoff); return 0; } catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "processPhylip"); + m->errorOut(e, "SensSpecCommand", "process"); exit(1); } } //*************************************************************************************************************** -int SensSpecCommand::processColumn(){ +int SensSpecCommand::processListFile(){ try{ + string origCutoff = ""; bool getCutoff = 0; if(cutoff == -1.00) { getCutoff = 1; } - else if(!hard) { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } + else if( !hard ) { origCutoff = toString(cutoff); cutoff += (0.49 / double(precision)); } + else { origCutoff = toString(cutoff); } - set seqPairSet; - int numSeqs = 0; + map seqMap; InputData input(listFile, "list"); ListVector* list = input.getListVector(); @@ -597,22 +438,21 @@ int SensSpecCommand::processColumn(){ set processedLabels; set userLabels = labels; - while((list != NULL) && ((allLines == 1) || (userLabels.size() != 0))) { if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete list; return 0; } if(allLines == 1 || labels.count(list->getLabel()) == 1){ - processedLabels.insert(list->getLabel()); userLabels.erase(list->getLabel()); //process - numSeqs = fillSeqPairSet(seqPairSet, list); - process(seqPairSet, list->getLabel(), getCutoff, origCutoff, numSeqs); + fillSeqMap(seqMap, list); + process(seqMap, list->getLabel(), getCutoff, origCutoff); } if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { + string saveLabel = list->getLabel(); delete list; @@ -622,20 +462,18 @@ int SensSpecCommand::processColumn(){ userLabels.erase(list->getLabel()); //process - numSeqs = fillSeqPairSet(seqPairSet, list); - process(seqPairSet, list->getLabel(), getCutoff, origCutoff, numSeqs); + fillSeqMap(seqMap, list); + process(seqMap, list->getLabel(), getCutoff, origCutoff); //restore real lastlabel to save below list->setLabel(saveLabel); } lastLabel = list->getLabel(); - delete list; list = input.getListVector(); } - //output error messages about any remaining user labels set::iterator it; bool needToRun = false; @@ -655,15 +493,16 @@ int SensSpecCommand::processColumn(){ list = input.getListVector(lastLabel); //process - numSeqs = fillSeqPairSet(seqPairSet, list); + fillSeqMap(seqMap, list); + process(seqMap, list->getLabel(), getCutoff, origCutoff); + delete list; - process(seqPairSet, list->getLabel(), getCutoff, origCutoff, numSeqs); } return 0; } catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "processColumn"); + m->errorOut(e, "SensSpecCommand", "processListFile"); exit(1); } } diff --git a/source/commands/sensspeccommand.h b/source/commands/sensspeccommand.h index bfa32913..ffd4dff6 100644 --- a/source/commands/sensspeccommand.h +++ b/source/commands/sensspeccommand.h @@ -17,30 +17,30 @@ #include "inputdata.h" class SensSpecCommand : public Command { - + public: SensSpecCommand(string); SensSpecCommand(); ~SensSpecCommand(){} - + vector setParameters(); string getCommandName() { return "sens.spec"; } string getCommandCategory() { return "OTU-Based Approaches"; } - - string getHelpString(); - string getOutputPattern(string); + + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nhttp://www.mothur.org/wiki/Sens.spec"; } string getDescription() { return "sens.spec"; } - int execute(); - void help() { m->mothurOut(getHelpString()); } - + int execute(); + void help() { m->mothurOut(getHelpString()); } + private: - int processPhylip(); - int processColumn(); + string preProcessList(); + int processListFile(); void setUpOutput(); void outputStatistics(string, string); - + string listFile, distFile, nameFile, sensSpecFileName, phylipfile, columnfile; string outputDir; string format; @@ -53,17 +53,9 @@ class SensSpecCommand : public Command { //string lineLabel; double cutoff; int precision; - + int fillSeqMap(map&, ListVector*&); - int fillSeqPairSet(set&, ListVector*&); int process(map&, string, bool&, string&); - int process(set&, string, bool&, string&, int); - string preProcessList(); - bool testFile(); - }; #endif - - - From 642ddb8380cb9524526280d9c08ddf92e123d211 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Tue, 11 Aug 2015 13:20:54 -0400 Subject: [PATCH 014/135] Optimize code to minimize searching --- source/commands/sensspeccommand.cpp | 147 ++++++++++++++++++++---------------- source/commands/sensspeccommand.h | 2 +- 2 files changed, 85 insertions(+), 64 deletions(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 1448a401..04d32d1e 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -256,11 +256,14 @@ int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ int seqListLength = seqList.length(); string seqName = ""; - //parse bin by name, mapping each name to its otu number + vector otuVector; + + //parse bin by name... for(int j=0;j& seqMap, ListVector*& list){ } } - seqMap[seqName] = i; + otuVector.push_back(seqName); + + // indicate that a pair of sequences are in the same OTU; will + // assume that if they don't show up in the map that they're in + // different OTUs + for(int i=0;igetNumSeqs(); } catch(exception& e) { m->errorOut(e, "SensSpecCommand", "fillSeqMap"); @@ -281,7 +299,7 @@ int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ //*************************************************************************************************************** -int SensSpecCommand::process(map& seqMap, string label, bool& getCutoff, string& origCutoff){ +int SensSpecCommand::process(map& seqMap, int nSeqs, string label, bool& getCutoff, string& origCutoff){ try { @@ -297,10 +315,8 @@ int SensSpecCommand::process(map& seqMap, string label, bool& getCu } } - int lNumSeqs = seqMap.size(); - - //could segfault out if there are sequences in phylip-formatted distance - //matrix that aren't in the list file + //could segfault out if there are sequences in phylip-formatted distance + //matrix that aren't in the list file if(format == "phylip"){ truePositives = 0; falsePositives = 0; @@ -314,8 +330,8 @@ int SensSpecCommand::process(map& seqMap, string label, bool& getCu string seqName; double distance; - vector otuIndices(lNumSeqs, -1); - + //vector otuIndices(lNumSeqs, -1); + vector seqNameVector; m->mothurOut(label); m->mothurOutEndLine(); for(int i=0;i& seqMap, string label, bool& getCu if (m->control_pressed) { return 0; } phylipFile >> seqName; - otuIndices[i] = seqMap[seqName]; + seqNameVector.push_back(seqName); + + //otuIndices[i] = seqMap[seqName]; for(int j=0;j> distance; - if(distance <= cutoff){ - if(otuIndices[i] == otuIndices[j]) { truePositives++; } - else { falseNegatives++; } + string seqNamePair; + if(seqNameVector[i] < seqNameVector[j]){ + seqNamePair = seqNameVector[i] + '-' + seqNameVector[j]; + } else { + seqNamePair = seqNameVector[j] + '-' + seqNameVector[i]; } - else{ - if(otuIndices[i] == otuIndices[j]) { falsePositives++; } - else { trueNegatives++; } + + if(distance <= cutoff){ + + map::iterator it = seqMap.find(seqNamePair); + + if(it != seqMap.end()){ + truePositives++; + seqMap.erase(it); + } else { + falseNegatives++; + } + + } else { + + map::iterator it = seqMap.find(seqNamePair); + + if(it != seqMap.end()){ + falsePositives++; + seqMap.erase(it); + } else { + trueNegatives++; + } + } + + + + } m->getline(phylipFile); //get rest of line if square @@ -354,56 +398,33 @@ int SensSpecCommand::process(map& seqMap, string label, bool& getCu string seqNameA, seqNameB; float distance; - map distanceMap; while(columnFile){ columnFile >> seqNameA >> seqNameB >> distance; - - string seqPairString; - if(seqNameA < seqNameB) { seqPairString = seqNameA + '\t' + seqNameB; } - else { seqPairString = seqNameB + '\t' + seqNameA; } - - - if(distance <= cutoff){ - distanceMap[seqPairString] = distance; - } - m->gobble(columnFile); - } - - for(map::iterator itA=seqMap.begin(); itA!=seqMap.end(); itA++){ - for(map::iterator itB=seqMap.begin(); itB!=itA; itB++){ - - string seqPairString; - if(itA->first < itB->first) { seqPairString = itA->first + '\t' + itB->first; } - else { seqPairString = itB->first + '\t' + itA->first; } - if(itA->second == itB->second){ - - map::iterator itD = distanceMap.find(seqPairString); + if(distance <= cutoff){ + string seqNamePair; - if( itD != distanceMap.end() ){ - truePositives++; - distanceMap.erase(itD); - } - else{ - falsePositives++; - } + if(seqNameA < seqNameB){ + seqNamePair = seqNameA + '-' + seqNameB; + } else { + seqNamePair = seqNameB + '-' + seqNameA; } - else { - map::iterator itD = distanceMap.find(seqPairString); - if(itD != distanceMap.end()){ - falseNegatives++; - distanceMap.erase(itD); - } - else{ - trueNegatives++; - } - } + map::iterator it = seqMap.find(seqNamePair); + if(it != seqMap.end()) { + truePositives++; + seqMap.erase(it); + } else { + cout << seqNamePair << endl; + falseNegatives++; + } } } + falsePositives = seqMap.size(); + trueNegatives = nSeqs * (nSeqs-1)/2 - (falsePositives + falseNegatives + truePositives); } @@ -447,8 +468,8 @@ int SensSpecCommand::processListFile(){ userLabels.erase(list->getLabel()); //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); + int numSeqs = fillSeqMap(seqMap, list); + process(seqMap, numSeqs, list->getLabel(), getCutoff, origCutoff); } if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { @@ -462,8 +483,8 @@ int SensSpecCommand::processListFile(){ userLabels.erase(list->getLabel()); //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); + int numSeqs = fillSeqMap(seqMap, list); + process(seqMap, numSeqs, list->getLabel(), getCutoff, origCutoff); //restore real lastlabel to save below list->setLabel(saveLabel); @@ -493,8 +514,8 @@ int SensSpecCommand::processListFile(){ list = input.getListVector(lastLabel); //process - fillSeqMap(seqMap, list); - process(seqMap, list->getLabel(), getCutoff, origCutoff); + int numSeqs = fillSeqMap(seqMap, list); + process(seqMap, numSeqs, list->getLabel(), getCutoff, origCutoff); delete list; } diff --git a/source/commands/sensspeccommand.h b/source/commands/sensspeccommand.h index ffd4dff6..b5f1d916 100644 --- a/source/commands/sensspeccommand.h +++ b/source/commands/sensspeccommand.h @@ -55,7 +55,7 @@ class SensSpecCommand : public Command { int precision; int fillSeqMap(map&, ListVector*&); - int process(map&, string, bool&, string&); + int process(map&, int, string, bool&, string&); }; #endif From 7c5ec42bff57121db9f852588eaf868a50401284 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Tue, 11 Aug 2015 15:16:32 -0400 Subject: [PATCH 015/135] Change how we parsed by commas --- source/commands/sensspeccommand.cpp | 30 ++++++++++++++++-------------- 1 file changed, 16 insertions(+), 14 deletions(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 04d32d1e..068f9df8 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -248,30 +248,30 @@ int SensSpecCommand::execute(){ int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ try { //for each otu - for(int i=0;igetNumBins();i++){ + cout << list->getNumBins() << endl; + for(int i=0;igetNumBins();i++){ if (m->control_pressed) { return 0; } string seqList = list->get(i); int seqListLength = seqList.length(); - string seqName = ""; - vector otuVector; //parse bin by name... + int nSeqs = 1; for(int j=0;j otuVector(nSeqs); + int index = 0; + string seqName = ""; + istringstream seqListStream(seqList); + while(getline(seqListStream, seqName, ',')) { + otuVector[index++] = seqName; } - otuVector.push_back(seqName); // indicate that a pair of sequences are in the same OTU; will // assume that if they don't show up in the map that they're in @@ -288,7 +288,7 @@ int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ } } } - + cout << list->getNumSeqs() << endl; return list->getNumSeqs(); } catch(exception& e) { @@ -399,6 +399,9 @@ int SensSpecCommand::process(map& seqMap, int nSeqs, string label, string seqNameA, seqNameB; float distance; + cout << seqMap.size() << endl; + cout.flush(); + while(columnFile){ columnFile >> seqNameA >> seqNameB >> distance; m->gobble(columnFile); @@ -418,7 +421,6 @@ int SensSpecCommand::process(map& seqMap, int nSeqs, string label, truePositives++; seqMap.erase(it); } else { - cout << seqNamePair << endl; falseNegatives++; } } From c84cb222753a0df6a2b704c54208731b6d2a9a10 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Wed, 12 Aug 2015 13:38:54 -0400 Subject: [PATCH 016/135] Read in distances, then traverse list file --- source/commands/sensspeccommand.cpp | 183 ++++++++++++++---------------------- source/commands/sensspeccommand.h | 4 +- 2 files changed, 72 insertions(+), 115 deletions(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 068f9df8..0e263621 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -245,64 +245,14 @@ int SensSpecCommand::execute(){ //*************************************************************************************************************** -int SensSpecCommand::fillSeqMap(map& seqMap, ListVector*& list){ - try { - //for each otu - cout << list->getNumBins() << endl; - - for(int i=0;igetNumBins();i++){ - if (m->control_pressed) { return 0; } - - string seqList = list->get(i); - int seqListLength = seqList.length(); - - - //parse bin by name... - int nSeqs = 1; - for(int j=0;j otuVector(nSeqs); - int index = 0; - string seqName = ""; - - istringstream seqListStream(seqList); - while(getline(seqListStream, seqName, ',')) { - otuVector[index++] = seqName; - } - - // indicate that a pair of sequences are in the same OTU; will - // assume that if they don't show up in the map that they're in - // different OTUs - for(int i=0;igetNumSeqs() << endl; - return list->getNumSeqs(); - } - catch(exception& e) { - m->errorOut(e, "SensSpecCommand", "fillSeqMap"); - exit(1); - } -} - -//*************************************************************************************************************** - -int SensSpecCommand::process(map& seqMap, int nSeqs, string label, bool& getCutoff, string& origCutoff){ +int SensSpecCommand::process(map& seqMap, ListVector*& list, bool& getCutoff, string& origCutoff){ try { + string label = list->getLabel(); + int numSeqs = list->getNumSeqs(); + int numOTUs = list->getNumBins(); + if(getCutoff == 1){ if(label != "unique"){ origCutoff = label; @@ -315,71 +265,49 @@ int SensSpecCommand::process(map& seqMap, int nSeqs, string label, } } + truePositives = 0; + falsePositives = 0; + trueNegatives = 0; + falseNegatives = 0; + + map distanceMap; + //could segfault out if there are sequences in phylip-formatted distance //matrix that aren't in the list file if(format == "phylip"){ - truePositives = 0; - falsePositives = 0; - trueNegatives = 0; - falseNegatives = 0; ifstream phylipFile; m->openInputFile(distFile, phylipFile); int pNumSeqs; phylipFile >> pNumSeqs; - string seqName; double distance; - //vector otuIndices(lNumSeqs, -1); - vector seqNameVector; + + vector seqNameVector(pNumSeqs); m->mothurOut(label); m->mothurOutEndLine(); for(int i=0;icontrol_pressed) { return 0; } - phylipFile >> seqName; - seqNameVector.push_back(seqName); + phylipFile >> seqNameVector[i]; //otuIndices[i] = seqMap[seqName]; for(int j=0;j> distance; - string seqNamePair; - if(seqNameVector[i] < seqNameVector[j]){ - seqNamePair = seqNameVector[i] + '-' + seqNameVector[j]; - } else { - seqNamePair = seqNameVector[j] + '-' + seqNameVector[i]; - } - if(distance <= cutoff){ - map::iterator it = seqMap.find(seqNamePair); - - if(it != seqMap.end()){ - truePositives++; - seqMap.erase(it); + string seqNamePair; + if(seqNameVector[i] < seqNameVector[j]){ + seqNamePair = seqNameVector[i] + '-' + seqNameVector[j]; } else { - falseNegatives++; - } - - } else { - - map::iterator it = seqMap.find(seqNamePair); - - if(it != seqMap.end()){ - falsePositives++; - seqMap.erase(it); - } else { - trueNegatives++; + seqNamePair = seqNameVector[j] + '-' + seqNameVector[i]; } + distanceMap[seqNamePair] = distance; } - - - - } m->getline(phylipFile); //get rest of line if square @@ -388,10 +316,6 @@ int SensSpecCommand::process(map& seqMap, int nSeqs, string label, phylipFile.close(); } else if(format == "column"){ - truePositives = 0; - falsePositives = 0; - trueNegatives = 0; - falseNegatives = 0; ifstream columnFile; m->openInputFile(distFile, columnFile); @@ -399,9 +323,6 @@ int SensSpecCommand::process(map& seqMap, int nSeqs, string label, string seqNameA, seqNameB; float distance; - cout << seqMap.size() << endl; - cout.flush(); - while(columnFile){ columnFile >> seqNameA >> seqNameB >> distance; m->gobble(columnFile); @@ -414,21 +335,59 @@ int SensSpecCommand::process(map& seqMap, int nSeqs, string label, } else { seqNamePair = seqNameB + '-' + seqNameA; } + distanceMap[seqNamePair] = distance; + } + } + columnFile.close(); + } - map::iterator it = seqMap.find(seqNamePair); + for(int otu=0;otucontrol_pressed) { return 0; } - if(it != seqMap.end()) { + // get the sequence string from the list vector + string seqList = list->get(otu); + + //count number of sequences in the bin + int nSeqsInOTU = 1; + for(int i=0;i otuVector(nSeqsInOTU); + while(getline(seqListStream, seqName, ',')) { + otuVector[index++] = seqName; + } + + // indicate that a pair of sequences are in the same OTU; will + // assume that if they don't show up in the map that they're in + // different OTUs + for(int i=0;i::iterator it = distanceMap.find(seqNamePair); + + if(it != distanceMap.end()){ truePositives++; - seqMap.erase(it); + distanceMap.erase(it); } else { - falseNegatives++; + falsePositives++; } } } - falsePositives = seqMap.size(); - trueNegatives = nSeqs * (nSeqs-1)/2 - (falsePositives + falseNegatives + truePositives); } - + falseNegatives = distanceMap.size(); + trueNegatives = numSeqs * (numSeqs-1)/2 - (falsePositives + falseNegatives + truePositives); outputStatistics(label, origCutoff); @@ -470,8 +429,8 @@ int SensSpecCommand::processListFile(){ userLabels.erase(list->getLabel()); //process - int numSeqs = fillSeqMap(seqMap, list); - process(seqMap, numSeqs, list->getLabel(), getCutoff, origCutoff); + // int numSeqs = fillSeqMap(seqMap, list); + process(seqMap, list, getCutoff, origCutoff); } if ((m->anyLabelsToProcess(list->getLabel(), userLabels, "") == true) && (processedLabels.count(lastLabel) != 1)) { @@ -485,8 +444,8 @@ int SensSpecCommand::processListFile(){ userLabels.erase(list->getLabel()); //process - int numSeqs = fillSeqMap(seqMap, list); - process(seqMap, numSeqs, list->getLabel(), getCutoff, origCutoff); + //int numSeqs = fillSeqMap(seqMap, list); + process(seqMap, list, getCutoff, origCutoff); //restore real lastlabel to save below list->setLabel(saveLabel); @@ -516,8 +475,8 @@ int SensSpecCommand::processListFile(){ list = input.getListVector(lastLabel); //process - int numSeqs = fillSeqMap(seqMap, list); - process(seqMap, numSeqs, list->getLabel(), getCutoff, origCutoff); + //int numSeqs = fillSeqMap(seqMap, list); + process(seqMap, list, getCutoff, origCutoff); delete list; } diff --git a/source/commands/sensspeccommand.h b/source/commands/sensspeccommand.h index b5f1d916..1ff564ce 100644 --- a/source/commands/sensspeccommand.h +++ b/source/commands/sensspeccommand.h @@ -50,12 +50,10 @@ class SensSpecCommand : public Command { long int truePositives, falsePositives, trueNegatives, falseNegatives; bool abort, allLines, square; bool hard; - //string lineLabel; double cutoff; int precision; - int fillSeqMap(map&, ListVector*&); - int process(map&, int, string, bool&, string&); + int process(map&, ListVector*&, bool&, string&); }; #endif From 4801ab0712fe20b6d7d919c9a15560a8cf2c1950 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 12 Aug 2015 18:33:42 -0400 Subject: [PATCH 017/135] Adds reads to biom.info for taxonomy info Issue #82 --- source/commandfactory.cpp | 2 +- source/commands/biominfocommand.cpp | 47 +++++++++++++++++++++++++------------ source/commands/biominfocommand.h | 2 +- source/mothurout.cpp | 11 +++++---- 4 files changed, 40 insertions(+), 22 deletions(-) diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index ed7f0017..fa2ef2ff 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -414,7 +414,7 @@ int CommandFactory::checkForRedirects(string optionString) { random = time(NULL); seed = true; }else { - if (m->isInteger(intputOption)) { m->mothurConvert(intputOption, random); seed=true; } + if (m->isNumeric1(intputOption)) { m->mothurConvert(intputOption, random); seed=true; } else { m->mothurOut("[ERROR]: Seed must be an integer."); m->mothurOutEndLine(); seed = false;} } diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index c4a5bfeb..d107b386 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -287,6 +287,7 @@ int BiomInfoCommand::createSharedFromBiom() { if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + vector conTaxonomy; it = fileLines.find("rows"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a rows provided.\n"); } else { @@ -297,7 +298,9 @@ int BiomInfoCommand::createSharedFromBiom() { ofstream outMap; m->openOutputFile(mapFilename, outMap); - vector taxonomies = readRows(thisLine, numRows); + bool hasTaxonomy = false; + vector< vector > results = readRows(thisLine, numRows, hasTaxonomy); + vector taxonomies = results[0]; string snumBins = toString(numRows); for (int i = 0; i < numRows; i++) { @@ -315,7 +318,12 @@ int BiomInfoCommand::createSharedFromBiom() { outMap << otuNames[i] << '\t' << taxonomies[i] << endl; } outMap.close(); - }else{ otuNames = readRows(thisLine, numRows); } + }else{ + bool hasTaxonomy = false; + vector< vector > results = readRows(thisLine, numRows, hasTaxonomy); + otuNames = results[0]; + if (hasTaxonomy) { conTaxonomy = results[1]; } + } } if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } @@ -326,7 +334,13 @@ int BiomInfoCommand::createSharedFromBiom() { string thisLine = it->second; //read sample names - groupNames = readRows(thisLine, numCols); + bool hasTaxonomy = false; + vector< vector > results = readRows(thisLine, numCols, hasTaxonomy); + groupNames = results[0]; + if (hasTaxonomy) { + /////////////////////write taxonomy file//////////////////////// + //////////////write tax.summary ////////////////// + } //if users selected groups, then remove the groups not wanted. SharedUtil util; @@ -367,11 +381,15 @@ int BiomInfoCommand::createSharedFromBiom() { m->mothurOutEndLine(); m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine(); lookup[0]->printHeaders(out); printSharedData(lookup, out); + + if (conTaxonomy.size() != 0) { + ////////////// write constaxonomy ////////////////// + //////////////write tax.summary ////////////////// + } + + for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } } - //for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { delete it3->second; } - //out.close(); - if (m->control_pressed) { m->mothurRemove(filename); return 0; } return 0; @@ -566,7 +584,7 @@ int BiomInfoCommand::getDims(string line, int& shapeNumRows, int& shapeNumCols) } } //********************************************************************************************************************** -vector BiomInfoCommand::readRows(string line, int& numRows) { +vector< vector > BiomInfoCommand::readRows(string line, int& numRows, bool& allBlank) { try { /*"rows":[ {"id":"Otu01", "metadata":{"taxonomy":["Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Porphyromonadaceae", "unclassified"], "bootstrap":[100, 100, 100, 100, 100, 100]}}, @@ -582,17 +600,18 @@ vector BiomInfoCommand::readRows(string line, int& numRows) { ],*/ - vector names; + vector< vector > results; results.resize(2); int countOpenBrace = 0; int countClosedBrace = 0; int openParen = 0; int closeParen = 0; string nextRow = ""; bool end = false; + allBlank = true; for (int i = 0; i < line.length(); i++) { - if (m->control_pressed) { return names; } + if (m->control_pressed) { return results; } if (line[i] == '[') { countOpenBrace++; } else if (line[i] == ']') { countClosedBrace++; } @@ -605,10 +624,8 @@ vector BiomInfoCommand::readRows(string line, int& numRows) { if ((openParen == closeParen) && (closeParen != 0)) { //process row numRows++; - cout << nextRow << endl; - vector results = getNamesAndTaxonomies(nextRow); - names.push_back(results[0]); - cout << results[0] << '\t' << results[1] << endl; + vector result = getNamesAndTaxonomies(nextRow); + if (result.size() != 0) { results[0].push_back(result[0]); results[1].push_back(result[1]); if (result[1] != "") { allBlank = false; } } nextRow = ""; openParen = 0; @@ -617,7 +634,7 @@ vector BiomInfoCommand::readRows(string line, int& numRows) { } - return names; + return results; } catch(exception& e) { m->errorOut(e, "BiomInfoCommand", "readRows"); @@ -647,7 +664,7 @@ vector BiomInfoCommand::getNamesAndTaxonomies(string line) { int pos = line.find_first_of(','); if (pos == string::npos) { //some kind of error?? we expect at least metadata : null, just grab name - results.push_back(getName(line)); + results.push_back(getName(line)); results.push_back(""); }else { string value; m->splitAtComma(value, line); //value hold name portion ("id":"Otu01") line holds rest diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h index 885132b0..dafa9120 100644 --- a/source/commands/biominfocommand.h +++ b/source/commands/biominfocommand.h @@ -42,7 +42,7 @@ class BiomInfoCommand : public Command { string getTag(string&); string getName(string); string getTaxonomy(string, string); - vector readRows(string, int&); + vector< vector > readRows(string, int&, bool&); int getDims(string, int&, int&); vector readData(string, string, string, vector&, int); vector getNamesAndTaxonomies(string); diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 4578e434..ddbff9d5 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -3537,7 +3537,7 @@ bool MothurOut::mothurConvert(string item, int& num){ return error; } catch(exception& e) { - errorOut(e, "MothurOut", "mothurConvert"); + errorOut(e, "MothurOut", "mothurConvert-int"); exit(1); } } @@ -3558,7 +3558,7 @@ bool MothurOut::mothurConvert(string item, intDist& num){ return error; } catch(exception& e) { - errorOut(e, "MothurOut", "mothurConvert"); + errorOut(e, "MothurOut", "mothurConvert-intDist"); exit(1); } } @@ -3568,7 +3568,8 @@ bool MothurOut::isNumeric1(string stringToCheck){ try { bool numeric = false; - if(stringToCheck.find_first_not_of("0123456789.-") == string::npos) { numeric = true; } + if (stringToCheck == "") { numeric = false; } + else if(stringToCheck.find_first_not_of("0123456789.-") == string::npos) { numeric = true; } return numeric; } @@ -3625,7 +3626,7 @@ bool MothurOut::mothurConvert(string item, float& num){ return error; } catch(exception& e) { - errorOut(e, "MothurOut", "mothurConvert"); + errorOut(e, "MothurOut", "mothurConvert-float"); exit(1); } } @@ -3646,7 +3647,7 @@ bool MothurOut::mothurConvert(string item, double& num){ return error; } catch(exception& e) { - errorOut(e, "MothurOut", "mothurConvert"); + errorOut(e, "MothurOut", "mothurConvert-double"); exit(1); } } From 8c451a88868b9a6b6dcabe6cd84fcdf1856cc9d4 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Thu, 13 Aug 2015 10:46:43 -0400 Subject: [PATCH 018/135] Add note indicating that only unique sequences should be used --- source/commands/sensspeccommand.cpp | 2 ++ 1 file changed, 2 insertions(+) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 0e263621..b2ac6f89 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -199,6 +199,8 @@ SensSpecCommand::SensSpecCommand(string option) { variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(listFile)); sensSpecFileName = getOutputFileName("sensspec",variables); } + + m->mothurOut("NOTE: It only makes sense to run sens.spec with a set of unique sequences."); m->mothurOutEndLine(); } catch(exception& e) { m->errorOut(e, "SensSpecCommand", "SensSpecCommand"); From b834652c3eec5cc6687d0c688a1e42c4011cb8f9 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Thu, 13 Aug 2015 10:49:13 -0400 Subject: [PATCH 019/135] Add note indicating that we assume only unique sequences are used --- source/commands/sensspeccommand.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index b2ac6f89..29ccec84 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -200,7 +200,7 @@ SensSpecCommand::SensSpecCommand(string option) { sensSpecFileName = getOutputFileName("sensspec",variables); } - m->mothurOut("NOTE: It only makes sense to run sens.spec with a set of unique sequences."); m->mothurOutEndLine(); + m->mothurOut("NOTE: sens.spec assumes that you only unique sequences were used to generate the distance matrix."); m->mothurOutEndLine(); } catch(exception& e) { m->errorOut(e, "SensSpecCommand", "SensSpecCommand"); From 2cede10d2f0977f25ff288ff1230f833711b7002 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Thu, 13 Aug 2015 10:55:18 -0400 Subject: [PATCH 020/135] Add whitespace around note --- source/commands/sensspeccommand.cpp | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 29ccec84..5b8b7848 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -200,7 +200,10 @@ SensSpecCommand::SensSpecCommand(string option) { sensSpecFileName = getOutputFileName("sensspec",variables); } - m->mothurOut("NOTE: sens.spec assumes that you only unique sequences were used to generate the distance matrix."); m->mothurOutEndLine(); + m->mothurOutEndLine(); + m->mothurOut("NOTE: sens.spec assumes that only unique sequences were used to generate the distance matrix."); + m->mothurOutEndLine(); + m->mothurOutEndLine(); } catch(exception& e) { m->errorOut(e, "SensSpecCommand", "SensSpecCommand"); From 8787c00d9776df4681232d61182b420fd68e5528 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Thu, 13 Aug 2015 11:30:54 -0400 Subject: [PATCH 021/135] Require name file if a column distance matrix is provided --- source/commands/sensspeccommand.cpp | 40 ++++++++++++++++++++++++++++--------- source/commands/sensspeccommand.h | 2 +- 2 files changed, 32 insertions(+), 10 deletions(-) diff --git a/source/commands/sensspeccommand.cpp b/source/commands/sensspeccommand.cpp index 5b8b7848..aad48d49 100644 --- a/source/commands/sensspeccommand.cpp +++ b/source/commands/sensspeccommand.cpp @@ -15,6 +15,7 @@ vector SensSpecCommand::setParameters(){ CommandParameter plist("list", "InputTypes", "", "", "none", "none", "none","sensspec",false,true,true); parameters.push_back(plist); CommandParameter pphylip("phylip", "InputTypes", "", "", "PhylipColumn", "PhylipColumn", "none","",false,false); parameters.push_back(pphylip); CommandParameter pcolumn("column", "InputTypes", "", "", "PhylipColumn", "PhylipColumn", "none","",false,false); parameters.push_back(pcolumn); + CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "none","name",false,false,true); parameters.push_back(pname); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pcutoff("cutoff", "Number", "", "-1.00", "", "", "","",false,false); parameters.push_back(pcutoff); CommandParameter pprecision("precision", "Number", "", "100", "", "", "","",false,false); parameters.push_back(pprecision); @@ -132,6 +133,15 @@ SensSpecCommand::SensSpecCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["column"] = inputDir + it->second; } } + + it = parameters.find("name"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["name"] = inputDir + it->second; } + } + } //check for required parameters listFile = validParameter.validFile(parameters, "list", true); @@ -153,6 +163,12 @@ SensSpecCommand::SensSpecCommand(string option) { else if (columnfile == "not open") { abort = true; } else { distFile = columnfile; format = "column"; m->setColumnFile(columnfile); } + namefile = validParameter.validFile(parameters, "name", true); + if (namefile == "not found") { namefile = ""; } + else if (namefile == "not open") { namefile = ""; abort = true; } + else { m->setNameFile(namefile); } + + if ((phylipfile == "") && (columnfile == "")) { //is there are current file available for either of these? //give priority to column, then phylip columnfile = m->getColumnFile(); @@ -167,6 +183,13 @@ SensSpecCommand::SensSpecCommand(string option) { } }else if ((phylipfile != "") && (columnfile != "")) { m->mothurOut("When executing a sens.spec command you must enter ONLY ONE of the following: phylip or column."); m->mothurOutEndLine(); abort = true; } + if ((namefile == "") && (columnfile != "")) { + m->mothurOut("[ERROR]: you must provide a name file with a column file."); m->mothurOutEndLine(); abort = true; + } + + if ((namefile == "") && (phylipfile != "")) { + m->mothurOut("[WARNING]: there is no reason to include a name file with a phylip file. Ignoring..."); m->mothurOutEndLine(); abort = false; + } //if the user changes the output directory command factory will send this info to us in the output parameter outputDir = validParameter.validFile(parameters, "outputdir", false); @@ -586,18 +609,17 @@ string SensSpecCommand::preProcessList(){ } phylipFile.close(); }else { - ifstream columnFile; - m->openInputFile(distFile, columnFile); - string seqNameA, seqNameB; - double distance; + ifstream nameFileHandle; + m->openInputFile(namefile, nameFileHandle); + string uniqueSeqName, redundantSeqNames; - while(columnFile){ + while(nameFileHandle){ if (m->control_pressed) { return ""; } - columnFile >> seqNameA >> seqNameB >> distance; - uniqueNames.insert(seqNameA); uniqueNames.insert(seqNameB); - m->gobble(columnFile); + nameFileHandle >> uniqueSeqName >> redundantSeqNames; + uniqueNames.insert(uniqueSeqName); + m->gobble(nameFileHandle); } - columnFile.close(); + nameFileHandle.close(); } //read list file, if numSeqs > unique names then remove redundant names diff --git a/source/commands/sensspeccommand.h b/source/commands/sensspeccommand.h index 1ff564ce..6dcf74e4 100644 --- a/source/commands/sensspeccommand.h +++ b/source/commands/sensspeccommand.h @@ -41,7 +41,7 @@ class SensSpecCommand : public Command { void setUpOutput(); void outputStatistics(string, string); - string listFile, distFile, nameFile, sensSpecFileName, phylipfile, columnfile; + string listFile, distFile, sensSpecFileName, phylipfile, columnfile, namefile; string outputDir; string format; vector outputNames; From 093202c936941185b2729a315651f63a714929e9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 13 Aug 2015 16:57:34 -0400 Subject: [PATCH 022/135] Fixes bug in make.contigs when trimmed sequence names cause multiple matches in divide file This bug resulted in file mismatch errors. --- source/commands/makecontigscommand.cpp | 15 ++++++++++++--- 1 file changed, 12 insertions(+), 3 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 98f04cd0..992d80c5 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -2293,6 +2293,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect vector fastaFilePos; vector qfileFilePos; vector temp; + vector trimmedNamesFilePos; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) //set file positions for fasta file @@ -2348,7 +2349,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect firstSeqNames.erase(it); }else if (itTrimmed != trimmedNames.end()) { unsigned long long pos = in2.tellg(); - qfileFilePos.push_back(pos - input.length() - 1); + trimmedNamesFilePos.push_back(pos - input.length() - 1); trimmedNames.erase(itTrimmed); } } @@ -2358,6 +2359,8 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect } in2.close(); + if ((firstSeqNames.size() != 0) && (trimmedNames.size() == 0)) { qfileFilePos = trimmedNamesFilePos; } + //get last file position of reverse fasta[1] FILE * pFile; unsigned long long size; @@ -2394,6 +2397,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect } qfileFilePos.clear(); + trimmedNamesFilePos.clear(); if (qual.size() != 0) { firstSeqNames = copy; @@ -2424,7 +2428,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect firstSeqNames.erase(it); }else if (itTrimmed != trimmedNames.end()) { unsigned long long pos = inQual.tellg(); - qfileFilePos.push_back(pos - input.length() - 1); + trimmedNamesFilePos.push_back(pos - input.length() - 1); trimmedNames.erase(itTrimmed); } } @@ -2434,6 +2438,8 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect } inQual.close(); + if ((firstSeqNames.size() != 0) && (trimmedNames.size() == 0)) { qfileFilePos = trimmedNamesFilePos; } + //get last file position of reverse qual[0] FILE * pFile; unsigned long long size; @@ -2463,6 +2469,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect } firstSeqNames = copy; trimmedNames = tcopy; + trimmedNamesFilePos.clear(); if (qual[1] != "NONE") { ifstream inQual2; @@ -2488,7 +2495,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect firstSeqNames.erase(it); }else if (itTrimmed != trimmedNames.end()) { unsigned long long pos = inQual2.tellg(); - qfileFilePos.push_back(pos - input.length() - 1); + trimmedNamesFilePos.push_back(pos - input.length() - 1); trimmedNames.erase(itTrimmed); } } @@ -2498,6 +2505,8 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect } inQual2.close(); + if ((firstSeqNames.size() != 0) && (trimmedNames.size() == 0)) { temp = trimmedNamesFilePos; } + //get last file position of reverse qual[1] FILE * pFile2; From aa312f7dff6d512a449785f397c70859d0c8688c Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 17 Aug 2015 11:09:05 -0400 Subject: [PATCH 023/135] Added debug statements to trimOligos --- source/trimoligos.cpp | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/source/trimoligos.cpp b/source/trimoligos.cpp index 54d0f413..7e0321ba 100644 --- a/source/trimoligos.cpp +++ b/source/trimoligos.cpp @@ -2055,7 +2055,6 @@ vector TrimOligos::stripBarcode(Sequence& seq, int& group){ /********************************************************************/ vector TrimOligos::stripForward(Sequence& seq, int& group){ try { - string rawSequence = seq.getUnaligned(); vector success; success.push_back(pdiffs + 1000); //guilty until proven innocent @@ -2117,6 +2116,8 @@ vector TrimOligos::stripForward(Sequence& seq, int& group){ int numDiff = countDiffs(oligo, temp); + if (m->debug) { m->mothurOut("[DEBUG]: " + seq.getName() + " aligned fragment=" + temp + ", primer=" + oligo + ", numDiffs=" + toString(numDiff) + ".\n"); } + if(numDiff < minDiff){ minDiff = numDiff; minCount = 1; @@ -2226,6 +2227,8 @@ vector TrimOligos::stripForward(Sequence& seq, QualityScores& qual, int& gr int numDiff = countDiffs(oligo, temp); + if (m->debug) { m->mothurOut("[DEBUG]: " + seq.getName() + " aligned fragment=" + temp + ", primer=" + oligo + ", numDiffs=" + toString(numDiff) + ".\n"); } + if(numDiff < minDiff){ minDiff = numDiff; minCount = 1; From 41fd1805be404684f07f24c554fbe5fa92fba548 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 17 Aug 2015 13:22:04 -0400 Subject: [PATCH 024/135] Adds taxonomy, constaxonomy and tax summary to biom.info Issue #82 --- source/commands/biominfocommand.cpp | 257 +++++++++++++++++++++--------------- source/commands/biominfocommand.h | 10 +- 2 files changed, 160 insertions(+), 107 deletions(-) diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index d107b386..c1c6ea1d 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -15,7 +15,9 @@ vector BiomInfoCommand::setParameters(){ try { CommandParameter pbiom("biom", "InputTypes", "", "", "", "", "","",false,true, true); parameters.push_back(pbiom); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); - CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); + CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); + CommandParameter pbasis("basis", "Multiple", "otu-sequence", "otu", "", "", "","",false,false); parameters.push_back(pbasis); + CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -32,9 +34,13 @@ vector BiomInfoCommand::setParameters(){ string BiomInfoCommand::getHelpString(){ try { string helpString = ""; - helpString += "The biom.info command reads a biom file creates a shared file. If your biom file contains metadata mothur will also create taxonomy or constaxonomy files.\n"; - helpString += "The biom.info command parameters are biom and label. The biom parameter is required.\n"; + helpString += "The biom.info command reads a biom file creates a shared file. If your biom file contains metadata mothur will also create taxonomy or constaxonomy along with tax.summary files.\n"; + helpString += "The biom.info command parameters are biom, label and relabund. The biom parameter is required.\n"; helpString += "The label parameter allows you to enter a distance label to be used in the shared file created from your biom file.\n"; + helpString += "The relabund parameter allows you to indicate you want the tax.summary file values to be relative abundances rather than raw abundances. Default=F. \n"; + helpString += "The basis parameter allows you indicate what you want the summary file to represent, options are otu and sequence. Default is otu.\n"; + helpString += "For example consider the following basis=sequence could give Clostridiales 3 105, where 105 is the total number of sequences whose otu classified to Clostridiales.\n"; + helpString += "Now for basis=otu could give Clostridiales 3 7, where 7 is the number of otus that classified to Clostridiales.\n"; helpString += "The biom.info command should be in the following format: biom.info(biom=test.biom, label=0.03).\n"; helpString += "Note: No spaces between parameter labels (i.e. label), '=' and parameters (i.e. 0.03).\n"; return helpString; @@ -65,7 +71,7 @@ string BiomInfoCommand::getOutputPattern(string type) { //********************************************************************************************************************** BiomInfoCommand::BiomInfoCommand(){ try { - abort = true; calledHelp = true; + abort = true; calledHelp = true; maxLevel = 0; setParameters(); vector tempOutNames; outputTypes["taxonomy"] = tempOutNames; @@ -81,7 +87,7 @@ BiomInfoCommand::BiomInfoCommand(){ //********************************************************************************************************************** BiomInfoCommand::BiomInfoCommand(string option) { try { - abort = false; calledHelp = false; pickedGroups=false; + abort = false; calledHelp = false; maxLevel = 0; //allow user to run help if(option == "help") { help(); abort = true; calledHelp = true; } @@ -133,6 +139,14 @@ BiomInfoCommand::BiomInfoCommand(string option) { label = validParameter.validFile(parameters, "label", false); if (label == "not found") { label = "userLabel"; } + + string temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } + relabund = m->isTrue(temp); + + basis = validParameter.validFile(parameters, "basis", false); + if (basis == "not found") { basis = "otu"; } + + if ((basis != "otu") && (basis != "sequence")) { m->mothurOut("Invalid option for basis. basis options are otu and sequence, using otu."); m->mothurOutEndLine(); } } } @@ -184,11 +198,11 @@ int BiomInfoCommand::createSharedFromBiom() { map variables; variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(filename)); variables["[tag]"] = label; - filename = getOutputFileName("shared",variables); - outputNames.push_back(filename); outputTypes["shared"].push_back(filename); + string sharedFilename = getOutputFileName("shared",variables); + outputNames.push_back(sharedFilename); outputTypes["shared"].push_back(sharedFilename); ofstream out; - m->openOutputFile(filename, out); + m->openOutputFile(sharedFilename, out); /*{ "id":"/Users/SarahsWork/Desktop/release/temp.job2.shared-unique", @@ -264,7 +278,7 @@ int BiomInfoCommand::createSharedFromBiom() { // if ((biomType != "OTU table") && (biomType != "OTUtable") && (biomType != "Taxon table") && (biomType != "Taxontable")) { m->mothurOut("[ERROR]: " + biomType + " is not a valid biom type for mothur. Only types allowed are OTU table and Taxon table.\n"); m->control_pressed = true; } } - if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + if (m->control_pressed) { out.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } it = fileLines.find("matrix_type"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a matrix_type provided.\n"); } @@ -274,7 +288,7 @@ int BiomInfoCommand::createSharedFromBiom() { if ((matrixFormat != "sparse") && (matrixFormat != "dense")) { m->mothurOut("[ERROR]: " + matrixFormat + " is not a valid biom matrix_type for mothur. Types allowed are sparse and dense.\n"); m->control_pressed = true; } } - if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + if (m->control_pressed) { out.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } it = fileLines.find("matrix_element_type"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a matrix_element_type provided.\n"); } @@ -285,12 +299,13 @@ int BiomInfoCommand::createSharedFromBiom() { if (matrixElementType == "float") { m->mothurOut("[WARNING]: the shared file only uses integers, any float values will be rounded down to the nearest integer.\n"); } } - if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + if (m->control_pressed) { out.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } vector conTaxonomy; it = fileLines.find("rows"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a rows provided.\n"); } else { + maxLevel = 0; string thisLine = it->second; if ((biomType == "Taxon table") || (biomType == "Taxontable")) { string mapFilename = getOutputFileName("map",variables); @@ -326,7 +341,7 @@ int BiomInfoCommand::createSharedFromBiom() { } } - if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + if (m->control_pressed) { out.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } it = fileLines.find("columns"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a columns provided.\n"); } @@ -334,26 +349,55 @@ int BiomInfoCommand::createSharedFromBiom() { string thisLine = it->second; //read sample names + maxLevel = 0; bool hasTaxonomy = false; vector< vector > results = readRows(thisLine, numCols, hasTaxonomy); groupNames = results[0]; if (hasTaxonomy) { - /////////////////////write taxonomy file//////////////////////// - //////////////write tax.summary ////////////////// + //write taxonomy file + map variables; + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(filename)); + variables["[tag]"] = label; + string taxFilename = getOutputFileName("taxonomy",variables); + outputNames.push_back(taxFilename); outputTypes["taxonomy"].push_back(taxFilename); + ofstream outTax; + m->openOutputFile(taxFilename, outTax); + + GroupMap* g = NULL; + PhyloSummary taxaSum(g, relabund); + + for (int i = 0; i < results[1].size(); i++) { + if (m->control_pressed) { break; } + + string newTax = addUnclassifieds(results[1][i]); + outTax << results[0][i] << '\t' << newTax << endl; + + taxaSum.addSeqToTree(results[0][i], newTax); + } + outTax.close(); + + //write taxonomy file + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(filename)); + variables["[tag]"] = label; + variables["[tag2]"] = ""; + string taxSumFilename = getOutputFileName("taxsummary",variables); + outputNames.push_back(taxSumFilename); outputTypes["taxsummary"].push_back(taxSumFilename); + ofstream outTaxSum; + m->openOutputFile(taxSumFilename, outTaxSum); + + //write tax.summary + if (relabund) { taxaSum.print(outTaxSum, relabund); } + else { taxaSum.print(outTaxSum); } + + outTaxSum.close(); } - - //if users selected groups, then remove the groups not wanted. - SharedUtil util; - vector Groups = m->getGroups(); - vector allGroups = groupNames; - util.setGroups(Groups, allGroups); - m->setGroups(Groups); + m->setGroups(groupNames); //set fileroot fileroot = outputDir + m->getRootName(m->getSimpleName(biomfile)); } - if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + if (m->control_pressed) { out.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } it = fileLines.find("shape"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a shape provided.\n"); } @@ -367,7 +411,7 @@ int BiomInfoCommand::createSharedFromBiom() { if (shapeNumRows != numRows) { m->mothurOut("[ERROR]: shape indicates " + toString(shapeNumRows) + " rows, but I only read " + toString(numRows) + " rows.\n"); m->control_pressed = true; } } - if (m->control_pressed) { out.close(); m->mothurRemove(filename); return 0; } + if (m->control_pressed) { out.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } it = fileLines.find("data"); if (it == fileLines.end()) { m->mothurOut("[ERROR]: you file does not have a data provided.\n"); } @@ -383,14 +427,59 @@ int BiomInfoCommand::createSharedFromBiom() { printSharedData(lookup, out); if (conTaxonomy.size() != 0) { - ////////////// write constaxonomy ////////////////// - //////////////write tax.summary ////////////////// + //sanity check + if ((lookup[0]->getNumBins() == conTaxonomy.size()) && (lookup[0]->getNumBins() == otuNames.size())) { + //write taxonomy file + map variables; + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(filename)); + variables["[tag]"] = label; + string taxFilename = getOutputFileName("constaxonomy",variables); + outputNames.push_back(taxFilename); outputTypes["constaxonomy"].push_back(taxFilename); + ofstream outTax; + m->openOutputFile(taxFilename, outTax); + outTax << "OTU\tSize\tTaxonomy\n"; + + GroupMap* g = NULL; + PhyloSummary taxaSum(g, relabund); + + for (int i = 0; i < lookup[0]->getNumBins(); i++) { + if (m->control_pressed) { break; } + + int total = 0; + for (int j = 0; j < lookup.size(); j++) { total += lookup[j]->getAbundance(i); } + + string newTax = addUnclassifieds(conTaxonomy[i]); + outTax << otuNames[i] << '\t' << total << '\t' << newTax << endl; + + if (basis == "sequence") { + for (int k = 0; k < total; k++) { taxaSum.addSeqToTree(otuNames[i], newTax); } //one for each sequence in the otu + }else { + taxaSum.addSeqToTree(otuNames[i], newTax); //add otu + } + } + outTax.close(); + + //write taxonomy file + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(filename)); + variables["[tag]"] = label; + variables["[tag2]"] = "cons"; + string taxSumFilename = getOutputFileName("taxsummary",variables); + outputNames.push_back(taxSumFilename); outputTypes["taxsummary"].push_back(taxSumFilename); + ofstream outTaxSum; + m->openOutputFile(taxSumFilename, outTaxSum); + + //write tax.summary + if (relabund) { taxaSum.print(outTaxSum, relabund); } + else { taxaSum.print(outTaxSum); } + + outTaxSum.close(); + } } for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } } - if (m->control_pressed) { m->mothurRemove(filename); return 0; } + if (m->control_pressed) { for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } return 0; } @@ -399,6 +488,37 @@ int BiomInfoCommand::createSharedFromBiom() { exit(1); } } +/**************************************************************************************************/ +string BiomInfoCommand::addUnclassifieds(string tax) { + try{ + string newTax, taxon; + int level = 0; + + newTax = ""; + + //keep what you have counting the levels + while (tax.find_first_of(';') != -1) { + //get taxon + taxon = tax.substr(0,tax.find_first_of(';'))+';'; + tax = tax.substr(tax.find_first_of(';')+1, tax.length()); + newTax += taxon; + level++; + } + + //add "unclassified" until you reach maxLevel + while (level < maxLevel) { + newTax += "unclassified;"; + level++; + } + + return newTax; + } + catch(exception& e) { + m->errorOut(e, "BiomInfoCommand", "addUnclassifieds"); + exit(1); + } +} + //********************************************************************************************************************** vector BiomInfoCommand::readData(string matrixFormat, string line, string matrixElementType, vector& groupNames, int numOTUs) { try { @@ -469,24 +589,6 @@ vector BiomInfoCommand::readData(string matrixFormat, strin } } - - SharedUtil util; - bool remove = false; - if (pickedGroups) { - for (int i = 0; i < lookup.size(); i++) { - //if this sharedrabund is not from a group the user wants then delete it. - if (util.isValidGroup(lookup[i]->getGroup(), m->getGroups()) == false) { - remove = true; - delete lookup[i]; lookup[i] = NULL; - lookup.erase(lookup.begin()+i); - i--; - } - } - } - - if (remove) { eliminateZeroOTUS(lookup); } - - return lookup; } catch(exception& e) { @@ -495,63 +597,6 @@ vector BiomInfoCommand::readData(string matrixFormat, strin } } //********************************************************************************************************************** -int BiomInfoCommand::eliminateZeroOTUS(vector& thislookup) { - try { - - vector newLookup; - for (int i = 0; i < thislookup.size(); i++) { - SharedRAbundVector* temp = new SharedRAbundVector(); - temp->setLabel(thislookup[i]->getLabel()); - temp->setGroup(thislookup[i]->getGroup()); - newLookup.push_back(temp); - } - - //for each bin - vector newBinLabels; - string snumBins = toString(thislookup[0]->getNumBins()); - for (int i = 0; i < thislookup[0]->getNumBins(); i++) { - if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; } - - //look at each sharedRabund and make sure they are not all zero - bool allZero = true; - for (int j = 0; j < thislookup.size(); j++) { - if (thislookup[j]->getAbundance(i) != 0) { allZero = false; break; } - } - - //if they are not all zero add this bin - if (!allZero) { - for (int j = 0; j < thislookup.size(); j++) { - newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); - } - - //if there is a bin label use it otherwise make one - string binLabel = "Otu"; - string sbinNumber = toString(i+1); - if (sbinNumber.length() < snumBins.length()) { - int diff = snumBins.length() - sbinNumber.length(); - for (int h = 0; h < diff; h++) { binLabel += "0"; } - } - binLabel += sbinNumber; - if (i < m->currentSharedBinLabels.size()) { binLabel = m->currentSharedBinLabels[i]; } - - newBinLabels.push_back(binLabel); - } - } - - for (int j = 0; j < thislookup.size(); j++) { delete thislookup[j]; } - - thislookup = newLookup; - m->currentSharedBinLabels = newBinLabels; - - return 0; - - } - catch(exception& e) { - m->errorOut(e, "BiomInfoCommand", "eliminateZeroOTUS"); - exit(1); - } -} -//********************************************************************************************************************** int BiomInfoCommand::getDims(string line, int& shapeNumRows, int& shapeNumCols) { try { //get shape @@ -584,7 +629,7 @@ int BiomInfoCommand::getDims(string line, int& shapeNumRows, int& shapeNumCols) } } //********************************************************************************************************************** -vector< vector > BiomInfoCommand::readRows(string line, int& numRows, bool& allBlank) { +vector< vector > BiomInfoCommand::readRows(string line, int& numRows, bool& hasTaxonomy) { try { /*"rows":[ {"id":"Otu01", "metadata":{"taxonomy":["Bacteria", "Bacteroidetes", "Bacteroidia", "Bacteroidales", "Porphyromonadaceae", "unclassified"], "bootstrap":[100, 100, 100, 100, 100, 100]}}, @@ -607,7 +652,7 @@ vector< vector > BiomInfoCommand::readRows(string line, int& numRows, bo int closeParen = 0; string nextRow = ""; bool end = false; - allBlank = true; + bool allBlank = true; for (int i = 0; i < line.length(); i++) { @@ -633,6 +678,8 @@ vector< vector > BiomInfoCommand::readRows(string line, int& numRows, bo } } + if (allBlank) { hasTaxonomy = false; } + else { hasTaxonomy = true; } return results; } @@ -759,6 +806,8 @@ string BiomInfoCommand::getTaxonomy(string taxonomy, string bootstrap) { result += results[i] + ";"; } + if (results.size() > maxLevel) { maxLevel = results.size(); } + return result; } catch(exception& e) { @@ -798,7 +847,9 @@ string BiomInfoCommand::getTag(string& line) { void BiomInfoCommand::printSharedData(vector thislookup, ofstream& out) { try { + //sorts alphabetically m->clearGroups(); + vector Groups; map Ovectors; for (int i = 0; i < thislookup.size(); i++) { Ovectors[thislookup[i]->getGroup()] = thislookup[i]; } diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h index dafa9120..f000532d 100644 --- a/source/commands/biominfocommand.h +++ b/source/commands/biominfocommand.h @@ -11,6 +11,7 @@ #include "command.hpp" #include "inputdata.h" +#include "phylosummary.h" class BiomInfoCommand : public Command { @@ -36,20 +37,21 @@ class BiomInfoCommand : public Command { void help() { m->mothurOut(getHelpString()); } private: - int eliminateZeroOTUS(vector&); void printSharedData(vector, ofstream&); int createSharedFromBiom(); string getTag(string&); string getName(string); string getTaxonomy(string, string); + string addUnclassifieds(string tax); vector< vector > readRows(string, int&, bool&); int getDims(string, int&, int&); vector readData(string, string, string, vector&, int); vector getNamesAndTaxonomies(string); - vector Groups, outputNames; - string fileroot, outputDir, biomfile, label; - bool firsttime, pickedGroups, abort; + vector outputNames; + string fileroot, outputDir, biomfile, label, basis; + bool firsttime, abort, relabund; + int maxLevel; }; From ad9dc9e68408dc1d216ebd67ccbc04d5df1ecf33 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 17 Aug 2015 17:31:59 -0400 Subject: [PATCH 025/135] Adds taxsummary for basis=otu biom.info Issue #82 --- source/commands/biominfocommand.cpp | 56 +++++++++++++++++++++++++++---------- source/commands/biominfocommand.h | 2 +- 2 files changed, 42 insertions(+), 16 deletions(-) diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index c1c6ea1d..67c73230 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -162,13 +162,13 @@ int BiomInfoCommand::execute(){ if (abort == true) { if (calledHelp) { return 0; } return 2; } - createSharedFromBiom(); + int start = time(NULL); - if (m->control_pressed) { - for (int i = 0; i < outputNames.size(); i++) { - m->mothurRemove(outputNames[i]); - } - } + createFilesFromBiom(); + + m->mothurOutEndLine(); m->mothurOut("It took " + toString(time(NULL) - start) + " create mothur files from your biom file.\n"); m->mothurOutEndLine(); + + if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } } string current = ""; itTypes = outputTypes.find("shared"); @@ -176,6 +176,12 @@ int BiomInfoCommand::execute(){ if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setSharedFile(current); } } + //set taxonomy file as new current taxonomyfile + itTypes = outputTypes.find("taxonomy"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setTaxonomyFile(current); } + } + m->mothurOutEndLine(); m->mothurOut("Output File Names: "); m->mothurOutEndLine(); for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } @@ -189,7 +195,7 @@ int BiomInfoCommand::execute(){ } } //********************************************************************************************************************** -int BiomInfoCommand::createSharedFromBiom() { +int BiomInfoCommand::createFilesFromBiom() { try { //getting output filename string filename = biomfile; @@ -439,14 +445,33 @@ int BiomInfoCommand::createSharedFromBiom() { m->openOutputFile(taxFilename, outTax); outTax << "OTU\tSize\tTaxonomy\n"; - GroupMap* g = NULL; - PhyloSummary taxaSum(g, relabund); + CountTable* ct = NULL; + if (basis == "otu") { + ct = new CountTable(); + for (int j = 0; j < lookup.size(); j++) { ct->addGroup(lookup[j]->getGroup()); } + + int numBins = lookup[0]->getNumBins(); + for (int i = 0; i < numBins; i++) { + vector abunds; + for (int j = 0; j < lookup.size(); j++) { + if (m->control_pressed) { break; } + abunds.push_back(lookup[j]->getAbundance(i)); + } + ct->push_back(otuNames[i], abunds); + } + } + + PhyloSummary taxaSum(ct, relabund); for (int i = 0; i < lookup[0]->getNumBins(); i++) { if (m->control_pressed) { break; } int total = 0; - for (int j = 0; j < lookup.size(); j++) { total += lookup[j]->getAbundance(i); } + map containsGroup; + for (int j = 0; j < lookup.size(); j++) { + total += lookup[j]->getAbundance(i); + containsGroup[lookup[j]->getGroup()] = lookup[j]->getAbundance(i); + } string newTax = addUnclassifieds(conTaxonomy[i]); outTax << otuNames[i] << '\t' << total << '\t' << newTax << endl; @@ -454,7 +479,7 @@ int BiomInfoCommand::createSharedFromBiom() { if (basis == "sequence") { for (int k = 0; k < total; k++) { taxaSum.addSeqToTree(otuNames[i], newTax); } //one for each sequence in the otu }else { - taxaSum.addSeqToTree(otuNames[i], newTax); //add otu + taxaSum.addSeqToTree(newTax, containsGroup); //add otu } } outTax.close(); @@ -468,23 +493,24 @@ int BiomInfoCommand::createSharedFromBiom() { ofstream outTaxSum; m->openOutputFile(taxSumFilename, outTaxSum); + //write tax.summary if (relabund) { taxaSum.print(outTaxSum, relabund); } else { taxaSum.print(outTaxSum); } outTaxSum.close(); + if (ct != NULL) { delete ct; } + } } for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } } - if (m->control_pressed) { for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } - return 0; } catch(exception& e) { - m->errorOut(e, "BiomInfoCommand", "createSharedFromBiom"); + m->errorOut(e, "BiomInfoCommand", "createFilesFromBiom"); exit(1); } } @@ -528,7 +554,7 @@ vector BiomInfoCommand::readData(string matrixFormat, strin //creates new sharedRAbunds for (int i = 0; i < groupNames.size(); i++) { SharedRAbundVector* temp = new SharedRAbundVector(numOTUs); //sets all abunds to 0 - temp->setLabel("userLabel"); + temp->setLabel(label); temp->setGroup(groupNames[i]); lookup.push_back(temp); } diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h index f000532d..a638373b 100644 --- a/source/commands/biominfocommand.h +++ b/source/commands/biominfocommand.h @@ -38,7 +38,7 @@ class BiomInfoCommand : public Command { private: void printSharedData(vector, ofstream&); - int createSharedFromBiom(); + int createFilesFromBiom(); string getTag(string&); string getName(string); string getTaxonomy(string, string); From f90669fe0df0c03a4770872470ed520f8b855e0a Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 18 Aug 2015 15:21:20 -0400 Subject: [PATCH 026/135] Added testBiomCommand unit tests Issue #82 --- Mothur.xcodeproj/project.pbxproj | 6 +++ TestMothur/testbiominfocommand.cpp | 73 ++++++++++++++++++++++++++ TestMothur/testbiominfocommand.h | 29 ++++++++++ TestMothur/testcommands/testsetseedcommand.cpp | 2 +- source/commands/biominfocommand.cpp | 7 +-- source/mothurout.cpp | 14 +++++ source/mothurout.h | 1 + 7 files changed, 128 insertions(+), 4 deletions(-) create mode 100644 TestMothur/testbiominfocommand.cpp create mode 100644 TestMothur/testbiominfocommand.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 9060b54b..8797560d 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -371,6 +371,7 @@ 481FB6911AC1BAA60076CFF3 /* phylotree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B78F12D37EC400DA6239 /* phylotree.cpp */; }; 481FB6921AC1BAA60076CFF3 /* taxonomyequalizer.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */; }; 481FB6931AC1BAA60076CFF3 /* taxonomynode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A721AB73161C573B009860A1 /* taxonomynode.cpp */; }; + 4829D9671B8387D0002EEED4 /* testbiominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */; }; 483C952E188F0CAD0035E7B7 /* (null) in Sources */ = {isa = PBXBuildFile; }; 48705AC419BE32C50075E977 /* getmimarkspackagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */; }; 48705AC519BE32C50075E977 /* oligos.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705ABD19BE32C50075E977 /* oligos.cpp */; }; @@ -800,6 +801,8 @@ 481FB5281AC19F8B0076CFF3 /* setseedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = setseedcommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/setseedcommand.cpp; sourceTree = ""; }; 481FB5291AC19F8B0076CFF3 /* setseedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = setseedcommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/setseedcommand.h; sourceTree = ""; }; 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsetseedcommand.cpp; path = testcommands/testsetseedcommand.cpp; sourceTree = ""; }; + 4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = testbiominfocommand.cpp; sourceTree = ""; }; + 4829D9661B8387D0002EEED4 /* testbiominfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = testbiominfocommand.h; sourceTree = ""; }; 48705ABA19BE32C50075E977 /* abstractrandomforest.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = abstractrandomforest.hpp; path = source/randomforest/abstractrandomforest.hpp; sourceTree = ""; }; 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getmimarkspackagecommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getmimarkspackagecommand.cpp; sourceTree = ""; }; 48705ABC19BE32C50075E977 /* getmimarkspackagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getmimarkspackagecommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getmimarkspackagecommand.h; sourceTree = ""; }; @@ -1723,6 +1726,8 @@ isa = PBXGroup; children = ( 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */, + 4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */, + 4829D9661B8387D0002EEED4 /* testbiominfocommand.h */, 48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */, 48C728691B69598400D40830 /* testmergegroupscommand.h */, 48C728681B69598400D40830 /* testmergegroupscommand.cpp */, @@ -2715,6 +2720,7 @@ 481FB68C1AC1BA9E0076CFF3 /* bayesian.cpp in Sources */, 481FB5F41AC1B77E0076CFF3 /* preclustercommand.cpp in Sources */, 481FB5911AC1B71B0076CFF3 /* amovacommand.cpp in Sources */, + 4829D9671B8387D0002EEED4 /* testbiominfocommand.cpp in Sources */, 481FB58A1AC1B6FF0076CFF3 /* myPerseus.cpp in Sources */, 481FB63E1AC1B7EA0076CFF3 /* sabundvector.cpp in Sources */, 481FB57D1AC1B6EA0076CFF3 /* structpearson.cpp in Sources */, diff --git a/TestMothur/testbiominfocommand.cpp b/TestMothur/testbiominfocommand.cpp new file mode 100644 index 00000000..a0a62e0c --- /dev/null +++ b/TestMothur/testbiominfocommand.cpp @@ -0,0 +1,73 @@ +// +// testbiominfocommand.cpp +// Mothur +// +// Created by Sarah Westcott on 8/18/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "testbiominfocommand.h" +#include "catch.hpp" + + +TEST_CASE("Testing Biom.Info Command") { + TestBiomInfoCommand tBiom; + string input = ""; + + SECTION("Test getName function") { + INFO("Using id:B") // Only appears on a FAIL + string input = "id:B"; + CAPTURE(tBiom.getName(input)); // Displays this variable on a FAIL + + CHECK(tBiom.getName(input) == "B"); + } + + SECTION("Test getTaxonomy function") { + INFO("Using taxonomy:k__Bacteria,p__Firmicutes,c__Bacilli,o__Turicibacterales,f__Turicibacteraceae,g__Turicibacter,s__ bootstrap:100,100,100,100,100,100,100") // Only appears on a FAIL + string tax = "taxonomy:k__Bacteria,p__Firmicutes,c__Bacilli,o__Turicibacterales,f__Turicibacteraceae,g__Turicibacter,s__"; + string boot = "bootstrap:100,100,100,100,100,100,100"; + CAPTURE(tBiom.getTaxonomy(tax, boot)); // Displays this variable on a FAIL + + CHECK(tBiom.getTaxonomy(tax, boot) == "k__Bacteria(100);p__Firmicutes(100);c__Bacilli(100);o__Turicibacterales(100);f__Turicibacteraceae(100);g__Turicibacter(100);s__(100);"); + } + + SECTION("Test readRows") { + INFO("Using columns:[{id:A, metadata:null},{id:B, metadata:null},{id:C, metadata:null}]") // Only appears on a FAIL + string input = "columns:[{id:A, metadata:null},{id:B, metadata:null},{id:C, metadata:null}]"; + int numRows = 0; + bool hasTaxonomy = true; + //CAPTURE(tBiom.readRows(input, numRows, hasTaxonomy)); // Displays this variable on a FAIL + + CHECK(tBiom.readRows(input, numRows, hasTaxonomy)[0][0] == "A"); + CHECK(numRows == 3); + CHECK(hasTaxonomy == false); + } + + SECTION("Test getDims") { + INFO("Using line, shape: [28,3]") + string input = "shape: [28,3]"; + int numRows = 0; + int numCols = 0; + CAPTURE(tBiom.getDims(input, numRows, numCols)); // Displays this variable on a FAIL + + CHECK(tBiom.getDims(input, numRows, numCols) == 0); + CHECK(numRows == 28); + CHECK(numCols == 3); + } + + SECTION("Test readData") { + INFO("Using line, data: [[0,2,5], [1,2,5], [2,1,2], [3,1,1], [4,1,1], [5,0,18], [5,1,12], [6,0,15], [6,1,4], [7,0,1], [7,1,1], [8,1,1], [9,0,2], [9,1,6], [9,2,4], [10,1,2], [11,0,5], [11,1,1], [11,2,4], [12,0,1], [13,0,1], [13,1,2], [14,1,2], [15,1,5], [16,0,8], [16,1,1], [17,1,2], [18,0,13], [19,0,2], [19,1,1], [20,0,15], [20,1,27], [20,2,11], [21,1,10], [22,2,18], [23,2,5], [24,0,1], [24,2,20], [25,1,2], [25,2,2], [26,0,1], [26,1,1], [27,0,1]]") + string input = "data: [[0,2,5], [1,2,5], [2,1,2], [3,1,1], [4,1,1], [5,0,18], [5,1,12], [6,0,15], [6,1,4], [7,0,1], [7,1,1], [8,1,1], [9,0,2], [9,1,6], [9,2,4], [10,1,2], [11,0,5], [11,1,1], [11,2,4], [12,0,1], [13,0,1], [13,1,2], [14,1,2], [15,1,5], [16,0,8], [16,1,1], [17,1,2], [18,0,13], [19,0,2], [19,1,1], [20,0,15], [20,1,27], [20,2,11], [21,1,10], [22,2,18], [23,2,5], [24,0,1], [24,2,20], [25,1,2], [25,2,2], [26,0,1], [26,1,1], [27,0,1]]"""; + string matrixFormat = "sparse"; + string matrixElementType = "int"; + vector groupNames; groupNames.push_back("A"); groupNames.push_back("B"); groupNames.push_back("C"); + int numOtus = 28; + //CAPTURE(tBiom.readData(matrixFormat, input, matrixElementType, groupNames, numOtus)); // Displays this variable on a FAIL + int abund = tBiom.readData(matrixFormat, input, matrixElementType, groupNames, numOtus)[0]->getAbundance(9); + CHECK(abund == 2); + } + + + //more tests need to be added - just a start to set up testing project and model +} + diff --git a/TestMothur/testbiominfocommand.h b/TestMothur/testbiominfocommand.h new file mode 100644 index 00000000..7296a988 --- /dev/null +++ b/TestMothur/testbiominfocommand.h @@ -0,0 +1,29 @@ +// +// testbiominfocommand.h +// Mothur +// +// Created by Sarah Westcott on 8/18/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testbiominfocommand__ +#define __Mothur__testbiominfocommand__ + +#include "biominfocommand.h" + +class TestBiomInfoCommand : public BiomInfoCommand { + +public: + + using BiomInfoCommand::getTag; + using BiomInfoCommand::getName; + using BiomInfoCommand::getTaxonomy; + using BiomInfoCommand::readRows; + using BiomInfoCommand::getDims; + using BiomInfoCommand::readData; + using BiomInfoCommand::getNamesAndTaxonomies; + +}; + + +#endif /* defined(__Mothur__testbiominfocommand__) */ diff --git a/TestMothur/testcommands/testsetseedcommand.cpp b/TestMothur/testcommands/testsetseedcommand.cpp index 08716b22..13c68c1f 100644 --- a/TestMothur/testcommands/testsetseedcommand.cpp +++ b/TestMothur/testcommands/testsetseedcommand.cpp @@ -21,7 +21,7 @@ TEST_CASE("Testing set.seed command") { int randValue = rand()%100 + 1; - CHECK(randValue == 25); + CHECK(randValue == 16); } delete setseed; diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index 67c73230..d71c615a 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -749,6 +749,7 @@ vector BiomInfoCommand::getNamesAndTaxonomies(string line) { int pos2 = line.find("bootstrap"); if (pos2 != string::npos) { //no taxonomy info given taxonomy = line.substr(pos, (pos2-pos)); + taxonomy = taxonomy.substr(0, taxonomy.find_last_of(',')); bootstrap = line.substr(pos2); }else { taxonomy = line.substr(pos); @@ -807,7 +808,7 @@ string BiomInfoCommand::getTaxonomy(string taxonomy, string bootstrap) { m->splitAtComma(taxon, taxons); results.push_back(taxon); } - if (taxons != "") { results.push_back(taxons); } + if (!m->stringBlank(taxons)) { results.push_back(taxons); } } if (bootstrap != "") { @@ -823,7 +824,7 @@ string BiomInfoCommand::getTaxonomy(string taxonomy, string bootstrap) { results[i]+="("+bootValue+")"; i++; } - if (bootValues != "") { results[i]+="("+bootValues+")"; } + if (!m->stringBlank(bootValues)) { results[i]+="("+bootValues+")"; } } string result = ""; @@ -833,7 +834,7 @@ string BiomInfoCommand::getTaxonomy(string taxonomy, string bootstrap) { } if (results.size() > maxLevel) { maxLevel = results.size(); } - + return result; } catch(exception& e) { diff --git a/source/mothurout.cpp b/source/mothurout.cpp index ddbff9d5..b5ef8d62 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -1070,6 +1070,20 @@ bool MothurOut::isBlank(string fileName){ } } /***********************************************************************/ +bool MothurOut::stringBlank(string input){ + try { + for (int i = 0; i < input.length(); i++) { + if (!isspace(input[i])) { return false; } + } + + return true; + } + catch(exception& e) { + errorOut(e, "MothurOut", "isBlank"); + exit(1); + } +} +/***********************************************************************/ string MothurOut::getFullPathName(string fileName){ try{ diff --git a/source/mothurout.h b/source/mothurout.h index 0af2ffb4..dc30b0a1 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -118,6 +118,7 @@ class MothurOut { bool checkLocations(string&, string); //filename, inputDir. checks for file in ./, inputdir, default and mothur's exe location. Returns false if cant be found. If found completes name with location string getline(ifstream&); string getline(istringstream&); + bool stringBlank (string); void gobble(istream&); void gobble(istringstream&); void zapGremlins(istream&); From 1e5f8e2927fca338e659621ac24cd9166705c3a2 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 19 Aug 2015 12:16:49 -0400 Subject: [PATCH 027/135] Removes MPI source code Issue #144 The MPI version is slower and requires dual maintenance. No advantage to keeping it. --- Mothur.xcodeproj/project.pbxproj | 2 +- makefile | 6 - source/chimera/bellerophon.cpp | 192 +-- source/chimera/bellerophon.h | 4 - source/chimera/ccode.cpp | 176 +-- source/chimera/ccode.h | 11 +- source/chimera/chimera.cpp | 163 +-- source/chimera/chimera.h | 9 +- source/chimera/chimeracheckrdp.cpp | 161 --- source/chimera/chimeracheckrdp.h | 4 - source/chimera/chimeraslayer.cpp | 280 +---- source/chimera/chimeraslayer.h | 5 - source/chimera/pintail.cpp | 202 +--- source/chimera/pintail.h | 6 +- source/classifier/bayesian.cpp | 306 +---- source/classifier/classify.cpp | 128 +- source/classifier/phylosummary.h | 1 - source/classifier/phylotree.cpp | 230 +--- source/commandfactory.cpp | 54 +- source/commandfactory.hpp | 1 - source/commands/aligncommand.cpp | 299 ----- source/commands/aligncommand.h | 7 +- source/commands/chimerabellerophoncommand.cpp | 31 +- source/commands/chimeraccodecommand.cpp | 150 --- source/commands/chimeraccodecommand.h | 4 - source/commands/chimeracheckcommand.cpp | 135 +-- source/commands/chimeracheckcommand.h | 4 - source/commands/chimerapintailcommand.cpp | 136 --- source/commands/chimerapintailcommand.h | 4 - source/commands/chimeraslayercommand.cpp | 441 +------ source/commands/chimeraslayercommand.h | 9 +- source/commands/chimerauchimecommand.cpp | 3 - source/commands/classifyseqscommand.cpp | 338 +----- source/commands/classifyseqscommand.h | 5 - source/commands/clustersplitcommand.cpp | 275 +---- source/commands/distancecommand.cpp | 600 +--------- source/commands/distancecommand.h | 17 +- source/commands/filterseqscommand.cpp | 361 +----- source/commands/filterseqscommand.h | 4 - source/commands/pairwiseseqscommand.cpp | 450 +------ source/commands/pairwiseseqscommand.h | 6 - source/commands/pipelinepdscommand.cpp | 23 +- source/commands/screenseqscommand.cpp | 472 +------- source/commands/screenseqscommand.h | 8 +- source/commands/shhhercommand.cpp | 1600 +------------------------ source/commands/shhhercommand.h | 1264 +------------------ source/datastructures/alignmentdb.cpp | 85 +- source/datastructures/distancedb.hpp | 5 - source/engine.cpp | 147 +-- source/mothur.cpp | 25 +- source/mothur.h | 3 - source/mothurout.cpp | 186 +-- source/read/splitmatrix.cpp | 110 +- source/read/splitmatrix.h | 3 - source/validparameter.cpp | 38 +- 55 files changed, 377 insertions(+), 8812 deletions(-) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 8797560d..32a65b66 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -1725,10 +1725,10 @@ 481FB5211AC0A9B40076CFF3 /* testcommands */ = { isa = PBXGroup; children = ( - 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */, 4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */, 4829D9661B8387D0002EEED4 /* testbiominfocommand.h */, 48C728741B6AB4CD00D40830 /* testgetgroupscommand.h */, + 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */, 48C728691B69598400D40830 /* testmergegroupscommand.h */, 48C728681B69598400D40830 /* testmergegroupscommand.cpp */, 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */, diff --git a/makefile b/makefile index f0d02191..c05e2621 100644 --- a/makefile +++ b/makefile @@ -8,7 +8,6 @@ # Macros # -USEMPI ?= no 64BIT_VERSION ?= yes USEREADLINE ?= yes USECOMPRESSION ?= no @@ -57,11 +56,6 @@ ifeq ($(strip $(USEREADLINE)),yes) endif -ifeq ($(strip $(USEMPI)),yes) - CXX = mpic++ - CXXFLAGS += -DUSE_MPI -endif - #The boost libraries allow you to read gz files. ifeq ($(strip $(USEBOOST)),yes) BOOST_INCLUDE_DIR="/usr/local/include" diff --git a/source/chimera/bellerophon.cpp b/source/chimera/bellerophon.cpp index 35b263ab..290b9735 100644 --- a/source/chimera/bellerophon.cpp +++ b/source/chimera/bellerophon.cpp @@ -128,102 +128,6 @@ int Bellerophon::print(ostream& out, ostream& outAcc, string s) { exit(1); } } -#ifdef USE_MPI -//*************************************************************************************************************** -int Bellerophon::print(MPI_File& out, MPI_File& outAcc, string s) { - try { - - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - string outString = ""; - - //sorted "best" preference scores for all seqs - vector best = getBestPref(); - - int above1 = 0; - int ninetyfive = best.size() * 0.05; - float cutoffScore = best[ninetyfive].score; - - if (m->control_pressed) { return numSeqs; } - - outString = "Name\tScore\tLeft\tRight\n"; - MPI_Status status; - int olength = outString.length(); - char* buf5 = new char[olength]; - memcpy(buf5, outString.c_str(), olength); - - MPI_File_write_shared(out, buf5, olength, MPI_CHAR, &status); - - delete buf5; - - //output prefenence structure to .chimeras file - for (int i = 0; i < best.size(); i++) { - - if (m->control_pressed) { return numSeqs; } - - outString = best[i].name + "\t" + toString(best[i].score) + "\t" + best[i].leftParent + "\t" + best[i].rightParent + "\n"; - - MPI_Status status; - int length = outString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outString.c_str(), length); - - MPI_File_write_shared(out, buf2, length, MPI_CHAR, &status); - - delete buf2; - - //calc # of seqs with preference above 95%tile - if (best[i].score >= cutoffScore) { - above1++; - string outAccString = ""; - outAccString += best[i].name + "\n"; - - MPI_Status statusAcc; - length = outAccString.length(); - char* buf = new char[length]; - memcpy(buf, outAccString.c_str(), length); - - MPI_File_write_shared(outAcc, buf, length, MPI_CHAR, &statusAcc); - - delete buf; - - cout << best[i].name << " is a suspected chimera at breakpoint " << toString(best[i].midpoint) << endl; - cout << "It's score is " << toString(best[i].score) << " with suspected left parent " << best[i].leftParent << " and right parent " << best[i].rightParent << endl; - } - } - - //output results to screen - m->mothurOutEndLine(); - m->mothurOut("Sequence with preference score above " + toString(cutoffScore) + ": " + toString(above1)); m->mothurOutEndLine(); - int spot; - spot = best.size()-1; - m->mothurOut("Minimum:\t" + toString(best[spot].score)); m->mothurOutEndLine(); - spot = best.size() * 0.975; - m->mothurOut("2.5%-tile:\t" + toString(best[spot].score)); m->mothurOutEndLine(); - spot = best.size() * 0.75; - m->mothurOut("25%-tile:\t" + toString(best[spot].score)); m->mothurOutEndLine(); - spot = best.size() * 0.50; - m->mothurOut("Median: \t" + toString(best[spot].score)); m->mothurOutEndLine(); - spot = best.size() * 0.25; - m->mothurOut("75%-tile:\t" + toString(best[spot].score)); m->mothurOutEndLine(); - spot = best.size() * 0.025; - m->mothurOut("97.5%-tile:\t" + toString(best[spot].score)); m->mothurOutEndLine(); - spot = 0; - m->mothurOut("Maximum:\t" + toString(best[spot].score)); m->mothurOutEndLine(); - - } - - return numSeqs; - - } - catch(exception& e) { - m->errorOut(e, "Bellerophon", "print"); - exit(1); - } -} -#endif //******************************************************************************************************************** //sorts highest score to lowest inline bool comparePref(Preference left, Preference right){ @@ -237,82 +141,7 @@ int Bellerophon::getChimeras() { vector midpoints; midpoints.resize(iters, window); for (int i = 1; i < iters; i++) { midpoints[i] = midpoints[i-1] + increment; } - #ifdef USE_MPI - int pid, numSeqsPerProcessor; - - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - numSeqsPerProcessor = iters / processors; - - //each process hits this only once - unsigned long long startPos = pid * numSeqsPerProcessor; - if(pid == processors - 1){ - numSeqsPerProcessor = iters - pid * numSeqsPerProcessor; - } - lines.push_back(linePair(startPos, numSeqsPerProcessor)); - //fill pref with scores - driverChimeras(midpoints, lines[0]); - - if (m->control_pressed) { return 0; } - - //each process must send its parts back to pid 0 - if (pid == 0) { - - //receive results - for (int j = 1; j < processors; j++) { - - vector MPIBestSend; - for (int i = 0; i < numSeqs; i++) { - - if (m->control_pressed) { return 0; } - - MPI_Status status; - //receive string - int length; - MPI_Recv(&length, 1, MPI_INT, j, 2001, MPI_COMM_WORLD, &status); - - char* buf = new char[length]; - MPI_Recv(&buf[0], length, MPI_CHAR, j, 2001, MPI_COMM_WORLD, &status); - - string temp = buf; - if (temp.length() > length) { temp = temp.substr(0, length); } - delete buf; - - MPIBestSend.push_back(temp); - } - - fillPref(j, MPIBestSend); - - if (m->control_pressed) { return 0; } - } - - }else { - //takes best window for each sequence and turns Preference to string that can be parsed by pid 0. - //played with this a bit, but it may be better to try user-defined datatypes with set string lengths?? - vector MPIBestSend = getBestWindow(lines[0]); - pref.clear(); - - //send your result to parent - for (int i = 0; i < numSeqs; i++) { - - if (m->control_pressed) { return 0; } - - int bestLength = MPIBestSend[i].length(); - char* buf = new char[bestLength]; - memcpy(buf, MPIBestSend[i].c_str(), bestLength); - - MPI_Send(&bestLength, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD); - MPI_Send(buf, bestLength, MPI_CHAR, 0, 2001, MPI_COMM_WORLD); - delete buf; - } - - MPIBestSend.clear(); - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #else - //divide breakpoints between processors #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) if(processors == 1){ @@ -342,8 +171,7 @@ int Bellerophon::getChimeras() { driverChimeras(midpoints, lines[0]); #endif - #endif - + return 0; } @@ -597,8 +425,6 @@ int Bellerophon::generatePreferences(vector left, vector right, itL = currentLeft.find(j); itR = currentRight.find(j); -//cout << " i = " << i << " j = " << j << " distLeft = " << itL->second << endl; -//cout << " i = " << i << " j = " << j << " distright = " << itR->second << endl; //if you can find this entry update the preferences if ((itL != currentLeft.end()) && (itR != currentRight.end())) { @@ -606,31 +432,19 @@ int Bellerophon::generatePreferences(vector left, vector right, if (!correction) { pref[count][i].score += abs((itL->second - itR->second)); pref[count][j].score += abs((itL->second - itR->second)); -//cout << "left " << i << " " << j << " = " << itL->second << " right " << i << " " << j << " = " << itR->second << endl; -//cout << "abs = " << abs((itL->second - itR->second)) << endl; -//cout << i << " score = " << pref[i].score[1] << endl; -//cout << j << " score = " << pref[j].score[1] << endl; }else { pref[count][i].score += abs((sqrt(itL->second) - sqrt(itR->second))); pref[count][j].score += abs((sqrt(itL->second) - sqrt(itR->second))); -//cout << "left " << i << " " << j << " = " << itL->second << " right " << i << " " << j << " = " << itR->second << endl; -//cout << "abs = " << abs((sqrt(itL->second) - sqrt(itR->second))) << endl; -//cout << i << " score = " << pref[i].score[1] << endl; -//cout << j << " score = " << pref[j].score[1] << endl; - } -//cout << "pref[" << i << "].closestLeft[1] = " << pref[i].closestLeft[1] << " parent = " << pref[i].leftParent[1] << endl; + } //are you the closest left sequence if (itL->second < pref[count][i].closestLeft) { pref[count][i].closestLeft = itL->second; pref[count][i].leftParent = seqs[j]->getName(); -//cout << "updating closest left to " << pref[i].leftParent[1] << endl; } -//cout << "pref[" << j << "].closestLeft[1] = " << pref[j].closestLeft[1] << " parent = " << pref[j].leftParent[1] << endl; - if (itL->second < pref[count][j].closestLeft) { + if (itL->second < pref[count][j].closestLeft) { pref[count][j].closestLeft = itL->second; pref[count][j].leftParent = seqs[i]->getName(); -//cout << "updating closest left to " << pref[j].leftParent[1] << endl; } //are you the closest right sequence diff --git a/source/chimera/bellerophon.h b/source/chimera/bellerophon.h index 36555bf0..74646211 100644 --- a/source/chimera/bellerophon.h +++ b/source/chimera/bellerophon.h @@ -30,10 +30,6 @@ class Bellerophon : public Chimera { int getChimeras(); int print(ostream&, ostream&, string); - #ifdef USE_MPI - int print(MPI_File&, MPI_File&, string); - #endif - private: struct linePair { unsigned long long start; diff --git a/source/chimera/ccode.cpp b/source/chimera/ccode.cpp index 00cd3f19..619717c3 100644 --- a/source/chimera/ccode.cpp +++ b/source/chimera/ccode.cpp @@ -27,43 +27,13 @@ Ccode::Ccode(string filename, string temp, bool f, string mask, int win, int num decalc = new DeCalculator(); mapInfo = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "mapinfo"; + + ofstream out2; + m->openOutputFile(mapInfo, out2); + + out2 << "Place in masked, filtered and trimmed sequence\tPlace in original alignment" << endl; + out2.close(); - #ifdef USE_MPI - - //char* inFileName = new char[mapInfo.length()]; - //memcpy(inFileName, mapInfo.c_str(), mapInfo.length()); - - char inFileName[1024]; - strcpy(inFileName, mapInfo.c_str()); - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - MPI_File_open(MPI_COMM_WORLD, inFileName, outMode, MPI_INFO_NULL, &outMap); //comm, filename, mode, info, filepointer - - //delete inFileName; - - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - string outString = "Place in masked, filtered and trimmed sequence\tPlace in original alignment\n"; - - MPI_Status status; - int length = outString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outString.c_str(), length); - - MPI_File_write_shared(outMap, buf2, length, MPI_CHAR, &status); - delete buf2; - } - #else - - ofstream out2; - m->openOutputFile(mapInfo, out2); - - out2 << "Place in masked, filtered and trimmed sequence\tPlace in original alignment" << endl; - out2.close(); - #endif } catch(exception& e) { m->errorOut(e, "Ccode", "Ccode"); @@ -74,11 +44,7 @@ Ccode::Ccode(string filename, string temp, bool f, string mask, int win, int num Ccode::~Ccode() { delete distCalc; delete decalc; - - #ifdef USE_MPI - MPI_File_close(&outMap); - #endif -} +} //*************************************************************************************************************** Sequence Ccode::print(ostream& out, ostream& outAcc) { try { @@ -168,134 +134,6 @@ Sequence Ccode::print(ostream& out, ostream& outAcc) { exit(1); } } -#ifdef USE_MPI -//*************************************************************************************************************** -Sequence Ccode::print(MPI_File& out, MPI_File& outAcc) { - try { - - string outMapString = ""; - - outMapString += querySeq->getName() + "\n"; - for (it = spotMap.begin(); it!= spotMap.end(); it++) { - outMapString += toString(it->first) + "\t" + toString(it->second) + "\n"; - } - printMapping(outMapString); - outMapString = ""; - - string outString = ""; - string outAccString = ""; - - outString += querySeq->getName() + "\n\nReference sequences used and distance to query:\n"; - - for (int j = 0; j < closest.size(); j++) { - outString += closest[j].seq->getName() + "\t" + toString(closest[j].dist) + "\n"; - } - outString += "\n\nMapping information: "; - - //for each window - //window mapping info. - //you mask and did not filter - if ((seqMask != "") && (!filter)) { outString += "mask and trim."; } - - //you filtered and did not mask - if ((seqMask == "") && (filter)) { outString += "filter and trim."; } - - //you masked and filtered - if ((seqMask != "") && (filter)) { outString += "mask, filter and trim."; } - - outString += "\nWindow\tStartPos\tEndPos\n"; - it = trim.begin(); - for (int k = 0; k < windows.size()-1; k++) { - outString += toString(k+1) + "\t" + toString(spotMap[windows[k]-it->first]) + "\t" + toString(spotMap[windows[k]-it->first+windowSizes]) + "\n"; - } - - outString += toString(windows.size()) + "\t" + toString(spotMap[windows[windows.size()-1]-it->first]) + "\t" + toString(spotMap[it->second-it->first-1]) + "\n\n"; - - outString += "Window\tAvgQ\t(sdQ)\tAvgR\t(sdR)\tRatio\tAnova\n"; - for (int k = 0; k < windows.size(); k++) { - float ds = averageQuery[k] / averageRef[k]; - outString += toString(k+1) + "\t" + toString(averageQuery[k]) + "\t" + toString(sdQuery[k]) + "\t" + toString(averageRef[k]) + "\t" + toString(sdRef[k]) + "\t" + toString(ds) + "\t" + toString(anova[k]) + "\n"; - } - - //varRef - //varQuery - /* F test for differences among variances. - * varQuery is expected to be higher or similar than varRef */ - //float fs = varQuery[query] / varRef[query]; /* F-Snedecor, test for differences of variances */ - - bool results = false; - - //confidence limit, t - Student, anova - outString += "\nWindow\tConfidenceLimit\tt-Student\tAnova\n"; - - for (int k = 0; k < windows.size(); k++) { - string temp = ""; - if (isChimericConfidence[k]) { temp += "*\t"; } - else { temp += "\t"; } - - if (isChimericTStudent[k]) { temp += "*\t"; } - else { temp += "\t"; } - - if (isChimericANOVA[k]) { temp += "*\t"; } - else { temp += "\t"; } - - outString += toString(k+1) + "\t" + temp + "\n"; - - if (temp == "*\t*\t*\t") { results = true; } - } - outString += "\n"; - - MPI_Status status; - int length = outString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outString.c_str(), length); - - MPI_File_write_shared(out, buf2, length, MPI_CHAR, &status); - delete buf2; - - if (results) { - m->mothurOut(querySeq->getName() + " was found have at least one chimeric window."); m->mothurOutEndLine(); - outAccString += querySeq->getName() + "\n"; - - MPI_Status statusAcc; - length = outAccString.length(); - char* buf = new char[length]; - memcpy(buf, outAccString.c_str(), length); - - MPI_File_write_shared(outAcc, buf, length, MPI_CHAR, &statusAcc); - delete buf; - } - - //free memory - for (int i = 0; i < closest.size(); i++) { delete closest[i].seq; } - - return *querySeq; - } - catch(exception& e) { - m->errorOut(e, "Ccode", "print"); - exit(1); - } -} -//*************************************************************************************************************** -int Ccode::printMapping(string& output) { - try { - MPI_Status status; - int length = output.length(); - char* buf = new char[length]; - memcpy(buf, output.c_str(), length); - - MPI_File_write_shared(outMap, buf, length, MPI_CHAR, &status); - delete buf; - - return 0; - - } - catch(exception& e) { - m->errorOut(e, "Ccode", "printMapping"); - exit(1); - } -} -#endif //*************************************************************************************************************** int Ccode::getChimeras(Sequence* query) { try { diff --git a/source/chimera/ccode.h b/source/chimera/ccode.h index dcd48797..9e8faa01 100644 --- a/source/chimera/ccode.h +++ b/source/chimera/ccode.h @@ -29,10 +29,7 @@ class Ccode : public Chimera { int getChimeras(Sequence* query); Sequence print(ostream&, ostream&); - - #ifdef USE_MPI - Sequence print(MPI_File&, MPI_File&); - #endif + private: Dist* distCalc; @@ -78,12 +75,6 @@ class Ccode : public Chimera { int getDiff(string, string); //return number of mismatched bases, a gap to base is not counted as a mismatch float getT(int); float getF(int); - - #ifdef USE_MPI - int printMapping(string&); - MPI_File outMap; - #endif - }; /***********************************************************/ diff --git a/source/chimera/chimera.cpp b/source/chimera/chimera.cpp index 53e77322..7563aa66 100644 --- a/source/chimera/chimera.cpp +++ b/source/chimera/chimera.cpp @@ -122,111 +122,7 @@ vector Chimera::readSeqs(string file) { m->mothurOut("Reading sequences from " + file + "..."); cout.flush(); - #ifdef USE_MPI - int pid, processors; - vector positions; - int numSeqs; - int tag = 2001; - MPI_File inMPI; - MPI_Status status; - if (byGroup) { - char inFileName[1024]; - strcpy(inFileName, file.c_str()); - - MPI_File_open(MPI_COMM_SELF, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - - positions = m->setFilePosFasta(file, numSeqs); //fills MPIPos, returns numSeqs - - //read file - for(int i=0;icontrol_pressed) { MPI_File_close(&inMPI); return container; } - - //read next sequence - int seqlength = positions[i+1] - positions[i]; - char* buf4 = new char[seqlength]; - - MPI_File_read_at(inMPI, positions[i], buf4, seqlength, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > seqlength) { tempBuf = tempBuf.substr(0, seqlength); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - - Sequence* current = new Sequence(iss); - if (current->getName() != "") { - if (count == 0) { length = current->getAligned().length(); count++; } //gets first seqs length - else if (length != current->getAligned().length()) { unaligned = true; } - - container.push_back(current); - if (rdb->save) { rdb->referenceSeqs.push_back(*current); } - } - } - - MPI_File_close(&inMPI); - - }else { - - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - //char* inFileName = new char[file.length()]; - //memcpy(inFileName, file.c_str(), file.length()); - - char inFileName[1024]; - strcpy(inFileName, file.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - //delete inFileName; - - if (pid == 0) { - positions = m->setFilePosFasta(file, numSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&positions[0], (numSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - }else{ - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - positions.resize(numSeqs+1); - MPI_Recv(&positions[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - } - - //read file - for(int i=0;icontrol_pressed) { MPI_File_close(&inMPI); return container; } - - //read next sequence - int seqlength = positions[i+1] - positions[i]; - char* buf4 = new char[seqlength]; - - MPI_File_read_at(inMPI, positions[i], buf4, seqlength, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > seqlength) { tempBuf = tempBuf.substr(0, seqlength); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - - Sequence* current = new Sequence(iss); - if (current->getName() != "") { - if (count == 0) { length = current->getAligned().length(); count++; } //gets first seqs length - else if (length != current->getAligned().length()) { unaligned = true; } - - container.push_back(current); - if (rdb->save) { rdb->referenceSeqs.push_back(*current); } - } - } - - MPI_File_close(&inMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - } - #else - ifstream in; m->openInputFile(file, in); @@ -246,7 +142,6 @@ vector Chimera::readSeqs(string file) { } } in.close(); - #endif m->mothurOut("Done."); m->mothurOutEndLine(); @@ -271,54 +166,18 @@ void Chimera::setMask(string filename) { seqMask = ""; }else{ - #ifdef USE_MPI - MPI_File inMPI; - MPI_Offset size; - MPI_Status status; - - //char* inFileName = new char[filename.length()]; - //memcpy(inFileName, filename.c_str(), filename.length()); - - char inFileName[1024]; - strcpy(inFileName, filename.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_get_size(inMPI, &size); - - //delete inFileName; - - char* buffer = new char[size]; - MPI_File_read(inMPI, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - - delete buffer; - - if (!iss.eof()) { - Sequence temp(iss); - seqMask = temp.getAligned(); - }else { - m->mothurOut("Problem with mask."); m->mothurOutEndLine(); - seqMask = ""; - } - - MPI_File_close(&inMPI); - #else + ifstream infile; + m->openInputFile(filename, infile); + + if (!infile.eof()) { + Sequence temp(infile); + seqMask = temp.getAligned(); + }else { + m->mothurOut("Problem with mask."); m->mothurOutEndLine(); + seqMask = ""; + } + infile.close(); - ifstream infile; - m->openInputFile(filename, infile); - - if (!infile.eof()) { - Sequence temp(infile); - seqMask = temp.getAligned(); - }else { - m->mothurOut("Problem with mask."); m->mothurOutEndLine(); - seqMask = ""; - } - infile.close(); - #endif } } diff --git a/source/chimera/chimera.h b/source/chimera/chimera.h index f65da1b1..3656b43d 100644 --- a/source/chimera/chimera.h +++ b/source/chimera/chimera.h @@ -153,14 +153,7 @@ class Chimera { virtual int print(ostream&, ostream&, string){ return 0; } virtual int getNumNoParents(){ return 0; } virtual data_results getResults() { data_results results; return results; } - - #ifdef USE_MPI - virtual Sequence print(MPI_File&, MPI_File&){ Sequence temp; return temp; } - virtual Sequence print(MPI_File&, MPI_File&, data_results, data_results, bool&){ Sequence temp; return temp; } - virtual int print(MPI_File&, MPI_File&, string){ return 0; } - #endif - - + protected: vector templateSeqs; diff --git a/source/chimera/chimeracheckrdp.cpp b/source/chimera/chimeracheckrdp.cpp index f3068383..e7fe02d1 100644 --- a/source/chimera/chimeracheckrdp.cpp +++ b/source/chimera/chimeracheckrdp.cpp @@ -79,50 +79,6 @@ Sequence ChimeraCheckRDP::print(ostream& out, ostream& outAcc) { exit(1); } } -#ifdef USE_MPI -//*************************************************************************************************************** -Sequence ChimeraCheckRDP::print(MPI_File& out, MPI_File& outAcc) { - try { - - cout << "Processing: " << querySeq->getName() << endl; - - string outString = ""; - - outString += querySeq->getName() + "\nIS scores: \t"; - - for (int k = 0; k < IS.size(); k++) { - outString += toString(IS[k].score) + "\t"; - } - outString += "\n"; - - MPI_Status status; - int length = outString.length(); - char* buf = new char[length]; - memcpy(buf, outString.c_str(), length); - - MPI_File_write_shared(out, buf, length, MPI_CHAR, &status); - delete buf; - - if (svg) { - if (name != "") { //if user has specific names - map::iterator it = names.find(querySeq->getName()); - - if (it != names.end()) { //user wants pic of this - makeSVGpic(IS); //zeros out negative results - } - }else{//output them all - makeSVGpic(IS); //zeros out negative results - } - } - - return *querySeq; - } - catch(exception& e) { - m->errorOut(e, "ChimeraCheckRDP", "print"); - exit(1); - } -} -#endif //*************************************************************************************************************** int ChimeraCheckRDP::getChimeras(Sequence* query) { try { @@ -257,40 +213,6 @@ void ChimeraCheckRDP::readName(string namefile) { string name; - #ifdef USE_MPI - - MPI_File inMPI; - MPI_Offset size; - MPI_Status status; - - //char* inFileName = new char[namefile.length()]; - //memcpy(inFileName, namefile.c_str(), namefile.length()); - - char inFileName[1024]; - strcpy(inFileName, namefile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - MPI_File_get_size(inMPI, &size); - - //delete inFileName; - - char* buffer = new char[size]; - MPI_File_read(inMPI, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - delete buffer; - - while(!iss.eof()) { - iss >> name; m->gobble(iss); - names[name] = name; - } - - MPI_File_close(&inMPI); - - #else - ifstream in; m->openInputFile(namefile, in); @@ -300,8 +222,6 @@ void ChimeraCheckRDP::readName(string namefile) { } in.close(); - #endif - } catch(exception& e) { m->errorOut(e, "ChimeraCheckRDP", "readName"); @@ -346,86 +266,6 @@ int ChimeraCheckRDP::calcKmers(map query, map subject) { exit(1); } } -#ifdef USE_MPI -//*************************************************************************************************************** -void ChimeraCheckRDP::makeSVGpic(vector info) { - try{ - - string file = outputDir + querySeq->getName() + ".chimeracheck.svg"; - - MPI_File outSVG; - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - //char* FileName = new char[file.length()]; - //memcpy(FileName, file.c_str(), file.length()); - - char FileName[1024]; - strcpy(FileName, file.c_str()); - - MPI_File_open(MPI_COMM_SELF, FileName, outMode, MPI_INFO_NULL, &outSVG); //comm, filename, mode, info, filepointer - - //delete FileName; - - int width = (info.size()*5) + 150; - - string outString = ""; - - outString += "\n"; - outString += "\n"; - outString += "Plotted IS values for " + querySeq->getName() + "\n"; - - outString += "\n"; - outString += "\n"; - - outString += "" + toString(info[0].midpoint) + "\n"; - outString += "" + toString(info[info.size()-1].midpoint) + "\n"; - outString += "Base Positions\n"; - - outString += "0\n"; - - outString += "IS\n"; - - - //find max is score - float biggest = 0.0; - for (int i = 0; i < info.size(); i++) { - if (info[i].score > biggest) { - biggest = info[i].score; - } - } - - outString += "" + toString(biggest) + "\n"; - - int scaler2 = 500 / biggest; - - - outString += " "; - for (int i = 0; i < info.size(); i++) { - if(info[i].score < 0) { info[i].score = 0; } - outString += toString(((i*5) + 75)) + "," + toString((600 - (info[i].score * scaler2))) + " "; - } - - outString += "\"/> "; - outString += "\n\n"; - - MPI_Status status; - int length = outString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outString.c_str(), length); - - MPI_File_write(outSVG, buf2, length, MPI_CHAR, &status); - delete buf2; - - MPI_File_close(&outSVG); - - } - catch(exception& e) { - m->errorOut(e, "ChimeraCheckRDP", "makeSVGpic"); - exit(1); - } -} -#else //*************************************************************************************************************** void ChimeraCheckRDP::makeSVGpic(vector info) { try{ @@ -483,7 +323,6 @@ void ChimeraCheckRDP::makeSVGpic(vector info) { exit(1); } } -#endif //***************************************************************************************************************/ diff --git a/source/chimera/chimeracheckrdp.h b/source/chimera/chimeracheckrdp.h index 25db15b6..91d0f7d2 100644 --- a/source/chimera/chimeracheckrdp.h +++ b/source/chimera/chimeracheckrdp.h @@ -31,10 +31,6 @@ class ChimeraCheckRDP : public Chimera { int getChimeras(Sequence*); Sequence print(ostream&, ostream&); - #ifdef USE_MPI - Sequence print(MPI_File&, MPI_File&); - #endif - private: Sequence* querySeq; diff --git a/source/chimera/chimeraslayer.cpp b/source/chimera/chimeraslayer.cpp index e4f8791a..531073c1 100644 --- a/source/chimera/chimeraslayer.cpp +++ b/source/chimera/chimeraslayer.cpp @@ -46,7 +46,7 @@ int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int num } } //*************************************************************************************************************** -//template=self, byGroup parameter used for mpienabled version to read the template as MPI_COMM_SELF instead of MPI_COMM_WORLD +//template=self ChimeraSlayer::ChimeraSlayer(string file, string temp, bool trim, map& prior, string mode, int k, int ms, int mms, int win, float div, int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid, bool bg) : Chimera() { try { @@ -180,33 +180,7 @@ int ChimeraSlayer::doPrep() { string leftTemplateFileName = templatePath + "left." + m->getRootName(m->getSimpleName(templateFileName)); databaseLeft = new KmerDB(leftTemplateFileName, kmerSize); - #ifdef USE_MPI - for (int i = 0; i < templateSeqs.size(); i++) { - - if (m->control_pressed) { return 0; } - - string leftFrag = templateSeqs[i]->getUnaligned(); - leftFrag = leftFrag.substr(0, int(leftFrag.length() * 0.33)); - - Sequence leftTemp(templateSeqs[i]->getName(), leftFrag); - databaseLeft->addSequence(leftTemp); - } - databaseLeft->generateDB(); - databaseLeft->setNumSeqs(templateSeqs.size()); - - for (int i = 0; i < templateSeqs.size(); i++) { - if (m->control_pressed) { return 0; } - - string rightFrag = templateSeqs[i]->getUnaligned(); - rightFrag = rightFrag.substr(int(rightFrag.length() * 0.66)); - - Sequence rightTemp(templateSeqs[i]->getName(), rightFrag); - databaseRight->addSequence(rightTemp); - } - databaseRight->generateDB(); - databaseRight->setNumSeqs(templateSeqs.size()); - - #else + //leftside kmerDBNameLeft = leftTemplateFileName.substr(0,leftTemplateFileName.find_last_of(".")+1) + char('0'+ kmerSize) + "mer"; ifstream kmerFileTestLeft(kmerDBNameLeft.c_str()); @@ -267,7 +241,7 @@ int ChimeraSlayer::doPrep() { kmerFileTestRight.close(); databaseRight->setNumSeqs(templateSeqs.size()); - #endif + }else if (searchMethod == "blast") { //generate blastdb @@ -328,33 +302,6 @@ vector ChimeraSlayer::getTemplate(Sequence q, vector& user string leftTemplateFileName = templatePath + "left." + m->getRootName(m->getSimpleName(templateFileName)); databaseLeft = new KmerDB(leftTemplateFileName, kmerSize); -#ifdef USE_MPI - for (int i = 0; i < userTemplate.size(); i++) { - - if (m->control_pressed) { return userTemplate; } - - string leftFrag = userTemplate[i]->getUnaligned(); - leftFrag = leftFrag.substr(0, int(leftFrag.length() * 0.33)); - - Sequence leftTemp(userTemplate[i]->getName(), leftFrag); - databaseLeft->addSequence(leftTemp); - } - databaseLeft->generateDB(); - databaseLeft->setNumSeqs(userTemplate.size()); - - for (int i = 0; i < userTemplate.size(); i++) { - if (m->control_pressed) { return userTemplate; } - - string rightFrag = userTemplate[i]->getUnaligned(); - rightFrag = rightFrag.substr(int(rightFrag.length() * 0.66)); - - Sequence rightTemp(userTemplate[i]->getName(), rightFrag); - databaseRight->addSequence(rightTemp); - } - databaseRight->generateDB(); - databaseRight->setNumSeqs(userTemplate.size()); - -#else for (int i = 0; i < userTemplate.size(); i++) { @@ -381,7 +328,7 @@ vector ChimeraSlayer::getTemplate(Sequence q, vector& user } databaseRight->generateDB(); databaseRight->setNumSeqs(userTemplate.size()); -#endif + }else if (searchMethod == "blast") { //generate blastdb @@ -570,225 +517,6 @@ Sequence ChimeraSlayer::print(ostream& out, ostream& outAcc, data_results leftPi } } -#ifdef USE_MPI -//*************************************************************************************************************** -Sequence ChimeraSlayer::print(MPI_File& out, MPI_File& outAcc, data_results leftPiece, data_results rightPiece, bool& chimFlag) { - try { - MPI_Status status; - bool results = false; - string outAccString = ""; - string outputString = ""; - chimFlag = false; - - Sequence trim; - - if (trimChimera) { - string aligned = leftPiece.trimQuery.getAligned() + rightPiece.trimQuery.getAligned(); - trim.setName(leftPiece.trimQuery.getName()); trim.setAligned(aligned); - } - - - if ((leftPiece.flag == "yes") || (rightPiece.flag == "yes")) { - - string chimeraFlag = "no"; - if (leftPiece.flag == "yes") { - - if( (leftPiece.results[0].bsa >= minBS && leftPiece.results[0].divr_qla_qrb >= divR) - || - (leftPiece.results[0].bsb >= minBS && leftPiece.results[0].divr_qlb_qra >= divR) ) { chimeraFlag = "yes"; } - } - - if (rightPiece.flag == "yes") { - if ( (rightPiece.results[0].bsa >= minBS && rightPiece.results[0].divr_qla_qrb >= divR) - || - (rightPiece.results[0].bsb >= minBS && rightPiece.results[0].divr_qlb_qra >= divR) ) { chimeraFlag = "yes"; } - } - - bool rightChimeric = false; - bool leftChimeric = false; - - cout << endl; - - if (chimeraFlag == "yes") { - //which peice is chimeric or are both - if (rightPiece.flag == "yes") { if ((rightPiece.results[0].bsa >= minBS) || (rightPiece.results[0].bsb >= minBS)) { rightChimeric = true; } } - if (leftPiece.flag == "yes") { if ((leftPiece.results[0].bsa >= minBS) || (leftPiece.results[0].bsb >= minBS)) { leftChimeric = true; } } - - if (rightChimeric || leftChimeric) { - cout << querySeq.getName() << "\tyes" << endl; - outAccString += querySeq.getName() + "\n"; - results = true; - - if (templateFileName == "self") { chimericSeqs.insert(querySeq.getName()); } - - //write to accnos file - int length = outAccString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outAccString.c_str(), length); - - MPI_File_write_shared(outAcc, buf2, length, MPI_CHAR, &status); - chimFlag = true; - delete buf2; - - if (trimChimera) { - string newAligned = trim.getAligned(); - - //right side is fine so keep that - if ((leftChimeric) && (!rightChimeric)) { - for (int i = 0; i < leftPiece.results[0].winREnd; i++) { newAligned[i] = '.'; } - }else if ((!leftChimeric) && (rightChimeric)) { //leftside is fine so keep that - for (int i = (rightPiece.results[0].winLStart-1); i < newAligned.length(); i++) { newAligned[i] = '.'; } - }else { //both sides are chimeric, keep longest piece - - int lengthLeftLeft = leftPiece.results[0].winLEnd - leftPiece.results[0].winLStart; - int lengthLeftRight = leftPiece.results[0].winREnd - leftPiece.results[0].winRStart; - - int longest = 1; // leftleft = 1, leftright = 2, rightleft = 3 rightright = 4 - int length = lengthLeftLeft; - if (lengthLeftLeft < lengthLeftRight) { longest = 2; length = lengthLeftRight; } - - int lengthRightLeft = rightPiece.results[0].winLEnd - rightPiece.results[0].winLStart; - int lengthRightRight = rightPiece.results[0].winREnd - rightPiece.results[0].winRStart; - - if (lengthRightLeft > length) { longest = 3; length = lengthRightLeft; } - if (lengthRightRight > length) { longest = 4; } - - if (longest == 1) { //leftleft - for (int i = (leftPiece.results[0].winRStart-1); i < newAligned.length(); i++) { newAligned[i] = '.'; } - }else if (longest == 2) { //leftright - //get rid of leftleft - for (int i = (leftPiece.results[0].winLStart-1); i < (leftPiece.results[0].winLEnd-1); i++) { newAligned[i] = '.'; } - //get rid of right - for (int i = (rightPiece.results[0].winLStart-1); i < newAligned.length(); i++) { newAligned[i] = '.'; } - }else if (longest == 3) { //rightleft - //get rid of left - for (int i = 0; i < leftPiece.results[0].winREnd; i++) { newAligned[i] = '.'; } - //get rid of rightright - for (int i = (rightPiece.results[0].winRStart-1); i < newAligned.length(); i++) { newAligned[i] = '.'; } - }else { //rightright - //get rid of left - for (int i = 0; i < leftPiece.results[0].winREnd; i++) { newAligned[i] = '.'; } - //get rid of rightleft - for (int i = (rightPiece.results[0].winLStart-1); i < (rightPiece.results[0].winLEnd-1); i++) { newAligned[i] = '.'; } - } - } - - trim.setAligned(newAligned); - } - - } - } - - outputString = getBlock(leftPiece, rightPiece, leftChimeric, rightChimeric, chimeraFlag); - - //write to output file - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(out, buf, length, MPI_CHAR, &status); - delete buf; - - }else { - outputString += querySeq.getName() + "\tno\n"; - - //write to output file - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(out, buf, length, MPI_CHAR, &status); - delete buf; - } - - - return trim; - } - catch(exception& e) { - m->errorOut(e, "ChimeraSlayer", "print"); - exit(1); - } -} -//*************************************************************************************************************** -Sequence ChimeraSlayer::print(MPI_File& out, MPI_File& outAcc) { - try { - MPI_Status status; - bool results = false; - string outAccString = ""; - string outputString = ""; - - Sequence trim; - if (trimChimera) { trim.setName(trimQuery.getName()); trim.setAligned(trimQuery.getAligned()); } - - if (chimeraFlags == "yes") { - string chimeraFlag = "no"; - if( (chimeraResults[0].bsa >= minBS && chimeraResults[0].divr_qla_qrb >= divR) - || - (chimeraResults[0].bsb >= minBS && chimeraResults[0].divr_qlb_qra >= divR) ) { chimeraFlag = "yes"; } - - - if (chimeraFlag == "yes") { - if ((chimeraResults[0].bsa >= minBS) || (chimeraResults[0].bsb >= minBS)) { - cout << querySeq.getName() << "\tyes" << endl; - outAccString += querySeq.getName() + "\n"; - results = true; - - if (templateFileName == "self") { chimericSeqs.insert(querySeq.getName()); } - - //write to accnos file - int length = outAccString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outAccString.c_str(), length); - - MPI_File_write_shared(outAcc, buf2, length, MPI_CHAR, &status); - delete buf2; - - if (trimChimera) { - int lengthLeft = chimeraResults[0].winLEnd - chimeraResults[0].winLStart; - int lengthRight = chimeraResults[0].winREnd - chimeraResults[0].winRStart; - - string newAligned = trim.getAligned(); - if (lengthLeft > lengthRight) { //trim right - for (int i = (chimeraResults[0].winRStart-1); i < newAligned.length(); i++) { newAligned[i] = '.'; } - }else { //trim left - for (int i = 0; i < (chimeraResults[0].winLEnd-1); i++) { newAligned[i] = '.'; } - } - trim.setAligned(newAligned); - } - } - } - - outputString = getBlock(chimeraResults[0], chimeraFlag); - - //write to output file - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(out, buf, length, MPI_CHAR, &status); - delete buf; - - }else { - outputString += querySeq.getName() + "\tno\n"; - - //write to output file - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(out, buf, length, MPI_CHAR, &status); - delete buf; - } - - return trim; - } - catch(exception& e) { - m->errorOut(e, "ChimeraSlayer", "print"); - exit(1); - } -} -#endif - //*************************************************************************************************************** int ChimeraSlayer::getChimeras(Sequence* query) { try { diff --git a/source/chimera/chimeraslayer.h b/source/chimera/chimeraslayer.h index 7bf663af..97c4a654 100644 --- a/source/chimera/chimeraslayer.h +++ b/source/chimera/chimeraslayer.h @@ -38,11 +38,6 @@ class ChimeraSlayer : public Chimera { int getNumNoParents() { return numNoParents; } data_results getResults() { return printResults; } - #ifdef USE_MPI - Sequence print(MPI_File&, MPI_File&); - Sequence print(MPI_File&, MPI_File&, data_results, data_results, bool&); - #endif - private: Sequence querySeq; Sequence trimQuery; diff --git a/source/chimera/pintail.cpp b/source/chimera/pintail.cpp index eb4c2ecf..87b2ba9f 100644 --- a/source/chimera/pintail.cpp +++ b/source/chimera/pintail.cpp @@ -70,10 +70,7 @@ int Pintail::doPrep() { else { decalc->setAlignmentLength(seqMask.length()); } decalc->setMask(seqMask); - - #ifdef USE_MPI - //do nothing - #else + #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) //find breakup of templatefile for quantiles if (processors == 1) { templateLines.push_back(new linePair(0, templateSeqs.size())); } @@ -87,7 +84,6 @@ int Pintail::doPrep() { #else templateLines.push_back(new linePair(0, templateSeqs.size())); #endif - #endif m->mothurOut("Getting conservation... "); cout.flush(); if (consfile == "") { @@ -288,66 +284,6 @@ Sequence Pintail::print(ostream& out, ostream& outAcc) { exit(1); } } -#ifdef USE_MPI -//*************************************************************************************************************** -Sequence Pintail::print(MPI_File& out, MPI_File& outAcc) { - try { - - string outputString = ""; - int index = ceil(deviation); - - //is your DE value higher than the 95% - string chimera; - if (index != 0) { //if index is 0 then its an exact match to a template seq - if (quantiles[index][4] == 0.0) { - chimera = "Your template does not include sequences that provide quantile values at distance " + toString(index); - }else { - if (DE > quantiles[index][4]) { chimera = "Yes"; } - else { chimera = "No"; } - } - }else{ chimera = "No"; } - - outputString += querySeq->getName() + "\tdiv: " + toString(deviation) + "\tstDev: " + toString(DE) + "\tchimera flag: " + chimera + "\n"; - if (chimera == "Yes") { - cout << querySeq->getName() << "\tdiv: " << toString(deviation) << "\tstDev: " << toString(DE) << "\tchimera flag: " << chimera << endl; - string outAccString = querySeq->getName() + "\n"; - - MPI_Status statusAcc; - int length = outAccString.length(); - char* buf = new char[length]; - memcpy(buf, outAccString.c_str(), length); - - MPI_File_write_shared(outAcc, buf, length, MPI_CHAR, &statusAcc); - delete buf; - - return *querySeq; - } - outputString += "Observed"; - - for (int j = 0; j < obsDistance.size(); j++) { outputString += "\t" + toString(obsDistance[j]); } - outputString += "\n"; - - outputString += "Expected"; - - for (int m = 0; m < expectedDistance.size(); m++) { outputString += "\t" + toString(expectedDistance[m]); } - outputString += "\n"; - - MPI_Status status; - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - - MPI_File_write_shared(out, buf2, length, MPI_CHAR, &status); - delete buf2; - - return *querySeq; - } - catch(exception& e) { - m->errorOut(e, "Pintail", "print"); - exit(1); - } -} -#endif //*************************************************************************************************************** int Pintail::getChimeras(Sequence* query) { try { @@ -425,55 +361,6 @@ vector Pintail::readFreq() { vector prob; set h = decalc->getPos(); //positions of bases in masking sequence - #ifdef USE_MPI - - MPI_File inMPI; - MPI_Offset size; - MPI_Status status; - - //char* inFileName = new char[consfile.length()]; - //memcpy(inFileName, consfile.c_str(), consfile.length()); - - char inFileName[1024]; - strcpy(inFileName, consfile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - MPI_File_get_size(inMPI, &size); - //delete inFileName; - - char* buffer = new char[size]; - MPI_File_read(inMPI, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - delete buffer; - - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - - //read version - string line = m->getline(iss); m->gobble(iss); - - while(!iss.eof()) { - iss >> pos >> num; - - if (h.count(pos) > 0) { - float Pi; - Pi = (num - 0.25) / 0.75; - - //cannot have probability less than 0. - if (Pi < 0) { Pi = 0.0; } - - //do you want this spot - prob.push_back(Pi); - } - - m->gobble(iss); - } - - MPI_File_close(&inMPI); - - #else - ifstream in; m->openInputFile(consfile, in); @@ -498,9 +385,6 @@ vector Pintail::readFreq() { m->gobble(in); } in.close(); - - #endif - return prob; } @@ -699,55 +583,6 @@ vector< vector > Pintail::readQuantiles() { //to fill 0 quan.push_back(temp); - #ifdef USE_MPI - - MPI_File inMPI; - MPI_Offset size; - MPI_Status status; - - //char* inFileName = new char[quanfile.length()]; - //memcpy(inFileName, quanfile.c_str(), quanfile.length()); - - char inFileName[1024]; - strcpy(inFileName, quanfile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - MPI_File_get_size(inMPI, &size); - //delete inFileName; - - - char* buffer = new char[size]; - MPI_File_read(inMPI, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - delete buffer; - - //read version - string line = m->getline(iss); m->gobble(iss); - - while(!iss.eof()) { - iss >> num >> ten >> twentyfive >> fifty >> seventyfive >> ninetyfive >> ninetynine; - - temp.clear(); - - temp.push_back(ten); - temp.push_back(twentyfive); - temp.push_back(fifty); - temp.push_back(seventyfive); - temp.push_back(ninetyfive); - temp.push_back(ninetynine); - - quan.push_back(temp); - - m->gobble(iss); - } - - MPI_File_close(&inMPI); - - #else - ifstream in; m->openInputFile(quanfile, in); @@ -772,8 +607,7 @@ vector< vector > Pintail::readQuantiles() { m->gobble(in); } in.close(); - #endif - + return quan; } @@ -787,44 +621,12 @@ vector< vector > Pintail::readQuantiles() { void Pintail::printQuanFile(string file, string outputString) { try { - #ifdef USE_MPI - - MPI_File outQuan; - MPI_Status status; - - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - //char* FileName = new char[file.length()]; - //memcpy(FileName, file.c_str(), file.length()); - - char FileName[1024]; - strcpy(FileName, file.c_str()); - - if (pid == 0) { - MPI_File_open(MPI_COMM_SELF, FileName, outMode, MPI_INFO_NULL, &outQuan); //comm, filename, mode, info, filepointer - - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write(outQuan, buf, length, MPI_CHAR, &status); - delete buf; - - MPI_File_close(&outQuan); - } - - //delete FileName; - #else ofstream outQuan; m->openOutputFile(file, outQuan); outQuan << outputString; outQuan.close(); - #endif } catch(exception& e) { m->errorOut(e, "Pintail", "printQuanFile"); diff --git a/source/chimera/pintail.h b/source/chimera/pintail.h index c970fdd8..d70f93c0 100644 --- a/source/chimera/pintail.h +++ b/source/chimera/pintail.h @@ -32,11 +32,7 @@ class Pintail : public Chimera { void setCons(string c) { consfile = c; } void setQuantiles(string q) { quanfile = q; } - - #ifdef USE_MPI - Sequence print(MPI_File&, MPI_File&); - #endif - + private: Dist* distcalculator; diff --git a/source/classifier/bayesian.cpp b/source/classifier/bayesian.cpp index 8278afb3..9ac240db 100644 --- a/source/classifier/bayesian.cpp +++ b/source/classifier/bayesian.cpp @@ -116,15 +116,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) { for (int j = 0; j < wordGenusProb.size(); j++) { wordGenusProb[j].resize(genusNodes.size()); } ofstream out; ofstream out2; - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - #endif - if (shortcuts) { m->openOutputFile(probFileName, out); @@ -139,28 +131,16 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) { out2 << "#" << m->getVersion() << endl; } - #ifdef USE_MPI - } - #endif + //for each word for (int i = 0; i < numKmers; i++) { //m->mothurOut("[DEBUG]: kmer = " + toString(i) + "\n"); if (m->control_pressed) { break; } - - #ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - #endif if (shortcuts) { out << i << '\t'; } - #ifdef USE_MPI - } - #endif - vector seqsWithWordi = database->getSequencesWithKmer(i); //for each sequence with that word @@ -182,53 +162,23 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) { wordGenusProb[i][k] = log((count[k] + probabilityInTemplate) / (float) (genusTotals[k] + 1)); - if (count[k] != 0) { - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - #endif - + if (count[k] != 0) { if (shortcuts) { out << k << '\t' << wordGenusProb[i][k] << '\t' ; } - - #ifdef USE_MPI - } - #endif - - numNotZero++; + numNotZero++; } } - #ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - #endif - - if (shortcuts) { - out << endl; - out2 << probabilityInTemplate << '\t' << numNotZero << '\t' << log(probabilityInTemplate) << endl; - } - - #ifdef USE_MPI - } - #endif + + if (shortcuts) { + out << endl; + out2 << probabilityInTemplate << '\t' << numNotZero << '\t' << log(probabilityInTemplate) << endl; + } + } - - #ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - #endif - - if (shortcuts) { - out.close(); - out2.close(); - } - #ifdef USE_MPI - } - #endif + if (shortcuts) { + out.close(); + out2.close(); + } //read in new phylotree with less info. - its faster ifstream phyloTreeTest(phyloTreeName.c_str()); @@ -521,189 +471,53 @@ map Bayesian::parseTaxMap(string newTax) { void Bayesian::readProbFile(ifstream& in, ifstream& inNum, string inName, string inNumName) { try{ - #ifdef USE_MPI - - int pid, num, num2, processors; - vector positions; - vector positions2; - - MPI_Status status; - MPI_File inMPI; - MPI_File inMPI2; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - int tag = 2001; - - char inFileName[1024]; - strcpy(inFileName, inNumName.c_str()); - - char inFileName2[1024]; - strcpy(inFileName2, inName.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, inFileName2, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI2); //comm, filename, mode, info, filepointer - - if (pid == 0) { - positions = m->setFilePosEachLine(inNumName, num); - positions2 = m->setFilePosEachLine(inName, num2); - - for(int i = 1; i < processors; i++) { - MPI_Send(&num, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&positions[0], (num+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - - MPI_Send(&num2, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&positions2[0], (num2+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - }else{ - MPI_Recv(&num, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - positions.resize(num+1); - MPI_Recv(&positions[0], (num+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - MPI_Recv(&num2, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - positions2.resize(num2+1); - MPI_Recv(&positions2[0], (num2+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - } - - //read version - int length = positions2[1] - positions2[0]; - char* buf5 = new char[length]; - - MPI_File_read_at(inMPI2, positions2[0], buf5, length, MPI_CHAR, &status); - delete buf5; - - //read numKmers - length = positions2[2] - positions2[1]; - char* buf = new char[length]; - - MPI_File_read_at(inMPI2, positions2[1], buf, length, MPI_CHAR, &status); - - string tempBuf = buf; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - delete buf; - - istringstream iss (tempBuf,istringstream::in); - iss >> numKmers; - - //initialze probabilities - wordGenusProb.resize(numKmers); - - for (int j = 0; j < wordGenusProb.size(); j++) { wordGenusProb[j].resize(genusNodes.size()); } - - int kmer, name; - vector numbers; numbers.resize(numKmers); - float prob; - vector zeroCountProb; zeroCountProb.resize(numKmers); - WordPairDiffArr.resize(numKmers); - - //read version - length = positions[1] - positions[0]; - char* buf6 = new char[length]; - - MPI_File_read_at(inMPI2, positions[0], buf6, length, MPI_CHAR, &status); - delete buf6; - - //read file - for(int i=1;i length) { tempBuf = tempBuf.substr(0, length); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - float probTemp; - iss >> zeroCountProb[i] >> numbers[i] >> probTemp; - WordPairDiffArr[i].prob = probTemp; - - } - - MPI_File_close(&inMPI); - - for(int i=2;i length) { tempBuf = tempBuf.substr(0, length); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - - iss >> kmer; - - //set them all to zero value - for (int i = 0; i < genusNodes.size(); i++) { - wordGenusProb[kmer][i] = log(zeroCountProb[kmer] / (float) (genusTotals[i]+1)); - } - - //get probs for nonzero values - for (int i = 0; i < numbers[kmer]; i++) { - iss >> name >> prob; - wordGenusProb[kmer][name] = prob; - } - - } - MPI_File_close(&inMPI2); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #else - //read version - string line = m->getline(in); m->gobble(in); - - in >> numKmers; m->gobble(in); - //cout << threadID << '\t' << line << '\t' << numKmers << &in << '\t' << &inNum << '\t' << genusNodes.size() << endl; - //initialze probabilities - wordGenusProb.resize(numKmers); - - for (int j = 0; j < wordGenusProb.size(); j++) { wordGenusProb[j].resize(genusNodes.size()); } - - int kmer, name, count; count = 0; - vector num; num.resize(numKmers); - float prob; - vector zeroCountProb; zeroCountProb.resize(numKmers); - WordPairDiffArr.resize(numKmers); - - //read version - string line2 = m->getline(inNum); m->gobble(inNum); - float probTemp; - //cout << threadID << '\t' << line2 << '\t' << this << endl; - while (inNum) { - inNum >> zeroCountProb[count] >> num[count] >> probTemp; - WordPairDiffArr[count].prob = probTemp; - count++; - m->gobble(inNum); - //cout << threadID << '\t' << count << endl; - } - inNum.close(); - //cout << threadID << '\t' << "here1 " << &wordGenusProb << '\t' << &num << endl; // - //cout << threadID << '\t' << &genusTotals << '\t' << endl; - //cout << threadID << '\t' << genusNodes.size() << endl; - while(in) { - in >> kmer; - //cout << threadID << '\t' << kmer << endl; - //set them all to zero value - for (int i = 0; i < genusNodes.size(); i++) { - wordGenusProb[kmer][i] = log(zeroCountProb[kmer] / (float) (genusTotals[i]+1)); - } - //cout << threadID << '\t' << num[kmer] << "here" << endl; - //get probs for nonzero values - for (int i = 0; i < num[kmer]; i++) { - in >> name >> prob; - wordGenusProb[kmer][name] = prob; - } - - m->gobble(in); - } - in.close(); - //cout << threadID << '\t' << "here" << endl; - #endif + //read version + string line = m->getline(in); m->gobble(in); + + in >> numKmers; m->gobble(in); + //initialze probabilities + wordGenusProb.resize(numKmers); + + for (int j = 0; j < wordGenusProb.size(); j++) { wordGenusProb[j].resize(genusNodes.size()); } + + int kmer, name, count; count = 0; + vector num; num.resize(numKmers); + float prob; + vector zeroCountProb; zeroCountProb.resize(numKmers); + WordPairDiffArr.resize(numKmers); + + //read version + string line2 = m->getline(inNum); m->gobble(inNum); + float probTemp; + + while (inNum) { + inNum >> zeroCountProb[count] >> num[count] >> probTemp; + WordPairDiffArr[count].prob = probTemp; + count++; + m->gobble(inNum); + + } + inNum.close(); + + while(in) { + in >> kmer; + + //set them all to zero value + for (int i = 0; i < genusNodes.size(); i++) { + wordGenusProb[kmer][i] = log(zeroCountProb[kmer] / (float) (genusTotals[i]+1)); + } + + //get probs for nonzero values + for (int i = 0; i < num[kmer]; i++) { + in >> name >> prob; + wordGenusProb[kmer][name] = prob; + } + + m->gobble(in); + } + in.close(); + + } catch(exception& e) { m->errorOut(e, "Bayesian", "readProbFile"); diff --git a/source/classifier/classify.cpp b/source/classifier/classify.cpp index 344b5e1b..7c6cc50b 100644 --- a/source/classifier/classify.cpp +++ b/source/classifier/classify.cpp @@ -83,73 +83,6 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me int start = time(NULL); m->mothurOut("Generating search database... "); cout.flush(); - #ifdef USE_MPI - int pid, processors; - vector positions; - int tag = 2001; - - MPI_Status status; - MPI_File inMPI; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - //char* inFileName = new char[tempFile.length()]; - //memcpy(inFileName, tempFile.c_str(), tempFile.length()); - - char inFileName[1024]; - strcpy(inFileName, tempFile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - //delete inFileName; - - if (pid == 0) { //only one process needs to scan file - positions = m->setFilePosFasta(tempFile, numSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&positions[0], (numSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - }else{ - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - positions.resize(numSeqs+1); - MPI_Recv(&positions[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - } - - //create database - if(method == "kmer") { database = new KmerDB(tempFile, kmerSize); } - else if(method == "suffix") { database = new SuffixDB(numSeqs); } - else if(method == "blast") { database = new BlastDB(tempFile.substr(0,tempFile.find_last_of(".")+1), gapOpen, gapExtend, match, misMatch, "", pid); } - else if(method == "distance") { database = new DistanceDB(); } - else { - m->mothurOut(method + " is not a valid search option. I will run the command using kmer, ksize=8."); m->mothurOutEndLine(); - database = new KmerDB(tempFile, 8); - } - - //read file - for(int i=0;i length) { tempBuf = tempBuf.substr(0, length); } - delete buf4; - istringstream iss (tempBuf,istringstream::in); - - Sequence temp(iss); - if (temp.getName() != "") { - if (rdb->save) { rdb->referenceSeqs.push_back(temp); } - names.push_back(temp.getName()); - database->addSequence(temp); - } - } - - database->generateDB(); - MPI_File_close(&inMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #else //need to know number of template seqs for suffixdb if (method == "suffix") { @@ -215,7 +148,6 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me } fastaFile.close(); } - #endif database->setNumSeqs(names.size()); @@ -249,64 +181,6 @@ int Classify::readTaxonomy(string file) { m->mothurOut("Reading in the " + file + " taxonomy...\t"); cout.flush(); if (m->debug) { m->mothurOut("[DEBUG]: Taxonomies read in...\n"); } -#ifdef USE_MPI - int pid, num, processors; - vector positions; - int tag = 2001; - - MPI_Status status; - MPI_File inMPI; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - char inFileName[1024]; - strcpy(inFileName, file.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - //delete inFileName; - - if (pid == 0) { - positions = m->setFilePosEachLine(file, num); - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&num, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&positions[0], (num+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - }else{ - MPI_Recv(&num, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - positions.resize(num+1); - MPI_Recv(&positions[0], (num+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - } - - //read file - for(int i=0;i length) { tempBuf = tempBuf.substr(0, length); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - iss >> name; m->gobble(iss); - iss >> taxInfo; - if (m->debug) { m->mothurOut("[DEBUG]: name = " + name + " tax = " + taxInfo + "\n"); } - //commented out to save time with large templates. 10/7/13 - //if (m->inUsersGroups(name, names)) { - taxonomy[name] = taxInfo; - phyloTree->addSeqToTree(name, taxInfo); - //}else { - // m->mothurOut("[WARNING]: " + name + " is in your taxonomy file and not in your reference file, ignoring.\n"); - //} - } - - MPI_File_close(&inMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case -#else taxonomy.clear(); m->readTax(file, taxonomy, true); @@ -323,7 +197,7 @@ int Classify::readTaxonomy(string file) { //} } //taxonomy = tempTaxonomy; -#endif + phyloTree->assignHeirarchyIDs(0); phyloTree->setUp(file); diff --git a/source/classifier/phylosummary.h b/source/classifier/phylosummary.h index 4d3464f7..3018b313 100644 --- a/source/classifier/phylosummary.h +++ b/source/classifier/phylosummary.h @@ -29,7 +29,6 @@ struct rawTaxNode { }; /**************************************************************************************************/ -//doesn't use MPI ifdefs since only pid 0 uses this class class PhyloSummary { public: diff --git a/source/classifier/phylotree.cpp b/source/classifier/phylotree.cpp index 0adb058a..7054d969 100644 --- a/source/classifier/phylotree.cpp +++ b/source/classifier/phylotree.cpp @@ -36,80 +36,32 @@ PhyloTree::PhyloTree(ifstream& in, string filename){ numNodes = 0; numSeqs = 0; - #ifdef USE_MPI - MPI_File inMPI; - MPI_Offset size; - MPI_Status status; - - char inFileName[1024]; - strcpy(inFileName, filename.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - MPI_File_get_size(inMPI, &size); - - char* buffer = new char[size]; - MPI_File_read(inMPI, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - delete buffer; - - //read version - m->getline(iss); m->gobble(iss); - - iss >> numNodes; m->gobble(iss); - - tree.resize(numNodes); - - for (int i = 0; i < tree.size(); i++) { - iss >> tree[i].name >> tree[i].level >> tree[i].parent; m->gobble(iss); - } - - //read genus nodes - int numGenus = 0; - iss >> numGenus; m->gobble(iss); - - int gnode, gsize; - totals.clear(); - for (int i = 0; i < numGenus; i++) { - iss >> gnode >> gsize; m->gobble(iss); - - uniqueTaxonomies.insert(gnode); - totals.push_back(gsize); - } - - MPI_File_close(&inMPI); - - #else - //read version - string line = m->getline(in); m->gobble(in); - - in >> numNodes; m->gobble(in); - - tree.resize(numNodes); - - for (int i = 0; i < tree.size(); i++) { - in >> tree[i].name >> tree[i].level >> tree[i].parent; m->gobble(in); - } - - //read genus nodes - int numGenus = 0; - in >> numGenus; m->gobble(in); - - int gnode, gsize; - totals.clear(); - for (int i = 0; i < numGenus; i++) { - in >> gnode >> gsize; m->gobble(in); - - uniqueTaxonomies.insert(gnode); - totals.push_back(gsize); - } - - in.close(); - - #endif - + //read version + string line = m->getline(in); m->gobble(in); + + in >> numNodes; m->gobble(in); + + tree.resize(numNodes); + + for (int i = 0; i < tree.size(); i++) { + in >> tree[i].name >> tree[i].level >> tree[i].parent; m->gobble(in); + } + + //read genus nodes + int numGenus = 0; + in >> numGenus; m->gobble(in); + + int gnode, gsize; + totals.clear(); + for (int i = 0; i < numGenus; i++) { + in >> gnode >> gsize; m->gobble(in); + + uniqueTaxonomies.insert(gnode); + totals.push_back(gsize); + } + + in.close(); + } catch(exception& e) { m->errorOut(e, "PhyloTree", "PhyloTree"); @@ -129,66 +81,15 @@ PhyloTree::PhyloTree(string tfile){ calcTotals = true; string name, tax; - #ifdef USE_MPI - int pid, num, processors; - vector positions; - - MPI_Status status; - MPI_File inMPI; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - char inFileName[1024]; - strcpy(inFileName, tfile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - - if (pid == 0) { - positions = m->setFilePosEachLine(tfile, num); - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&num, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&positions[0], (num+1), MPI_LONG, i, 2001, MPI_COMM_WORLD); - } - }else{ - MPI_Recv(&num, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - positions.resize(num+1); - MPI_Recv(&positions[0], (num+1), MPI_LONG, 0, 2001, MPI_COMM_WORLD, &status); - } - - //read file - for(int i=0;i length) { tempBuf = tempBuf.substr(0, length); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - iss >> name >> tax; - addSeqToTree(name, tax); - } - - MPI_File_close(&inMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - - #else - map temp; - m->readTax(tfile, temp, true); + map temp; + m->readTax(tfile, temp, true); - for (map::iterator itTemp = temp.begin(); itTemp != temp.end();) { - addSeqToTree(itTemp->first, itTemp->second); - temp.erase(itTemp++); - } - #endif - - assignHeirarchyIDs(0); + for (map::iterator itTemp = temp.begin(); itTemp != temp.end();) { + addSeqToTree(itTemp->first, itTemp->second); + temp.erase(itTemp++); + } + assignHeirarchyIDs(0); string unknownTax = "unknown;"; //added last taxon until you get desired level @@ -407,16 +308,7 @@ void PhyloTree::assignHeirarchyIDs(int index){ void PhyloTree::setUp(string tfile){ try{ string taxFileNameTest = tfile.substr(0,tfile.find_last_of(".")+1) + "tree.sum"; - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { binUnclassified(taxFileNameTest); } - - #else - binUnclassified(taxFileNameTest); - #endif + binUnclassified(taxFileNameTest); } catch(exception& e) { m->errorOut(e, "PhyloTree", "setUp"); @@ -577,40 +469,26 @@ void PhyloTree::print(ofstream& out, vector& copy){ /**************************************************************************************************/ void PhyloTree::printTreeNodes(string treefilename) { try { - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { - - #endif - - ofstream outTree; - m->openOutputFile(treefilename, outTree); - - //output mothur version - outTree << "#" << m->getVersion() << endl; - - //print treenodes - outTree << tree.size() << endl; - for (int i = 0; i < tree.size(); i++) { - outTree << tree[i].name << '\t' << tree[i].level << '\t' << tree[i].parent << endl; - } - - //print genus nodes - outTree << endl << uniqueTaxonomies.size() << endl; - set::iterator it2; - for (it2=uniqueTaxonomies.begin(); it2!=uniqueTaxonomies.end(); it2++) { outTree << *it2 << '\t' << tree[*it2].accessions.size() << endl; } - outTree << endl; - - outTree.close(); - - #ifdef USE_MPI - } - #endif - - + ofstream outTree; + m->openOutputFile(treefilename, outTree); + + //output mothur version + outTree << "#" << m->getVersion() << endl; + + //print treenodes + outTree << tree.size() << endl; + for (int i = 0; i < tree.size(); i++) { + outTree << tree[i].name << '\t' << tree[i].level << '\t' << tree[i].parent << endl; + } + + //print genus nodes + outTree << endl << uniqueTaxonomies.size() << endl; + set::iterator it2; + for (it2=uniqueTaxonomies.begin(); it2!=uniqueTaxonomies.end(); it2++) { outTree << *it2 << '\t' << tree[*it2].accessions.size() << endl; } + outTree << endl; + + outTree.close(); + } catch(exception& e) { m->errorOut(e, "PhyloTree", "printTreeNodes"); diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index fa2ef2ff..9ca704d9 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -172,12 +172,6 @@ CommandFactory* CommandFactory::getInstance() { /***********************************************************/ /***********************************************************/ -//note: This class is resposible for knowing which commands are mpiEnabled, -//If a command is not enabled only process 0 will execute the command. -//This avoids redundant outputs on pieces of code we have not paralellized. -//If you add mpi code to a existing command you need to modify the list below or the code will hang on MPI blocking commands like FIle_open. -//example: commands["dist.seqs"] = "MPIEnabled"; - CommandFactory::CommandFactory(){ string s = ""; m = MothurOut::getInstance(); @@ -232,7 +226,7 @@ CommandFactory::CommandFactory(){ commands["pre.cluster"] = "pre.cluster"; commands["pcoa"] = "pcoa"; commands["otu.hierarchy"] = "otu.hierarchy"; - commands["set.dir"] = "MPIEnabled"; + commands["set.dir"] = "set.dir"; commands["merge.files"] = "merge.files"; commands["parse.list"] = "parse.list"; commands["set.logfile"] = "set.logfile"; @@ -272,30 +266,30 @@ CommandFactory::CommandFactory(){ commands["anosim"] = "anosim"; commands["make.fastq"] = "make.fastq"; commands["merge.groups"] = "merge.groups"; - commands["get.current"] = "MPIEnabled"; - commands["set.current"] = "MPIEnabled"; + commands["get.current"] = "get.current"; + commands["set.current"] = "set.current"; commands["get.commandinfo"] = "get.commandinfo"; commands["deunique.tree"] = "deunique.tree"; commands["count.seqs"] = "count.seqs"; commands["count.groups"] = "count.groups"; commands["clear.memory"] = "clear.memory"; - commands["pairwise.seqs"] = "MPIEnabled"; - commands["pipeline.pds"] = "MPIEnabled"; - commands["classify.seqs"] = "MPIEnabled"; - commands["dist.seqs"] = "MPIEnabled"; - commands["filter.seqs"] = "MPIEnabled"; - commands["align.seqs"] = "MPIEnabled"; - commands["chimera.ccode"] = "MPIEnabled"; - commands["chimera.check"] = "MPIEnabled"; - commands["chimera.slayer"] = "MPIEnabled"; + commands["pairwise.seqs"] = "pairwise.seqs"; + commands["pipeline.pds"] = "pipeline.pds"; + commands["classify.seqs"] = "classify.seqs"; + commands["dist.seqs"] = "dist.seqs"; + commands["filter.seqs"] = "filter.seqs"; + commands["align.seqs"] = "align.seqs"; + commands["chimera.ccode"] = "chimera.ccode"; + commands["chimera.check"] = "chimera.check"; + commands["chimera.slayer"] = "chimera.slayer"; commands["chimera.uchime"] = "chimera.uchime"; commands["chimera.perseus"] = "chimera.perseus"; - commands["chimera.pintail"] = "MPIEnabled"; - commands["chimera.bellerophon"] = "MPIEnabled"; - commands["screen.seqs"] = "MPIEnabled"; + commands["chimera.pintail"] = "chimera.pintail"; + commands["chimera.bellerophon"] = "chimera.bellerophon"; + commands["screen.seqs"] = "screen.seqs"; commands["summary.seqs"] = "summary.seqs"; - commands["cluster.split"] = "MPIEnabled"; - commands["shhh.flows"] = "MPIEnabled"; + commands["cluster.split"] = "cluster.split"; + commands["shhh.flows"] = "shhh.flows"; commands["sens.spec"] = "sens.spec"; commands["seq.error"] = "seq.error"; commands["summary.tax"] = "summary.tax"; @@ -316,7 +310,7 @@ CommandFactory::CommandFactory(){ commands["load.logfile"] = "load.logfile"; commands["make.table"] = "make.table"; commands["sff.multiple"] = "sff.multiple"; - commands["quit"] = "MPIEnabled"; + commands["quit"] = "quit"; commands["classify.rf"] = "classify.rf"; commands["classify.svm"] = "classify.svm"; commands["filter.shared"] = "filter.shared"; @@ -341,18 +335,6 @@ CommandFactory::CommandFactory(){ } -/***********************************************************/ - -/***********************************************************/ -bool CommandFactory::MPIEnabled(string commandName) { - bool mpi = false; - it = commands.find(commandName); - if (it != commands.end()) { - if (it->second == "MPIEnabled") { return true; } - } - return mpi; -} -/***********************************************************/ /***********************************************************/ CommandFactory::~CommandFactory(){ diff --git a/source/commandfactory.hpp b/source/commandfactory.hpp index b1db1921..be166f28 100644 --- a/source/commandfactory.hpp +++ b/source/commandfactory.hpp @@ -34,7 +34,6 @@ class CommandFactory { bool getAppend() { return append; } string getOutputDir() { return outputDir; } string getInputDir() { return inputDir; } - bool MPIEnabled(string); map getListCommands() { return commands; } private: diff --git a/source/commands/aligncommand.cpp b/source/commands/aligncommand.cpp index 6c1c7a3c..5205be36 100644 --- a/source/commands/aligncommand.cpp +++ b/source/commands/aligncommand.cpp @@ -334,112 +334,6 @@ int AlignCommand::execute(){ for (int i = 0; i < lines.size(); i++) { delete lines[i]; } lines.clear(); int start = time(NULL); -#ifdef USE_MPI - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - MPIWroteAccnos = false; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPIAlign; - MPI_File outMPIReport; - MPI_File outMPIAccnos; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outAlignFilename[1024]; - strcpy(outAlignFilename, alignFileName.c_str()); - - char outReportFilename[1024]; - strcpy(outReportFilename, reportFileName.c_str()); - - char outAccnosFilename[1024]; - strcpy(outAccnosFilename, accnosFileName.c_str()); - - char inFileName[1024]; - strcpy(inFileName, candidateFileNames[s].c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outAlignFilename, outMode, MPI_INFO_NULL, &outMPIAlign); - MPI_File_open(MPI_COMM_WORLD, outReportFilename, outMode, MPI_INFO_NULL, &outMPIReport); - MPI_File_open(MPI_COMM_WORLD, outAccnosFilename, outMode, MPI_INFO_NULL, &outMPIAccnos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPIAlign); MPI_File_close(&outMPIReport); MPI_File_close(&outMPIAccnos); outputTypes.clear(); return 0; } - - if (pid == 0) { //you are the root process - - MPIPos = m->setFilePosFasta(candidateFileNames[s], numFastaSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numFastaSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numFastaSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to align - numSeqsPerProcessor = numFastaSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numFastaSeqs - pid * numSeqsPerProcessor; } - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPIAlign, outMPIReport, outMPIAccnos, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPIAlign); MPI_File_close(&outMPIReport); MPI_File_close(&outMPIAccnos); outputTypes.clear(); return 0; } - - for (int i = 1; i < processors; i++) { - bool tempResult; - MPI_Recv(&tempResult, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - if (tempResult != 0) { MPIWroteAccnos = true; } - } - }else{ //you are a child process - MPI_Recv(&numFastaSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numFastaSeqs+1); - MPI_Recv(&MPIPos[0], (numFastaSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - - //figure out how many sequences you have to align - numSeqsPerProcessor = numFastaSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numFastaSeqs - pid * numSeqsPerProcessor; } - - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPIAlign, outMPIReport, outMPIAccnos, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPIAlign); MPI_File_close(&outMPIReport); MPI_File_close(&outMPIAccnos); outputTypes.clear(); return 0; } - - MPI_Send(&MPIWroteAccnos, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPIAlign); - MPI_File_close(&outMPIReport); - MPI_File_close(&outMPIAccnos); - - //delete accnos file if blank - if (pid == 0) { - //delete accnos file if its blank else report to user - if (MPIWroteAccnos) { - m->mothurOut("Some of you sequences generated alignments that eliminated too many bases, a list is provided in " + accnosFileName + "."); - if (!flip) { - m->mothurOut(" If you set the flip parameter to true mothur will try aligning the reverse compliment as well."); - }else{ m->mothurOut(" If the reverse compliment proved to be better it was reported."); } - m->mothurOutEndLine(); - }else { - //MPI_Info info; - //MPI_File_delete(outAccnosFilename, info); - hasAccnos = false; - m->mothurRemove(accnosFileName); - } - } - -#else vector positions; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -480,22 +374,9 @@ int AlignCommand::execute(){ m->mothurOutEndLine(); } -#endif - - - #ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - outputNames.push_back(alignFileName); outputTypes["fasta"].push_back(alignFileName); outputNames.push_back(reportFileName); outputTypes["alignreport"].push_back(reportFileName); if (hasAccnos) { outputNames.push_back(accnosFileName); outputTypes["accnos"].push_back(accnosFileName); } - - #ifdef USE_MPI - } - #endif m->mothurOut("It took " + toString(time(NULL) - start) + " secs to align " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); @@ -675,186 +556,6 @@ int AlignCommand::driver(linePair* filePos, string alignFName, string reportFNam exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int AlignCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& alignFile, MPI_File& reportFile, MPI_File& accnosFile, vector& MPIPos){ - try { - string outputString = ""; - MPI_Status statusReport; - MPI_Status statusAlign; - MPI_Status statusAccnos; - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - NastReport report; - - if (pid == 0) { - outputString = report.getHeaders(); - int length = outputString.length(); - - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(reportFile, buf, length, MPI_CHAR, &statusReport); - - delete buf; - } - - Alignment* alignment; - int longestBase = templateDB->getLongestBase(); - if(align == "gotoh") { alignment = new GotohOverlap(gapOpen, gapExtend, match, misMatch, longestBase); } - else if(align == "needleman") { alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); } - else if(align == "blast") { alignment = new BlastAlignment(gapOpen, gapExtend, match, misMatch); } - else if(align == "noalign") { alignment = new NoAlign(); } - else { - m->mothurOut(align + " is not a valid alignment option. I will run the command using needleman."); - m->mothurOutEndLine(); - alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); - } - - - for(int i=0;icontrol_pressed) { delete alignment; return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - //memcpy(buf4, outputString.c_str(), length); - - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - - delete buf4; - - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - - istringstream iss (tempBuf,istringstream::in); - - Sequence* candidateSeq = new Sequence(iss); - report.setCandidate(candidateSeq); - - int origNumBases = candidateSeq->getNumBases(); - string originalUnaligned = candidateSeq->getUnaligned(); - int numBasesNeeded = origNumBases * threshold; - - if (candidateSeq->getName() != "") { //incase there is a commented sequence at the end of a file - if (candidateSeq->getUnaligned().length() > alignment->getnRows()) { - alignment->resize(candidateSeq->getUnaligned().length()+1); - } - - Sequence temp = templateDB->findClosestSequence(candidateSeq); - Sequence* templateSeq = new Sequence(temp.getName(), temp.getAligned()); - - float searchScore = templateDB->getSearchScore(); - - Nast* nast = new Nast(alignment, candidateSeq, templateSeq); - Sequence* copy; - - Nast* nast2; - bool needToDeleteCopy = false; //this is needed in case you have you enter the ifs below - //since nast does not make a copy of hte sequence passed, and it is used by the reporter below - //you can't delete the copy sequence til after you report, but you may choose not to create it in the first place - //so this bool tells you if you need to delete it - - //if there is a possibility that this sequence should be reversed - if (candidateSeq->getNumBases() < numBasesNeeded) { - - string wasBetter = ""; - //if the user wants you to try the reverse - if (flip) { - //get reverse compliment - copy = new Sequence(candidateSeq->getName(), originalUnaligned); - copy->reverseComplement(); - - //rerun alignment - Sequence temp2 = templateDB->findClosestSequence(copy); - Sequence* templateSeq2 = new Sequence(temp2.getName(), temp2.getAligned()); - - searchScore = templateDB->getSearchScore(); - - nast2 = new Nast(alignment, copy, templateSeq2); - - //check if any better - if (copy->getNumBases() > candidateSeq->getNumBases()) { - candidateSeq->setAligned(copy->getAligned()); //use reverse compliments alignment since its better - delete templateSeq; - templateSeq = templateSeq2; - delete nast; - nast = nast2; - needToDeleteCopy = true; - wasBetter = "\treverse complement produced a better alignment, so mothur used the reverse complement."; - }else{ - wasBetter = "\treverse complement did NOT produce a better alignment, please check sequence."; - delete nast2; - delete templateSeq2; - delete copy; - } - } - - //create accnos file with names - outputString = candidateSeq->getName() + wasBetter + "\n"; - - //send results to parent - int length = outputString.length(); - - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(accnosFile, buf, length, MPI_CHAR, &statusAccnos); - delete buf; - MPIWroteAccnos = true; - } - - report.setTemplate(templateSeq); - report.setSearchParameters(search, searchScore); - report.setAlignmentParameters(align, alignment); - report.setNastParameters(*nast); - - outputString = ">" + candidateSeq->getName() + "\n" + candidateSeq->getAligned() + "\n"; - - //send results to parent - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - - MPI_File_write_shared(alignFile, buf2, length, MPI_CHAR, &statusAlign); - - delete buf2; - - outputString = report.getReport(); - - //send results to parent - length = outputString.length(); - char* buf3 = new char[length]; - memcpy(buf3, outputString.c_str(), length); - - MPI_File_write_shared(reportFile, buf3, length, MPI_CHAR, &statusReport); - - delete buf3; - delete nast; - delete templateSeq; - if (needToDeleteCopy) { delete copy; } - } - delete candidateSeq; - - //report progress - if((i+1) % 100 == 0){ cout << (toString(i+1)) << endl; } - } - //report progress - if((num) % 100 != 0){ cout << (toString(num)) << endl; } - - return 1; - } - catch(exception& e) { - m->errorOut(e, "AlignCommand", "driverMPI"); - exit(1); - } -} -#endif /**************************************************************************************************/ int AlignCommand::createProcesses(string alignFileName, string reportFileName, string accnosFName, string filename) { diff --git a/source/commands/aligncommand.h b/source/commands/aligncommand.h index 73fffac8..7afe6c0c 100644 --- a/source/commands/aligncommand.h +++ b/source/commands/aligncommand.h @@ -46,18 +46,13 @@ class AlignCommand : public Command { private: vector processIDS; //processid vector lines; - bool MPIWroteAccnos; AlignmentDB* templateDB; int driver(linePair*, string, string, string, string); int createProcesses(string, string, string, string); void appendReportFiles(string, string); - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector&); - #endif - + string candidateFileName, templateFileName, distanceFileName, search, align, outputDir; float match, misMatch, gapOpen, gapExtend, threshold; int processors, kmerSize; diff --git a/source/commands/chimerabellerophoncommand.cpp b/source/commands/chimerabellerophoncommand.cpp index 3657c427..85166475 100644 --- a/source/commands/chimerabellerophoncommand.cpp +++ b/source/commands/chimerabellerophoncommand.cpp @@ -42,9 +42,6 @@ string ChimeraBellerophonCommand::getHelpString(){ helpString += "The filter parameter allows you to specify if you would like to apply a vertical and 50% soft filter, default=false. \n"; helpString += "The correction parameter allows you to put more emphasis on the distance between highly similar sequences and less emphasis on the differences between remote homologs, default=true.\n"; helpString += "The processors parameter allows you to specify how many processors you would like to use. The default is 1. \n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "The window parameter allows you to specify the window size for searching for chimeras, default is 1/4 sequence length. \n"; helpString += "The increment parameter allows you to specify how far you move each window while finding chimeric sequences, default is 25.\n"; helpString += "chimera.bellerophon(fasta=yourFastaFile, filter=yourFilter, correction=yourCorrection, processors=yourProcessors) \n"; @@ -247,29 +244,7 @@ int ChimeraBellerophonCommand::execute(){ chimera->getChimeras(); if (m->control_pressed) { delete chimera; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } outputTypes.clear(); return 0; } - - #ifdef USE_MPI - MPI_File outMPI; - MPI_File outMPIAccnos; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - char outFilename[1024]; - strcpy(outFilename, accnosFileName.c_str()); - - char FileName[1024]; - strcpy(FileName, outputFileName.c_str()); - - MPI_File_open(MPI_COMM_WORLD, FileName, outMode, MPI_INFO_NULL, &outMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPIAccnos); - - numSeqs = chimera->print(outMPI, outMPIAccnos, ""); - - MPI_File_close(&outMPI); - MPI_File_close(&outMPIAccnos); - - #else - + ofstream out; m->openOutputFile(outputFileName, out); @@ -279,9 +254,7 @@ int ChimeraBellerophonCommand::execute(){ numSeqs = chimera->print(out, out2, ""); out.close(); out2.close(); - - #endif - + if (m->control_pressed) { m->mothurRemove(accnosFileName); m->mothurRemove(outputFileName); for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } outputTypes.clear(); delete chimera; return 0; } m->mothurOutEndLine(); m->mothurOut("It took " + toString(time(NULL) - start) + " secs to check " + toString(numSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine(); diff --git a/source/commands/chimeraccodecommand.cpp b/source/commands/chimeraccodecommand.cpp index ffb4c765..b94ab26a 100644 --- a/source/commands/chimeraccodecommand.cpp +++ b/source/commands/chimeraccodecommand.cpp @@ -46,9 +46,6 @@ string ChimeraCcodeCommand::getHelpString(){ helpString += "The reference parameter allows you to enter a reference file containing known non-chimeric sequences, and is required. \n"; helpString += "The filter parameter allows you to specify if you would like to apply a vertical and 50% soft filter. \n"; helpString += "The processors parameter allows you to specify how many processors you would like to use. The default is 1. \n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "The mask parameter allows you to specify a file containing one sequence you wish to use as a mask for the your sequences. \n"; helpString += "The window parameter allows you to specify the window size for searching for chimeras. \n"; helpString += "The numwanted parameter allows you to specify how many sequences you would each query sequence compared with.\n"; @@ -312,93 +309,6 @@ int ChimeraCcodeCommand::execute(){ if (m->control_pressed) { delete chimera; for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); return 0; } - #ifdef USE_MPI - - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPI; - MPI_File outMPIAccnos; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outFilename[1024]; - strcpy(outFilename, outputFileName.c_str()); - - char outAccnosFilename[1024]; - strcpy(outAccnosFilename, accnosFileName.c_str()); - - char inFileName[1024]; - strcpy(inFileName, fastaFileNames[s].c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI); - MPI_File_open(MPI_COMM_WORLD, outAccnosFilename, outMode, MPI_INFO_NULL, &outMPIAccnos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); MPI_File_close(&outMPIAccnos); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } - - if (pid == 0) { //you are the root process - string outTemp = "For full window mapping info refer to " + mapInfo + "\n"; - - //print header - int length = outTemp.length(); - char* buf2 = new char[length]; - memcpy(buf2, outTemp.c_str(), length); - - MPI_File_write_shared(outMPI, buf2, length, MPI_CHAR, &status); - delete buf2; - - MPIPos = m->setFilePosFasta(fastaFileNames[s], numSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); MPI_File_close(&outMPIAccnos); m->mothurRemove(outputFileName); m->mothurRemove(accnosFileName); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } - - }else{ //you are a child process - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numSeqs+1); - MPI_Recv(&MPIPos[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); MPI_File_close(&outMPIAccnos); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPI); - MPI_File_close(&outMPIAccnos); - - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - - #else ofstream outHeader; string tempHeader = outputDir + m->getRootName(m->getSimpleName(fastaFileNames[s])) + maskfile + "ccode.chimeras.tempHeader"; m->openOutputFile(tempHeader, outHeader); @@ -466,7 +376,6 @@ int ChimeraCcodeCommand::execute(){ m->mothurRemove(outputFileName); rename(tempHeader.c_str(), outputFileName.c_str()); - #endif delete chimera; @@ -565,65 +474,6 @@ int ChimeraCcodeCommand::driver(linePair* filePos, string outputFName, string fi exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int ChimeraCcodeCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& outMPI, MPI_File& outAccMPI, vector& MPIPos){ - try { - - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - for(int i=0;icontrol_pressed) { return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - delete buf4; - - Sequence* candidateSeq = new Sequence(iss); m->gobble(iss); - - if (candidateSeq->getName() != "") { //incase there is a commented sequence at the end of a file - - if (candidateSeq->getAligned().length() != templateSeqsLength) { - m->mothurOut(candidateSeq->getName() + " is not the same length as the template sequences. Skipping."); m->mothurOutEndLine(); - }else{ - //find chimeras - chimera->getChimeras(candidateSeq); - - if (m->control_pressed) { delete candidateSeq; return 1; } - - //print results - chimera->print(outMPI, outAccMPI); - } - } - delete candidateSeq; - - //report progress - if((i+1) % 100 == 0){ cout << "Processing sequence: " << (i+1) << endl; m->mothurOutJustToLog("Processing sequence: " + toString(i+1) + "\n"); } - } - //report progress - if(num % 100 != 0){ cout << "Processing sequence: " << num << endl; m->mothurOutJustToLog("Processing sequence: " + toString(num) + "\n"); } - - - return 0; - } - catch(exception& e) { - m->errorOut(e, "ChimeraCcodeCommand", "driverMPI"); - exit(1); - } -} -#endif - /**************************************************************************************************/ int ChimeraCcodeCommand::createProcesses(string outputFileName, string filename, string accnos) { diff --git a/source/commands/chimeraccodecommand.h b/source/commands/chimeraccodecommand.h index 030fdad0..82855348 100644 --- a/source/commands/chimeraccodecommand.h +++ b/source/commands/chimeraccodecommand.h @@ -42,10 +42,6 @@ class ChimeraCcodeCommand : public Command { int driver(linePair*, string, string, string); int createProcesses(string, string, string); - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector&); - #endif bool abort, filter, save; string fastafile, templatefile, outputDir, maskfile; diff --git a/source/commands/chimeracheckcommand.cpp b/source/commands/chimeracheckcommand.cpp index c223d1ff..2c98626a 100644 --- a/source/commands/chimeracheckcommand.cpp +++ b/source/commands/chimeracheckcommand.cpp @@ -45,9 +45,6 @@ string ChimeraCheckCommand::getHelpString(){ helpString += "You may enter multiple fasta files by separating their names with dashes. ie. fasta=abrecovery.fasta-amzon.fasta \n"; helpString += "The reference parameter allows you to enter a reference file containing known non-chimeric sequences, and is required. \n"; helpString += "The processors parameter allows you to specify how many processors you would like to use. The default is 1. \n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "The increment parameter allows you to specify how far you move each window while finding chimeric sequences, default is 10.\n"; helpString += "The ksize parameter allows you to input kmersize, default is 7. \n"; helpString += "The svg parameter allows you to specify whether or not you would like a svg file outputted for each query sequence, default is False.\n"; @@ -363,86 +360,6 @@ int ChimeraCheckCommand::execute(){ string outputFileName = getOutputFileName("chimera", variables); outputNames.push_back(outputFileName); outputTypes["chimera"].push_back(outputFileName); - #ifdef USE_MPI - - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPI; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outFilename[1024]; - strcpy(outFilename, outputFileName.c_str()); - - char inFileName[1024]; - strcpy(inFileName, fastaFileNames[i].c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } - - if (pid == 0) { //you are the root process - MPIPos = m->setFilePosFasta(fastaFileNames[i], numSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int j = 1; j < processors; j++) { - MPI_Send(&numSeqs, 1, MPI_INT, j, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numSeqs+1), MPI_LONG, j, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } - - //wait on chidren - for(int j = 1; j < processors; j++) { - char buf[5]; - MPI_Recv(buf, 5, MPI_CHAR, j, tag, MPI_COMM_WORLD, &status); - } - }else{ //you are a child process - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numSeqs+1); - MPI_Recv(&MPIPos[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } - - //tell parent you are done. - char buf[5]; - strcpy(buf, "done"); - MPI_Send(buf, 5, MPI_CHAR, 0, tag, MPI_COMM_WORLD); - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #else - - //break up file #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -484,7 +401,7 @@ int ChimeraCheckCommand::execute(){ if (m->control_pressed) { for (int j = 0; j < lines.size(); j++) { delete lines[j]; } lines.clear(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; } #endif - #endif + delete chimera; for (int j = 0; j < lines.size(); j++) { delete lines[j]; } lines.clear(); @@ -564,56 +481,6 @@ int ChimeraCheckCommand::driver(linePair* filePos, string outputFName, string fi exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int ChimeraCheckCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& outMPI, vector& MPIPos){ - try { - MPI_File outAccMPI; - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - for(int i=0;icontrol_pressed) { return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - delete buf4; - - Sequence* candidateSeq = new Sequence(iss); m->gobble(iss); - - if (candidateSeq->getName() != "") { //incase there is a commented sequence at the end of a file - //find chimeras - chimera->getChimeras(candidateSeq); - - //print results - chimera->print(outMPI, outAccMPI); - } - delete candidateSeq; - - //report progress - if((i+1) % 100 == 0){ cout << "Processing sequence: " << (i+1) << endl; } - } - //report progress - if(num % 100 != 0){ cout << "Processing sequence: " << num << endl; } - - return 0; - } - catch(exception& e) { - m->errorOut(e, "ChimeraCheckCommand", "driverMPI"); - exit(1); - } -} -#endif - /**************************************************************************************************/ int ChimeraCheckCommand::createProcesses(string outputFileName, string filename) { diff --git a/source/commands/chimeracheckcommand.h b/source/commands/chimeracheckcommand.h index 80187f45..dd7b0aef 100644 --- a/source/commands/chimeracheckcommand.h +++ b/source/commands/chimeracheckcommand.h @@ -43,10 +43,6 @@ class ChimeraCheckCommand : public Command { int driver(linePair*, string, string); int createProcesses(string, string); - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, vector&); - #endif bool abort, svg, save; string fastafile, templatefile, namefile, outputDir; diff --git a/source/commands/chimerapintailcommand.cpp b/source/commands/chimerapintailcommand.cpp index 215950fd..e51f16ed 100644 --- a/source/commands/chimerapintailcommand.cpp +++ b/source/commands/chimerapintailcommand.cpp @@ -50,9 +50,6 @@ string ChimeraPintailCommand::getHelpString(){ helpString += "The filter parameter allows you to specify if you would like to apply a vertical and 50% soft filter. \n"; helpString += "The mask parameter allows you to specify a file containing one sequence you wish to use as a mask for the your sequences, by default no mask is applied. You can apply an ecoli mask by typing, mask=default. \n"; helpString += "The processors parameter allows you to specify how many processors you would like to use. The default is 1. \n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "If the save parameter is set to true the reference sequences will be saved in memory, to clear them later you can use the clear.memory command. Default=f."; helpString += "The window parameter allows you to specify the window size for searching for chimeras, default=300. \n"; helpString += "The increment parameter allows you to specify how far you move each window while finding chimeric sequences, default=25.\n"; @@ -431,80 +428,7 @@ int ChimeraPintailCommand::execute(){ } templateSeqsLength = chimera->getLength(); - #ifdef USE_MPI - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPI; - MPI_File outMPIAccnos; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outFilename[1024]; - strcpy(outFilename, outputFileName.c_str()); - - char outAccnosFilename[1024]; - strcpy(outAccnosFilename, accnosFileName.c_str()); - - char inFileName[1024]; - strcpy(inFileName, fastaFileNames[s].c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI); - MPI_File_open(MPI_COMM_WORLD, outAccnosFilename, outMode, MPI_INFO_NULL, &outMPIAccnos); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&inMPI); MPI_File_close(&outMPI); MPI_File_close(&outMPIAccnos); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } delete chimera; return 0; } - - if (pid == 0) { //you are the root process - MPIPos = m->setFilePosFasta(fastaFileNames[s], numSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - //do your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&inMPI); MPI_File_close(&outMPI); MPI_File_close(&outMPIAccnos); m->mothurRemove(outputFileName); m->mothurRemove(accnosFileName); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } delete chimera; return 0; } - - }else{ //you are a child process - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numSeqs+1); - MPI_Recv(&MPIPos[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - //do your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&inMPI); MPI_File_close(&outMPI); MPI_File_close(&outMPIAccnos); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } delete chimera; return 0; } - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPI); - MPI_File_close(&outMPIAccnos); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #else - //break up file #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) vector positions = m->divideFile(fastaFileNames[s], processors); @@ -556,8 +480,6 @@ int ChimeraPintailCommand::execute(){ if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outputFileName); m->mothurRemove(accnosFileName); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } for (int i = 0; i < lines.size(); i++) { delete lines[i]; } lines.clear(); delete chimera; return 0; } #endif - #endif - delete chimera; for (int i = 0; i < lines.size(); i++) { delete lines[i]; } lines.clear(); @@ -653,64 +575,6 @@ int ChimeraPintailCommand::driver(linePair* filePos, string outputFName, string exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int ChimeraPintailCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& outMPI, MPI_File& outAccMPI, vector& MPIPos){ - try { - - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - for(int i=0;icontrol_pressed) { return 1; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - delete buf4; - - Sequence* candidateSeq = new Sequence(iss); m->gobble(iss); - - if (candidateSeq->getName() != "") { //incase there is a commented sequence at the end of a file - - if (candidateSeq->getAligned().length() != templateSeqsLength) { //chimeracheck does not require seqs to be aligned - m->mothurOut(candidateSeq->getName() + " is not the same length as the template sequences. Skipping."); m->mothurOutEndLine(); - }else{ - //find chimeras - chimera->getChimeras(candidateSeq); - - if (m->control_pressed) { delete candidateSeq; return 1; } - - //print results - chimera->print(outMPI, outAccMPI); - } - } - delete candidateSeq; - - //report progress - if((i+1) % 100 == 0){ cout << "Processing sequence: " << (i+1) << endl; } - } - //report progress - if(num % 100 != 0){ cout << "Processing sequence: " << num << endl; } - - - return 0; - } - catch(exception& e) { - m->errorOut(e, "ChimeraPintailCommand", "driverMPI"); - exit(1); - } -} -#endif - /**************************************************************************************************/ int ChimeraPintailCommand::createProcesses(string outputFileName, string filename, string accnos) { diff --git a/source/commands/chimerapintailcommand.h b/source/commands/chimerapintailcommand.h index b830b742..5a28ff08 100644 --- a/source/commands/chimerapintailcommand.h +++ b/source/commands/chimerapintailcommand.h @@ -44,10 +44,6 @@ class ChimeraPintailCommand : public Command { int driver(linePair*, string, string, string); int createProcesses(string, string, string); - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector&); - #endif bool abort, filter, save; string fastafile, templatefile, consfile, quanfile, maskfile, outputDir, inputDir; diff --git a/source/commands/chimeraslayercommand.cpp b/source/commands/chimeraslayercommand.cpp index eae16a4d..ce341e0e 100644 --- a/source/commands/chimeraslayercommand.cpp +++ b/source/commands/chimeraslayercommand.cpp @@ -70,9 +70,6 @@ string ChimeraSlayerCommand::getHelpString(){ helpString += "You may enter multiple fasta files by separating their names with dashes. ie. fasta=abrecovery.fasta-amazon.fasta \n"; helpString += "The reference parameter allows you to enter a reference file containing known non-chimeric sequences, and is required. You may also set template=self, in this case the abundant sequences will be used as potential parents. \n"; helpString += "The processors parameter allows you to specify how many processors you would like to use. The default is 1. \n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "If the dereplicate parameter is false, then if one group finds the seqeunce to be chimeric, then all groups find it to be chimeric, default=f.\n"; helpString += "The trim parameter allows you to output a new fasta file containing your sequences with the chimeric ones trimmed to include only their longest piece, default=F. \n"; helpString += "The split parameter allows you to check both pieces of non-chimeric sequence for chimeras, thus looking for trimeras and quadmeras. default=F. \n"; @@ -719,9 +716,6 @@ int ChimeraSlayerCommand::execute(){ itFile = fileToPriority.begin(); string thisFastaName = itFile->first; map thisPriority = itFile->second; -#ifdef USE_MPI - MPIExecute(thisFastaName, outputFileName, accnosFileName, trimFastaFileName, thisPriority); -#else //break up file vector positions; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -746,7 +740,7 @@ int ChimeraSlayerCommand::execute(){ else{ numSeqs = createProcesses(outputFileName, thisFastaName, accnosFileName, trimFastaFileName, thisPriority); } if (m->control_pressed) { outputTypes.clear(); if (trim) { m->mothurRemove(trimFastaFileName); } m->mothurRemove(outputFileName); m->mothurRemove(accnosFileName); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } -#endif + }else { //you have provided a groupfile string countFile = ""; if (hasCount) { @@ -754,9 +748,7 @@ int ChimeraSlayerCommand::execute(){ variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(nameFileNames[s])); newCountFile = getOutputFileName("count", variables); } -#ifdef USE_MPI - MPIExecuteGroups(outputFileName, accnosFileName, trimFastaFileName, fileToPriority, fileGroup, newCountFile, countFile); -#else + if (processors == 1) { numSeqs = driverGroups(outputFileName, accnosFileName, trimFastaFileName, fileToPriority, fileGroup, newCountFile); if (hasCount && dups) { @@ -778,14 +770,8 @@ int ChimeraSlayerCommand::execute(){ } else { numSeqs = createProcessesGroups(outputFileName, accnosFileName, trimFastaFileName, fileToPriority, fileGroup, newCountFile, countFile); } //destroys fileToPriority -#endif -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid == 0) { -#endif + if (!dups) { totalChimeras = deconvoluteResults(uniqueNames, outputFileName, accnosFileName, trimFastaFileName); m->mothurOutEndLine(); m->mothurOut(toString(totalChimeras) + " chimera found."); m->mothurOutEndLine(); @@ -811,11 +797,6 @@ int ChimeraSlayerCommand::execute(){ outputNames.push_back(newCountFile); outputTypes["count"].push_back(newCountFile); } } - -#ifdef USE_MPI - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait -#endif } m->mothurOut("It took " + toString(time(NULL) - start) + " secs to check " + toString(numSeqs) + " sequences."); m->mothurOutEndLine(); @@ -854,277 +835,6 @@ int ChimeraSlayerCommand::execute(){ } } //********************************************************************************************************************** -int ChimeraSlayerCommand::MPIExecuteGroups(string outputFileName, string accnosFileName, string trimFastaFileName, map >& fileToPriority, map& fileGroup, string countlist, string countfile){ - try { -#ifdef USE_MPI - int pid; - int tag = 2001; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - //put filenames in a vector, then pass each process a starting and ending point in the vector - //all processes already have the fileToPriority and fileGroup, they just need to know which files to process - map >::iterator itFile; - vector filenames; - for(itFile = fileToPriority.begin(); itFile != fileToPriority.end(); itFile++) { filenames.push_back(itFile->first); } - - int numGroupsPerProcessor = ceil(filenames.size() / (double) processors); - int startIndex = pid * numGroupsPerProcessor; - int endIndex = (pid+1) * numGroupsPerProcessor; - if(pid == (processors - 1)){ endIndex = filenames.size(); } - - vector MPIPos; - - MPI_File outMPI; - MPI_File outMPIAccnos; - MPI_File outMPIFasta; - MPI_File outMPICount; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outFilename[1024]; - strcpy(outFilename, outputFileName.c_str()); - - char outAccnosFilename[1024]; - strcpy(outAccnosFilename, accnosFileName.c_str()); - - char outFastaFilename[1024]; - strcpy(outFastaFilename, trimFastaFileName.c_str()); - - char outCountFilename[1024]; - strcpy(outCountFilename, countlist.c_str()); - - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI); - MPI_File_open(MPI_COMM_WORLD, outAccnosFilename, outMode, MPI_INFO_NULL, &outMPIAccnos); - if (trim) { MPI_File_open(MPI_COMM_WORLD, outFastaFilename, outMode, MPI_INFO_NULL, &outMPIFasta); } - if (hasCount && dups) { MPI_File_open(MPI_COMM_WORLD, outCountFilename, outMode, MPI_INFO_NULL, &outMPICount); } - - if (m->control_pressed) { MPI_File_close(&outMPI); if (trim) { MPI_File_close(&outMPIFasta); } MPI_File_close(&outMPIAccnos); if (hasCount && dups) { MPI_File_close(&outMPICount); } return 0; } - - //print headers - if (pid == 0) { //you are the root process - m->mothurOutEndLine(); - m->mothurOut("Only reporting sequence supported by " + toString(minBS) + "% of bootstrapped results."); - m->mothurOutEndLine(); - - string outTemp = "Name\tLeftParent\tRightParent\tDivQLAQRB\tPerIDQLAQRB\tBootStrapA\tDivQLBQRA\tPerIDQLBQRA\tBootStrapB\tFlag\tLeftWindow\tRightWindow\n"; - - //print header - int length = outTemp.length(); - char* buf2 = new char[length]; - memcpy(buf2, outTemp.c_str(), length); - - MPI_File_write_shared(outMPI, buf2, length, MPI_CHAR, &status); - delete buf2; - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - - for (int i = startIndex; i < endIndex; i++) { - - int start = time(NULL); - int num = 0; - string thisFastaName = filenames[i]; - map thisPriority = fileToPriority[thisFastaName]; - - char inFileName[1024]; - strcpy(inFileName, thisFastaName.c_str()); - MPI_File inMPI; - MPI_File_open(MPI_COMM_SELF, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - - MPIPos = m->setFilePosFasta(thisFastaName, num); //fills MPIPos, returns numSeqs - - cout << endl << "Checking sequences from group: " << fileGroup[thisFastaName] << "." << endl; - - set cnames; - driverMPI(0, num, inMPI, outMPI, outMPIAccnos, outMPIFasta, cnames, MPIPos, thisFastaName, thisPriority, true); - numSeqs += num; - - MPI_File_close(&inMPI); - m->mothurRemove(thisFastaName); - - if (dups) { - if (cnames.size() != 0) { - if (hasCount) { - for (set::iterator it = cnames.begin(); it != cnames.end(); it++) { - string outputString = (*it) + "\t" + fileGroup[thisFastaName] + "\n"; - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - MPI_File_write_shared(outMPICount, buf2, length, MPI_CHAR, &status); - delete buf2; - } - }else { - map >::iterator itGroupNameMap = group2NameMap.find(fileGroup[thisFastaName]); - if (itGroupNameMap != group2NameMap.end()) { - map thisnamemap = itGroupNameMap->second; - map::iterator itN; - for (set::iterator it = cnames.begin(); it != cnames.end(); it++) { - itN = thisnamemap.find(*it); - if (itN != thisnamemap.end()) { - vector tempNames; m->splitAtComma(itN->second, tempNames); - for (int j = 0; j < tempNames.size(); j++) { //write to accnos file - string outputString = tempNames[j] + "\n"; - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - - MPI_File_write_shared(outMPIAccnos, buf2, length, MPI_CHAR, &status); - delete buf2; - } - - }else { m->mothurOut("[ERROR]: parsing cannot find " + *it + ".\n"); m->control_pressed = true; } - } - }else { m->mothurOut("[ERROR]: parsing cannot find " + fileGroup[thisFastaName] + ".\n"); m->control_pressed = true; } - } - - } - } - - cout << endl << "It took " << toString(time(NULL) - start) << " secs to check " + toString(num) + " sequences from group " << fileGroup[thisFastaName] << "." << endl; - } - - if (pid == 0) { - for(int i = 1; i < processors; i++) { - int temp = 0; - MPI_Recv(&temp, 1, MPI_INT, i, 2001, MPI_COMM_WORLD, &status); - numSeqs += temp; - } - }else{ MPI_Send(&numSeqs, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD); } - - MPI_File_close(&outMPI); - MPI_File_close(&outMPIAccnos); - if (trim) { MPI_File_close(&outMPIFasta); } - if (hasCount && dups) { MPI_File_close(&outMPICount); } - - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait -#endif - return 0; - - }catch(exception& e) { - m->errorOut(e, "ChimeraSlayerCommand", "MPIExecuteGroups"); - exit(1); - } -} -//********************************************************************************************************************** -int ChimeraSlayerCommand::MPIExecute(string inputFile, string outputFileName, string accnosFileName, string trimFastaFileName, map& priority){ - try { - -#ifdef USE_MPI - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPI; - MPI_File outMPIAccnos; - MPI_File outMPIFasta; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outFilename[1024]; - strcpy(outFilename, outputFileName.c_str()); - - char outAccnosFilename[1024]; - strcpy(outAccnosFilename, accnosFileName.c_str()); - - char outFastaFilename[1024]; - strcpy(outFastaFilename, trimFastaFileName.c_str()); - - char inFileName[1024]; - strcpy(inFileName, inputFile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI); - MPI_File_open(MPI_COMM_WORLD, outAccnosFilename, outMode, MPI_INFO_NULL, &outMPIAccnos); - if (trim) { MPI_File_open(MPI_COMM_WORLD, outFastaFilename, outMode, MPI_INFO_NULL, &outMPIFasta); } - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); if (trim) { MPI_File_close(&outMPIFasta); } MPI_File_close(&outMPIAccnos); return 0; } - - if (pid == 0) { //you are the root process - m->mothurOutEndLine(); - m->mothurOut("Only reporting sequence supported by " + toString(minBS) + "% of bootstrapped results."); - m->mothurOutEndLine(); - - string outTemp = "Name\tLeftParent\tRightParent\tDivQLAQRB\tPerIDQLAQRB\tBootStrapA\tDivQLBQRA\tPerIDQLBQRA\tBootStrapB\tFlag\tLeftWindow\tRightWindow\n"; - - //print header - int length = outTemp.length(); - char* buf2 = new char[length]; - memcpy(buf2, outTemp.c_str(), length); - - MPI_File_write_shared(outMPI, buf2, length, MPI_CHAR, &status); - delete buf2; - - MPIPos = m->setFilePosFasta(inputFile, numSeqs); //fills MPIPos, returns numSeqs - - if (templatefile != "self") { //if template=self we can only use 1 processor - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - } - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - if (templatefile == "self") { //if template=self we can only use 1 processor - startIndex = 0; - numSeqsPerProcessor = numSeqs; - } - - //do your part - set cnames; - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, outMPIFasta, cnames, MPIPos, inputFile, priority, false); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); if (trim) { MPI_File_close(&outMPIFasta); } MPI_File_close(&outMPIAccnos); return 0; } - - }else{ //you are a child process - if (templatefile != "self") { //if template=self we can only use 1 processor - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numSeqs+1); - MPI_Recv(&MPIPos[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = numSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; } - - //do your part - set cnames; - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, outMPIFasta, cnames, MPIPos, inputFile, priority, false); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); if (trim) { MPI_File_close(&outMPIFasta); } MPI_File_close(&outMPIAccnos); return 0; } - - } - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPI); - MPI_File_close(&outMPIAccnos); - if (trim) { MPI_File_close(&outMPIFasta); } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - - -#endif - return numSeqs; - } - catch(exception& e) { - m->errorOut(e, "ChimeraSlayerCommand", "MPIExecute"); - exit(1); - } -} -//********************************************************************************************************************** int ChimeraSlayerCommand::deconvoluteResults(map& uniqueNames, string outputFileName, string accnosFileName, string trimFileName){ try { map::iterator itUnique; @@ -1910,151 +1620,6 @@ int ChimeraSlayerCommand::driver(linePair filePos, string outputFName, string fi exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int ChimeraSlayerCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& outMPI, MPI_File& outAccMPI, MPI_File& outFastaMPI, set& cnames, vector& MPIPos, string filename, map& priority, bool byGroup){ - try { - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - Chimera* chimera; - if (templatefile != "self") { //you want to run slayer with a reference template - chimera = new ChimeraSlayer(filename, templatefile, trim, search, ksize, match, mismatch, window, divR, minSimilarity, minCoverage, minBS, minSNP, parents, iters, increment, numwanted, realign, blastlocation, rand()); - }else { - chimera = new ChimeraSlayer(filename, templatefile, trim, priority, search, ksize, match, mismatch, window, divR, minSimilarity, minCoverage, minBS, minSNP, parents, iters, increment, numwanted, realign, blastlocation, rand(), byGroup); - } - - if (m->control_pressed) { delete chimera; return 0; } - - if (chimera->getUnaligned()) { delete chimera; m->mothurOut("Your template sequences are different lengths, please correct."); m->mothurOutEndLine(); m->control_pressed = true; return 0; } - templateSeqsLength = chimera->getLength(); - - for(int i=0;icontrol_pressed) { delete chimera; return 1; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - - delete buf4; - - Sequence* candidateSeq = new Sequence(iss); m->gobble(iss); - string candidateAligned = candidateSeq->getAligned(); - - if (candidateSeq->getName() != "") { //incase there is a commented sequence at the end of a file - - if (candidateSeq->getAligned().length() != templateSeqsLength) { - m->mothurOut(candidateSeq->getName() + " is not the same length as the template sequences. Skipping."); m->mothurOutEndLine(); - }else{ - - //find chimeras - chimera->getChimeras(candidateSeq); - - if (m->control_pressed) { delete chimera; delete candidateSeq; return 1; } - - //if you are not chimeric, then check each half - data_results wholeResults = chimera->getResults(); - - //determine if we need to split - bool isChimeric = false; - - if (wholeResults.flag == "yes") { - string chimeraFlag = "no"; - if( (wholeResults.results[0].bsa >= minBS && wholeResults.results[0].divr_qla_qrb >= divR) - || - (wholeResults.results[0].bsb >= minBS && wholeResults.results[0].divr_qlb_qra >= divR) ) { chimeraFlag = "yes"; } - - - if (chimeraFlag == "yes") { - if ((wholeResults.results[0].bsa >= minBS) || (wholeResults.results[0].bsb >= minBS)) { isChimeric = true; } - } - } - - if ((!isChimeric) && trimera) { - //split sequence in half by bases - string leftQuery, rightQuery; - Sequence tempSeq(candidateSeq->getName(), candidateAligned); - divideInHalf(tempSeq, leftQuery, rightQuery); - - //run chimeraSlayer on each piece - Sequence* left = new Sequence(candidateSeq->getName(), leftQuery); - Sequence* right = new Sequence(candidateSeq->getName(), rightQuery); - - //find chimeras - chimera->getChimeras(left); - data_results leftResults = chimera->getResults(); - - chimera->getChimeras(right); - data_results rightResults = chimera->getResults(); - - //if either piece is chimeric then report - bool flag = false; - Sequence trimmed = chimera->print(outMPI, outAccMPI, leftResults, rightResults, flag); - if (flag) { cnames.insert(candidateSeq->getName()); } - - if (trim) { - string outputString = ">" + trimmed.getName() + "\n" + trimmed.getAligned() + "\n"; - - //write to accnos file - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - - MPI_File_write_shared(outFastaMPI, buf2, length, MPI_CHAR, &status); - delete buf2; - } - - delete left; delete right; - - }else { - //print results - Sequence trimmed = chimera->print(outMPI, outAccMPI); - cnames.insert(candidateSeq->getName()); - - if (trim) { - string outputString = ">" + trimmed.getName() + "\n" + trimmed.getAligned() + "\n"; - - //write to accnos file - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - - MPI_File_write_shared(outFastaMPI, buf2, length, MPI_CHAR, &status); - delete buf2; - } - } - - } - } - delete candidateSeq; - - //report progress - if((i+1) % 100 == 0){ cout << "Processing sequence: " << (i+1) << endl; } - } - //report progress - if(num % 100 != 0){ cout << "Processing sequence: " << num << endl; } - - int numNoParents = chimera->getNumNoParents(); - if (numNoParents == num) { cout << "[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors." << endl; } - - delete chimera; - return 0; - } - catch(exception& e) { - m->errorOut(e, "ChimeraSlayerCommand", "driverMPI"); - exit(1); - } -} -#endif - /**************************************************************************************************/ int ChimeraSlayerCommand::createProcesses(string outputFileName, string filename, string accnos, string fasta, map& thisPriority) { diff --git a/source/commands/chimeraslayercommand.h b/source/commands/chimeraslayercommand.h index 571d9daa..fb41f364 100644 --- a/source/commands/chimeraslayercommand.h +++ b/source/commands/chimeraslayercommand.h @@ -50,19 +50,12 @@ class ChimeraSlayerCommand : public Command { int sortFastaFile(vector&, map&, string newFile); string getNamesFile(string&); //int setupChimera(string,); - int MPIExecute(string, string, string, string, map&); - int deconvoluteResults(map&, string, string, string); + int deconvoluteResults(map&, string, string, string); map priority; int setUpForSelfReference(SequenceParser*&, map&, map >&, int); int setUpForSelfReference(SequenceCountParser*&, map&, map >&, int); int driverGroups(string, string, string, map >&, map&, string); int createProcessesGroups(string, string, string, map >&, map&, string, string); - int MPIExecuteGroups(string, string, string, map >&, map&, string, string); - - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, set&, vector&, string, map&, bool); - #endif bool abort, realign, trim, trimera, save, hasName, hasCount, dups; string fastafile, groupfile, templatefile, outputDir, search, namefile, countfile, blastlocation; diff --git a/source/commands/chimerauchimecommand.cpp b/source/commands/chimerauchimecommand.cpp index c7c834bd..317dbb73 100644 --- a/source/commands/chimerauchimecommand.cpp +++ b/source/commands/chimerauchimecommand.cpp @@ -90,9 +90,6 @@ string ChimeraUchimeCommand::getHelpString(){ helpString += "The maxlen parameter is the maximum unaligned sequence length. Defaults 10000. Applies to both query and reference sequences.\n"; helpString += "The ucl parameter - use local-X alignments. Default is global-X or false. On tests so far, global-X is always better; this option is retained because it just might work well on some future type of data.\n"; helpString += "The queryfract parameter - minimum fraction of the query sequence that must be covered by a local-X alignment. Default 0.5. Applies only when ucl is true.\n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "The chimera.uchime command should be in the following format: \n"; helpString += "chimera.uchime(fasta=yourFastaFile, reference=yourTemplate) \n"; helpString += "Example: chimera.uchime(fasta=AD.align, reference=silva.gold.align) \n"; diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 8adf8f44..81a6dc61 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -63,9 +63,6 @@ string ClassifySeqsCommand::getHelpString(){ helpString += "The method parameter allows you to specify classification method to use. Your options are: wang, knn and zap. The default is wang.\n"; helpString += "The ksize parameter allows you to specify the kmer size for finding most similar template to candidate. The default is 8.\n"; helpString += "The processors parameter allows you to specify the number of processors to use. The default is 1.\n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "If the save parameter is set to true the reference sequences will be saved in memory, to clear them later you can use the clear.memory command. Default=f."; helpString += "The match parameter allows you to specify the bonus for having the same base. The default is 1.0.\n"; helpString += "The mistmatch parameter allows you to specify the penalty for having different bases. The default is -1.0.\n"; @@ -669,96 +666,6 @@ int ClassifySeqsCommand::execute(){ int start = time(NULL); int numFastaSeqs = 0; for (int i = 0; i < lines.size(); i++) { delete lines[i]; } lines.clear(); - -#ifdef USE_MPI - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPINewTax; - MPI_File outMPITempTax; - MPI_File outMPIAcc; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outNewTax[1024]; - strcpy(outNewTax, newTaxonomyFile.c_str()); - - char outTempTax[1024]; - strcpy(outTempTax, tempTaxonomyFile.c_str()); - - char outAcc[1024]; - strcpy(outAcc, newaccnosFile.c_str()); - - char inFileName[1024]; - strcpy(inFileName, fastaFileNames[s].c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outNewTax, outMode, MPI_INFO_NULL, &outMPINewTax); - MPI_File_open(MPI_COMM_WORLD, outTempTax, outMode, MPI_INFO_NULL, &outMPITempTax); - MPI_File_open(MPI_COMM_WORLD, outAcc, outMode, MPI_INFO_NULL, &outMPIAcc); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&inMPI); MPI_File_close(&outMPINewTax); MPI_File_close(&outMPIAcc); MPI_File_close(&outMPITempTax); delete classify; return 0; } - - if (pid == 0) { //you are the root process - - MPIPos = m->setFilePosFasta(fastaFileNames[s], numFastaSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numFastaSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numFastaSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to align - numSeqsPerProcessor = numFastaSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numFastaSeqs - pid * numSeqsPerProcessor; } - - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPINewTax, outMPITempTax, outMPIAcc, MPIPos); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&inMPI); MPI_File_close(&outMPINewTax); MPI_File_close(&outMPIAcc); MPI_File_close(&outMPITempTax); for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } - - for (int i = 1; i < processors; i++) { - int done; - MPI_Recv(&done, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - } - }else{ //you are a child process - MPI_Recv(&numFastaSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numFastaSeqs+1); - MPI_Recv(&MPIPos[0], (numFastaSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = numFastaSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numFastaSeqs - pid * numSeqsPerProcessor; } - - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPINewTax, outMPITempTax, outMPIAcc, MPIPos); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&inMPI); MPI_File_close(&outMPINewTax); MPI_File_close(&outMPIAcc); MPI_File_close(&outMPITempTax); delete classify; return 0; } - - int done = 0; - MPI_Send(&done, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPINewTax); - MPI_File_close(&outMPITempTax); - MPI_File_close(&outMPIAcc); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - -#else vector positions; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -785,78 +692,69 @@ int ClassifySeqsCommand::execute(){ }else{ numFastaSeqs = createProcesses(newTaxonomyFile, tempTaxonomyFile, newaccnosFile, fastaFileNames[s]); } -#endif if (!m->isBlank(newaccnosFile)) { m->mothurOutEndLine(); m->mothurOut("[WARNING]: mothur reversed some your sequences for a better classification. If you would like to take a closer look, please check " + newaccnosFile + " for the list of the sequences."); m->mothurOutEndLine(); outputNames.push_back(newaccnosFile); outputTypes["accnos"].push_back(newaccnosFile); }else { m->mothurRemove(newaccnosFile); } - m->mothurOutEndLine(); - m->mothurOut("It took " + toString(time(NULL) - start) + " secs to classify " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine(); - start = time(NULL); - - - - #ifdef USE_MPI - if (pid == 0) { //this part does not need to be paralellized - - if(namefile != "") { m->mothurOut("Reading " + namefileNames[s] + "..."); cout.flush(); MPIReadNamesFile(namefileNames[s]); m->mothurOut(" Done."); m->mothurOutEndLine(); } - #else - //read namefile - if(namefile != "") { - - m->mothurOut("Reading " + namefileNames[s] + "..."); cout.flush(); - nameMap.clear(); //remove old names - m->readNames(namefileNames[s], nameMap); - m->mothurOut(" Done."); m->mothurOutEndLine(); - } - #endif - - string group = ""; - GroupMap* groupMap = NULL; - CountTable* ct = NULL; - PhyloSummary* taxaSum; - if (hasCount) { - ct = new CountTable(); - ct->readTable(countfileNames[s], true, false); - taxaSum = new PhyloSummary(taxonomyFileName, ct, relabund); - taxaSum->summarize(tempTaxonomyFile); - }else { - if (groupfile != "") { group = groupfileNames[s]; groupMap = new GroupMap(group); groupMap->readMap(); } - - taxaSum = new PhyloSummary(taxonomyFileName, groupMap, relabund); + m->mothurOutEndLine(); + m->mothurOut("It took " + toString(time(NULL) - start) + " secs to classify " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine(); + start = time(NULL); + + //read namefile + if(namefile != "") { + + m->mothurOut("Reading " + namefileNames[s] + "..."); cout.flush(); + nameMap.clear(); //remove old names + m->readNames(namefileNames[s], nameMap); + m->mothurOut(" Done."); m->mothurOutEndLine(); + } + + string group = ""; + GroupMap* groupMap = NULL; + CountTable* ct = NULL; + PhyloSummary* taxaSum; + if (hasCount) { + ct = new CountTable(); + ct->readTable(countfileNames[s], true, false); + taxaSum = new PhyloSummary(taxonomyFileName, ct, relabund); + taxaSum->summarize(tempTaxonomyFile); + }else { + if (groupfile != "") { group = groupfileNames[s]; groupMap = new GroupMap(group); groupMap->readMap(); } + + taxaSum = new PhyloSummary(taxonomyFileName, groupMap, relabund); + + if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } + + if (namefile == "") { taxaSum->summarize(tempTaxonomyFile); } + else { + ifstream in; + m->openInputFile(tempTaxonomyFile, in); - if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } + //read in users taxonomy file and add sequences to tree + string name, taxon; - if (namefile == "") { taxaSum->summarize(tempTaxonomyFile); } - else { - ifstream in; - m->openInputFile(tempTaxonomyFile, in); + while(!in.eof()){ + if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } + + in >> name >> taxon; m->gobble(in); - //read in users taxonomy file and add sequences to tree - string name, taxon; + itNames = nameMap.find(name); - while(!in.eof()){ - if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } - - in >> name >> taxon; m->gobble(in); - - itNames = nameMap.find(name); - - if (itNames == nameMap.end()) { - m->mothurOut(name + " is not in your name file please correct."); m->mothurOutEndLine(); exit(1); - }else{ - for (int i = 0; i < itNames->second.size(); i++) { - taxaSum->addSeqToTree(itNames->second[i], taxon); //add it as many times as there are identical seqs - } - itNames->second.clear(); - nameMap.erase(itNames->first); + if (itNames == nameMap.end()) { + m->mothurOut(name + " is not in your name file please correct."); m->mothurOutEndLine(); exit(1); + }else{ + for (int i = 0; i < itNames->second.size(); i++) { + taxaSum->addSeqToTree(itNames->second[i], taxon); //add it as many times as there are identical seqs } + itNames->second.clear(); + nameMap.erase(itNames->first); } - in.close(); } + in.close(); } - m->mothurRemove(tempTaxonomyFile); + } + m->mothurRemove(tempTaxonomyFile); if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } @@ -899,9 +797,6 @@ int ClassifySeqsCommand::execute(){ m->mothurOutEndLine(); m->mothurOut("It took " + toString(time(NULL) - start) + " secs to create the summary file for " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine(); - #ifdef USE_MPI - } - #endif } delete classify; @@ -1220,137 +1115,4 @@ int ClassifySeqsCommand::driver(linePair* filePos, string taxFName, string tempT exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int ClassifySeqsCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& newFile, MPI_File& tempFile, MPI_File& accFile, vector& MPIPos){ - try { - MPI_Status statusNew; - MPI_Status statusTemp; - MPI_Status statusAcc; - MPI_Status status; - - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - string taxonomy; - string outputString; - - for(int i=0;icontrol_pressed) { return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - char* buf4 = new char[length]; - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - delete buf4; - - Sequence* candidateSeq = new Sequence(iss); - - if (candidateSeq->getName() != "") { - taxonomy = classify->getTaxonomy(candidateSeq); - - if (taxonomy == "unknown;") { m->mothurOut("[WARNING]: " + candidateSeq->getName() + " could not be classified. You can use the remove.lineage command with taxon=unknown; to remove such sequences."); m->mothurOutEndLine(); } - - //output confidence scores or not - if (probs) { - outputString = candidateSeq->getName() + "\t" + taxonomy + "\n"; - }else{ - outputString = candidateSeq->getName() + "\t" + classify->getSimpleTax() + "\n"; - } - - int length = outputString.length(); - char* buf2 = new char[length]; - memcpy(buf2, outputString.c_str(), length); - - MPI_File_write_shared(newFile, buf2, length, MPI_CHAR, &statusNew); - delete buf2; - - outputString = candidateSeq->getName() + "\t" + classify->getSimpleTax() + "\n"; - length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(tempFile, buf, length, MPI_CHAR, &statusTemp); - delete buf; - - if (classify->getFlipped()) { - outputString = candidateSeq->getName() + "\n"; - length = outputString.length(); - char* buf3 = new char[length]; - memcpy(buf3, outputString.c_str(), length); - - MPI_File_write_shared(accFile, buf3, length, MPI_CHAR, &statusAcc); - delete buf3; - } - - } - delete candidateSeq; - - if((i+1) % 100 == 0){ cout << "Classifying sequence " << (i+1) << endl; } - } - - if(num % 100 != 0){ cout << "Classifying sequence " << (num) << endl; } - - - return 1; - } - catch(exception& e) { - m->errorOut(e, "ClassifySeqsCommand", "driverMPI"); - exit(1); - } -} - -//********************************************************************************************************************** -int ClassifySeqsCommand::MPIReadNamesFile(string nameFilename){ - try { - - nameMap.clear(); //remove old names - - MPI_File inMPI; - MPI_Offset size; - MPI_Status status; - - //char* inFileName = new char[nameFilename.length()]; - //memcpy(inFileName, nameFilename.c_str(), nameFilename.length()); - - char inFileName[1024]; - strcpy(inFileName, nameFilename.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - MPI_File_get_size(inMPI, &size); - //delete inFileName; - - char* buffer = new char[size]; - MPI_File_read(inMPI, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - delete buffer; - - string firstCol, secondCol; - while(!iss.eof()) { - iss >> firstCol >> secondCol; m->gobble(iss); - - vector temp; - m->splitAtComma(secondCol, temp); - - nameMap[firstCol] = temp; - } - - MPI_File_close(&inMPI); - - return 1; - } - catch(exception& e) { - m->errorOut(e, "ClassifySeqsCommand", "MPIReadNamesFile"); - exit(1); - } -} -#endif /**************************************************************************************************/ diff --git a/source/commands/classifyseqscommand.h b/source/commands/classifyseqscommand.h index 1a3284a5..7b8c8e53 100644 --- a/source/commands/classifyseqscommand.h +++ b/source/commands/classifyseqscommand.h @@ -77,11 +77,6 @@ class ClassifySeqsCommand : public Command { int driver(linePair*, string, string, string, string); int createProcesses(string, string, string, string); string addUnclassifieds(string, int); - - int MPIReadNamesFile(string); - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector&); - #endif }; /**************************************************************************************************/ diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp index cf4d2344..6da95392 100644 --- a/source/commands/clustersplitcommand.cpp +++ b/source/commands/clustersplitcommand.cpp @@ -71,9 +71,6 @@ string ClusterSplitCommand::getHelpString(){ helpString += "The taxlevel parameter allows you to specify the taxonomy level you want to use to split the distance file, default=3, meaning use the first taxon in each list. \n"; helpString += "The large parameter allows you to indicate that your distance matrix is too large to fit in RAM. The default value is false.\n"; helpString += "The classic parameter allows you to indicate that you want to run your files with cluster.classic. It is only valid with splitmethod=fasta. Default=f.\n"; -#ifdef USE_MPI - helpString += "When using MPI, the processors parameter is set to the number of MPI processes running. \n"; -#endif helpString += "The cluster.split command should be in the following format: \n"; helpString += "cluster.split(column=youDistanceFile, name=yourNameFile, method=yourMethod, cutoff=yourCutoff, precision=yourPrecision, splitmethod=yourSplitmethod, taxonomy=yourTaxonomyfile, taxlevel=yourtaxlevel) \n"; helpString += "Example: cluster.split(column=abrecovery.dist, name=abrecovery.names, method=furthest, cutoff=0.10, precision=1000, splitmethod=classify, taxonomy=abrecovery.silva.slv.taxonomy, taxlevel=5) \n"; @@ -400,31 +397,11 @@ int ClusterSplitCommand::execute(){ string singletonName = ""; double saveCutoff = cutoff; - -#ifdef USE_MPI - int pid; - int tag = 2001; - MPI_Status status; - MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - -#endif if (file != "") { deleteFiles = false; estart = time(NULL); - -#ifdef USE_MPI - if (pid == 0) { //only process 0 converts and splits -#endif - singletonName = readFile(distName); - -#ifdef USE_MPI - - } //only process 0 reads - //make everyone wait - MPI_Barrier(MPI_COMM_WORLD); -#endif + if (isList) { //set list file as new current listfile @@ -445,11 +422,7 @@ int ClusterSplitCommand::execute(){ }else { //****************** file prep work ******************************// -#ifdef USE_MPI - if (pid == 0) { //only process 0 converts and splits - -#endif - + //if user gave a phylip file convert to column file if (format == "phylip") { estart = time(NULL); @@ -486,25 +459,15 @@ int ClusterSplitCommand::execute(){ estart = time(NULL); m->mothurOut("Splitting the file..."); m->mothurOutEndLine(); -#ifdef USE_MPI - } - MPI_Barrier(MPI_COMM_WORLD); -#endif + //split matrix into non-overlapping groups SplitMatrix* split; if (splitmethod == "distance") { split = new SplitMatrix(distfile, namefile, countfile, taxFile, cutoff, splitmethod, large); } else if (splitmethod == "classify") { split = new SplitMatrix(distfile, namefile, countfile, taxFile, taxLevelCutoff, splitmethod, large); } else if (splitmethod == "fasta") { split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir); } else { m->mothurOut("Not a valid splitting method. Valid splitting algorithms are distance, classify or fasta."); m->mothurOutEndLine(); return 0; } -#ifdef USE_MPI - if ((pid == 0) || (splitmethod == "fasta")) { //only process 0 converts and splits - -#endif split->split(); -#ifdef USE_MPI - } - MPI_Barrier(MPI_COMM_WORLD); -#endif + if (m->control_pressed) { delete split; return 0; } singletonName = split->getSingletonNames(); @@ -520,10 +483,7 @@ int ClusterSplitCommand::execute(){ m->mothurOut("It took " + toString(time(NULL) - estart) + " seconds to split the distance file."); m->mothurOutEndLine(); estart = time(NULL); -#ifdef USE_MPI - if (pid == 0) { //only process 0 converts and splits - -#endif + if (!runCluster) { string filename = printFile(singletonName, distName); @@ -532,177 +492,13 @@ int ClusterSplitCommand::execute(){ m->mothurOutEndLine(); m->mothurOut(filename); m->mothurOutEndLine(); for (int i = 0; i < distName.size(); i++) { m->mothurOut(distName[i].begin()->first); m->mothurOutEndLine(); m->mothurOut(distName[i].begin()->second); m->mothurOutEndLine(); } m->mothurOutEndLine(); -#ifdef USE_MPI -#else + return 0; -#endif } deleteFiles = true; -#ifdef USE_MPI - - } - - MPI_Barrier(MPI_COMM_WORLD); - if (!runCluster) { return 0; } -#endif } //****************** break up files between processes and cluster each file set ******************************// - #ifdef USE_MPI - ////you are process 0 from above//// - if (pid == 0) { - vector < vector < map > > dividedNames; //distNames[1] = vector of filenames for process 1... - dividedNames.resize(processors); - - //for each file group figure out which process will complete it - //want to divide the load intelligently so the big files are spread between processes - for (int i = 0; i < distName.size(); i++) { - int processToAssign = (i+1) % processors; - if (processToAssign == 0) { processToAssign = processors; } - - dividedNames[(processToAssign-1)].push_back(distName[i]); - } - - //not lets reverse the order of ever other process, so we balance big files running with little ones - for (int i = 0; i < processors; i++) { - int remainder = ((i+1) % processors); - if (remainder) { reverse(dividedNames[i].begin(), dividedNames[i].end()); } - } - - - //send each child the list of files it needs to process - for(int i = 1; i < processors; i++) { - //send number of file pairs - int num = dividedNames[i].size(); - MPI_Send(&num, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - - for (int j = 0; j < num; j++) { //send filenames to process i - char tempDistFileName[1024]; - strcpy(tempDistFileName, (dividedNames[i][j].begin()->first).c_str()); - int lengthDist = (dividedNames[i][j].begin()->first).length(); - - MPI_Send(&lengthDist, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(tempDistFileName, 1024, MPI_CHAR, i, tag, MPI_COMM_WORLD); - - char tempNameFileName[1024]; - strcpy(tempNameFileName, (dividedNames[i][j].begin()->second).c_str()); - int lengthName = (dividedNames[i][j].begin()->second).length(); - - MPI_Send(&lengthName, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(tempNameFileName, 1024, MPI_CHAR, i, tag, MPI_COMM_WORLD); - } - } - - //process your share - listFileNames = cluster(dividedNames[0], labels); - - //receive the other processes info - for(int i = 1; i < processors; i++) { - int num = dividedNames[i].size(); - - double tempCutoff; - MPI_Recv(&tempCutoff, 1, MPI_DOUBLE, i, tag, MPI_COMM_WORLD, &status); - if (tempCutoff < cutoff) { cutoff = tempCutoff; } - - //send list filenames to root process - for (int j = 0; j < num; j++) { - int lengthList = 0; - char tempListFileName[1024]; - - MPI_Recv(&lengthList, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - MPI_Recv(tempListFileName, 1024, MPI_CHAR, i, tag, MPI_COMM_WORLD, &status); - - string myListFileName = tempListFileName; - myListFileName = myListFileName.substr(0, lengthList); - - listFileNames.push_back(myListFileName); - } - - //send Labels to root process - int numLabels = 0; - MPI_Recv(&numLabels, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - - for (int j = 0; j < numLabels; j++) { - int lengthLabel = 0; - char tempLabel[100]; - - MPI_Recv(&lengthLabel, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - MPI_Recv(tempLabel, 100, MPI_CHAR, i, tag, MPI_COMM_WORLD, &status); - - string myLabel = tempLabel; - myLabel = myLabel.substr(0, lengthLabel); - - if (labels.count(myLabel) == 0) { labels.insert(myLabel); } - } - } - - }else { //you are a child process - vector < map > myNames; - - //recieve the files you need to process - //receive number of file pairs - int num = 0; - MPI_Recv(&num, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - - myNames.resize(num); - - for (int j = 0; j < num; j++) { //receive filenames to process - int lengthDist = 0; - char tempDistFileName[1024]; - - MPI_Recv(&lengthDist, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(tempDistFileName, 1024, MPI_CHAR, 0, tag, MPI_COMM_WORLD, &status); - - string myDistFileName = tempDistFileName; - myDistFileName = myDistFileName.substr(0, lengthDist); - - int lengthName = 0; - char tempNameFileName[1024]; - - MPI_Recv(&lengthName, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(tempNameFileName, 1024, MPI_CHAR, 0, tag, MPI_COMM_WORLD, &status); - - string myNameFileName = tempNameFileName; - myNameFileName = myNameFileName.substr(0, lengthName); - - //save file name - myNames[j][myDistFileName] = myNameFileName; - } - - //process them - listFileNames = cluster(myNames, labels); - - //send cutoff - MPI_Send(&cutoff, 1, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD); - - //send list filenames to root process - for (int j = 0; j < num; j++) { - char tempListFileName[1024]; - strcpy(tempListFileName, listFileNames[j].c_str()); - int lengthList = listFileNames[j].length(); - - MPI_Send(&lengthList, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - MPI_Send(tempListFileName, 1024, MPI_CHAR, 0, tag, MPI_COMM_WORLD); - } - - //send Labels to root process - int numLabels = labels.size(); - MPI_Send(&numLabels, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - - for(set::iterator it = labels.begin(); it != labels.end(); ++it) { - char tempLabel[100]; - strcpy(tempLabel, (*it).c_str()); - int lengthLabel = (*it).length(); - - MPI_Send(&lengthLabel, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - MPI_Send(tempLabel, 100, MPI_CHAR, 0, tag, MPI_COMM_WORLD); - } - } - - //make everyone wait - MPI_Barrier(MPI_COMM_WORLD); - - #else ///////////////////// WINDOWS CAN ONLY USE 1 PROCESSORS ACCESS VIOLATION UNRESOLVED /////////////////////// //sanity check if (processors > distName.size()) { processors = distName.size(); } @@ -716,7 +512,7 @@ int ClusterSplitCommand::execute(){ #else listFileNames = cluster(distName, labels); //clusters individual files and returns names of list files #endif - #endif + if (m->control_pressed) { for (int i = 0; i < listFileNames.size(); i++) { m->mothurRemove(listFileNames[i]); } return 0; } if (saveCutoff != cutoff) { m->mothurOut("Cutoff was " + toString(saveCutoff) + " changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); } @@ -726,10 +522,6 @@ int ClusterSplitCommand::execute(){ //****************** merge list file and create rabund and sabund files ******************************// estart = time(NULL); m->mothurOut("Merging the clustered files..."); m->mothurOutEndLine(); - - #ifdef USE_MPI - if (pid == 0) { //only process 0 merges - #endif ListVector* listSingle; map labelBins = completeListFile(listFileNames, singletonName, labels, listSingle); //returns map of label to numBins @@ -768,13 +560,6 @@ int ClusterSplitCommand::execute(){ m->mothurOut("Output File Names: "); m->mothurOutEndLine(); for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } m->mothurOutEndLine(); - - #ifdef USE_MPI - } //only process 0 merges - - //make everyone wait - MPI_Barrier(MPI_COMM_WORLD); - #endif return 0; } @@ -1298,16 +1083,6 @@ string ClusterSplitCommand::clusterClassicFile(string thisDistFile, string thisN ListVector* list = NULL; ListVector oldList; RAbundVector* rabund = NULL; - -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - //output your files too - if (pid != 0) { - cout << endl << "Reading " << thisDistFile << endl; - } -#endif m->mothurOutEndLine(); m->mothurOut("Reading " + thisDistFile); m->mothurOutEndLine(); @@ -1344,13 +1119,6 @@ string ClusterSplitCommand::clusterClassicFile(string thisDistFile, string thisN float previousDist = 0.00000; float rndPreviousDist = 0.00000; oldList = *list; - -#ifdef USE_MPI - //output your files too - if (pid != 0) { - cout << endl << "Clustering " << thisDistFile << endl; - } -#endif m->mothurOutEndLine(); m->mothurOut("Clustering " + thisDistFile); m->mothurOutEndLine(); @@ -1429,16 +1197,6 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile if (m->control_pressed) { return listFileName; } -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - //output your files too - if (pid != 0) { - cout << endl << "Reading " << thisDistFile << endl; - } -#endif - m->mothurOutEndLine(); m->mothurOut("Reading " + thisDistFile); m->mothurOutEndLine(); ReadMatrix* read = new ReadColumnMatrix(thisDistFile); @@ -1469,14 +1227,6 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile delete read; read = NULL; if (namefile != "") { delete nameMap; nameMap = NULL; } - -#ifdef USE_MPI - //output your files too - if (pid != 0) { - cout << endl << "Clustering " << thisDistFile << endl; - } -#endif - m->mothurOutEndLine(); m->mothurOut("Clustering " + thisDistFile); m->mothurOutEndLine(); //create cluster @@ -1586,13 +1336,6 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile int ClusterSplitCommand::createMergedDistanceFile(vector< map > distNames) { try{ -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - if (pid != 0) { -#endif - string thisOutputDir = outputDir; if (outputDir == "") { thisOutputDir = m->hasPath(fastafile); } map variables; @@ -1611,10 +1354,6 @@ int ClusterSplitCommand::createMergedDistanceFile(vector< map > outputTypes["column"].push_back(outputFileName); outputNames.push_back(outputFileName); -#ifdef USE_MPI - } -#endif - return 0; diff --git a/source/commands/distancecommand.cpp b/source/commands/distancecommand.cpp index 4181c9e9..67dca9b5 100644 --- a/source/commands/distancecommand.cpp +++ b/source/commands/distancecommand.cpp @@ -271,140 +271,7 @@ int DistanceCommand::execute(){ m->mothurRemove(outputFile); outputTypes["phylip"].push_back(outputFile); } - - -#ifdef USE_MPI - - int pid, start, end; - int tag = 2001; - - MPI_Status status; - MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - //each process gets where it should start and stop in the file - if (output != "square") { - start = int (sqrt(float(pid)/float(processors)) * numSeqs); - end = int (sqrt(float(pid+1)/float(processors)) * numSeqs); - }else{ - start = int ((float(pid)/float(processors)) * numSeqs); - end = int ((float(pid+1)/float(processors)) * numSeqs); - } - - if (output == "column") { - MPI_File outMPI; - int amode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - //char* filename = new char[outputFile.length()]; - //memcpy(filename, outputFile.c_str(), outputFile.length()); - - char filename[1024]; - strcpy(filename, outputFile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, filename, amode, MPI_INFO_NULL, &outMPI); - //delete filename; - if (pid == 0) { //you are the root process - - //do your part - string outputMyPart; - - driverMPI(start, end, outMPI, cutoff); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); return 0; } - - //wait on chidren - for(int i = 1; i < processors; i++) { - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); return 0; } - - char buf[5]; - MPI_Recv(buf, 5, MPI_CHAR, i, tag, MPI_COMM_WORLD, &status); - } - }else { //you are a child process - //do your part - driverMPI(start, end, outMPI, cutoff); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); return 0; } - - char buf[5]; - strcpy(buf, "done"); - //tell parent you are done. - MPI_Send(buf, 5, MPI_CHAR, 0, tag, MPI_COMM_WORLD); - } - - MPI_File_close(&outMPI); - - }else { //lower triangle format - if (pid == 0) { //you are the root process - - //do your part - string outputMyPart; - unsigned long long mySize; - - if (output != "square"){ driverMPI(start, end, outputFile, mySize); } - else { driverMPI(start, end, outputFile, mySize, output); } - - if (m->control_pressed) { outputTypes.clear(); return 0; } - - int amode=MPI_MODE_APPEND|MPI_MODE_WRONLY|MPI_MODE_CREATE; // - MPI_File outMPI; - MPI_File inMPI; - - //char* filename = new char[outputFile.length()]; - //memcpy(filename, outputFile.c_str(), outputFile.length()); - - char filename[1024]; - strcpy(filename, outputFile.c_str()); - - MPI_File_open(MPI_COMM_SELF, filename, amode, MPI_INFO_NULL, &outMPI); - //delete filename; - - //wait on chidren - for(int b = 1; b < processors; b++) { - unsigned long long fileSize; - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); return 0; } - - MPI_Recv(&fileSize, 1, MPI_LONG, b, tag, MPI_COMM_WORLD, &status); - - string outTemp = outputFile + toString(b) + ".temp"; - - char* buf = new char[outTemp.length()]; - memcpy(buf, outTemp.c_str(), outTemp.length()); - - MPI_File_open(MPI_COMM_SELF, buf, MPI_MODE_DELETE_ON_CLOSE|MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - delete buf; - - int count = 0; - while (count < fileSize) { - char buf2[1]; - MPI_File_read(inMPI, buf2, 1, MPI_CHAR, &status); - MPI_File_write(outMPI, buf2, 1, MPI_CHAR, &status); - count += 1; - } - - MPI_File_close(&inMPI); //deleted on close - } - - MPI_File_close(&outMPI); - }else { //you are a child process - //do your part - unsigned long long size; - if (output != "square"){ driverMPI(start, end, (outputFile + toString(pid) + ".temp"), size); } - else { driverMPI(start, end, (outputFile + toString(pid) + ".temp"), size, output); } - - if (m->control_pressed) { return 0; } - - //tell parent you are done. - MPI_Send(&size, 1, MPI_LONG, 0, tag, MPI_COMM_WORLD); - } - } - - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - -#else - - //#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) //if you don't need to fork anything if(processors == 1){ if (output != "square") { driver(0, numSeqs, outputFile, cutoff); } @@ -412,23 +279,9 @@ int DistanceCommand::execute(){ }else{ //you have multiple processors createProcesses(outputFile, numSeqs); } - //#else - //ifstream inFASTA; - //if (output != "square") { driver(0, numSeqs, outputFile, cutoff); } - //else { driver(0, numSeqs, outputFile, "square"); } - //#endif - -#endif + if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outputFile); return 0; } - #ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - - //if (output == "square") { convertMatrix(outputFile); } - ifstream fileHandle; fileHandle.open(outputFile.c_str()); if(fileHandle) { @@ -456,11 +309,6 @@ int DistanceCommand::execute(){ outputFile = newOutputName; } } - - - #ifdef USE_MPI - } - #endif if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outputFile); return 0; } @@ -816,453 +664,7 @@ int DistanceCommand::driver(int startLine, int endLine, string dFileName, string exit(1); } } -#ifdef USE_MPI -/**************************************************************************************************/ -/////// need to fix to work with calcs and sequencedb -int DistanceCommand::driverMPI(int startLine, int endLine, MPI_File& outMPI, float cutoff){ - try { - - ValidCalculators validCalculator; - Dist* distCalculator; - if (m->isTrue(countends) == true) { - for (int i=0; icontrol_pressed) { delete distCalculator; return 0; } - - //if there was a column file given and we are appending, we don't want to calculate the distances that are already in the column file - //the alignDB contains the new sequences and then the old, so if i an oldsequence and j is an old sequence then break out of this loop - if ((i >= numNewFasta) && (j >= numNewFasta)) { break; } - - distCalculator->calcDist(alignDB.get(i), alignDB.get(j)); - double dist = distCalculator->getDist(); - - if(dist <= cutoff){ - outputString += (alignDB.get(i).getName() + ' ' + alignDB.get(j).getName() + ' ' + toString(dist) + '\n'); - } - } - - if(i % 100 == 0){ - m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n"); - } - - - //send results to parent - int length = outputString.length(); - - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(outMPI, buf, length, MPI_CHAR, &status); - outputString = ""; - delete buf; - - } - - m->mothurOutJustToScreen(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)+"\n"); - delete distCalculator; - return 1; - } - catch(exception& e) { - m->errorOut(e, "DistanceCommand", "driverMPI"); - exit(1); - } -} /**************************************************************************************************/ -/////// need to fix to work with calcs and sequencedb -int DistanceCommand::driverMPI(int startLine, int endLine, string file, unsigned long long& size){ - try { - ValidCalculators validCalculator; - Dist* distCalculator; - if (m->isTrue(countends) == true) { - for (int i=0; icontrol_pressed) { delete distCalculator; return 0; } - - distCalculator->calcDist(alignDB.get(i), alignDB.get(j)); - double dist = distCalculator->getDist(); - - outputString += "\t" + toString(dist); - } - - outputString += "\n"; - - - if(i % 100 == 0){ - m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n"); } - - - //send results to parent - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write(outMPI, buf, length, MPI_CHAR, &status); - size += outputString.length(); - outputString = ""; - delete buf; - } - - m->mothurOutJustToScreen(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)+"\n"); - - MPI_File_close(&outMPI); - delete distCalculator; - - return 1; - } - catch(exception& e) { - m->errorOut(e, "DistanceCommand", "driverMPI"); - exit(1); - } -} -/**************************************************************************************************/ -/////// need to fix to work with calcs and sequencedb -int DistanceCommand::driverMPI(int startLine, int endLine, string file, unsigned long long& size, string square){ - try { - ValidCalculators validCalculator; - Dist* distCalculator; - if (m->isTrue(countends) == true) { - for (int i=0; icontrol_pressed) { delete distCalculator; return 0; } - - distCalculator->calcDist(alignDB.get(i), alignDB.get(j)); - double dist = distCalculator->getDist(); - - outputString += "\t" + toString(dist); - } - - outputString += "\n"; - - - if(i % 100 == 0){ - m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n"); - } - - - //send results to parent - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write(outMPI, buf, length, MPI_CHAR, &status); - size += outputString.length(); - outputString = ""; - delete buf; - } - - m->mothurOutJustToScreen(toString(endLine-1) + "\t" + toString(time(NULL) - startTime)+"\n"); - - MPI_File_close(&outMPI); - delete distCalculator; - return 1; - } - catch(exception& e) { - m->errorOut(e, "DistanceCommand", "driverMPI"); - exit(1); - } -} -#endif -/************************************************************************************************** -int DistanceCommand::convertMatrix(string outputFile) { - try{ - - //sort file by first column so the distances for each row are together - string outfile = m->getRootName(outputFile) + "sorted.dist.temp"; - - //use the unix sort - #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - string command = "sort -n " + outputFile + " -o " + outfile; - system(command.c_str()); - #else //sort using windows sort - string command = "sort " + outputFile + " /O " + outfile; - system(command.c_str()); - #endif - - - //output to new file distance for each row and save positions in file where new row begins - ifstream in; - m->openInputFile(outfile, in); - - ofstream out; - m->openOutputFile(outputFile, out); - - out.setf(ios::fixed, ios::floatfield); out.setf(ios::showpoint); - - out << alignDB.getNumSeqs() << endl; - - //get first currentRow - string first, currentRow, second; - float dist; - map rowDists; //take advantage of the fact that maps are already sorted by key - map::iterator it; - - in >> first; - currentRow = first; - - rowDists[first] = 0.00; //distance to yourself is 0.0 - - in.seekg(0); - //m->openInputFile(outfile, in); - - while(!in.eof()) { - if (m->control_pressed) { in.close(); m->mothurRemove(outfile); out.close(); return 0; } - - in >> first >> second >> dist; m->gobble(in); - - if (first != currentRow) { - //print out last row - out << currentRow << '\t'; //print name - - //print dists - for (it = rowDists.begin(); it != rowDists.end(); it++) { - out << it->second << '\t'; - } - out << endl; - - //start new row - currentRow = first; - rowDists.clear(); - rowDists[first] = 0.00; - rowDists[second] = dist; - }else{ - rowDists[second] = dist; - } - } - //print out last row - out << currentRow << '\t'; //print name - - //print dists - for (it = rowDists.begin(); it != rowDists.end(); it++) { - out << it->second << '\t'; - } - out << endl; - - in.close(); - out.close(); - - m->mothurRemove(outfile); - - return 1; - - } - catch(exception& e) { - m->errorOut(e, "DistanceCommand", "convertMatrix"); - exit(1); - } -} -************************************************************************************************** -int DistanceCommand::convertToLowerTriangle(string outputFile) { - try{ - - //sort file by first column so the distances for each row are together - string outfile = m->getRootName(outputFile) + "sorted.dist.temp"; - - //use the unix sort - #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - string command = "sort -n " + outputFile + " -o " + outfile; - system(command.c_str()); - #else //sort using windows sort - string command = "sort " + outputFile + " /O " + outfile; - system(command.c_str()); - #endif - - - //output to new file distance for each row and save positions in file where new row begins - ifstream in; - m->openInputFile(outfile, in); - - ofstream out; - m->openOutputFile(outputFile, out); - - out.setf(ios::fixed, ios::floatfield); out.setf(ios::showpoint); - - out << alignDB.getNumSeqs() << endl; - - //get first currentRow - string first, currentRow, second; - float dist; - int i, j; - i = 0; j = 0; - map rowDists; //take advantage of the fact that maps are already sorted by key - map::iterator it; - - in >> first; - currentRow = first; - - rowDists[first] = 0.00; //distance to yourself is 0.0 - - in.seekg(0); - //m->openInputFile(outfile, in); - - while(!in.eof()) { - if (m->control_pressed) { in.close(); m->mothurRemove(outfile); out.close(); return 0; } - - in >> first >> second >> dist; m->gobble(in); - - if (first != currentRow) { - //print out last row - out << currentRow << '\t'; //print name - - //print dists - for (it = rowDists.begin(); it != rowDists.end(); it++) { - if (j >= i) { break; } - out << it->second << '\t'; - j++; - } - out << endl; - - //start new row - currentRow = first; - rowDists.clear(); - rowDists[first] = 0.00; - rowDists[second] = dist; - j = 0; - i++; - }else{ - rowDists[second] = dist; - } - } - //print out last row - out << currentRow << '\t'; //print name - - //print dists - for (it = rowDists.begin(); it != rowDists.end(); it++) { - out << it->second << '\t'; - } - out << endl; - - in.close(); - out.close(); - - m->mothurRemove(outfile); - - return 1; - - } - catch(exception& e) { - m->errorOut(e, "DistanceCommand", "convertToLowerTriangle"); - exit(1); - } -} -**************************************************************************************************/ //its okay if the column file does not contain all the names in the fasta file, since some distance may have been above a cutoff, //but no sequences can be in the column file that are not in oldfasta. also, if a distance is above the cutoff given then remove it. //also check to make sure the 2 files have the same alignment length. diff --git a/source/commands/distancecommand.h b/source/commands/distancecommand.h index c5f0f1ec..8e708d44 100644 --- a/source/commands/distancecommand.h +++ b/source/commands/distancecommand.h @@ -191,14 +191,10 @@ class DistanceCommand : public Command { struct distlinePair { int start; int end; - }; - - //Dist* distCalculator; - SequenceDB alignDB; + SequenceDB alignDB; string countends, output, fastafile, calc, outputDir, oldfastafile, column, compress; - int processors, numNewFasta; float cutoff; vector processIDS; //end line, processid @@ -207,21 +203,10 @@ class DistanceCommand : public Command { bool abort; vector Estimators, outputNames; //holds estimators to be used - //void m->appendFiles(string, string); void createProcesses(string, int); int driver(/*Dist*, SequenceDB, */int, int, string, float); int driver(int, int, string, string); - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, float); - int driverMPI(int, int, string, unsigned long long&); - int driverMPI(int, int, string, unsigned long long&, string); - #endif - - //int convertMatrix(string); bool sanityCheck(); - //int convertToLowerTriangle(string); - }; #endif diff --git a/source/commands/filterseqscommand.cpp b/source/commands/filterseqscommand.cpp index 10635377..52469fc4 100644 --- a/source/commands/filterseqscommand.cpp +++ b/source/commands/filterseqscommand.cpp @@ -284,13 +284,6 @@ int FilterSeqsCommand::execute() { if (m->control_pressed) { outputTypes.clear(); return 0; } - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output the filter - #endif - ofstream outFilter; //prevent giantic file name @@ -303,11 +296,7 @@ int FilterSeqsCommand::execute() { outFilter << filter << endl; outFilter.close(); outputNames.push_back(filterFile); outputTypes["filter"].push_back(filterFile); - - #ifdef USE_MPI - } - #endif - + ////////////run filter///////////////// m->mothurOut("Running Filter... "); m->mothurOutEndLine(); @@ -363,88 +352,6 @@ int FilterSeqsCommand::filterSequences() { map variables; variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(fastafileNames[s])); string filteredFasta = getOutputFileName("fasta", variables); -#ifdef USE_MPI - int pid, numSeqsPerProcessor, num; - int tag = 2001; - vectorMPIPos; - - MPI_Status status; - MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - MPI_File outMPI; - MPI_File inMPI; - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outFilename[1024]; - strcpy(outFilename, filteredFasta.c_str()); - - char inFileName[1024]; - strcpy(inFileName, fastafileNames[s].c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); return 0; } - - if (pid == 0) { //you are the root process - - MPIPos = m->setFilePosFasta(fastafileNames[s], num); //fills MPIPos, returns numSeqs - numSeqs += num; - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&num, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (num+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to do - numSeqsPerProcessor = num / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = num - pid * numSeqsPerProcessor; } - - - //do your part - driverMPIRun(startIndex, numSeqsPerProcessor, inMPI, outMPI, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); return 0; } - - //wait on chidren - for(int i = 1; i < processors; i++) { - char buf[5]; - MPI_Recv(buf, 5, MPI_CHAR, i, tag, MPI_COMM_WORLD, &status); - } - - }else { //you are a child process - MPI_Recv(&num, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(num+1); - numSeqs += num; - MPI_Recv(&MPIPos[0], (num+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = num / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = num - pid * numSeqsPerProcessor; } - - - //align your part - driverMPIRun(startIndex, numSeqsPerProcessor, inMPI, outMPI, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPI); return 0; } - - char buf[5]; - strcpy(buf, "done"); - - //tell parent you are done. - MPI_Send(buf, 5, MPI_CHAR, 0, tag, MPI_COMM_WORLD); - } - - MPI_File_close(&outMPI); - MPI_File_close(&inMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - -#else vector positions; if (savedPositions.size() != 0) { positions = savedPositions[s]; } @@ -498,7 +405,7 @@ int FilterSeqsCommand::filterSequences() { if (m->control_pressed) { return 1; } #endif -#endif + outputNames.push_back(filteredFasta); outputTypes["fasta"].push_back(filteredFasta); } @@ -509,80 +416,6 @@ int FilterSeqsCommand::filterSequences() { exit(1); } } -#ifdef USE_MPI -/**************************************************************************************/ -int FilterSeqsCommand::driverMPIRun(int start, int num, MPI_File& inMPI, MPI_File& outMPI, vector& MPIPos) { - try { - string outputString = ""; - int count = 0; - MPI_Status status; - - for(int i=0;icontrol_pressed) { return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - char* buf4 = new char[length]; - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - delete buf4; - - Sequence seq(iss); m->gobble(iss); - - if (seq.getName() != "") { - string align = seq.getAligned(); - string filterSeq = ""; - - for(int j=0;jerrorOut(e, "FilterSeqsCommand", "driverRunFilter"); - exit(1); - } -} -#endif /**************************************************************************************/ int FilterSeqsCommand::driverRunFilter(string F, string outputFilename, string inputFilename, linePair* filePos) { try { @@ -831,69 +664,6 @@ string FilterSeqsCommand::createFilter() { for (int i = 0; i < lines.size(); i++) { delete lines[i]; } lines.clear(); -#ifdef USE_MPI - int pid, numSeqsPerProcessor, num; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_File inMPI; - MPI_Comm_size(MPI_COMM_WORLD, &processors); - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - //char* tempFileName = new char(fastafileNames[s].length()); - //tempFileName = &(fastafileNames[s][0]); - - char tempFileName[1024]; - strcpy(tempFileName, fastafileNames[s].c_str()); - - MPI_File_open(MPI_COMM_WORLD, tempFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - - if (m->control_pressed) { MPI_File_close(&inMPI); return 0; } - - if (pid == 0) { //you are the root process - MPIPos = m->setFilePosFasta(fastafileNames[s], num); //fills MPIPos, returns numSeqs - numSeqs += num; - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&num, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (num+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to do - numSeqsPerProcessor = num / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = num - pid * numSeqsPerProcessor; } - - - //do your part - MPICreateFilter(startIndex, numSeqsPerProcessor, F, inMPI, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); return 0; } - - }else { //i am the child process - MPI_Recv(&num, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(num+1); - numSeqs += num; - MPI_Recv(&MPIPos[0], (num+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = num / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = num - pid * numSeqsPerProcessor; } - - - //do your part - MPICreateFilter(startIndex, numSeqsPerProcessor, F, inMPI, MPIPos); - - if (m->control_pressed) { MPI_File_close(&inMPI); return 0; } - } - - MPI_File_close(&inMPI); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - -#else vector positions; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -935,93 +705,15 @@ string FilterSeqsCommand::createFilter() { if (!recalced) { savedPositions[s] = positions; } if (m->control_pressed) { return filterString; } -#endif - - } - } - - -#ifdef USE_MPI - int pid; - int Atag = 1; int Ttag = 2; int Ctag = 3; int Gtag = 4; int Gaptag = 5; - MPI_Status status; - - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if(trump != '*' || m->isTrue(vertical) || soft != 0){ - - if (pid == 0) { //only one process should output the filter - - vector temp; temp.resize(alignmentLength+1); - - //get the frequencies from the child processes - for(int i = 1; i < processors; i++) { - - for (int j = 0; j < 5; j++) { - - MPI_Recv(&temp[0], (alignmentLength+1), MPI_INT, i, 2001, MPI_COMM_WORLD, &status); - int receiveTag = temp[temp.size()-1]; //child process added a int to the end to indicate what letter count this is for - - if (receiveTag == Atag) { //you are recieveing the A frequencies - for (int k = 0; k < alignmentLength; k++) { F.a[k] += temp[k]; } - }else if (receiveTag == Ttag) { //you are recieveing the T frequencies - for (int k = 0; k < alignmentLength; k++) { F.t[k] += temp[k]; } - }else if (receiveTag == Ctag) { //you are recieveing the C frequencies - for (int k = 0; k < alignmentLength; k++) { F.c[k] += temp[k]; } - }else if (receiveTag == Gtag) { //you are recieveing the G frequencies - for (int k = 0; k < alignmentLength; k++) { F.g[k] += temp[k]; } - }else if (receiveTag == Gaptag) { //you are recieveing the gap frequencies - for (int k = 0; k < alignmentLength; k++) { F.gap[k] += temp[k]; } - } - } - } - }else{ - //send my fequency counts - F.a.push_back(Atag); - int ierr = MPI_Send(&(F.a[0]), (alignmentLength+1), MPI_INT, 0, 2001, MPI_COMM_WORLD); - F.t.push_back(Ttag); - ierr = MPI_Send (&(F.t[0]), (alignmentLength+1), MPI_INT, 0, 2001, MPI_COMM_WORLD); - F.c.push_back(Ctag); - ierr = MPI_Send(&(F.c[0]), (alignmentLength+1), MPI_INT, 0, 2001, MPI_COMM_WORLD); - F.g.push_back(Gtag); - ierr = MPI_Send(&(F.g[0]), (alignmentLength+1), MPI_INT, 0, 2001, MPI_COMM_WORLD); - F.gap.push_back(Gaptag); - ierr = MPI_Send(&(F.gap[0]), (alignmentLength+1), MPI_INT, 0, 2001, MPI_COMM_WORLD); } - } - - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - - if (pid == 0) { //only one process should output the filter -#endif F.setNumSeqs(numSeqs); if(m->isTrue(vertical) == 1) { F.doVertical(); } if(soft != 0) { F.doSoft(); } filterString = F.getFilter(); - -#ifdef USE_MPI - //send filter string to kids - //for(int i = 1; i < processors; i++) { - // MPI_Send(&filterString[0], alignmentLength, MPI_CHAR, i, 2001, MPI_COMM_WORLD); - //} - MPI_Bcast(&filterString[0], alignmentLength, MPI_CHAR, 0, MPI_COMM_WORLD); - }else{ - //recieve filterString - char* tempBuf = new char[alignmentLength]; - //MPI_Recv(&tempBuf[0], alignmentLength, MPI_CHAR, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Bcast(tempBuf, alignmentLength, MPI_CHAR, 0, MPI_COMM_WORLD); - - filterString = tempBuf; - if (filterString.length() > alignmentLength) { filterString = filterString.substr(0, alignmentLength); } - delete tempBuf; - } - - MPI_Barrier(MPI_COMM_WORLD); -#endif - + return filterString; } catch(exception& e) { @@ -1083,53 +775,6 @@ int FilterSeqsCommand::driverCreateFilter(Filters& F, string filename, linePair* exit(1); } } -#ifdef USE_MPI -/**************************************************************************************/ -int FilterSeqsCommand::MPICreateFilter(int start, int num, Filters& F, MPI_File& inMPI, vector& MPIPos) { - try { - - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - for(int i=0;icontrol_pressed) { return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - delete buf4; - - Sequence seq(iss); - - if (seq.getAligned().length() != alignmentLength) { cout << "Alignment length is " << alignmentLength << " and sequence " << seq.getName() << " has length " << seq.getAligned().length() << ", please correct." << endl; exit(1); } - - if(trump != '*'){ F.doTrump(seq); } - if(m->isTrue(vertical) || soft != 0){ F.getFreqs(seq); } - cout.flush(); - - //report progress - if((i+1) % 100 == 0){ cout << (i+1) << endl; } - } - - //report progress - if((num) % 100 != 0){ cout << num << endl; } - - return 0; - } - catch(exception& e) { - m->errorOut(e, "FilterSeqsCommand", "MPICreateFilter"); - exit(1); - } -} -#endif /**************************************************************************************************/ int FilterSeqsCommand::createProcessesCreateFilter(Filters& F, string filename) { diff --git a/source/commands/filterseqscommand.h b/source/commands/filterseqscommand.h index 79919509..b2967a21 100644 --- a/source/commands/filterseqscommand.h +++ b/source/commands/filterseqscommand.h @@ -56,10 +56,6 @@ class FilterSeqsCommand : public Command { int createProcessesRunFilter(string, string, string); int driverRunFilter(string, string, string, linePair*); int driverCreateFilter(Filters& F, string filename, linePair* line); - #ifdef USE_MPI - int driverMPIRun(int, int, MPI_File&, MPI_File&, vector&); - int MPICreateFilter(int, int, Filters&, MPI_File&, vector&); - #endif }; diff --git a/source/commands/pairwiseseqscommand.cpp b/source/commands/pairwiseseqscommand.cpp index e5a3c59e..bf85337d 100644 --- a/source/commands/pairwiseseqscommand.cpp +++ b/source/commands/pairwiseseqscommand.cpp @@ -304,129 +304,8 @@ int PairwiseSeqsCommand::execute(){ m->mothurRemove(outputFile); outputTypes["phylip"].push_back(outputFile); } - - #ifdef USE_MPI - - int pid, start, end; - int tag = 2001; - - MPI_Status status; - MPI_Comm_size(MPI_COMM_WORLD, &processors); //set processors to the number of mpi processes running - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - //each process gets where it should start and stop in the file - if (output != "square") { - start = int (sqrt(float(pid)/float(processors)) * numSeqs); - end = int (sqrt(float(pid+1)/float(processors)) * numSeqs); - }else{ - start = int ((float(pid)/float(processors)) * numSeqs); - end = int ((float(pid+1)/float(processors)) * numSeqs); - } - - if (output == "column") { - MPI_File outMPI; - int amode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - char filename[1024]; - strcpy(filename, outputFile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, filename, amode, MPI_INFO_NULL, &outMPI); - - if (pid == 0) { //you are the root process - - //do your part - string outputMyPart; - - driverMPI(start, end, outMPI, cutoff); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); m->mothurRemove(outputFile); return 0; } - - //wait on chidren - for(int i = 1; i < processors; i++) { - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); m->mothurRemove(outputFile); return 0; } - - char buf[5]; - MPI_Recv(buf, 5, MPI_CHAR, i, tag, MPI_COMM_WORLD, &status); - } - }else { //you are a child process - //do your part - driverMPI(start, end, outMPI, cutoff); - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); m->mothurRemove(outputFile); return 0; } - - char buf[5]; - strcpy(buf, "done"); - //tell parent you are done. - MPI_Send(buf, 5, MPI_CHAR, 0, tag, MPI_COMM_WORLD); - } - - MPI_File_close(&outMPI); - - }else { //lower triangle format - if (pid == 0) { //you are the root process - - //do your part - string outputMyPart; - unsigned long long mySize; - - if (output != "square"){ driverMPI(start, end, outputFile, mySize); } - else { driverMPI(start, end, outputFile, mySize, output); } + - if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outputFile); return 0; } - - int amode=MPI_MODE_APPEND|MPI_MODE_WRONLY|MPI_MODE_CREATE; // - MPI_File outMPI; - MPI_File inMPI; - - char filename[1024]; - strcpy(filename, outputFile.c_str()); - - MPI_File_open(MPI_COMM_SELF, filename, amode, MPI_INFO_NULL, &outMPI); - - //wait on chidren - for(int b = 1; b < processors; b++) { - unsigned long long fileSize; - - if (m->control_pressed) { outputTypes.clear(); MPI_File_close(&outMPI); m->mothurRemove(outputFile); return 0; } - - MPI_Recv(&fileSize, 1, MPI_LONG, b, tag, MPI_COMM_WORLD, &status); - - string outTemp = outputFile + toString(b) + ".temp"; - - char* buf = new char[outTemp.length()]; - memcpy(buf, outTemp.c_str(), outTemp.length()); - - MPI_File_open(MPI_COMM_SELF, buf, MPI_MODE_DELETE_ON_CLOSE|MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); - delete buf; - - int count = 0; - while (count < fileSize) { - char buf2[1]; - MPI_File_read(inMPI, buf2, 1, MPI_CHAR, &status); - MPI_File_write(outMPI, buf2, 1, MPI_CHAR, &status); - count += 1; - } - - MPI_File_close(&inMPI); //deleted on close - } - - MPI_File_close(&outMPI); - }else { //you are a child process - //do your part - unsigned long long size; - if (output != "square"){ driverMPI(start, end, (outputFile + toString(pid) + ".temp"), size); } - else { driverMPI(start, end, (outputFile + toString(pid) + ".temp"), size, output); } - - if (m->control_pressed) { return 0; } - - //tell parent you are done. - MPI_Send(&size, 1, MPI_LONG, 0, tag, MPI_COMM_WORLD); - } - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #else - - //#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) //if you don't need to fork anything if(processors == 1){ if (output != "square") { driver(0, numSeqs, outputFile, cutoff); } @@ -447,21 +326,9 @@ int PairwiseSeqsCommand::execute(){ createProcesses(outputFile); } - //#else - //ifstream inFASTA; - //if (output != "square") { driver(0, numSeqs, outputFile, cutoff); } - //else { driver(0, numSeqs, outputFile, "square"); } - //#endif - - #endif + if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outputFile); return 0; } - #ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - ifstream fileHandle; fileHandle.open(outputFile.c_str()); if(fileHandle) { @@ -475,12 +342,8 @@ int PairwiseSeqsCommand::execute(){ system(("gzip -v " + outputFile).c_str()); outputNames.push_back(outputFile + ".gz"); }else { outputNames.push_back(outputFile); } - - #ifdef USE_MPI - } - #endif - - m->mothurOut("It took " + toString(time(NULL) - startTime) + " to calculate the distances for " + toString(numSeqs) + " sequences."); m->mothurOutEndLine(); + + m->mothurOut("It took " + toString(time(NULL) - startTime) + " to calculate the distances for " + toString(numSeqs) + " sequences."); m->mothurOutEndLine(); if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outputFile); return 0; } } @@ -851,310 +714,5 @@ int PairwiseSeqsCommand::driver(int startLine, int endLine, string dFileName, st exit(1); } } -#ifdef USE_MPI -/**************************************************************************************************/ -/////// need to fix to work with calcs and sequencedb -int PairwiseSeqsCommand::driverMPI(int startLine, int endLine, MPI_File& outMPI, float cutoff){ - try { - MPI_Status status; - int startTime = time(NULL); - - Alignment* alignment; - if(align == "gotoh") { alignment = new GotohOverlap(gapOpen, gapExtend, match, misMatch, longestBase); } - else if(align == "needleman") { alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); } - else if(align == "blast") { alignment = new BlastAlignment(gapOpen, gapExtend, match, misMatch); } - else if(align == "noalign") { alignment = new NoAlign(); } - else { - m->mothurOut(align + " is not a valid alignment option. I will run the command using needleman."); - m->mothurOutEndLine(); - alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); - } - - ValidCalculators validCalculator; - Dist* distCalculator; - if (countends) { - if (validCalculator.isValidCalculator("distance", Estimators[0]) == true) { - if (Estimators[0] == "nogaps") { distCalculator = new ignoreGaps(); } - else if (Estimators[0] == "eachgap") { distCalculator = new eachGapDist(); } - else if (Estimators[0] == "onegap") { distCalculator = new oneGapDist(); } - } - }else { - if (validCalculator.isValidCalculator("distance", Estimators[0]) == true) { - if (Estimators[0] == "nogaps") { distCalculator = new ignoreGaps(); } - else if (Estimators[0] == "eachgap"){ distCalculator = new eachGapIgnoreTermGapDist(); } - else if (Estimators[0] == "onegap") { distCalculator = new oneGapIgnoreTermGapDist(); } - } - } - - string outputString = ""; - - for(int i=startLine;icontrol_pressed) { delete alignment; delete distCalculator; return 0; } - - if (alignDB.get(i).getUnaligned().length() > alignment->getnRows()) { - alignment->resize(alignDB.get(i).getUnaligned().length()+1); - } - - if (alignDB.get(j).getUnaligned().length() > alignment->getnRows()) { - alignment->resize(alignDB.get(j).getUnaligned().length()+1); - } - - Sequence seqI(alignDB.get(i).getName(), alignDB.get(i).getAligned()); - Sequence seqJ(alignDB.get(j).getName(), alignDB.get(j).getAligned()); - - alignment->align(seqI.getUnaligned(), seqJ.getUnaligned()); - seqI.setAligned(alignment->getSeqAAln()); - seqJ.setAligned(alignment->getSeqBAln()); - - distCalculator->calcDist(seqI, seqJ); - double dist = distCalculator->getDist(); - - if (m->debug) { cout << ("[DEBUG]: " + seqI.getName() + '\t' + alignment->getSeqAAln() + '\n' + seqJ.getName() + alignment->getSeqBAln() + '\n' + "distance = " + toString(dist) + "\n"); } - - if(dist <= cutoff){ - outputString += (alignDB.get(i).getName() + ' ' + alignDB.get(j).getName() + ' ' + toString(dist) + '\n'); - } - } - - if(i % 100 == 0){ - //m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); m->mothurOutEndLine(); - cout << i << '\t' << (time(NULL) - startTime) << endl; - } - - - //send results to parent - int length = outputString.length(); - - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write_shared(outMPI, buf, length, MPI_CHAR, &status); - outputString = ""; - delete buf; - - } - delete alignment; - delete distCalculator; - return 1; - } - catch(exception& e) { - m->errorOut(e, "PairwiseSeqsCommand", "driverMPI"); - exit(1); - } -} -/**************************************************************************************************/ -/////// need to fix to work with calcs and sequencedb -int PairwiseSeqsCommand::driverMPI(int startLine, int endLine, string file, unsigned long long& size){ - try { - MPI_Status status; - - MPI_File outMPI; - int amode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - char filename[1024]; - strcpy(filename, file.c_str()); - - MPI_File_open(MPI_COMM_SELF, filename, amode, MPI_INFO_NULL, &outMPI); - - Alignment* alignment; - if(align == "gotoh") { alignment = new GotohOverlap(gapOpen, gapExtend, match, misMatch, longestBase); } - else if(align == "needleman") { alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); } - else if(align == "blast") { alignment = new BlastAlignment(gapOpen, gapExtend, match, misMatch); } - else if(align == "noalign") { alignment = new NoAlign(); } - else { - m->mothurOut(align + " is not a valid alignment option. I will run the command using needleman."); - m->mothurOutEndLine(); - alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); - } - - ValidCalculators validCalculator; - Dist* distCalculator; - if (countends) { - if (validCalculator.isValidCalculator("distance", Estimators[0]) == true) { - if (Estimators[0] == "nogaps") { distCalculator = new ignoreGaps(); } - else if (Estimators[0] == "eachgap") { distCalculator = new eachGapDist(); } - else if (Estimators[0] == "onegap") { distCalculator = new oneGapDist(); } - } - }else { - if (validCalculator.isValidCalculator("distance", Estimators[0]) == true) { - if (Estimators[0] == "nogaps") { distCalculator = new ignoreGaps(); } - else if (Estimators[0] == "eachgap"){ distCalculator = new eachGapIgnoreTermGapDist(); } - else if (Estimators[0] == "onegap") { distCalculator = new oneGapIgnoreTermGapDist(); } - } - } - - - string outputString = ""; - size = 0; - - if(startLine == 0){ outputString += toString(alignDB.getNumSeqs()) + "\n"; } - - for(int i=startLine;icontrol_pressed) { delete alignment; delete distCalculator; return 0; } - - if (alignDB.get(i).getUnaligned().length() > alignment->getnRows()) { - alignment->resize(alignDB.get(i).getUnaligned().length()+1); - } - - if (alignDB.get(j).getUnaligned().length() > alignment->getnRows()) { - alignment->resize(alignDB.get(j).getUnaligned().length()+1); - } - - Sequence seqI(alignDB.get(i).getName(), alignDB.get(i).getAligned()); - Sequence seqJ(alignDB.get(j).getName(), alignDB.get(j).getAligned()); - - alignment->align(seqI.getUnaligned(), seqJ.getUnaligned()); - seqI.setAligned(alignment->getSeqAAln()); - seqJ.setAligned(alignment->getSeqBAln()); - - distCalculator->calcDist(seqI, seqJ); - double dist = distCalculator->getDist(); - - if (m->debug) { cout << ("[DEBUG]: " + seqI.getName() + '\t' + alignment->getSeqAAln() + '\n' + seqJ.getName() + alignment->getSeqBAln() + '\n' + "distance = " + toString(dist) + "\n"); } - - outputString += + "\t" + toString(dist); - } - - outputString += "\n"; - - //send results to parent - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write(outMPI, buf, length, MPI_CHAR, &status); - size += outputString.length(); - outputString = ""; - delete buf; - } - - MPI_File_close(&outMPI); - delete alignment; - delete distCalculator; - - return 1; - } - catch(exception& e) { - m->errorOut(e, "PairwiseSeqsCommand", "driverMPI"); - exit(1); - } -} -/**************************************************************************************************/ -/////// need to fix to work with calcs and sequencedb -int PairwiseSeqsCommand::driverMPI(int startLine, int endLine, string file, unsigned long long& size, string square){ - try { - MPI_Status status; - - MPI_File outMPI; - int amode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - - char filename[1024]; - strcpy(filename, file.c_str()); - - MPI_File_open(MPI_COMM_SELF, filename, amode, MPI_INFO_NULL, &outMPI); - - Alignment* alignment; - if(align == "gotoh") { alignment = new GotohOverlap(gapOpen, gapExtend, match, misMatch, longestBase); } - else if(align == "needleman") { alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); } - else if(align == "blast") { alignment = new BlastAlignment(gapOpen, gapExtend, match, misMatch); } - else if(align == "noalign") { alignment = new NoAlign(); } - else { - m->mothurOut(align + " is not a valid alignment option. I will run the command using needleman."); - m->mothurOutEndLine(); - alignment = new NeedlemanOverlap(gapOpen, match, misMatch, longestBase); - } - - ValidCalculators validCalculator; - Dist* distCalculator; - if (countends) { - if (validCalculator.isValidCalculator("distance", Estimators[0]) == true) { - if (Estimators[0] == "nogaps") { distCalculator = new ignoreGaps(); } - else if (Estimators[0] == "eachgap") { distCalculator = new eachGapDist(); } - else if (Estimators[0] == "onegap") { distCalculator = new oneGapDist(); } - } - }else { - if (validCalculator.isValidCalculator("distance", Estimators[0]) == true) { - if (Estimators[0] == "nogaps") { distCalculator = new ignoreGaps(); } - else if (Estimators[0] == "eachgap"){ distCalculator = new eachGapIgnoreTermGapDist(); } - else if (Estimators[0] == "onegap") { distCalculator = new oneGapIgnoreTermGapDist(); } - } - } - - string outputString = ""; - size = 0; - - if(startLine == 0){ outputString += toString(alignDB.getNumSeqs()) + "\n"; } - - for(int i=startLine;icontrol_pressed) { delete alignment; return 0; } - - if (alignDB.get(i).getUnaligned().length() > alignment->getnRows()) { - alignment->resize(alignDB.get(i).getUnaligned().length()+1); - } - - if (alignDB.get(j).getUnaligned().length() > alignment->getnRows()) { - alignment->resize(alignDB.get(j).getUnaligned().length()+1); - } - - Sequence seqI(alignDB.get(i).getName(), alignDB.get(i).getAligned()); - Sequence seqJ(alignDB.get(j).getName(), alignDB.get(j).getAligned()); - - alignment->align(seqI.getUnaligned(), seqJ.getUnaligned()); - seqI.setAligned(alignment->getSeqAAln()); - seqJ.setAligned(alignment->getSeqBAln()); - - distCalculator->calcDist(seqI, seqJ); - double dist = distCalculator->getDist(); - - outputString += + "\t" + toString(dist); - - if (m->debug) { cout << ("[DEBUG]: " + seqI.getName() + '\t' + alignment->getSeqAAln() + '\n' + seqJ.getName() + alignment->getSeqBAln() + '\n' + "distance = " + toString(dist) + "\n"); } - } - - outputString += "\n"; - - //send results to parent - int length = outputString.length(); - char* buf = new char[length]; - memcpy(buf, outputString.c_str(), length); - - MPI_File_write(outMPI, buf, length, MPI_CHAR, &status); - size += outputString.length(); - outputString = ""; - delete buf; - } - - MPI_File_close(&outMPI); - - delete alignment; - return 1; - } - catch(exception& e) { - m->errorOut(e, "PairwiseSeqsCommand", "driverMPI"); - exit(1); - } -} -#endif /**************************************************************************************************/ diff --git a/source/commands/pairwiseseqscommand.h b/source/commands/pairwiseseqscommand.h index fad724b7..f64285bc 100644 --- a/source/commands/pairwiseseqscommand.h +++ b/source/commands/pairwiseseqscommand.h @@ -64,12 +64,6 @@ class PairwiseSeqsCommand : public Command { int driver(int, int, string, float); int driver(int, int, string, string); - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, float); - int driverMPI(int, int, string, unsigned long long&); - int driverMPI(int, int, string, unsigned long long&, string); - #endif - string fastaFileName, align, calc, outputDir, output; float match, misMatch, gapOpen, gapExtend, cutoff; int processors, longestBase; diff --git a/source/commands/pipelinepdscommand.cpp b/source/commands/pipelinepdscommand.cpp index 15cf2ec3..ec704007 100644 --- a/source/commands/pipelinepdscommand.cpp +++ b/source/commands/pipelinepdscommand.cpp @@ -239,13 +239,6 @@ int PipelineCommand::execute(){ CommandOptionParser parser(commands[i]); string commandName = parser.getCommandString(); string options = parser.getOptionString(); - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if ((cFactory->MPIEnabled(commandName)) || (pid == 0)) { - #endif //executes valid command Command* command = cFactory->getCommand(commandName, options, "pipe"); @@ -258,10 +251,7 @@ int PipelineCommand::execute(){ vector temp = itMade->second; for (int j = 0; j < temp.size(); j++) { outputNames.push_back(temp[j]); } } - - #ifdef USE_MPI - } - #endif + } }else { runUsersPipeline(); } @@ -438,13 +428,6 @@ int PipelineCommand::runUsersPipeline(){ if (m->control_pressed) { return 0; } - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if ((cFactory->MPIEnabled(commandName)) || (pid == 0)) { - #endif - //executes valid command Command* command = cFactory->getCommand(commandName, options, "pipe"); command->execute(); @@ -503,10 +486,6 @@ int PipelineCommand::runUsersPipeline(){ } } } - - #ifdef USE_MPI - } - #endif } } diff --git a/source/commands/screenseqscommand.cpp b/source/commands/screenseqscommand.cpp index 36ddacee..cfc36493 100644 --- a/source/commands/screenseqscommand.cpp +++ b/source/commands/screenseqscommand.cpp @@ -449,13 +449,6 @@ int ScreenSeqsCommand::execute(){ else { numFastaSeqs = screenReports(badSeqNames); } if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should fix files - #endif if(namefile != "" && groupfile != "") { screenNameGroupFile(badSeqNames); @@ -473,12 +466,8 @@ int ScreenSeqsCommand::execute(){ if(taxonomy != "") { screenTaxonomy(badSeqNames); } if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - - #ifdef USE_MPI - } - #endif - m->mothurOutEndLine(); + m->mothurOutEndLine(); m->mothurOut("Output File Names: "); m->mothurOutEndLine(); for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } m->mothurOutEndLine(); @@ -538,130 +527,11 @@ int ScreenSeqsCommand::runFastaScreening(map& badSeqNames){ outputNames.push_back(goodSeqFile); outputTypes["fasta"].push_back(goodSeqFile); outputNames.push_back(badAccnosFile); outputTypes["accnos"].push_back(badAccnosFile); -#ifdef USE_MPI - int pid, numSeqsPerProcessor; - int tag = 2001; - vector MPIPos; - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - MPI_File inMPI; - MPI_File outMPIGood; - MPI_File outMPIBadAccnos; - - int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; - int inMode=MPI_MODE_RDONLY; - - char outGoodFilename[1024]; - strcpy(outGoodFilename, goodSeqFile.c_str()); - - char outBadAccnosFilename[1024]; - strcpy(outBadAccnosFilename, badAccnosFile.c_str()); - - char inFileName[1024]; - strcpy(inFileName, fastafile.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - MPI_File_open(MPI_COMM_WORLD, outGoodFilename, outMode, MPI_INFO_NULL, &outMPIGood); - MPI_File_open(MPI_COMM_WORLD, outBadAccnosFilename, outMode, MPI_INFO_NULL, &outMPIBadAccnos); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPIGood); MPI_File_close(&outMPIBadAccnos); return 0; } - - if (pid == 0) { //you are the root process - - MPIPos = m->setFilePosFasta(fastafile, numFastaSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numFastaSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&MPIPos[0], (numFastaSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - - //figure out how many sequences you have to align - numSeqsPerProcessor = numFastaSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numFastaSeqs - pid * numSeqsPerProcessor; } - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPIGood, outMPIBadAccnos, MPIPos, badSeqNames); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPIGood); MPI_File_close(&outMPIBadAccnos); return 0; } - - for (int i = 1; i < processors; i++) { - //get bad lists - int badSize; - MPI_Recv(&badSize, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - } - }else{ //you are a child process - MPI_Recv(&numFastaSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPIPos.resize(numFastaSeqs+1); - MPI_Recv(&MPIPos[0], (numFastaSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - - //figure out how many sequences you have to align - numSeqsPerProcessor = numFastaSeqs / processors; - int startIndex = pid * numSeqsPerProcessor; - if(pid == (processors - 1)){ numSeqsPerProcessor = numFastaSeqs - pid * numSeqsPerProcessor; } - - //align your part - driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPIGood, outMPIBadAccnos, MPIPos, badSeqNames); - - if (m->control_pressed) { MPI_File_close(&inMPI); MPI_File_close(&outMPIGood); MPI_File_close(&outMPIBadAccnos); return 0; } - - //send bad list - int badSize = badSeqNames.size(); - MPI_Send(&badSize, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - } - - //close files - MPI_File_close(&inMPI); - MPI_File_close(&outMPIGood); - MPI_File_close(&outMPIBadAccnos); - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - -#else - if(processors == 1){ numFastaSeqs = driver(lines[0], goodSeqFile, badAccnosFile, fastafile, badSeqNames); } + if(processors == 1){ numFastaSeqs = driver(lines[0], goodSeqFile, badAccnosFile, fastafile, badSeqNames); } else{ numFastaSeqs = createProcesses(goodSeqFile, badAccnosFile, fastafile, badSeqNames); } if (m->control_pressed) { m->mothurRemove(goodSeqFile); return numFastaSeqs; } -#endif - -#ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should fix files - - //read accnos file with all names in it, process 0 just has its names - MPI_File inMPIAccnos; - MPI_Offset size; - - char inFileName[1024]; - strcpy(inFileName, badAccnosFile.c_str()); - - MPI_File_open(MPI_COMM_SELF, inFileName, inMode, MPI_INFO_NULL, &inMPIAccnos); //comm, filename, mode, info, filepointer - MPI_File_get_size(inMPIAccnos, &size); - - char* buffer = new char[size]; - MPI_File_read(inMPIAccnos, buffer, size, MPI_CHAR, &status); - - string tempBuf = buffer; - if (tempBuf.length() > size) { tempBuf = tempBuf.substr(0, size); } - istringstream iss (tempBuf,istringstream::in); - - delete buffer; - MPI_File_close(&inMPIAccnos); - - badSeqNames.clear(); - string tempName, trashCode; - while (!iss.eof()) { - iss >> tempName >> trashCode; m->gobble(iss); - badSeqNames[tempName] = trashCode; - } - } -#endif - - + return numFastaSeqs; } @@ -1168,49 +1038,41 @@ int ScreenSeqsCommand::getSummaryReport(){ vector ambigBases; vector longHomoPolymer; -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { -#endif - + //read summary file + ifstream in; + m->openInputFile(summaryfile, in); + m->getline(in); + + string name; + int start, end, length, ambigs, polymer, numReps; + + while (!in.eof()) { - //read summary file - ifstream in; - m->openInputFile(summaryfile, in); - m->getline(in); + if (m->control_pressed) { in.close(); return 0; } - string name; - int start, end, length, ambigs, polymer, numReps; + //seqname start end nbases ambigs polymer numSeqs + in >> name >> start >> end >> length >> ambigs >> polymer >> numReps; m->gobble(in); - while (!in.eof()) { - - if (m->control_pressed) { in.close(); return 0; } - - //seqname start end nbases ambigs polymer numSeqs - in >> name >> start >> end >> length >> ambigs >> polymer >> numReps; m->gobble(in); + int num = 1; + if ((namefile != "") || (countfile !="")) { + //make sure this sequence is in the namefile, else error + map::iterator it = nameMap.find(name); - int num = 1; - if ((namefile != "") || (countfile !="")) { - //make sure this sequence is in the namefile, else error - map::iterator it = nameMap.find(name); - - if (it == nameMap.end()) { m->mothurOut("[ERROR]: " + name + " is not in your namefile, please correct."); m->mothurOutEndLine(); m->control_pressed = true; } - else { num = it->second; } - } - - //for each sequence this sequence represents - for (int i = 0; i < num; i++) { - startPosition.push_back(start); - endPosition.push_back(end); - seqLength.push_back(length); - ambigBases.push_back(ambigs); - longHomoPolymer.push_back(polymer); - } - + if (it == nameMap.end()) { m->mothurOut("[ERROR]: " + name + " is not in your namefile, please correct."); m->mothurOutEndLine(); m->control_pressed = true; } + else { num = it->second; } } - in.close(); + + //for each sequence this sequence represents + for (int i = 0; i < num; i++) { + startPosition.push_back(start); + endPosition.push_back(end); + seqLength.push_back(length); + ambigBases.push_back(ambigs); + longHomoPolymer.push_back(polymer); + } + + } + in.close(); sort(startPosition.begin(), startPosition.end()); sort(endPosition.begin(), endPosition.end()); @@ -1230,33 +1092,6 @@ int ScreenSeqsCommand::getSummaryReport(){ else if (optimize[i] == "maxlength") { maxLength = seqLength[criteriaPercentile]; m->mothurOut("Optimizing maxlength to " + toString(maxLength) + "."); m->mothurOutEndLine(); } } -#ifdef USE_MPI - } - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&startPos, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&endPos, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxAmbig, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxHomoP, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&minLength, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxLength, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - } - }else { - MPI_Recv(&startPos, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&endPos, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxAmbig, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxHomoP, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&minLength, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxLength, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case -#endif return 0; } @@ -1296,17 +1131,11 @@ int ScreenSeqsCommand::optimizeContigs(){ } #endif -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { - driverContigsSummary(olengths, oStarts, oEnds, numMismatches, numNs, contigsLines[0]); -#else + createProcessesContigsSummary(olengths, oStarts, oEnds, numMismatches, numNs, contigsLines); if (m->control_pressed) { return 0; } -#endif + sort(olengths.begin(), olengths.end()); sort(oStarts.begin(), oStarts.end()); sort(oEnds.begin(), oEnds.end()); @@ -1325,31 +1154,6 @@ int ScreenSeqsCommand::optimizeContigs(){ } -#ifdef USE_MPI - } - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&minOverlap, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&oStart, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&oEnd, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&mismatches, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxN, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - } - }else { - MPI_Recv(&minOverlap, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&oStart, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&oEnd, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&mismatches, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxN, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case -#endif return 0; } catch(exception& e) { @@ -1646,51 +1450,24 @@ int ScreenSeqsCommand::optimizeAlign(){ } #endif -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { - driverAlignSummary(sims, scores, inserts, alignLines[0]); -#else - createProcessesAlignSummary(sims, scores, inserts, alignLines); - - if (m->control_pressed) { return 0; } -#endif - sort(sims.begin(), sims.end()); - sort(scores.begin(), scores.end()); - sort(inserts.begin(), inserts.end()); - - //numSeqs is the number of unique seqs, startPosition.size() is the total number of seqs, we want to optimize using all seqs - int criteriaPercentile = int(sims.size() * (criteria / (float) 100)); - - for (int i = 0; i < optimize.size(); i++) { - if (optimize[i] == "minsim") { int mincriteriaPercentile = int(sims.size() * ((100 - criteria) / (float) 100)); minSim = sims[mincriteriaPercentile]; m->mothurOut("Optimizing minsim to " + toString(minSim) + "."); m->mothurOutEndLine();} - else if (optimize[i] == "minscore") { int mincriteriaPercentile = int(scores.size() * ((100 - criteria) / (float) 100)); minScore = scores[mincriteriaPercentile]; m->mothurOut("Optimizing minscore to " + toString(minScore) + "."); m->mothurOutEndLine(); } - else if (optimize[i] == "maxinsert") { maxInsert = inserts[criteriaPercentile]; m->mothurOut("Optimizing maxinsert to " + toString(maxInsert) + "."); m->mothurOutEndLine(); } - } - -#ifdef USE_MPI - } - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - if (pid == 0) { - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&minSim, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&minScore, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxInsert, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - } - }else { - MPI_Recv(&minSim, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&minScore, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxInsert, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case -#endif + createProcessesAlignSummary(sims, scores, inserts, alignLines); + + if (m->control_pressed) { return 0; } + + sort(sims.begin(), sims.end()); + sort(scores.begin(), scores.end()); + sort(inserts.begin(), inserts.end()); + + //numSeqs is the number of unique seqs, startPosition.size() is the total number of seqs, we want to optimize using all seqs + int criteriaPercentile = int(sims.size() * (criteria / (float) 100)); + + for (int i = 0; i < optimize.size(); i++) { + if (optimize[i] == "minsim") { int mincriteriaPercentile = int(sims.size() * ((100 - criteria) / (float) 100)); minSim = sims[mincriteriaPercentile]; m->mothurOut("Optimizing minsim to " + toString(minSim) + "."); m->mothurOutEndLine();} + else if (optimize[i] == "minscore") { int mincriteriaPercentile = int(scores.size() * ((100 - criteria) / (float) 100)); minScore = scores[mincriteriaPercentile]; m->mothurOut("Optimizing minscore to " + toString(minScore) + "."); m->mothurOutEndLine(); } + else if (optimize[i] == "maxinsert") { maxInsert = inserts[criteriaPercentile]; m->mothurOut("Optimizing maxinsert to " + toString(maxInsert) + "."); m->mothurOutEndLine(); } + } + return 0; } catch(exception& e) { @@ -1976,24 +1753,17 @@ int ScreenSeqsCommand::getSummary(vector& positions){ } #endif -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { - linePair tempLine(0, positions[positions.size()-1]); - driverCreateSummary(startPosition, endPosition, seqLength, ambigBases, longHomoPolymer, numNs, fastafile, tempLine); -#else + int numSeqs = 0; - //#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - if(processors == 1){ - numSeqs = driverCreateSummary(startPosition, endPosition, seqLength, ambigBases, longHomoPolymer, numNs, fastafile, lines[0]); - }else{ - numSeqs = createProcessesCreateSummary(startPosition, endPosition, seqLength, ambigBases, longHomoPolymer, numNs, fastafile); - } - - if (m->control_pressed) { return 0; } -#endif + + if(processors == 1){ + numSeqs = driverCreateSummary(startPosition, endPosition, seqLength, ambigBases, longHomoPolymer, numNs, fastafile, lines[0]); + }else{ + numSeqs = createProcessesCreateSummary(startPosition, endPosition, seqLength, ambigBases, longHomoPolymer, numNs, fastafile); + } + + if (m->control_pressed) { return 0; } + sort(startPosition.begin(), startPosition.end()); sort(endPosition.begin(), endPosition.end()); sort(seqLength.begin(), seqLength.end()); @@ -2014,35 +1784,6 @@ int ScreenSeqsCommand::getSummary(vector& positions){ else if (optimize[i] == "maxn") { maxN = numNs[criteriaPercentile]; m->mothurOut("Optimizing maxn to " + toString(maxN) + "."); m->mothurOutEndLine(); } } -#ifdef USE_MPI - } - - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&startPos, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&endPos, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxAmbig, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxHomoP, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&minLength, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxLength, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&maxN, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - } - }else { - MPI_Recv(&startPos, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&endPos, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxAmbig, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxHomoP, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&minLength, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxLength, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - MPI_Recv(&maxN, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case -#endif return 0; } catch(exception& e) { @@ -2633,95 +2374,6 @@ int ScreenSeqsCommand::driver(linePair filePos, string goodFName, string badAccn exit(1); } } -//********************************************************************************************************************** -#ifdef USE_MPI -int ScreenSeqsCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& goodFile, MPI_File& badAccnosFile, vector& MPIPos, map& badSeqNames){ - try { - string outputString = ""; - MPI_Status statusGood; - MPI_Status statusBadAccnos; - MPI_Status status; - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - for(int i=0;icontrol_pressed) { return 0; } - - //read next sequence - int length = MPIPos[start+i+1] - MPIPos[start+i]; - - char* buf4 = new char[length]; - - MPI_File_read_at(inMPI, MPIPos[start+i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; delete buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - istringstream iss (tempBuf,istringstream::in); - - Sequence currSeq(iss); - - //process seq - if (currSeq.getName() != "") { - bool goodSeq = 1; // innocent until proven guilty - string trashCode = ""; - //have the report files found you bad - map::iterator it = badSeqNames.find(currSeq.getName()); - if (it != badSeqNames.end()) { goodSeq = 0; trashCode = it->second; } - - if (summaryfile == "") { //summaryfile includes these so no need to check again - if(startPos != -1 && startPos < currSeq.getStartPos()) { goodSeq = 0; trashCode += "start|"; } - if(endPos != -1 && endPos > currSeq.getEndPos()) { goodSeq = 0; trashCode += "end|";} - if(maxAmbig != -1 && maxAmbig < currSeq.getAmbigBases()) { goodSeq = 0; trashCode += "ambig|";} - if(maxHomoP != -1 && maxHomoP < currSeq.getLongHomoPolymer()) { goodSeq = 0; trashCode += "homop|";} - if(minLength != -1 && minLength > currSeq.getNumBases()) { goodSeq = 0; trashCode += "mothurOutJustToScreen("Processing sequence: " + toString(i)+"\n"); } - } - - return 1; - } - catch(exception& e) { - m->errorOut(e, "ScreenSeqsCommand", "driverMPI"); - exit(1); - } -} -#endif /**************************************************************************************************/ int ScreenSeqsCommand::createProcesses(string goodFileName, string badAccnos, string filename, map& badSeqNames) { diff --git a/source/commands/screenseqscommand.h b/source/commands/screenseqscommand.h index 591c75c8..93459a41 100644 --- a/source/commands/screenseqscommand.h +++ b/source/commands/screenseqscommand.h @@ -60,12 +60,8 @@ class ScreenSeqsCommand : public Command { int createProcessesContigsSummary(vector&, vector&, vector&, vector&, vector&, vector); int driverAlignSummary(vector&, vector&, vector&, linePair); int createProcessesAlignSummary(vector&, vector&, vector&, vector); - - #ifdef USE_MPI - int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector&, map&); - #endif - - bool abort; + + bool abort; string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy, countfile, contigsreport, summaryfile; int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, minOverlap, oStart, oEnd, mismatches, maxN, maxInsert; float minSim, minScore, criteria; diff --git a/source/commands/shhhercommand.cpp b/source/commands/shhhercommand.cpp index e20a309c..44f0e1b2 100644 --- a/source/commands/shhhercommand.cpp +++ b/source/commands/shhhercommand.cpp @@ -97,12 +97,6 @@ ShhherCommand::ShhherCommand(){ ShhherCommand::ShhherCommand(string option) { try { -#ifdef USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &ncpus); - - if(pid == 0){ -#endif abort = false; calledHelp = false; //allow user to run help @@ -363,11 +357,6 @@ ShhherCommand::ShhherCommand(string option) { if (largeSize != 0) { large = true; } else { large = false; } if (largeSize < 0) { m->mothurOut("The value of the large cannot be negative.\n"); } - -#ifdef USE_MPI - if (large) { m->mothurOut("The large parameter is not available with the MPI-Enabled version.\n"); large=false; } -#endif - temp = validParameter.validFile(parameters, "sigma", false);if (temp == "not found") { temp = "60"; } m->mothurConvert(temp, sigma); @@ -388,9 +377,7 @@ ShhherCommand::ShhherCommand(string option) { } -#ifdef USE_MPI - } -#endif + } catch(exception& e) { m->errorOut(e, "ShhherCommand", "ShhherCommand"); @@ -398,405 +385,28 @@ ShhherCommand::ShhherCommand(string option) { } } //********************************************************************************************************************** -#ifdef USE_MPI + int ShhherCommand::execute(){ try { if (abort == true) { if (calledHelp) { return 0; } return 2; } - int tag = 1976; - MPI_Status status; - - if(pid == 0){ - - for(int i=1;imothurOut("\nGetting preliminary data...\n"); - getSingleLookUp(); if (m->control_pressed) { return 0; } - getJointLookUp(); if (m->control_pressed) { return 0; } - - vector flowFileVector; - if(flowFilesFileName != "not found"){ - string fName; - - ifstream flowFilesFile; - m->openInputFile(flowFilesFileName, flowFilesFile); - while(flowFilesFile){ - fName = m->getline(flowFilesFile); - flowFileVector.push_back(fName); - m->gobble(flowFilesFile); - } - } - else{ - flowFileVector.push_back(flowFileName); - } - - int numFiles = flowFileVector.size(); - - for(int i=1;icontrol_pressed) { break; } - - double begClock = clock(); - unsigned long long begTime = time(NULL); - - flowFileName = flowFileVector[i]; - - m->mothurOut("\n>>>>>\tProcessing " + flowFileName + " (file " + toString(i+1) + " of " + toString(numFiles) + ")\t<<<<<\n"); - m->mothurOut("Reading flowgrams...\n"); - getFlowData(); - - if (m->control_pressed) { break; } - - m->mothurOut("Identifying unique flowgrams...\n"); - getUniques(); - - if (m->control_pressed) { break; } - - m->mothurOut("Calculating distances between flowgrams...\n"); - char fileName[1024]; - strcpy(fileName, flowFileName.c_str()); - - for(int i=1;icontrol_pressed) { break; } - - int done; - for(int i=1;iappendFiles((distFileName + ".temp." + toString(i)), distFileName); - m->mothurRemove((distFileName + ".temp." + toString(i))); - } - - string namesFileName = createNamesFile(); - - if (m->control_pressed) { break; } - - m->mothurOut("\nClustering flowgrams...\n"); - string listFileName = cluster(distFileName, namesFileName); - - if (m->control_pressed) { break; } - - - - getOTUData(listFileName); - - m->mothurRemove(distFileName); - m->mothurRemove(namesFileName); - m->mothurRemove(listFileName); - - if (m->control_pressed) { break; } - - initPyroCluster(); - - if (m->control_pressed) { break; } - - - for(int i=1;icontrol_pressed) { break; } - - double maxDelta = 0; - int iter = 0; - - int numOTUsOnCPU = numOTUs / ncpus; - int numSeqsOnCPU = numSeqs / ncpus; - m->mothurOut("\nDenoising flowgrams...\n"); - m->mothurOut("iter\tmaxDelta\tnLL\t\tcycletime\n"); - - while((maxIters == 0 && maxDelta > minDelta) || iter < MIN_ITER || (maxDelta > minDelta && iter < maxIters)){ - - double cycClock = clock(); - unsigned long long cycTime = time(NULL); - fill(); - - if (m->control_pressed) { break; } - - int total = singleTau.size(); - for(int i=1;i tempCentroids(numOTUs, 0); - vector tempChange(numOTUs, 0); - - MPI_Recv(&tempCentroids[0], numOTUs, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&tempChange[0], numOTUs, MPI_SHORT, i, tag, MPI_COMM_WORLD, &status); - - for(int j=otuStart;jcontrol_pressed) { break; } - double nLL = getLikelihood(); if (m->control_pressed) { break; } - checkCentroids(); if (m->control_pressed) { break; } - - for(int i=1;i childSeqIndex(childTotal, 0); - vector childSingleTau(childTotal, 0); - vector childDist(numSeqs * numOTUs, 0); - vector otuIndex(childTotal, 0); - - MPI_Recv(&childSeqIndex[0], childTotal, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&childSingleTau[0], childTotal, MPI_DOUBLE, i, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&childDist[0], numOTUs * numSeqs, MPI_DOUBLE, i, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&otuIndex[0], childTotal, MPI_INT, i, tag, MPI_COMM_WORLD, &status); - - int oldTotal = total; - total += childTotal; - singleTau.resize(total, 0); - seqIndex.resize(total, 0); - seqNumber.resize(total, 0); - - int childIndex = 0; - - for(int j=oldTotal;jmothurOut(toString(iter) + '\t' + toString(maxDelta) + '\t' + toString(nLL) + '\t' + toString(time(NULL) - cycTime) + '\t' + toString((clock() - cycClock)/(double)CLOCKS_PER_SEC) + '\n'); - - if((maxIters == 0 && maxDelta > minDelta) || iter < MIN_ITER || (maxDelta > minDelta && iter < maxIters)){ - int live = 1; - for(int i=1;icontrol_pressed) { break; } - - m->mothurOut("\nFinalizing...\n"); - fill(); - - if (m->control_pressed) { break; } - - setOTUs(); - - vector otuCounts(numOTUs, 0); - for(int i=0;icontrol_pressed) { break; } - - writeQualities(otuCounts); if (m->control_pressed) { break; } - writeSequences(otuCounts); if (m->control_pressed) { break; } - writeNames(otuCounts); if (m->control_pressed) { break; } - writeClusters(otuCounts); if (m->control_pressed) { break; } - writeGroups(); if (m->control_pressed) { break; } - - - m->mothurOut("Total time to process " + toString(flowFileName) + ":\t" + toString(time(NULL) - begTime) + '\t' + toString((clock() - begClock)/(double)CLOCKS_PER_SEC) + '\n'); - } - } - else{ - int abort = 1; - - MPI_Recv(&abort, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - if(abort){ return 0; } - - int numFiles; - MPI_Recv(&numFiles, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - - for(int i=0;icontrol_pressed) { break; } - - //Now into the pyrodist part - bool live = 1; - - char fileName[1024]; - MPI_Recv(&fileName, 1024, MPI_CHAR, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&numUniques, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&numFlowCells, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - - flowDataIntI.resize(numSeqs * numFlowCells); - flowDataPrI.resize(numSeqs * numFlowCells); - mapUniqueToSeq.resize(numSeqs); - mapSeqToUnique.resize(numSeqs); - lengths.resize(numSeqs); - jointLookUp.resize(NUMBINS * NUMBINS); - - MPI_Recv(&flowDataIntI[0], numSeqs * numFlowCells, MPI_SHORT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&flowDataPrI[0], numSeqs * numFlowCells, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&mapUniqueToSeq[0], numSeqs, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&mapSeqToUnique[0], numSeqs, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&lengths[0], numSeqs, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&jointLookUp[0], NUMBINS * NUMBINS, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&cutoff, 1, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - - flowFileName = string(fileName); - int flowDistStart = int(sqrt(float(pid)/float(ncpus)) * numUniques); - int flowDistEnd = int(sqrt(float(pid+1)/float(ncpus)) * numUniques); - - string distanceStringChild = flowDistMPI(flowDistStart, flowDistEnd); - - if (m->control_pressed) { break; } - - int done = 1; - MPI_Send(&done, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - - //Now into the pyronoise part - MPI_Recv(&numOTUs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - - singleLookUp.resize(HOMOPS * NUMBINS); - uniqueFlowgrams.resize(numUniques * numFlowCells); - weight.resize(numOTUs); - centroids.resize(numOTUs); - change.resize(numOTUs); - dist.assign(numOTUs * numSeqs, 0); - nSeqsPerOTU.resize(numOTUs); - cumNumSeqs.resize(numOTUs); - - MPI_Recv(&singleLookUp[0], singleLookUp.size(), MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&uniqueFlowgrams[0], uniqueFlowgrams.size(), MPI_SHORT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&sigma, 1, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - - int startOTU = pid * numOTUs / ncpus; - int endOTU = (pid + 1) * numOTUs / ncpus; - - int startSeq = pid * numSeqs / ncpus; - int endSeq = (pid + 1) * numSeqs /ncpus; - - int total; - - while(live){ - - if (m->control_pressed) { break; } - - MPI_Recv(&total, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - singleTau.assign(total, 0.0000); - seqNumber.assign(total, 0); - seqIndex.assign(total, 0); - - MPI_Recv(&change[0], numOTUs, MPI_SHORT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(¢roids[0], numOTUs, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&singleTau[0], total, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&seqNumber[0], total, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&seqIndex[0], total, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&nSeqsPerOTU[0], total, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&cumNumSeqs[0], numOTUs, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - - calcCentroidsDriver(startOTU, endOTU); - - MPI_Send(¢roids[0], numOTUs, MPI_INT, 0, tag, MPI_COMM_WORLD); - MPI_Send(&change[0], numOTUs, MPI_SHORT, 0, tag, MPI_COMM_WORLD); - - MPI_Recv(¢roids[0], numOTUs, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&weight[0], numOTUs, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD, &status); - MPI_Recv(&change[0], numOTUs, MPI_SHORT, 0, tag, MPI_COMM_WORLD, &status); - - vector otuIndex(total, 0); - calcNewDistancesChildMPI(startSeq, endSeq, otuIndex); - total = otuIndex.size(); - - MPI_Send(&total, 1, MPI_INT, 0, tag, MPI_COMM_WORLD); - MPI_Send(&seqIndex[0], total, MPI_INT, 0, tag, MPI_COMM_WORLD); - MPI_Send(&singleTau[0], total, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD); - MPI_Send(&dist[0], numOTUs * numSeqs, MPI_DOUBLE, 0, tag, MPI_COMM_WORLD); - MPI_Send(&otuIndex[0], total, MPI_INT, 0, tag, MPI_COMM_WORLD); - - MPI_Recv(&live, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - } - } - } - - if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } + getSingleLookUp(); if (m->control_pressed) { return 0; } + getJointLookUp(); if (m->control_pressed) { return 0; } - MPI_Barrier(MPI_COMM_WORLD); - + int numFiles = flowFileVector.size(); + if (numFiles < processors) { processors = numFiles; } + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + if (processors == 1) { driver(flowFileVector, compositeFASTAFileName, compositeNamesFileName); } + else { createProcesses(flowFileVector); } //each processor processes one file +#else + driver(flowFileVector, compositeFASTAFileName, compositeNamesFileName); +#endif + if(compositeFASTAFileName != ""){ outputNames.push_back(compositeFASTAFileName); outputTypes["fasta"].push_back(compositeFASTAFileName); - outputNames.push_back(compositeNamesFileName); outputTypes["name"].push_back(compositeNamesFileName); + outputNames.push_back(compositeNamesFileName); outputTypes["name"].push_back(compositeNamesFileName); } m->mothurOutEndLine(); @@ -805,1192 +415,12 @@ int ShhherCommand::execute(){ m->mothurOutEndLine(); return 0; - } catch(exception& e) { m->errorOut(e, "ShhherCommand", "execute"); exit(1); } } -/**************************************************************************************************/ -string ShhherCommand::createNamesFile(){ - try{ - - vector duplicateNames(numUniques, ""); - for(int i=0;i variables; - variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(flowFileName)); - string nameFileName = getOutputFileName("name",variables); - - ofstream nameFile; - m->openOutputFile(nameFileName, nameFile); - - for(int i=0;icontrol_pressed) { break; } - - // nameFile << seqNameVector[mapUniqueToSeq[i]] << '\t' << duplicateNames[i].substr(0, duplicateNames[i].find_last_of(',')) << endl; - nameFile << mapUniqueToSeq[i] << '\t' << duplicateNames[i].substr(0, duplicateNames[i].find_last_of(',')) << endl; - } - - nameFile.close(); - return nameFileName; - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "createNamesFile"); - exit(1); - } -} -/**************************************************************************************************/ - -string ShhherCommand::flowDistMPI(int startSeq, int stopSeq){ - try{ - ostringstream outStream; - outStream.setf(ios::fixed, ios::floatfield); - outStream.setf(ios::dec, ios::basefield); - outStream.setf(ios::showpoint); - outStream.precision(6); - - int begTime = time(NULL); - double begClock = clock(); - - for(int i=startSeq;icontrol_pressed) { break; } - - for(int j=0;jmothurOutJustToScreen(toString(i) + '\t' + toString(time(NULL) - begTime) + '\t' + toString((clock()-begClock)/CLOCKS_PER_SEC) + '\n'); - } - } - - string fDistFileName = flowFileName.substr(0,flowFileName.find_last_of('.')) + ".shhh.dist"; - if(pid != 0){ fDistFileName += ".temp." + toString(pid); } - - if (m->control_pressed) { return fDistFileName; } - - m->mothurOutJustToScreen(toString(stopSeq) + '\t' + toString(time(NULL) - begTime) + '\t' + toString((clock()-begClock)/CLOCKS_PER_SEC) + '\n'); - - ofstream distFile(fDistFileName.c_str()); - distFile << outStream.str(); - distFile.close(); - - return fDistFileName; - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "flowDistMPI"); - exit(1); - } -} -/**************************************************************************************************/ - -void ShhherCommand::getOTUData(string listFileName){ - try { - - ifstream listFile; - m->openInputFile(listFileName, listFile); - string label; - - listFile >> label >> numOTUs; - - otuData.assign(numSeqs, 0); - cumNumSeqs.assign(numOTUs, 0); - nSeqsPerOTU.assign(numOTUs, 0); - aaP.clear();aaP.resize(numOTUs); - - seqNumber.clear(); - aaI.clear(); - seqIndex.clear(); - - string singleOTU = ""; - - for(int i=0;icontrol_pressed) { break; } - - listFile >> singleOTU; - - istringstream otuString(singleOTU); - - while(otuString){ - - string seqName = ""; - - for(int j=0;j::iterator nmIt = nameMap.find(seqName); - int index = nmIt->second; - - nameMap.erase(nmIt); - - otuData[index] = i; - nSeqsPerOTU[i]++; - aaP[i].push_back(index); - seqName = ""; - } - } - - map::iterator nmIt = nameMap.find(seqName); - - int index = nmIt->second; - nameMap.erase(nmIt); - - otuData[index] = i; - nSeqsPerOTU[i]++; - aaP[i].push_back(index); - - otuString.get(); - } - - sort(aaP[i].begin(), aaP[i].end()); - for(int j=0;jerrorOut(e, "ShhherCommand", "getOTUData"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::initPyroCluster(){ - try{ - if (numOTUs < processors) { processors = 1; } - - if (m->debug) { m->mothurOut("[DEBUG]: numSeqs = " + toString(numSeqs) + " numOTUS = " + toString(numOTUs) + " about to alloc a dist vector with size = " + toString((numSeqs * numOTUs)) + ".\n"); } - - dist.assign(numSeqs * numOTUs, 0); - change.assign(numOTUs, 1); - centroids.assign(numOTUs, -1); - weight.assign(numOTUs, 0); - singleTau.assign(numSeqs, 1.0); - - nSeqsBreaks.assign(processors+1, 0); - nOTUsBreaks.assign(processors+1, 0); - - if (m->debug) { m->mothurOut("[DEBUG]: made it through the memory allocation.\n"); } - - nSeqsBreaks[0] = 0; - for(int i=0;ierrorOut(e, "ShhherCommand", "initPyroCluster"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::fill(){ - try { - int index = 0; - for(int i=0;icontrol_pressed) { break; } - - cumNumSeqs[i] = index; - for(int j=0;jerrorOut(e, "ShhherCommand", "fill"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::getFlowData(){ - try{ - ifstream flowFile; - m->openInputFile(flowFileName, flowFile); - - string seqName; - seqNameVector.clear(); - lengths.clear(); - flowDataIntI.clear(); - nameMap.clear(); - - - int currentNumFlowCells; - - float intensity; - - string numFlowTest; - flowFile >> numFlowTest; - - if (!m->isContainingOnlyDigits(numFlowTest)) { m->mothurOut("[ERROR]: expected a number and got " + numFlowTest + ", quitting. Did you use the flow parameter instead of the file parameter?"); m->mothurOutEndLine(); exit(1); } - else { convert(numFlowTest, numFlowCells); } - - int index = 0;//pcluster - while(!flowFile.eof()){ - - if (m->control_pressed) { break; } - - flowFile >> seqName >> currentNumFlowCells; - lengths.push_back(currentNumFlowCells); - - seqNameVector.push_back(seqName); - nameMap[seqName] = index++;//pcluster - - for(int i=0;i> intensity; - if(intensity > 9.99) { intensity = 9.99; } - int intI = int(100 * intensity + 0.0001); - flowDataIntI.push_back(intI); - } - m->gobble(flowFile); - } - flowFile.close(); - - numSeqs = seqNameVector.size(); - - for(int i=0;icontrol_pressed) { break; } - - int iNumFlowCells = i * numFlowCells; - for(int j=lengths[i];jerrorOut(e, "ShhherCommand", "getFlowData"); - exit(1); - } -} -/**************************************************************************************************/ -void ShhherCommand::calcNewDistancesChildMPI(int startSeq, int stopSeq, vector& otuIndex){ - - try{ - vector newTau(numOTUs,0); - vector norms(numSeqs, 0); - otuIndex.clear(); - seqIndex.clear(); - singleTau.clear(); - - for(int i=startSeq;icontrol_pressed) { break; } - - double offset = 1e8; - int indexOffset = i * numOTUs; - - for(int j=0;j MIN_WEIGHT && change[j] == 1){ - dist[indexOffset + j] = getDistToCentroid(centroids[j], i, lengths[i]); - } - if(weight[j] > MIN_WEIGHT && dist[indexOffset + j] < offset){ - offset = dist[indexOffset + j]; - } - } - - for(int j=0;j MIN_WEIGHT){ - newTau[j] = exp(sigma * (-dist[indexOffset + j] + offset)) * weight[j]; - norms[i] += newTau[j]; - } - else{ - newTau[j] = 0.0; - } - } - - for(int j=0;j MIN_TAU){ - otuIndex.push_back(j); - seqIndex.push_back(i); - singleTau.push_back(newTau[j]); - } - } - - } - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "calcNewDistancesChildMPI"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::calcNewDistancesParent(int startSeq, int stopSeq){ - - try{ - - int total = 0; - vector newTau(numOTUs,0); - vector norms(numSeqs, 0); - nSeqsPerOTU.assign(numOTUs, 0); - - for(int i=startSeq;icontrol_pressed) { break; } - - int indexOffset = i * numOTUs; - - double offset = 1e8; - - for(int j=0;j MIN_WEIGHT && change[j] == 1){ - dist[indexOffset + j] = getDistToCentroid(centroids[j], i, lengths[i]); - } - - if(weight[j] > MIN_WEIGHT && dist[indexOffset + j] < offset){ - offset = dist[indexOffset + j]; - } - } - - for(int j=0;j MIN_WEIGHT){ - newTau[j] = exp(sigma * (-dist[indexOffset + j] + offset)) * weight[j]; - norms[i] += newTau[j]; - } - else{ - newTau[j] = 0.0; - } - } - - for(int j=0;j MIN_TAU){ - - int oldTotal = total; - - total++; - - singleTau.resize(total, 0); - seqNumber.resize(total, 0); - seqIndex.resize(total, 0); - - singleTau[oldTotal] = newTau[j]; - - aaP[j][nSeqsPerOTU[j]] = oldTotal; - aaI[j][nSeqsPerOTU[j]] = i; - nSeqsPerOTU[j]++; - } - } - - } - - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "calcNewDistancesParent"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::setOTUs(){ - - try { - vector bigTauMatrix(numOTUs * numSeqs, 0.0000); - - for(int i=0;icontrol_pressed) { break; } - - for(int j=0;j maxTau){ - maxTau = bigTauMatrix[i * numOTUs + j]; - maxOTU = j; - } - } - - otuData[i] = maxOTU; - } - - nSeqsPerOTU.assign(numOTUs, 0); - - for(int i=0;ierrorOut(e, "ShhherCommand", "setOTUs"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::getUniques(){ - try{ - - - numUniques = 0; - uniqueFlowgrams.assign(numFlowCells * numSeqs, -1); - uniqueCount.assign(numSeqs, 0); // anWeights - uniqueLengths.assign(numSeqs, 0); - mapSeqToUnique.assign(numSeqs, -1); - mapUniqueToSeq.assign(numSeqs, -1); - - vector uniqueFlowDataIntI(numFlowCells * numSeqs, -1); - - for(int i=0;icontrol_pressed) { break; } - - int index = 0; - - vector current(numFlowCells); - for(int j=0;j uniqueLengths[j]) { uniqueLengths[j] = lengths[i]; } - break; - } - index++; - } - - if(index == numUniques){ - uniqueLengths[numUniques] = lengths[i]; - uniqueCount[numUniques] = 1; - mapSeqToUnique[i] = numUniques;//anMap - mapUniqueToSeq[numUniques] = i;//anF - - for(int k=0;kcontrol_pressed) { break; } flowDataPrI[i] = getProbIntensity(flowDataIntI[i]); } - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "getUniques"); - exit(1); - } -} - -/**************************************************************************************************/ - -float ShhherCommand::calcPairwiseDist(int seqA, int seqB){ - try{ - int minLength = lengths[mapSeqToUnique[seqA]]; - if(lengths[seqB] < minLength){ minLength = lengths[mapSeqToUnique[seqB]]; } - - int ANumFlowCells = seqA * numFlowCells; - int BNumFlowCells = seqB * numFlowCells; - - float dist = 0; - - for(int i=0;icontrol_pressed) { break; } - - int flowAIntI = flowDataIntI[ANumFlowCells + i]; - float flowAPrI = flowDataPrI[ANumFlowCells + i]; - - int flowBIntI = flowDataIntI[BNumFlowCells + i]; - float flowBPrI = flowDataPrI[BNumFlowCells + i]; - dist += jointLookUp[flowAIntI * NUMBINS + flowBIntI] - flowAPrI - flowBPrI; - } - - dist /= (float) minLength; - return dist; - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "calcPairwiseDist"); - exit(1); - } -} - -//**********************************************************************************************************************/ - -string ShhherCommand::cluster(string distFileName, string namesFileName){ - try { - - ReadMatrix* read = new ReadColumnMatrix(distFileName); - read->setCutoff(cutoff); - - NameAssignment* clusterNameMap = new NameAssignment(namesFileName); - clusterNameMap->readMap(); - read->read(clusterNameMap); - - ListVector* list = read->getListVector(); - SparseDistanceMatrix* matrix = read->getDMatrix(); - - delete read; - delete clusterNameMap; - - RAbundVector* rabund = new RAbundVector(list->getRAbundVector()); - - float adjust = -1.0; - Cluster* cluster = new CompleteLinkage(rabund, list, matrix, cutoff, "furthest", adjust); - string tag = cluster->getTag(); - - double clusterCutoff = cutoff; - while (matrix->getSmallDist() <= clusterCutoff && matrix->getNNodes() > 0){ - - if (m->control_pressed) { break; } - - cluster->update(clusterCutoff); - } - - list->setLabel(toString(cutoff)); - - string listFileName = flowFileName.substr(0,flowFileName.find_last_of('.')) + ".shhh.list"; - ofstream listFile; - m->openOutputFile(listFileName, listFile); - list->print(listFile); - listFile.close(); - - delete matrix; delete cluster; delete rabund; delete list; - - return listFileName; - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "cluster"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::calcCentroidsDriver(int start, int finish){ - - //this function gets the most likely homopolymer length at a flow position for a group of sequences - //within an otu - - try{ - - for(int i=start;icontrol_pressed) { break; } - - double count = 0; - int position = 0; - int minFlowGram = 100000000; - double minFlowValue = 1e8; - change[i] = 0; //FALSE - - for(int j=0;j 0 && count > MIN_COUNT){ - vector adF(nSeqsPerOTU[i]); - vector anL(nSeqsPerOTU[i]); - - for(int j=0;jerrorOut(e, "ShhherCommand", "calcCentroidsDriver"); - exit(1); - } -} - -/**************************************************************************************************/ - -double ShhherCommand::getDistToCentroid(int cent, int flow, int length){ - try{ - - int flowAValue = cent * numFlowCells; - int flowBValue = flow * numFlowCells; - - double dist = 0; - - for(int i=0;ierrorOut(e, "ShhherCommand", "getDistToCentroid"); - exit(1); - } -} - -/**************************************************************************************************/ - -double ShhherCommand::getNewWeights(){ - try{ - - double maxChange = 0; - - for(int i=0;icontrol_pressed) { break; } - - double difference = weight[i]; - weight[i] = 0; - - for(int j=0;j maxChange){ maxChange = difference; } - } - return maxChange; - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "getNewWeights"); - exit(1); - } -} - - /**************************************************************************************************/ - -double ShhherCommand::getLikelihood(){ - - try{ - - vector P(numSeqs, 0); - int effNumOTUs = 0; - - for(int i=0;i MIN_WEIGHT){ - effNumOTUs++; - } - } - - string hold; - for(int i=0;icontrol_pressed) { break; } - - for(int j=0;jerrorOut(e, "ShhherCommand", "getNewWeights"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::checkCentroids(){ - try{ - vector unique(numOTUs, 1); - - for(int i=0;icontrol_pressed) { break; } - - if(unique[i] == 1){ - for(int j=i+1;jerrorOut(e, "ShhherCommand", "checkCentroids"); - exit(1); - } -} - /**************************************************************************************************/ - - - -void ShhherCommand::writeQualities(vector otuCounts){ - - try { - string thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(flowFileName); } - map variables; - variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(flowFileName)); - string qualityFileName = getOutputFileName("qfile",variables); - - ofstream qualityFile; - m->openOutputFile(qualityFileName, qualityFile); - - qualityFile.setf(ios::fixed, ios::floatfield); - qualityFile.setf(ios::showpoint); - qualityFile << setprecision(6); - - vector > qualities(numOTUs); - vector pr(HOMOPS, 0); - - - for(int i=0;icontrol_pressed) { break; } - - int index = 0; - - if(nSeqsPerOTU[i] > 0){ - - while(index < numFlowCells){ - double maxPrValue = 1e8; - short maxPrIndex = -1; - double count = 0.0000; - - pr.assign(HOMOPS, 0); - - for(int j=0;j MIN_COUNT){ - double U = 0.0000; - double norm = 0.0000; - - for(int s=0;s0.00){ - temp = log10(U); - } - else{ - temp = -10.1; - } - temp = floor(-10 * temp); - value = (int)floor(temp); - if(value > 100){ value = 100; } - - qualities[i].push_back((int)value); - } - } - - index++; - } - } - - - if(otuCounts[i] > 0){ - qualityFile << '>' << seqNameVector[mapUniqueToSeq[i]] << endl; - for (int j = 4; j < qualities[i].size(); j++) { qualityFile << qualities[i][j] << ' '; } - qualityFile << endl; - } - } - qualityFile.close(); - outputNames.push_back(qualityFileName); outputTypes["qfile"].push_back(qualityFileName); - - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "writeQualities"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::writeSequences(vector otuCounts){ - try { - string thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(flowFileName); } - map variables; - variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(flowFileName)); - string fastaFileName = getOutputFileName("fasta",variables); - ofstream fastaFile; - m->openOutputFile(fastaFileName, fastaFile); - - vector names(numOTUs, ""); - - for(int i=0;icontrol_pressed) { break; } - - int index = centroids[i]; - - if(otuCounts[i] > 0){ - fastaFile << '>' << seqNameVector[aaI[i][0]] << endl; - - string newSeq = ""; - - for(int j=0;jappendFiles(fastaFileName, compositeFASTAFileName); - } - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "writeSequences"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::writeNames(vector otuCounts){ - try { - string thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(flowFileName); } - map variables; - variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(flowFileName)); - string nameFileName = getOutputFileName("name",variables); - ofstream nameFile; - m->openOutputFile(nameFileName, nameFile); - - for(int i=0;icontrol_pressed) { break; } - - if(otuCounts[i] > 0){ - nameFile << seqNameVector[aaI[i][0]] << '\t' << seqNameVector[aaI[i][0]]; - - for(int j=1;jappendFiles(nameFileName, compositeNamesFileName); - } - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "writeNames"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::writeGroups(){ - try { - string thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(flowFileName); } - string fileRoot = m->getRootName(m->getSimpleName(flowFileName)); - int pos = fileRoot.find_first_of('.'); - string fileGroup = fileRoot; - if (pos != string::npos) { fileGroup = fileRoot.substr(pos+1, (fileRoot.length()-1-(pos+1))); } - map variables; - variables["[filename]"] = thisOutputDir + fileRoot; - string groupFileName = getOutputFileName("group",variables); - ofstream groupFile; - m->openOutputFile(groupFileName, groupFile); - - for(int i=0;icontrol_pressed) { break; } - groupFile << seqNameVector[i] << '\t' << fileGroup << endl; - } - groupFile.close(); - outputNames.push_back(groupFileName); outputTypes["group"].push_back(groupFileName); - - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "writeGroups"); - exit(1); - } -} - -/**************************************************************************************************/ - -void ShhherCommand::writeClusters(vector otuCounts){ - try { - string thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(flowFileName); } - map variables; - variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(flowFileName)); - string otuCountsFileName = getOutputFileName("counts",variables); - ofstream otuCountsFile; - m->openOutputFile(otuCountsFileName, otuCountsFile); - - string bases = flowOrder; - - for(int i=0;icontrol_pressed) { - break; - } - //output the translated version of the centroid sequence for the otu - if(otuCounts[i] > 0){ - int index = centroids[i]; - - otuCountsFile << "ideal\t"; - for(int j=8;jerrorOut(e, "ShhherCommand", "writeClusters"); - exit(1); - } -} - -#else -//********************************************************************************************************************** - -int ShhherCommand::execute(){ - try { - if (abort == true) { if (calledHelp) { return 0; } return 2; } - - getSingleLookUp(); if (m->control_pressed) { return 0; } - getJointLookUp(); if (m->control_pressed) { return 0; } - - int numFiles = flowFileVector.size(); - - if (numFiles < processors) { processors = numFiles; } - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - if (processors == 1) { driver(flowFileVector, compositeFASTAFileName, compositeNamesFileName); } - else { createProcesses(flowFileVector); } //each processor processes one file -#else - driver(flowFileVector, compositeFASTAFileName, compositeNamesFileName); -#endif - - if(compositeFASTAFileName != ""){ - outputNames.push_back(compositeFASTAFileName); outputTypes["fasta"].push_back(compositeFASTAFileName); - outputNames.push_back(compositeNamesFileName); outputTypes["name"].push_back(compositeNamesFileName); - } - - m->mothurOutEndLine(); - m->mothurOut("Output File Names: "); m->mothurOutEndLine(); - for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } - m->mothurOutEndLine(); - - return 0; - } - catch(exception& e) { - m->errorOut(e, "ShhherCommand", "execute"); - exit(1); - } -} -#endif //******************************************************************************************************************** //sorts biggest to smallest inline bool compareFileSizes(string left, string right){ diff --git a/source/commands/shhhercommand.h b/source/commands/shhhercommand.h index 895ece93..af7614e6 100644 --- a/source/commands/shhhercommand.h +++ b/source/commands/shhhercommand.h @@ -91,1271 +91,9 @@ class ShhherCommand : public Command { void getSingleLookUp(); void getJointLookUp(); double getProbIntensity(int); - - -#ifdef USE_MPI - string flowDistMPI(int, int); - void calcNewDistancesChildMPI(int, int, vector&); - - int pid, ncpus; - - void getFlowData(); - void getUniques(); - - float calcPairwiseDist(int, int); - void flowDistParentFork(string, int, int); - - string createDistFile(int); - string createNamesFile(); - string cluster(string, string); - - void getOTUData(string); - void initPyroCluster(); - void fill(); - void calcCentroids(); - void calcCentroidsDriver(int, int); - double getDistToCentroid(int, int, int); - double getNewWeights(); - double getLikelihood(); - void checkCentroids(); - void calcNewDistances(); - void calcNewDistancesParent(int, int); - void calcNewDistancesChild(int, int, vector&, vector&, vector&); - - - void setOTUs(); - void writeQualities(vector); - void writeSequences(vector); - void writeNames(vector); - void writeGroups(); - void writeClusters(vector); - - vector seqNameVector; - vector lengths; - vector flowDataIntI; - vector flowDataPrI; - map nameMap; - vector otuData; - vector cumNumSeqs; - vector nSeqsPerOTU; - vector > aaP; //tMaster->aanP: each row is a different otu / each col contains the sequence indices - vector > aaI; //tMaster->aanI: that are in each otu - can't differentiate between aaP and aaI - vector seqNumber; //tMaster->anP: the sequence id number sorted by OTU - vector seqIndex; //tMaster->anI; the index that corresponds to seqNumber - vector dist; //adDist - distance of sequences to centroids - vector change; //did the centroid sequence change? 0 = no; 1 = yes - vector centroids; //the representative flowgram for each cluster m - vector weight; - vector singleTau; //tMaster->adTau: 1-D Tau vector (1xnumSeqs) - vector uniqueFlowgrams; - vector uniqueCount; - vector mapSeqToUnique; - vector mapUniqueToSeq; - vector uniqueLengths; - int numSeqs, numUniques, numOTUs, numFlowCells; - vector nSeqsBreaks; - vector nOTUsBreaks; - -#endif - -}; - -/************************************************************************************************** -//custom data structure for threads to use. -// This is passed by void pointer so it can be any data type -// that can be passed using a single void pointer (LPVOID). -struct shhhFlowsData { - int threadID, maxIters; - float cutoff, sigma, minDelta; - string flowOrder; - vector singleLookUp; - vector jointLookUp; - vector filenames; - vector outputNames; - string thisCompositeFASTAFileName, thisCompositeNameFileName, outputDir; - int start, stop; - MothurOut* m; - - shhhFlowsData(){} - shhhFlowsData(vector f, string cf, string cn, string ou, string flor, vector jl, vector sl, MothurOut* mout, int st, int sp, float cut, float si, float mD, int mx, int tid) { - filenames = f; - thisCompositeFASTAFileName = cf; - thisCompositeNameFileName = cn; - outputDir = ou; - flowOrder = flor; - m = mout; - start = st; - stop = sp; - cutoff= cut; - sigma = si; - minDelta = mD; - maxIters = mx; - jointLookUp = jl; - singleLookUp = sl; - threadID = tid; - } }; -/************************************************************************************************** -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#else -static DWORD WINAPI ShhhFlowsThreadFunction(LPVOID lpParam){ - shhhFlowsData* pDataArray; - pDataArray = (shhhFlowsData*)lpParam; - - try { - - for(int l=pDataArray->start;lstop;l++){ - - if (pDataArray->m->control_pressed) { break; } - - string flowFileName = pDataArray->filenames[l]; - - pDataArray->m->mothurOut("\n>>>>>\tProcessing " + flowFileName + " (file " + toString(l+1) + " of " + toString(pDataArray->filenames.size()) + ")\t<<<<<\n"); - pDataArray->m->mothurOut("Reading flowgrams...\n"); - - vector seqNameVector; - vector lengths; - vector flowDataIntI; - vector flowDataPrI; - map nameMap; - vector uniqueFlowgrams; - vector uniqueCount; - vector mapSeqToUnique; - vector mapUniqueToSeq; - vector uniqueLengths; - int numFlowCells; - - //int numSeqs = getFlowData(flowFileName, seqNameVector, lengths, flowDataIntI, nameMap, numFlowCells); - /***************************************************************************************************** - - ifstream flowFile; - // cout << "herethread " << flowFileName << '\t' << &flowFile << endl; - pDataArray->m->openInputFile(flowFileName, flowFile); - - // cout << "herethread " << flowFileName << endl; - string seqName; - int currentNumFlowCells; - float intensity; - - flowFile >> numFlowCells; - int index = 0;//pcluster - while(!flowFile.eof()){ - - if (pDataArray->m->control_pressed) { flowFile.close(); return 0; } - - flowFile >> seqName >> currentNumFlowCells; - lengths.push_back(currentNumFlowCells); - // cout << "herethread " << seqName << endl; - seqNameVector.push_back(seqName); - nameMap[seqName] = index++;//pcluster - - for(int i=0;i> intensity; - if(intensity > 9.99) { intensity = 9.99; } - int intI = int(100 * intensity + 0.0001); - flowDataIntI.push_back(intI); - } - pDataArray->m->gobble(flowFile); - } - flowFile.close(); - - int numSeqs = seqNameVector.size(); - // cout << numSeqs << endl; - for(int i=0;im->control_pressed) { return 0; } - - int iNumFlowCells = i * numFlowCells; - for(int j=lengths[i];jm->control_pressed) { return 0; } - - pDataArray->m->mothurOut("Identifying unique flowgrams...\n"); - //int numUniques = getUniques(numSeqs, numFlowCells, uniqueFlowgrams, uniqueCount, uniqueLengths, mapSeqToUnique, mapUniqueToSeq, lengths, flowDataPrI, flowDataIntI); - /***************************************************************************************************** - int numUniques = 0; - uniqueFlowgrams.assign(numFlowCells * numSeqs, -1); - uniqueCount.assign(numSeqs, 0); // anWeights - uniqueLengths.assign(numSeqs, 0); - mapSeqToUnique.assign(numSeqs, -1); - mapUniqueToSeq.assign(numSeqs, -1); - - vector uniqueFlowDataIntI(numFlowCells * numSeqs, -1); - - for(int i=0;im->control_pressed) { return 0; } - - int index = 0; - - vector current(numFlowCells); - for(int j=0;j uniqueLengths[j]) { uniqueLengths[j] = lengths[i]; } - break; - } - index++; - } - - if(index == numUniques){ - uniqueLengths[numUniques] = lengths[i]; - uniqueCount[numUniques] = 1; - mapSeqToUnique[i] = numUniques;//anMap - mapUniqueToSeq[numUniques] = i;//anF - - for(int k=0;km->control_pressed) { return 0; } - //flowDataPrI[i] = getProbIntensity(flowDataIntI[i]); - - flowDataPrI[i] = 100000000; - - for(int j=0;jm->control_pressed) { return 0; } - - float negLogProb = pDataArray->singleLookUp[j * NUMBINS + flowDataIntI[i]]; - if(negLogProb < flowDataPrI[i]) { flowDataPrI[i] = negLogProb; } - } - } - - /***************************************************************************************************** - - if (pDataArray->m->control_pressed) { return 0; } - - pDataArray->m->mothurOut("Calculating distances between flowgrams...\n"); - string distFileName = flowFileName.substr(0,flowFileName.find_last_of('.')) + ".shhh.dist"; - unsigned long long begTime = time(NULL); - double begClock = clock(); - - //flowDistParentFork(numFlowCells, distFileName, numUniques, mapUniqueToSeq, mapSeqToUnique, lengths, flowDataPrI, flowDataIntI); - /***************************************************************************************************** - ostringstream outStream; - outStream.setf(ios::fixed, ios::floatfield); - outStream.setf(ios::dec, ios::basefield); - outStream.setf(ios::showpoint); - outStream.precision(6); - - int thisbegTime = time(NULL); - double thisbegClock = clock(); - - for(int i=0;im->control_pressed) { break; } - - for(int j=0;jm->control_pressed) { break; } - - int flowAIntI = flowDataIntI[ANumFlowCells + k]; - float flowAPrI = flowDataPrI[ANumFlowCells + k]; - - int flowBIntI = flowDataIntI[BNumFlowCells + k]; - float flowBPrI = flowDataPrI[BNumFlowCells + k]; - flowDistance += pDataArray->jointLookUp[flowAIntI * NUMBINS + flowBIntI] - flowAPrI - flowBPrI; - } - - flowDistance /= (float) minLength; - /***************************************************************************************************** - - if(flowDistance < 1e-6){ - outStream << mapUniqueToSeq[i] << '\t' << mapUniqueToSeq[j] << '\t' << 0.000000 << endl; - } - else if(flowDistance <= pDataArray->cutoff){ - outStream << mapUniqueToSeq[i] << '\t' << mapUniqueToSeq[j] << '\t' << flowDistance << endl; - } - } - if(i % 100 == 0){ - pDataArray->m->mothurOut(toString(i) + "\t" + toString(time(NULL) - thisbegTime)); - pDataArray->m->mothurOut("\t" + toString((clock()-thisbegClock)/CLOCKS_PER_SEC)); - pDataArray->m->mothurOutEndLine(); - } - } - - ofstream distFile(distFileName.c_str()); - distFile << outStream.str(); - distFile.close(); - - if (pDataArray->m->control_pressed) {} - else { - pDataArray->m->mothurOut(toString(numUniques-1) + "\t" + toString(time(NULL) - thisbegTime)); - pDataArray->m->mothurOut("\t" + toString((clock()-thisbegClock)/CLOCKS_PER_SEC)); - pDataArray->m->mothurOutEndLine(); - } - /***************************************************************************************************** - - pDataArray->m->mothurOutEndLine(); - pDataArray->m->mothurOut("Total time: " + toString(time(NULL) - begTime) + '\t' + toString((clock() - begClock)/CLOCKS_PER_SEC) + '\n'); - - string namesFileName = flowFileName.substr(0,flowFileName.find_last_of('.')) + ".shhh.names"; - //createNamesFile(numSeqs, numUniques, namesFileName, seqNameVector, mapSeqToUnique, mapUniqueToSeq); - /***************************************************************************************************** - vector duplicateNames(numUniques, ""); - for(int i=0;im->openOutputFile(namesFileName, nameFile); - - for(int i=0;im->control_pressed) { nameFile.close(); return 0; } - nameFile << mapUniqueToSeq[i] << '\t' << duplicateNames[i].substr(0, duplicateNames[i].find_last_of(',')) << endl; - } - nameFile.close(); - /***************************************************************************************************** - - if (pDataArray->m->control_pressed) { return 0; } - - pDataArray->m->mothurOut("\nClustering flowgrams...\n"); - string listFileName = flowFileName.substr(0,flowFileName.find_last_of('.')) + ".shhh.list"; - //cluster(listFileName, distFileName, namesFileName); - /***************************************************************************************************** - ReadMatrix* read = new ReadColumnMatrix(distFileName); - read->setCutoff(pDataArray->cutoff); - - NameAssignment* clusterNameMap = new NameAssignment(namesFileName); - clusterNameMap->readMap(); - read->read(clusterNameMap); - - ListVector* list = read->getListVector(); - SparseMatrix* matrix = read->getMatrix(); - - delete read; - delete clusterNameMap; - - RAbundVector* rabund = new RAbundVector(list->getRAbundVector()); - - Cluster* cluster = new CompleteLinkage(rabund, list, matrix, pDataArray->cutoff, "furthest"); - string tag = cluster->getTag(); - - double clusterCutoff = pDataArray->cutoff; - while (matrix->getSmallDist() <= clusterCutoff && matrix->getNNodes() > 0){ - - if (pDataArray->m->control_pressed) { break; } - - cluster->update(clusterCutoff); - } - - list->setLabel(toString(pDataArray->cutoff)); - - ofstream listFileOut; - pDataArray->m->openOutputFile(listFileName, listFileOut); - list->print(listFileOut); - listFileOut.close(); - - delete matrix; delete cluster; delete rabund; delete list; - /***************************************************************************************************** - - if (pDataArray->m->control_pressed) { return 0; } - - vector otuData; - vector cumNumSeqs; - vector nSeqsPerOTU; - vector > aaP; //tMaster->aanP: each row is a different otu / each col contains the sequence indices - vector > aaI; //tMaster->aanI: that are in each otu - can't differentiate between aaP and aaI - vector seqNumber; //tMaster->anP: the sequence id number sorted by OTU - vector seqIndex; //tMaster->anI; the index that corresponds to seqNumber - - - //int numOTUs = getOTUData(numSeqs, listFileName, otuData, cumNumSeqs, nSeqsPerOTU, aaP, aaI, seqNumber, seqIndex, nameMap); - /***************************************************************************************************** - ifstream listFile; - pDataArray->m->openInputFile(listFileName, listFile); - string label; - int numOTUs; - - listFile >> label >> numOTUs; - - otuData.assign(numSeqs, 0); - cumNumSeqs.assign(numOTUs, 0); - nSeqsPerOTU.assign(numOTUs, 0); - aaP.clear();aaP.resize(numOTUs); - - seqNumber.clear(); - aaI.clear(); - seqIndex.clear(); - - string singleOTU = ""; - - for(int i=0;im->control_pressed) { break; } - - listFile >> singleOTU; - - istringstream otuString(singleOTU); - - while(otuString){ - - string seqName = ""; - - for(int j=0;j::iterator nmIt = nameMap.find(seqName); - int index = nmIt->second; - - nameMap.erase(nmIt); - - otuData[index] = i; - nSeqsPerOTU[i]++; - aaP[i].push_back(index); - seqName = ""; - } - } - - map::iterator nmIt = nameMap.find(seqName); - - int index = nmIt->second; - nameMap.erase(nmIt); - - otuData[index] = i; - nSeqsPerOTU[i]++; - aaP[i].push_back(index); - - otuString.get(); - } - - sort(aaP[i].begin(), aaP[i].end()); - for(int j=0;jm->control_pressed) { return 0; } - - pDataArray->m->mothurRemove(distFileName); - pDataArray->m->mothurRemove(namesFileName); - pDataArray->m->mothurRemove(listFileName); - - vector dist; //adDist - distance of sequences to centroids - vector change; //did the centroid sequence change? 0 = no; 1 = yes - vector centroids; //the representative flowgram for each cluster m - vector weight; - vector singleTau; //tMaster->adTau: 1-D Tau vector (1xnumSeqs) - vector nSeqsBreaks; - vector nOTUsBreaks; - - dist.assign(numSeqs * numOTUs, 0); - change.assign(numOTUs, 1); - centroids.assign(numOTUs, -1); - weight.assign(numOTUs, 0); - singleTau.assign(numSeqs, 1.0); - - nSeqsBreaks.assign(2, 0); - nOTUsBreaks.assign(2, 0); - - nSeqsBreaks[0] = 0; - nSeqsBreaks[1] = numSeqs; - nOTUsBreaks[1] = numOTUs; - - if (pDataArray->m->control_pressed) { break; } - - double maxDelta = 0; - int iter = 0; - - begClock = clock(); - begTime = time(NULL); - - pDataArray->m->mothurOut("\nDenoising flowgrams...\n"); - pDataArray->m->mothurOut("iter\tmaxDelta\tnLL\t\tcycletime\n"); - - while((pDataArray->maxIters == 0 && maxDelta > pDataArray->minDelta) || iter < MIN_ITER || (maxDelta > pDataArray->minDelta && iter < pDataArray->maxIters)){ - - if (pDataArray->m->control_pressed) { break; } - - double cycClock = clock(); - unsigned long long cycTime = time(NULL); - //fill(numOTUs, seqNumber, seqIndex, cumNumSeqs, nSeqsPerOTU, aaP, aaI); - /***************************************************************************************************** - int indexFill = 0; - for(int i=0;im->control_pressed) { return 0; } - - cumNumSeqs[i] = indexFill; - for(int j=0;jm->control_pressed) { break; } - - //calcCentroidsDriver(numOTUs, cumNumSeqs, nSeqsPerOTU, seqIndex, change, centroids, singleTau, mapSeqToUnique, uniqueFlowgrams, flowDataIntI, lengths, numFlowCells, seqNumber); - /***************************************************************************************************** - for(int i=0;im->control_pressed) { break; } - - double count = 0; - int position = 0; - int minFlowGram = 100000000; - double minFlowValue = 1e8; - change[i] = 0; //FALSE - - for(int j=0;j 0 && count > MIN_COUNT){ - vector adF(nSeqsPerOTU[i]); - vector anL(nSeqsPerOTU[i]); - - for(int j=0;jsingleLookUp[uniqueFlowgrams[flowAValue] * NUMBINS + flowDataIntI[flowBValue]]; - flowAValue++; - flowBValue++; - } - - dist = dist / (double)lengths[nI]; - /***************************************************************************************************** - adF[k] += dist * tauValue; - } - } - - for(int j=0;jm->control_pressed) { break; } - - //maxDelta = getNewWeights(numOTUs, cumNumSeqs, nSeqsPerOTU, singleTau, seqNumber, weight); - /***************************************************************************************************** - double maxChange = 0; - - for(int i=0;im->control_pressed) { break; } - - double difference = weight[i]; - weight[i] = 0; - - for(int j=0;j maxChange){ maxChange = difference; } - } - maxDelta = maxChange; - /***************************************************************************************************** - - if (pDataArray->m->control_pressed) { break; } - - //double nLL = getLikelihood(numSeqs, numOTUs, nSeqsPerOTU, seqNumber, cumNumSeqs, seqIndex, dist, weight); - /***************************************************************************************************** - vector P(numSeqs, 0); - int effNumOTUs = 0; - - for(int i=0;i MIN_WEIGHT){ - effNumOTUs++; - } - } - - string hold; - for(int i=0;im->control_pressed) { break; } - - for(int j=0;jsigma); - } - } - double nLL = 0.00; - for(int i=0;isigma); - /***************************************************************************************************** - - if (pDataArray->m->control_pressed) { break; } - - //checkCentroids(numOTUs, centroids, weight); - /***************************************************************************************************** - vector unique(numOTUs, 1); - - for(int i=0;im->control_pressed) { break; } - - if(unique[i] == 1){ - for(int j=i+1;jm->control_pressed) { break; } - - //calcNewDistances(numSeqs, numOTUs, nSeqsPerOTU, dist, weight, change, centroids, aaP, singleTau, aaI, seqNumber, seqIndex, uniqueFlowgrams, flowDataIntI, numFlowCells, lengths); - /***************************************************************************************************** - int total = 0; - vector newTau(numOTUs,0); - vector norms(numSeqs, 0); - nSeqsPerOTU.assign(numOTUs, 0); - - for(int i=0;im->control_pressed) { break; } - - int indexOffset = i * numOTUs; - - double offset = 1e8; - - for(int j=0;j MIN_WEIGHT && change[j] == 1){ - //dist[indexOffset + j] = getDistToCentroid(centroids[j], i, lengths[i], uniqueFlowgrams, flowDataIntI, numFlowCells); - /***************************************************************************************************** - int flowAValue = centroids[j] * numFlowCells; - int flowBValue = i * numFlowCells; - - double distTemp = 0; - - for(int l=0;lsingleLookUp[uniqueFlowgrams[flowAValue] * NUMBINS + flowDataIntI[flowBValue]]; - flowAValue++; - flowBValue++; - } - - dist[indexOffset + j] = distTemp / (double)lengths[i]; - /***************************************************************************************************** - - } - - if(weight[j] > MIN_WEIGHT && dist[indexOffset + j] < offset){ - offset = dist[indexOffset + j]; - } - } - - for(int j=0;j MIN_WEIGHT){ - newTau[j] = exp(pDataArray->sigma * (-dist[indexOffset + j] + offset)) * weight[j]; - norms[i] += newTau[j]; - } - else{ - newTau[j] = 0.0; - } - } - - for(int j=0;j MIN_TAU){ - - int oldTotal = total; - - total++; - - singleTau.resize(total, 0); - seqNumber.resize(total, 0); - seqIndex.resize(total, 0); - - singleTau[oldTotal] = newTau[j]; - - aaP[j][nSeqsPerOTU[j]] = oldTotal; - aaI[j][nSeqsPerOTU[j]] = i; - nSeqsPerOTU[j]++; - } - } - - } - - /***************************************************************************************************** - - if (pDataArray->m->control_pressed) { break; } - - iter++; - - pDataArray->m->mothurOut(toString(iter) + '\t' + toString(maxDelta) + '\t' + toString(nLL) + '\t' + toString(time(NULL) - cycTime) + '\t' + toString((clock() - cycClock)/(double)CLOCKS_PER_SEC) + '\n'); - - } - - if (pDataArray->m->control_pressed) { break; } - - pDataArray->m->mothurOut("\nFinalizing...\n"); - //fill(numOTUs, seqNumber, seqIndex, cumNumSeqs, nSeqsPerOTU, aaP, aaI); - /***************************************************************************************************** - int indexFill = 0; - for(int i=0;im->control_pressed) { return 0; } - - cumNumSeqs[i] = indexFill; - for(int j=0;jm->control_pressed) { break; } - - //setOTUs(numOTUs, numSeqs, seqNumber, seqIndex, cumNumSeqs, nSeqsPerOTU, otuData, singleTau, dist, aaP, aaI); - /***************************************************************************************************** - vector bigTauMatrix(numOTUs * numSeqs, 0.0000); - - for(int i=0;im->control_pressed) { break; } - - for(int j=0;j maxTau){ - maxTau = bigTauMatrix[i * numOTUs + j]; - maxOTU = j; - } - } - - otuData[i] = maxOTU; - } - - nSeqsPerOTU.assign(numOTUs, 0); - - for(int i=0;im->control_pressed) { return 0; } - - cumNumSeqs[i] = indexFill; - for(int j=0;jm->control_pressed) { break; } - - vector otuCounts(numOTUs, 0); - for(int i=0;im->control_pressed) { break; } - - double count = 0; - int position = 0; - int minFlowGram = 100000000; - double minFlowValue = 1e8; - change[i] = 0; //FALSE - - for(int j=0;j 0 && count > MIN_COUNT){ - vector adF(nSeqsPerOTU[i]); - vector anL(nSeqsPerOTU[i]); - - for(int j=0;jsingleLookUp[uniqueFlowgrams[flowAValue] * NUMBINS + flowDataIntI[flowBValue]]; - flowAValue++; - flowBValue++; - } - - dist = dist / (double)lengths[nI]; - /***************************************************************************************************** - adF[k] += dist * tauValue; - } - } - - for(int j=0;jm->control_pressed) { break; } - - //writeQualities(numOTUs, numFlowCells, flowFileName, otuCounts, nSeqsPerOTU, seqNumber, singleTau, flowDataIntI, uniqueFlowgrams, cumNumSeqs, mapUniqueToSeq, seqNameVector, centroids, aaI); - if (pDataArray->m->control_pressed) { break; } - /***************************************************************************************************** - string thisOutputDir = pDataArray->outputDir; - if (pDataArray->outputDir == "") { thisOutputDir += pDataArray->m->hasPath(flowFileName); } - string qualityFileName = thisOutputDir + pDataArray->m->getRootName(pDataArray->m->getSimpleName(flowFileName)) + "shhh.qual"; - - ofstream qualityFile; - pDataArray->m->openOutputFile(qualityFileName, qualityFile); - - qualityFile.setf(ios::fixed, ios::floatfield); - qualityFile.setf(ios::showpoint); - qualityFile << setprecision(6); - - vector > qualities(numOTUs); - vector pr(HOMOPS, 0); - - - for(int i=0;im->control_pressed) { break; } - - int index = 0; - int base = 0; - - if(nSeqsPerOTU[i] > 0){ - qualities[i].assign(1024, -1); - - while(index < numFlowCells){ - double maxPrValue = 1e8; - short maxPrIndex = -1; - double count = 0.0000; - - pr.assign(HOMOPS, 0); - - for(int j=0;jsingleLookUp[s * NUMBINS + intensity]; - } - } - - maxPrIndex = uniqueFlowgrams[centroids[i] * numFlowCells + index]; - maxPrValue = pr[maxPrIndex]; - - if(count > MIN_COUNT){ - double U = 0.0000; - double norm = 0.0000; - - for(int s=0;s0.00){ - temp = log10(U); - } - else{ - temp = -10.1; - } - temp = floor(-10 * temp); - value = (int)floor(temp); - if(value > 100){ value = 100; } - - qualities[i][base] = (int)value; - base++; - } - } - - index++; - } - } - - - if(otuCounts[i] > 0){ - qualityFile << '>' << seqNameVector[mapUniqueToSeq[i]] << endl; - - int j=4; //need to get past the first four bases - while(qualities[i][j] != -1){ - qualityFile << qualities[i][j] << ' '; - j++; - } - qualityFile << endl; - } - } - qualityFile.close(); - pDataArray->outputNames.push_back(qualityFileName); - /***************************************************************************************************** - - // writeSequences(thisCompositeFASTAFileName, numOTUs, numFlowCells, flowFileName, otuCounts, uniqueFlowgrams, seqNameVector, aaI, centroids); - if (pDataArray->m->control_pressed) { break; } - /***************************************************************************************************** - thisOutputDir = pDataArray->outputDir; - if (pDataArray->outputDir == "") { thisOutputDir += pDataArray->m->hasPath(flowFileName); } - string fastaFileName = thisOutputDir + pDataArray->m->getRootName(pDataArray->m->getSimpleName(flowFileName)) + "shhh.fasta"; - ofstream fastaFile; - pDataArray->m->openOutputFile(fastaFileName, fastaFile); - - vector names(numOTUs, ""); - - for(int i=0;im->control_pressed) { break; } - - int index = centroids[i]; - - if(otuCounts[i] > 0){ - fastaFile << '>' << seqNameVector[aaI[i][0]] << endl; - - string newSeq = ""; - - for(int j=0;jflowOrder[j % 4]; - for(int k=0;koutputNames.push_back(fastaFileName); - - if(pDataArray->thisCompositeFASTAFileName != ""){ - pDataArray->m->appendFiles(fastaFileName, pDataArray->thisCompositeFASTAFileName); - } - - /***************************************************************************************************** - - //writeNames(thisCompositeNamesFileName, numOTUs, flowFileName, otuCounts, seqNameVector, aaI, nSeqsPerOTU); - if (pDataArray->m->control_pressed) { break; } - /***************************************************************************************************** - thisOutputDir = pDataArray->outputDir; - if (pDataArray->outputDir == "") { thisOutputDir += pDataArray->m->hasPath(flowFileName); } - string nameFileName = thisOutputDir + pDataArray->m->getRootName(pDataArray->m->getSimpleName(flowFileName)) + "shhh.names"; - ofstream nameFileOut; - pDataArray->m->openOutputFile(nameFileName, nameFileOut); - - for(int i=0;im->control_pressed) { break; } - - if(otuCounts[i] > 0){ - nameFileOut << seqNameVector[aaI[i][0]] << '\t' << seqNameVector[aaI[i][0]]; - - for(int j=1;joutputNames.push_back(nameFileName); - - - if(pDataArray->thisCompositeNameFileName != ""){ - pDataArray->m->appendFiles(nameFileName, pDataArray->thisCompositeNameFileName); - } - /***************************************************************************************************** - - //writeClusters(flowFileName, numOTUs, numFlowCells,otuCounts, centroids, uniqueFlowgrams, seqNameVector, aaI, nSeqsPerOTU, lengths, flowDataIntI); - if (pDataArray->m->control_pressed) { break; } - /***************************************************************************************************** - thisOutputDir = pDataArray->outputDir; - if (pDataArray->outputDir == "") { thisOutputDir += pDataArray->m->hasPath(flowFileName); } - string otuCountsFileName = thisOutputDir + pDataArray->m->getRootName(pDataArray->m->getSimpleName(flowFileName)) + "shhh.counts"; - ofstream otuCountsFile; - pDataArray->m->openOutputFile(otuCountsFileName, otuCountsFile); - - string bases = pDataArray->flowOrder; - - for(int i=0;im->control_pressed) { - break; - } - //output the translated version of the centroid sequence for the otu - if(otuCounts[i] > 0){ - int index = centroids[i]; - - otuCountsFile << "ideal\t"; - for(int j=8;joutputNames.push_back(otuCountsFileName) - /***************************************************************************************************** - - //writeGroups(flowFileName, numSeqs, seqNameVector); - if (pDataArray->m->control_pressed) { break; } - /***************************************************************************************************** - thisOutputDir = pDataArray->outputDir; - if (pDataArray->outputDir == "") { thisOutputDir += pDataArray->m->hasPath(flowFileName); } - string fileRoot = thisOutputDir + pDataArray->m->getRootName(pDataArray->m->getSimpleName(flowFileName)); - string groupFileName = fileRoot + "shhh.groups"; - ofstream groupFile; - pDataArray->m->openOutputFile(groupFileName, groupFile); - - for(int i=0;im->control_pressed) { break; } - groupFile << seqNameVector[i] << '\t' << fileRoot << endl; - } - groupFile.close(); - pDataArray->outputNames.push_back(groupFileName); - /***************************************************************************************************** - - pDataArray->m->mothurOut("Total time to process " + flowFileName + ":\t" + toString(time(NULL) - begTime) + '\t' + toString((clock() - begClock)/(double)CLOCKS_PER_SEC) + '\n'); - } - - if (pDataArray->m->control_pressed) { for (int i = 0; i < pDataArray->outputNames.size(); i++) { pDataArray->m->mothurRemove(pDataArray->outputNames[i]); } return 0; } - - return 0; - - } - catch(exception& e) { - pDataArray->m->errorOut(e, "ShhherCommand", "ShhhFlowsThreadFunction"); - exit(1); - } -} -#endif -*/ +//********************************************************************************************************************** #endif diff --git a/source/datastructures/alignmentdb.cpp b/source/datastructures/alignmentdb.cpp index 9fec7377..33de4d32 100644 --- a/source/datastructures/alignmentdb.cpp +++ b/source/datastructures/alignmentdb.cpp @@ -50,72 +50,7 @@ AlignmentDB::AlignmentDB(string fastaFileName, string s, int kmerSize, float gap //bool aligned = false; int tempLength = 0; - #ifdef USE_MPI - int pid, processors; - vector positions; - - MPI_Status status; - MPI_File inMPI; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - int tag = 2001; - - char inFileName[1024]; - strcpy(inFileName, fastaFileName.c_str()); - - MPI_File_open(MPI_COMM_WORLD, inFileName, MPI_MODE_RDONLY, MPI_INFO_NULL, &inMPI); //comm, filename, mode, info, filepointer - - if (pid == 0) { - positions = m->setFilePosFasta(fastaFileName, numSeqs); //fills MPIPos, returns numSeqs - - //send file positions to all processes - for(int i = 1; i < processors; i++) { - MPI_Send(&numSeqs, 1, MPI_INT, i, tag, MPI_COMM_WORLD); - MPI_Send(&positions[0], (numSeqs+1), MPI_LONG, i, tag, MPI_COMM_WORLD); - } - }else{ - MPI_Recv(&numSeqs, 1, MPI_INT, 0, tag, MPI_COMM_WORLD, &status); - positions.resize(numSeqs+1); - MPI_Recv(&positions[0], (numSeqs+1), MPI_LONG, 0, tag, MPI_COMM_WORLD, &status); - } - - //read file - for(int i=0;icontrol_pressed) { templateSequences.clear(); break; } - - //read next sequence - int length = positions[i+1] - positions[i]; - char* buf4 = new char[length]; - - MPI_File_read_at(inMPI, positions[i], buf4, length, MPI_CHAR, &status); - - string tempBuf = buf4; - if (tempBuf.length() > length) { tempBuf = tempBuf.substr(0, length); } - delete buf4; - - istringstream iss (tempBuf,istringstream::in); - - Sequence temp(iss); - if (temp.getName() != "") { - templateSequences.push_back(temp); - - if (rdb->save) { rdb->referenceSeqs.push_back(temp); } - - //save longest base - if (temp.getUnaligned().length() >= longest) { longest = temp.getUnaligned().length()+1; } - if (tempLength != 0) { - if (tempLength != temp.getAligned().length()) { m->mothurOut("[ERROR]: template is not aligned, aborting.\n"); m->control_pressed=true; } - }else { tempLength = temp.getAligned().length(); } - } - } - - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - - MPI_File_close(&inMPI); - - #else - ifstream fastaFile; + ifstream fastaFile; m->openInputFile(fastaFileName, fastaFile); while (!fastaFile.eof()) { @@ -137,7 +72,6 @@ AlignmentDB::AlignmentDB(string fastaFileName, string s, int kmerSize, float gap } } fastaFile.close(); - #endif numSeqs = templateSequences.size(); //all of this is elsewhere already! @@ -160,16 +94,15 @@ AlignmentDB::AlignmentDB(string fastaFileName, string s, int kmerSize, float gap if(method == "kmer") { search = new KmerDB(fastaFileName, kmerSize); - #ifdef USE_MPI - #else - kmerDBName = fastaFileName.substr(0,fastaFileName.find_last_of(".")+1) + char('0'+ kmerSize) + "mer"; - ifstream kmerFileTest(kmerDBName.c_str()); + + kmerDBName = fastaFileName.substr(0,fastaFileName.find_last_of(".")+1) + char('0'+ kmerSize) + "mer"; + ifstream kmerFileTest(kmerDBName.c_str()); - if(kmerFileTest){ - bool GoodFile = m->checkReleaseVersion(kmerFileTest, m->getVersion()); - if (GoodFile) { needToGenerate = false; } - } - #endif + if(kmerFileTest){ + bool GoodFile = m->checkReleaseVersion(kmerFileTest, m->getVersion()); + if (GoodFile) { needToGenerate = false; } + } + } else if(method == "suffix") { search = new SuffixDB(numSeqs); } else if(method == "blast") { search = new BlastDB(fastaFileName.substr(0,fastaFileName.find_last_of(".")+1), gapOpen, gapExtend, match, misMatch, "", threadID); } diff --git a/source/datastructures/distancedb.hpp b/source/datastructures/distancedb.hpp index 2624d6d6..41509305 100644 --- a/source/datastructures/distancedb.hpp +++ b/source/datastructures/distancedb.hpp @@ -26,11 +26,6 @@ class DistanceDB : public Database { string getName(int i) { return data[i].getName(); } vector findClosestSequences(Sequence*, int); // returns indexes of n closest sequences to query - #ifdef USE_MPI - int MPISend(int) {return 0;} - int MPIRecv(int) {return 0;} - #endif - private: vector data; Dist* distCalculator; diff --git a/source/engine.cpp b/source/engine.cpp index dfa3316b..780fd131 100644 --- a/source/engine.cpp +++ b/source/engine.cpp @@ -64,15 +64,6 @@ bool InteractEngine::getInput(){ while(quitCommandCalled != 1){ - #ifdef USE_MPI - int pid, processors; - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - - #endif if (mout->changedSeqNames) { mout->mothurOut("[WARNING]: your sequence names contained ':'. I changed them to '_' to avoid problems in your downstream analysis.\n"); } @@ -83,30 +74,6 @@ bool InteractEngine::getInput(){ //allow user to omit the () on the quit command if (input == "quit") { input = "quit()"; } - - #ifdef USE_MPI - //send commandName - for(int i = 1; i < processors; i++) { - int length = input.length(); - MPI_Send(&length, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&input[0], length, MPI_CHAR, i, 2001, MPI_COMM_WORLD); - - } - }else { - int length; - MPI_Recv(&length, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - //recieve container - char* tempBuf = new char[length]; - MPI_Recv(&tempBuf[0], length, MPI_CHAR, 0, 2001, MPI_COMM_WORLD, &status); - - input = tempBuf; - if (input.length() > length) { input = input.substr(0, length); } - delete tempBuf; - } - - - #endif - CommandOptionParser parser(input); commandName = parser.getCommandString(); @@ -114,13 +81,7 @@ bool InteractEngine::getInput(){ if (commandName != "") { mout->executing = true; - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if ((cFactory->MPIEnabled(commandName)) || (pid == 0)) { - //cout << pid << " is in execute " << commandName << endl; - #endif + //executes valid command mout->changedSeqNames = false; mout->runParse = true; @@ -145,10 +106,6 @@ bool InteractEngine::getInput(){ mout->control_pressed = 0; mout->executing = false; - #ifdef USE_MPI - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #endif }else { mout->mothurOut("Invalid.\n"); } @@ -258,45 +215,10 @@ bool BatchEngine::getInput(){ int count = 0; while(quitCommandCalled != 1){ - #ifdef USE_MPI - int pid, processors; - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - - #endif - input = getNextCommand(inputBatchFile); count++; - #ifdef USE_MPI - //send commandName - for(int i = 1; i < processors; i++) { - int length = input.length(); - MPI_Send(&length, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&input[0], length, MPI_CHAR, i, 2001, MPI_COMM_WORLD); - - } - }else { - int length; - MPI_Recv(&length, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - //recieve container - char* tempBuf = new char[length]; - MPI_Recv(&tempBuf[0], length, MPI_CHAR, 0, 2001, MPI_COMM_WORLD, &status); - - input = tempBuf; - if (input.length() > length) { input = input.substr(0, length); } - delete tempBuf; - } - - - #endif - - - - if (input[0] != '#') { + if (input[0] != '#') { if (mout->changedSeqNames) { mout->mothurOut("[WARNING]: your sequence names contained ':'. I changed them to '_' to avoid problems in your downstream analysis.\n"); } mout->mothurOut("\nmothur > " + input + "\n"); @@ -313,13 +235,7 @@ bool BatchEngine::getInput(){ if (commandName != "") { mout->executing = true; - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - -//cout << pid << " is here " << commandName << '\t' << count << endl; - if ((cFactory->MPIEnabled(commandName)) || (pid == 0)) { - #endif + //executes valid command mout->changedSeqNames = false; mout->runParse = true; @@ -345,10 +261,6 @@ bool BatchEngine::getInput(){ mout->control_pressed = 0; mout->executing = false; - #ifdef USE_MPI - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #endif }else { mout->mothurOut("Invalid.\n"); } @@ -433,16 +345,6 @@ bool ScriptEngine::getInput(){ while(quitCommandCalled != 1){ - #ifdef USE_MPI - int pid, processors; - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - //cout << pid << " is here " << processors << endl; - #endif - input = getNextCommand(listOfCommands); if (input == "") { input = "quit()"; } @@ -457,34 +359,7 @@ bool ScriptEngine::getInput(){ mout->mothurOut("\nmothur > " + input + "\n"); } - #ifdef USE_MPI - //send commandName - for(int i = 1; i < processors; i++) { - //cout << pid << " is here " << input << endl; - int length = input.length(); - MPI_Send(&length, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - //cout << pid << " is here " << length << '\t' << input << endl; - MPI_Send(&input[0], length, MPI_CHAR, i, 2001, MPI_COMM_WORLD); - //cout << pid << " is here " << length << '\t' << input << endl; - } - }else { - int length; - MPI_Recv(&length, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - //cout << pid << " is here " << length << endl; - //recieve container - char* tempBuf = new char[length]; - MPI_Recv(&tempBuf[0], length, MPI_CHAR, 0, 2001, MPI_COMM_WORLD, &status); - //cout << pid << " is here " << length << '\t' << tempBuf << endl; - input = tempBuf; - if (input.length() > length) { input = input.substr(0, length); } - delete tempBuf; - } - - - #endif - - - if (mout->control_pressed) { input = "quit()"; } + if (mout->control_pressed) { input = "quit()"; } //allow user to omit the () on the quit command if (input == "quit") { input = "quit()"; } @@ -495,16 +370,7 @@ bool ScriptEngine::getInput(){ if (commandName != "") { mout->executing = true; - #ifdef USE_MPI - int pid, numProcesses; - - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - MPI_Comm_size(MPI_COMM_WORLD, &numProcesses); -//cout << pid << " is here " << commandName << endl; - if ((cFactory->MPIEnabled(commandName)) || (pid == 0)) { - //cout << pid << " is in execute" << endl; - #endif //executes valid command mout->changedSeqNames = false; mout->runParse = true; @@ -529,11 +395,6 @@ bool ScriptEngine::getInput(){ mout->control_pressed = 0; mout->executing = false; - #ifdef USE_MPI - //cout << pid << " is done in execute" << endl; - } - MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case - #endif }else { mout->mothurOut("Invalid.\n"); } diff --git a/source/mothur.cpp b/source/mothur.cpp index 37889a5a..e203fbb9 100644 --- a/source/mothur.cpp +++ b/source/mothur.cpp @@ -42,10 +42,6 @@ int main(int argc, char *argv[]){ time_t ltime = time(NULL); /* calendar time */ string logFileName = "mothur." + toString(ltime) + ".logfile"; - #ifdef USE_MPI - MPI_Init(&argc, &argv); - #endif - m->setFileName(logFileName); #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -69,11 +65,6 @@ int main(int argc, char *argv[]){ m->setDefaultPath(temp); #endif - #ifdef USE_MPI - int version, subversion; - MPI_Get_version(&version, &subversion); - #endif - //get releaseDate from Make string releaseDate = RELEASE_DATE; string mothurVersion = VERSION; @@ -174,12 +165,7 @@ int main(int argc, char *argv[]){ m->mothurOutEndLine(); m->mothurOutEndLine(); m->mothurOut("Type 'quit()' to exit program"); - m->mothurOutEndLine(); - - #ifdef USE_MPI - m->mothurOutJustToLog("Using MPI\tversion "); - m->mothurOutJustToLog(toString(version) + "." + toString(subversion) + "\n"); - #endif + m->mothurOutEndLine(); } //srand(54321); @@ -223,9 +209,6 @@ int main(int argc, char *argv[]){ #endif m->mothurOut(OS + "\nMothur version=" + mothurVersion + "\nRelease Date=" + releaseDate); m->mothurOutEndLine(); m->mothurOutEndLine(); m->closeLog(); - #ifdef USE_MPI - MPI_Finalize(); - #endif m->mothurRemove(logFileName); return 0; @@ -292,11 +275,7 @@ int main(int argc, char *argv[]){ if (!createLogFile) { m->mothurRemove(newlogFileName); } if (mothur != NULL) { delete mothur; } - - #ifdef USE_MPI - MPI_Finalize(); - #endif - + return 0; } catch(exception& e) { diff --git a/source/mothur.h b/source/mothur.h index 8616395a..e033f492 100644 --- a/source/mothur.h +++ b/source/mothur.h @@ -55,9 +55,6 @@ #include #include -#ifdef USE_MPI - #include "mpi.h" -#endif /***********************************************************************/ #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) diff --git a/source/mothurout.cpp b/source/mothurout.cpp index b5ef8d62..2f3ddda2 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -261,19 +261,7 @@ string MothurOut::findProgramPath(string programName){ void MothurOut::setFileName(string filename) { try { logFileName = filename; - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - openOutputFile(filename, out); - - #ifdef USE_MPI - } - #endif } catch(exception& e) { errorOut(e, "MothurOut", "setFileName"); @@ -313,19 +301,7 @@ void MothurOut::setOutputDir(string pathname) { /*********************************************************************************************/ void MothurOut::closeLog() { try { - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - out.close(); - - #ifdef USE_MPI - } - #endif } catch(exception& e) { errorOut(e, "MothurOut", "closeLog"); @@ -347,27 +323,18 @@ MothurOut::~MothurOut() { /*********************************************************************************************/ void MothurOut::mothurOut(string output) { try { - - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - if (!quietMode) { - out << output; - logger() << output; - }else { - //check for this being an error - if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { - out << output; - logger() << output; - } - } - - #ifdef USE_MPI - } - #endif + + if (!quietMode) { + out << output; + logger() << output; + }else { + //check for this being an error + if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { + out << output; + logger() << output; + } + } + } catch(exception& e) { errorOut(e, "MothurOut", "MothurOut"); @@ -378,25 +345,14 @@ void MothurOut::mothurOut(string output) { void MothurOut::mothurOutJustToScreen(string output) { try { -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen -#endif - if (!quietMode) { + if (!quietMode) { + logger() << output; + }else { + //check for this being an error + if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { logger() << output; - }else { - //check for this being an error - if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { - logger() << output; - } } - - -#ifdef USE_MPI } -#endif } catch(exception& e) { errorOut(e, "MothurOut", "MothurOut"); @@ -406,21 +362,10 @@ void MothurOut::mothurOutJustToScreen(string output) { /*********************************************************************************************/ void MothurOut::mothurOutEndLine() { try { - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - if (!quietMode) { out << endl; logger() << endl; } - - #ifdef USE_MPI - } - #endif } catch(exception& e) { errorOut(e, "MothurOut", "MothurOutEndLine"); @@ -430,32 +375,19 @@ void MothurOut::mothurOutEndLine() { /*********************************************************************************************/ void MothurOut::mothurOut(string output, ofstream& outputFile) { try { - -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen -#endif - if (!quietMode) { + if (!quietMode) { + out << output; + outputFile << output; + logger() << output; + }else { + //check for this being an error + if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { out << output; outputFile << output; logger() << output; - }else { - //check for this being an error - if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { - out << output; - outputFile << output; - logger() << output; - } - } - - -#ifdef USE_MPI - } -#endif - + + } } catch(exception& e) { errorOut(e, "MothurOut", "MothurOut"); @@ -465,21 +397,11 @@ void MothurOut::mothurOut(string output, ofstream& outputFile) { /*********************************************************************************************/ void MothurOut::mothurOutEndLine(ofstream& outputFile) { try { -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen -#endif - if (!quietMode) { - out << endl; - outputFile << endl; - logger() << endl; - } - -#ifdef USE_MPI - } -#endif + if (!quietMode) { + out << endl; + outputFile << endl; + logger() << endl; + } } catch(exception& e) { errorOut(e, "MothurOut", "MothurOutEndLine"); @@ -489,24 +411,16 @@ void MothurOut::mothurOutEndLine(ofstream& outputFile) { /*********************************************************************************************/ void MothurOut::mothurOutJustToLog(string output) { try { - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); - - if (pid == 0) { //only one process should output to screen - #endif - if (!quietMode) { - out << output; - }else { - //check for this being an error - if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { - out << output; - } - } - - #ifdef USE_MPI - } - #endif + + if (!quietMode) { + out << output; + }else { + //check for this being an error + if ((output.find("[ERROR]") != string::npos) || (output.find("mothur >") != string::npos)) { + out << output; + } + } + } catch(exception& e) { errorOut(e, "MothurOut", "MothurOutJustToLog"); @@ -861,12 +775,6 @@ bool MothurOut::dirCheck(string& dirName){ if (dirName == "") { return false; } string tag = ""; - #ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - tag = toString(pid); - #endif //add / to name if needed string lastChar = dirName.substr(dirName.length()-1); @@ -905,12 +813,6 @@ bool MothurOut::dirCheck(string& dirName, string noError){ if (dirName == "") { return false; } string tag = ""; -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - tag = toString(pid); -#endif //add / to name if needed string lastChar = dirName.substr(dirName.length()-1); @@ -951,12 +853,6 @@ bool MothurOut::mkDir(string& dirName){ if (dirExist) { return true; } string tag = ""; -#ifdef USE_MPI - int pid; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - - tag = toString(pid); -#endif string makeDirectoryCommand = ""; diff --git a/source/read/splitmatrix.cpp b/source/read/splitmatrix.cpp index 44057bf8..d88fe571 100644 --- a/source/read/splitmatrix.cpp +++ b/source/read/splitmatrix.cpp @@ -142,9 +142,6 @@ int SplitMatrix::splitClassify(){ /***********************************************************************/ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numGroups){ try { - #ifdef USE_MPI - createDistanceFilesFromTaxMPI(seqGroup, numGroups); - #else map copyGroups = seqGroup; map::iterator it; @@ -239,7 +236,7 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG splitNames(seqGroup, numGroups, tempDistFiles); if (m->control_pressed) { for (int i = 0; i < dists.size(); i++) { m->mothurRemove((dists[i].begin()->first)); m->mothurRemove((dists[i].begin()->second)); } dists.clear(); } -#endif + return 0; } catch(exception& e) { @@ -248,111 +245,6 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG } } /***********************************************************************/ -#ifdef USE_MPI -int SplitMatrix::createDistanceFilesFromTaxMPI(map& seqGroup, int numGroups){ - try { - map copyGroups = seqGroup; - map::iterator it; - set names; - - for (int i = 0; i < numGroups; i++) { //remove old temp files, just in case - m->mothurRemove((fastafile + "." + toString(i) + ".temp")); - } - - int pid, numSeqsPerProcessor; - int tag = 2001; - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (pid == 0) { - - ifstream in; - m->openInputFile(fastafile, in); - - //parse fastafile - ofstream outFile; - while (!in.eof()) { - Sequence query(in); m->gobble(in); - if (query.getName() != "") { - - it = seqGroup.find(query.getName()); - - //save names in case no namefile is given - if ((namefile == "") && (countfile == "")) { names.insert(query.getName()); } - - if (it != seqGroup.end()) { //not singleton - m->openOutputFileAppend((fastafile + "." + toString(it->second) + ".temp"), outFile); - query.printSequence(outFile); - outFile.close(); - - copyGroups.erase(query.getName()); - } - } - } - in.close(); - - //warn about sequence in groups that are not in fasta file - for(it = copyGroups.begin(); it != copyGroups.end(); it++) { - m->mothurOut("ERROR: " + it->first + " is missing from your fastafile. This could happen if your taxonomy file is not unique and your fastafile is, or it could indicate and error."); m->mothurOutEndLine(); - exit(1); - } - - copyGroups.clear(); - } - - //process each distance file - for (int i = 0; i < numGroups; i++) { - - string options = ""; - if (classic) { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", output=lt"; } - else { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", cutoff=" + toString(distCutoff); } - if (outputDir != "") { options += ", outputdir=" + outputDir; } - - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - m->mothurOut("Running command: dist.seqs(" + options + ")"); m->mothurOutEndLine(); - - Command* command = new DistanceCommand(options); - - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - - command->execute(); - delete command; - - m->mothurRemove((fastafile + "." + toString(i) + ".temp")); - - //remove old names files just in case - if (namefile != "") { m->mothurRemove((namefile + "." + toString(i) + ".temp")); } - else { m->mothurRemove((countfile + "." + toString(i) + ".temp")); } - } - - //restore old fasta file name since dist.seqs overwrites it with the temp files - m->setFastaFile(fastafile); - - vector tempDistFiles; - for(int i=0;ihasPath(fastafile); } - string tempDistFile = ""; - if (classic) { tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "phylip.dist";} - else { tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "dist"; } - tempDistFiles.push_back(tempDistFile); - } - - if (pid == 0) { - splitNames(seqGroup, numGroups, tempDistFiles); - } - - if (m->control_pressed) { for (int i = 0; i < dists.size(); i++) { m->mothurRemove((dists[i].begin()->first)); m->mothurRemove((dists[i].begin()->second)); } dists.clear(); } - - return 0; - } - catch(exception& e) { - m->errorOut(e, "SplitMatrix", "createDistanceFilesFromTax"); - exit(1); - } -} -#endif -/***********************************************************************/ int SplitMatrix::splitDistanceFileByTax(map& seqGroup, int numGroups){ try { map::iterator it; diff --git a/source/read/splitmatrix.h b/source/read/splitmatrix.h index 8be299ec..7b468e99 100644 --- a/source/read/splitmatrix.h +++ b/source/read/splitmatrix.h @@ -43,9 +43,6 @@ class SplitMatrix { int splitNames(map& groups, int, vector&); int splitDistanceFileByTax(map&, int); int createDistanceFilesFromTax(map&, int); - #ifdef USE_MPI - int createDistanceFilesFromTaxMPI(map& seqGroup, int numGroups); - #endif }; /******************************************************/ diff --git a/source/validparameter.cpp b/source/validparameter.cpp index 42a8731e..252831fe 100644 --- a/source/validparameter.cpp +++ b/source/validparameter.cpp @@ -229,16 +229,6 @@ string ValidParameters::validFile(map& container, string paramet if (pos != string::npos) { m->sharedHeaderMode = "tax"; } else { m->sharedHeaderMode = "otu"; } - #ifdef USE_MPI - int pid, processors; - MPI_Status status; - MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are - MPI_Comm_size(MPI_COMM_WORLD, &processors); - - if (commandName == "") { processors = 1; } - - if (pid == 0) { - #endif ifstream in; ableToOpen = m->openInputFile(it->second, in, "noerror"); in.close(); @@ -267,33 +257,6 @@ string ValidParameters::validFile(map& container, string paramet } } - - - #ifdef USE_MPI - for(int i = 1; i < processors; i++) { - MPI_Send(&ableToOpen, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - - int length = container[parameter].length(); - MPI_Send(&length, 1, MPI_INT, i, 2001, MPI_COMM_WORLD); - MPI_Send(&(container[parameter][0]), length, MPI_CHAR, i, 2001, MPI_COMM_WORLD); - - } - }else { - MPI_Recv(&ableToOpen, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - - int length; - MPI_Recv(&length, 1, MPI_INT, 0, 2001, MPI_COMM_WORLD, &status); - //recieve container - char* tempBuf = new char[length]; - MPI_Recv(&tempBuf[0], length, MPI_CHAR, 0, 2001, MPI_COMM_WORLD, &status); - - container[parameter] = tempBuf; - if (container[parameter].length() > length) { container[parameter] = container[parameter].substr(0, length); } - delete tempBuf; - } - - #endif - if (ableToOpen == 1) { m->mothurOut("Unable to open " + container[parameter]); m->mothurOutEndLine(); return "not open"; @@ -383,4 +346,5 @@ vector ValidParameters::addParameters(string parameters[], int size) { exit(1); } } +/***********************************************************************/ From 0dad4b4fe6fe953bc2d87551aecae9194f615bd4 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 19 Aug 2015 12:35:34 -0400 Subject: [PATCH 028/135] Fixes mothurConvert error if "seed" was part of filename. Issue #143 --- source/commandfactory.cpp | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index 9ca704d9..af91caf5 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -381,8 +381,8 @@ int CommandFactory::checkForRedirects(string optionString) { } } - pos = optionString.find("seed"); - if (pos != string::npos) { //user has set inputdir in command option string + pos = optionString.find("seed="); + if (pos != string::npos) { //user has set seed in command option string string intputOption = ""; bool foundEquals = false; for(int i=pos;imothurOut("Setting random seed to " + toString(random) + ".\n\n"); } - } From 1240723c28be57f300f16eb9cf5dfa0304c5289c Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 19 Aug 2015 12:56:32 -0400 Subject: [PATCH 029/135] Removes OS limit on open files for cluster.split Issue #142 Bug Fix --- source/read/splitmatrix.cpp | 104 +++++--------------------------------------- 1 file changed, 11 insertions(+), 93 deletions(-) diff --git a/source/read/splitmatrix.cpp b/source/read/splitmatrix.cpp index d88fe571..356ee749 100644 --- a/source/read/splitmatrix.cpp +++ b/source/read/splitmatrix.cpp @@ -150,15 +150,7 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG ifstream in; m->openInputFile(fastafile, in); - //open output files - map outFiles; - for (int i = 0; i < numGroups; i++) { - ofstream* outFile = new ofstream(); - //remove old temp files, just in case - m->mothurRemove((fastafile + "." + toString(i) + ".temp")); - m->openOutputFileAppend((fastafile + "." + toString(i) + ".temp"), *outFile); - outFiles[i] = outFile; - } + for (int i = 0; i < numGroups; i++) { m->mothurRemove((fastafile + "." + toString(i) + ".temp")); } //parse fastafile while (!in.eof()) { @@ -170,29 +162,27 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG //save names in case no namefile is given if ((namefile == "") && (countfile == "")) { names.insert(query.getName()); } - if (it != seqGroup.end()) { //not singleton - query.printSequence(*outFiles[it->second]); + if (it != seqGroup.end()) { //not singleton + ofstream outFile; + m->openOutputFileAppend((fastafile + "." + toString(it->second) + ".temp"), outFile); + query.printSequence(outFile); + outFile.close(); copyGroups.erase(query.getName()); } } } in.close(); - - //Close output files - for (map::iterator it = outFiles.begin(); it != outFiles.end(); it++) { - it->second->close(); - delete it->second; - it->second = 0; - } - + + bool error = false; //warn about sequence in groups that are not in fasta file for(it = copyGroups.begin(); it != copyGroups.end(); it++) { m->mothurOut("ERROR: " + it->first + " is missing from your fastafile. This could happen if your taxonomy file is not unique and your fastafile is, or it could indicate and error."); m->mothurOutEndLine(); - exit(1); + error = true; } - copyGroups.clear(); + if (error) { exit(1); } + //process each distance file for (int i = 0; i < numGroups; i++) { @@ -452,42 +442,6 @@ int SplitMatrix::splitDistanceLarge(){ //if groupB is written to file it is above buffer size so read and write to new merged file if (wroteOutPut[groupIDB]) { string fileName2 = distFile + "." + toString(groupIDB) + ".temp"; - /*ifstream fileB(fileName2.c_str(), ios::ate); - - outFile.open(fileName.c_str(), ios::app); - - long size; - char* memblock; - - size = fileB.tellg(); - - fileB.seekg (0, ios::beg); - - int numRead = size / 1024; - int lastRead = size % 1024; - - for (int i = 0; i < numRead; i++) { - - memblock = new char [1024]; - - fileB.read (memblock, 1024); - - string temp = memblock; - outFile << temp.substr(0, 1024); - - delete memblock; - } - - memblock = new char [lastRead]; - - fileB.read (memblock, lastRead); - - //not sure why but it will read more than lastRead char...?? - string temp = memblock; - outFile << temp.substr(0, lastRead); - delete memblock; - - fileB.close();*/ m->appendFiles(fileName2, fileName); m->mothurRemove(fileName2); @@ -517,42 +471,6 @@ int SplitMatrix::splitDistanceLarge(){ if (wroteOutPut[groupIDA]) { string fileName2 = distFile + "." + toString(groupIDA) + ".temp"; - /*ifstream fileB(fileName2.c_str(), ios::ate); - - outFile.open(fileName.c_str(), ios::app); - - long size; - char* memblock; - - size = fileB.tellg(); - - fileB.seekg (0, ios::beg); - - int numRead = size / 1024; - int lastRead = size % 1024; - - for (int i = 0; i < numRead; i++) { - - memblock = new char [1024]; - - fileB.read (memblock, 1024); - string temp = memblock; - outFile << temp.substr(0, 1024); - - delete memblock; - } - - memblock = new char [lastRead]; - - fileB.read (memblock, lastRead); - - //not sure why but it will read more than lastRead char...?? - string temp = memblock; - outFile << temp.substr(0, lastRead); - - delete memblock; - - fileB.close();*/ m->appendFiles(fileName2, fileName); m->mothurRemove(fileName2); From 3ac9a7bf4f7f745a1ad0f9d6502efaa23e2701f8 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 19 Aug 2015 14:07:17 -0400 Subject: [PATCH 030/135] Changes variable names of fasta and name files --- source/commands/deconvolutecommand.cpp | 56 ++++++++++++++++++---------------- source/commands/deconvolutecommand.h | 2 +- 2 files changed, 30 insertions(+), 28 deletions(-) diff --git a/source/commands/deconvolutecommand.cpp b/source/commands/deconvolutecommand.cpp index 367a8371..f288d59c 100644 --- a/source/commands/deconvolutecommand.cpp +++ b/source/commands/deconvolutecommand.cpp @@ -16,6 +16,7 @@ vector DeconvoluteCommand::setParameters(){ CommandParameter pfasta("fasta", "InputTypes", "", "", "none", "none", "none","fasta-name",false,true,true); parameters.push_back(pfasta); CommandParameter pname("name", "InputTypes", "", "", "namecount", "none", "none","name",false,false,true); parameters.push_back(pname); CommandParameter pcount("count", "InputTypes", "", "", "namecount", "none", "none","count",false,false,true); parameters.push_back(pcount); + CommandParameter pformat("format", "Multiple", "count-name", "name", "", "", "","",false,false, true); parameters.push_back(pformat); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -34,9 +35,10 @@ string DeconvoluteCommand::getHelpString(){ try { string helpString = ""; helpString += "The unique.seqs command reads a fastafile and creates a name or count file.\n"; - helpString += "It creates a file where the first column is the groupname and the second column is a list of sequence names who have the same sequence. \n"; - helpString += "If the sequence is unique the second column will just contain its name. \n"; - helpString += "The unique.seqs command parameters are fasta and name. fasta is required, unless there is a valid current fasta file.\n"; + helpString += "The unique.seqs command parameters are fasta, name, count and format. fasta is required, unless there is a valid current fasta file.\n"; + helpString += "The name parameter is used to provide an existing name file associated with the fasta file. \n"; + helpString += "The count parameter is used to provide an existing count file associated with the fasta file. \n"; + helpString += "The format parameter is used to indicate what type of file you want outputted. Choices are name and count, default=name.\n"; helpString += "The unique.seqs command should be in the following format: \n"; helpString += "unique.seqs(fasta=yourFastaFile) \n"; return helpString; @@ -140,36 +142,36 @@ DeconvoluteCommand::DeconvoluteCommand(string option) { //check for required parameters - inFastaName = validParameter.validFile(parameters, "fasta", true); - if (inFastaName == "not open") { abort = true; } - else if (inFastaName == "not found") { - inFastaName = m->getFastaFile(); - if (inFastaName != "") { m->mothurOut("Using " + inFastaName + " as input file for the fasta parameter."); m->mothurOutEndLine(); } + fastafile = validParameter.validFile(parameters, "fasta", true); + if (fastafile == "not open") { abort = true; } + else if (fastafile == "not found") { + fastafile = m->getFastaFile(); + if (fastafile != "") { m->mothurOut("Using " + fastafile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } else { m->mothurOut("You have no current fastafile and the fasta parameter is required."); m->mothurOutEndLine(); abort = true; } - }else { m->setFastaFile(inFastaName); } + }else { m->setFastaFile(fastafile); } //if the user changes the output directory command factory will send this info to us in the output parameter outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; - outputDir += m->hasPath(inFastaName); //if user entered a file with a path then preserve it + outputDir += m->hasPath(fastafile); //if user entered a file with a path then preserve it } - oldNameMapFName = validParameter.validFile(parameters, "name", true); - if (oldNameMapFName == "not open") { oldNameMapFName = ""; abort = true; } - else if (oldNameMapFName == "not found"){ oldNameMapFName = ""; } - else { m->setNameFile(oldNameMapFName); } + namefile = validParameter.validFile(parameters, "name", true); + if (namefile == "not open") { namefile = ""; abort = true; } + else if (namefile == "not found"){ namefile = ""; } + else { m->setNameFile(namefile); } countfile = validParameter.validFile(parameters, "count", true); if (countfile == "not open") { abort = true; countfile = ""; } else if (countfile == "not found") { countfile = ""; } else { m->setCountTableFile(countfile); } - if ((countfile != "") && (oldNameMapFName != "")) { m->mothurOut("When executing a unique.seqs command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; } + if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a unique.seqs command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; } if (countfile == "") { - if (oldNameMapFName == "") { - vector files; files.push_back(inFastaName); + if (namefile == "") { + vector files; files.push_back(fastafile); parser.getNameFile(files); } } @@ -190,20 +192,20 @@ int DeconvoluteCommand::execute() { //prepare filenames and open files map variables; - variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(inFastaName)); + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(fastafile)); string outNameFile = getOutputFileName("name", variables); string outCountFile = getOutputFileName("count", variables); - variables["[extension]"] = m->getExtension(inFastaName); + variables["[extension]"] = m->getExtension(fastafile); string outFastaFile = getOutputFileName("fasta", variables); map nameMap; map::iterator itNames; - if (oldNameMapFName != "") { - m->readNames(oldNameMapFName, nameMap); - if (oldNameMapFName == outNameFile){ + if (namefile != "") { + m->readNames(namefile, nameMap); + if (namefile == outNameFile){ //prepare filenames and open files map mvariables; - mvariables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(inFastaName)); + mvariables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(fastafile)); mvariables["[tag]"] = "unique"; outNameFile = getOutputFileName("name", mvariables); } @@ -214,7 +216,7 @@ int DeconvoluteCommand::execute() { if (countfile == outCountFile){ //prepare filenames and open files map mvariables; - mvariables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(inFastaName)); + mvariables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(fastafile)); mvariables["[tag]"] = "unique"; outCountFile = getOutputFileName("count", mvariables); } } @@ -222,7 +224,7 @@ int DeconvoluteCommand::execute() { if (m->control_pressed) { return 0; } ifstream in; - m->openInputFile(inFastaName, in); + m->openInputFile(fastafile, in); ofstream outFasta; m->openOutputFile(outFastaFile, outFasta); @@ -252,7 +254,7 @@ int DeconvoluteCommand::execute() { //output to unique fasta file seq.printSequence(outFasta); - if (oldNameMapFName != "") { + if (namefile != "") { itNames = nameMap.find(seq.getName()); if (itNames == nameMap.end()) { //namefile and fastafile do not match @@ -266,7 +268,7 @@ int DeconvoluteCommand::execute() { sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); }else { sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); } }else { //this is a dup - if (oldNameMapFName != "") { + if (namefile != "") { itNames = nameMap.find(seq.getName()); if (itNames == nameMap.end()) { //namefile and fastafile do not match diff --git a/source/commands/deconvolutecommand.h b/source/commands/deconvolutecommand.h index e514bdae..8a390a15 100644 --- a/source/commands/deconvolutecommand.h +++ b/source/commands/deconvolutecommand.h @@ -39,7 +39,7 @@ class DeconvoluteCommand : public Command { private: - string inFastaName, oldNameMapFName, outputDir, countfile; + string fastafile, namefile, outputDir, countfile, format; vector outputNames; bool abort; From 9c18edd6d43decdd7be17bbc72b439b43a31b591 Mon Sep 17 00:00:00 2001 From: pschloss Date: Mon, 24 Aug 2015 11:48:19 -0400 Subject: [PATCH 031/135] Remove comment before random_shuffle to close issue #153 --- source/datastructures/sparsedistancematrix.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/datastructures/sparsedistancematrix.cpp b/source/datastructures/sparsedistancematrix.cpp index 417e24ae..d161d44b 100644 --- a/source/datastructures/sparsedistancematrix.cpp +++ b/source/datastructures/sparsedistancematrix.cpp @@ -146,7 +146,7 @@ ull SparseDistanceMatrix::getSmallestCell(ull& row){ } } - //random_shuffle(mins.begin(), mins.end()); //randomize the order of the iterators in the mins vector + random_shuffle(mins.begin(), mins.end()); //randomize the order of the iterators in the mins vector row = mins[0].row; ull col = mins[0].col; From 0596b5e0d54e1cb8cbaefe985e14e3bd8d815b6e Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 24 Aug 2015 14:00:59 -0400 Subject: [PATCH 032/135] Adds format parameter to unique.seqs Fixes typo bug Completes Issue #125 --- source/commands/aligncommand.cpp | 2 +- source/commands/deconvolutecommand.cpp | 80 +++++++++++++++++++++++++--------- source/commands/lefsecommand.cpp | 2 +- source/datastructures/counttable.cpp | 22 ++++++++++ source/datastructures/counttable.h | 3 +- 5 files changed, 85 insertions(+), 24 deletions(-) diff --git a/source/commands/aligncommand.cpp b/source/commands/aligncommand.cpp index 5205be36..f7911b8b 100644 --- a/source/commands/aligncommand.cpp +++ b/source/commands/aligncommand.cpp @@ -367,7 +367,7 @@ int AlignCommand::execute(){ //delete accnos file if its blank else report to user if (m->isBlank(accnosFileName)) { m->mothurRemove(accnosFileName); hasAccnos = false; } else { - m->mothurOut("Some of you sequences generated alignments that eliminated too many bases, a list is provided in " + accnosFileName + "."); + m->mothurOut("Some of your sequences generated alignments that eliminated too many bases, a list is provided in " + accnosFileName + "."); if (!flip) { m->mothurOut(" If you set the flip parameter to true mothur will try aligning the reverse compliment as well."); }else{ m->mothurOut(" If the reverse compliment proved to be better it was reported."); } diff --git a/source/commands/deconvolutecommand.cpp b/source/commands/deconvolutecommand.cpp index f288d59c..7c115fe0 100644 --- a/source/commands/deconvolutecommand.cpp +++ b/source/commands/deconvolutecommand.cpp @@ -38,7 +38,7 @@ string DeconvoluteCommand::getHelpString(){ helpString += "The unique.seqs command parameters are fasta, name, count and format. fasta is required, unless there is a valid current fasta file.\n"; helpString += "The name parameter is used to provide an existing name file associated with the fasta file. \n"; helpString += "The count parameter is used to provide an existing count file associated with the fasta file. \n"; - helpString += "The format parameter is used to indicate what type of file you want outputted. Choices are name and count, default=name.\n"; + helpString += "The format parameter is used to indicate what type of file you want outputted. Choices are name and count, default=name unless count file used then default=count.\n"; helpString += "The unique.seqs command should be in the following format: \n"; helpString += "unique.seqs(fasta=yourFastaFile) \n"; return helpString; @@ -168,7 +168,18 @@ DeconvoluteCommand::DeconvoluteCommand(string option) { if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a unique.seqs command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; } - + format = validParameter.validFile(parameters, "format", false); + if(format == "not found"){ + if (countfile != "") { format = "count"; } + else { format = "name"; } + } + + if ((format != "name") && (format != "count")) { + m->mothurOut(format + " is not a valid format option. Options are count or name."); + if (countfile == "") { m->mothurOut("I will use name.\n"); format = "name"; } + else { m->mothurOut("I will use count.\n"); format = "count"; } + } + if (countfile == "") { if (namefile == "") { vector files; files.push_back(fastafile); @@ -189,7 +200,7 @@ int DeconvoluteCommand::execute() { try { if (abort == true) { if (calledHelp) { return 0; } return 2; } - + //prepare filenames and open files map variables; variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(fastafile)); @@ -234,6 +245,7 @@ int DeconvoluteCommand::execute() { set nameInFastaFile; //for sanity checking set::iterator itname; vector nameFileOrder; + CountTable newCt; int count = 0; while (!in.eof()) { @@ -260,13 +272,23 @@ int DeconvoluteCommand::execute() { if (itNames == nameMap.end()) { //namefile and fastafile do not match m->mothurOut("[ERROR]: " + seq.getName() + " is in your fasta file, and not in your namefile, please correct."); m->mothurOutEndLine(); }else { - sequenceStrings[seq.getAligned()] = itNames->second; - nameFileOrder.push_back(seq.getAligned()); + if (format == "name") { sequenceStrings[seq.getAligned()] = itNames->second; nameFileOrder.push_back(seq.getAligned()); + }else { newCt.push_back(seq.getName(), m->getNumNames(itNames->second)); sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); } } - }else if (countfile != "") { - ct.getNumSeqs(seq.getName()); //checks to make sure seq is in table - sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); - }else { sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); } + }else if (countfile != "") { + if (format == "name") { + int numSeqs = ct.getNumSeqs(seq.getName()); + string expandedName = seq.getName()+"_0"; + for (int i = 1; i < numSeqs; i++) { expandedName += "," + seq.getName() + "_" + toString(i); } + sequenceStrings[seq.getAligned()] = expandedName; nameFileOrder.push_back(seq.getAligned()); + }else { + ct.getNumSeqs(seq.getName()); //checks to make sure seq is in table + sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); + } + }else { + if (format == "name") { sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); } + else { newCt.push_back(seq.getName()); sequenceStrings[seq.getAligned()] = seq.getName(); nameFileOrder.push_back(seq.getAligned()); } + } }else { //this is a dup if (namefile != "") { itNames = nameMap.find(seq.getName()); @@ -274,16 +296,26 @@ int DeconvoluteCommand::execute() { if (itNames == nameMap.end()) { //namefile and fastafile do not match m->mothurOut("[ERROR]: " + seq.getName() + " is in your fasta file, and not in your namefile, please correct."); m->mothurOutEndLine(); }else { - sequenceStrings[seq.getAligned()] += "," + itNames->second; + if (format == "name") { sequenceStrings[seq.getAligned()] += "," + itNames->second; } + else { int currentReps = newCt.getNumSeqs(itStrings->second); newCt.setNumSeqs(itStrings->second, currentReps+(m->getNumNames(itNames->second))); } } - }else if (countfile != "") { - int num = ct.getNumSeqs(seq.getName()); //checks to make sure seq is in table - if (num != 0) { //its in the table - ct.mergeCounts(itStrings->second, seq.getName()); //merges counts and saves in uniques name + }else if (countfile != "") { + if (format == "name") { + int numSeqs = ct.getNumSeqs(seq.getName()); + string expandedName = seq.getName()+"_0"; + for (int i = 1; i < numSeqs; i++) { expandedName += "," + seq.getName() + "_" + toString(i); } + sequenceStrings[seq.getAligned()] += "," + expandedName; + }else { + int num = ct.getNumSeqs(seq.getName()); //checks to make sure seq is in table + if (num != 0) { //its in the table + ct.mergeCounts(itStrings->second, seq.getName()); //merges counts and saves in uniques name + } } - }else { sequenceStrings[seq.getAligned()] += "," + seq.getName(); } + }else { + if (format == "name") { sequenceStrings[seq.getAligned()] += "," + seq.getName(); } + else { int currentReps = newCt.getNumSeqs(itStrings->second); newCt.setNumSeqs(itStrings->second, currentReps+1); } + } } - count++; } @@ -298,11 +330,14 @@ int DeconvoluteCommand::execute() { outFasta.close(); if (m->control_pressed) { m->mothurRemove(outFastaFile); return 0; } - + //print new names file ofstream outNames; - if (countfile == "") { m->openOutputFile(outNameFile, outNames); outputNames.push_back(outNameFile); outputTypes["name"].push_back(outNameFile); } - else { m->openOutputFile(outCountFile, outNames); ct.printHeaders(outNames); outputTypes["count"].push_back(outCountFile); outputNames.push_back(outCountFile); } + if (format == "name") { m->openOutputFile(outNameFile, outNames); outputNames.push_back(outNameFile); outputTypes["name"].push_back(outNameFile); } + else { m->openOutputFile(outCountFile, outNames); outputTypes["count"].push_back(outCountFile); outputNames.push_back(outCountFile); } + + if ((countfile != "") && (format == "count")) { ct.printHeaders(outNames); } + else if ((countfile == "") && (format == "count")) { newCt.printHeaders(outNames); } for (int i = 0; i < nameFileOrder.size(); i++) { if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(outFastaFile); outNames.close(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } @@ -310,7 +345,7 @@ int DeconvoluteCommand::execute() { itStrings = sequenceStrings.find(nameFileOrder[i]); if (itStrings != sequenceStrings.end()) { - if (countfile == "") { + if (format == "name") { //get rep name int pos = (itStrings->second).find_first_of(','); @@ -319,7 +354,10 @@ int DeconvoluteCommand::execute() { }else { outNames << (itStrings->second).substr(0, pos) << '\t' << itStrings->second << endl; } - }else { ct.printSeq(outNames, itStrings->second); } + }else { + if (countfile != "") { ct.printSeq(outNames, itStrings->second); } + else if (format == "count") { newCt.printSeq(outNames, itStrings->second); } + } }else{ m->mothurOut("[ERROR]: mismatch in namefile print."); m->mothurOutEndLine(); m->control_pressed = true; } } outNames.close(); diff --git a/source/commands/lefsecommand.cpp b/source/commands/lefsecommand.cpp index 0be194bf..d6019bf5 100644 --- a/source/commands/lefsecommand.cpp +++ b/source/commands/lefsecommand.cpp @@ -357,7 +357,7 @@ int LefseCommand::execute(){ m->mothurOut("Output File Names: "); m->mothurOutEndLine(); for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } m->mothurOutEndLine(); - srand(time(NULL)); + srand((unsigned)time(NULL)); return 0; } diff --git a/source/datastructures/counttable.cpp b/source/datastructures/counttable.cpp index 11fda480..9cc8bc7e 100644 --- a/source/datastructures/counttable.cpp +++ b/source/datastructures/counttable.cpp @@ -650,6 +650,28 @@ int CountTable::getNumSeqs(string seqName) { } } /************************************************************/ +//set total number of seqs represented by seq +int CountTable::setNumSeqs(string seqName, int abund) { + try { + + map::iterator it = indexNameMap.find(seqName); + if (it == indexNameMap.end()) { + m->mothurOut("[ERROR]: " + seqName + " is not in your count table. Please correct.\n"); m->control_pressed = true; return -1; + }else { + int diff = totals[it->second] - abund; + totals[it->second] = abund; + total-=diff; + } + + return 0; + } + catch(exception& e) { + m->errorOut(e, "CountTable", "getNumSeqs"); + exit(1); + } +} + +/************************************************************/ //returns unique index for sequence like get in NameAssignment int CountTable::get(string seqName) { try { diff --git a/source/datastructures/counttable.h b/source/datastructures/counttable.h index c0ced354..66f0fb3d 100644 --- a/source/datastructures/counttable.h +++ b/source/datastructures/counttable.h @@ -77,7 +77,8 @@ class CountTable { vector getGroupCounts(string); //returns group counts for a seq passed in, if no group info is in file vector is blank. Order is the same as the groups returned by getGroups function. int getGroupCount(string, string); //returns number of seqs for that group for that seq int getGroupCount(string); // returns total seqs for that group - int getNumSeqs(string); //returns total seqs for that seq, 0 if not found + int getNumSeqs(string); //returns total seqs for that seq, 0 if not found + int setNumSeqs(string, int); //set total seqs for that seq, return -1 if not found int getNumSeqs() { return total; } //return total number of seqs int getNumUniqueSeqs() { return uniques; } //return number of unique/representative seqs int getGroupIndex(string); //returns index in getGroupCounts vector of specific group From 7797adfabb8ce04b8788f143eca0033722d2b82a Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 24 Aug 2015 14:36:28 -0400 Subject: [PATCH 033/135] Adds method parameter to constructor merge.groups --- source/commands/mergegroupscommand.cpp | 7 +++++++ source/commands/mergegroupscommand.h | 2 +- 2 files changed, 8 insertions(+), 1 deletion(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index 2cce3e1d..fe819a09 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -18,6 +18,7 @@ vector MergeGroupsCommand::setParameters(){ CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "sharedGroup", "none","group",false,false,true); parameters.push_back(pgroup); CommandParameter pcount("count", "InputTypes", "", "", "CountGroup", "sharedGroup", "none","count",false,false,true); parameters.push_back(pcount); CommandParameter pdesign("design", "InputTypes", "", "", "none", "none", "none","",false,true,true); parameters.push_back(pdesign); + CommandParameter pmethod("method", "Multiple", "sum-average-median", "sum", "", "", "","",false,false, true); parameters.push_back(pmethod); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pgroups("groups", "String", "", "", "", "", "","",false,false); parameters.push_back(pgroups); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); @@ -41,6 +42,8 @@ string MergeGroupsCommand::getHelpString(){ helpString += "The design parameter allows you to assign your groups to sets. It is required. \n"; helpString += "The groups parameter allows you to specify which of the groups in your shared or group file you would like included. The group names are separated by dashes. By default all groups are selected.\n"; helpString += "The label parameter allows you to select what distance levels you would like, and are also separated by dashes.\n"; + helpString += "The groups parameter allows you to select groups you would like, and are also separated by dashes.\n"; + helpString += "The method parameter allows you to select method you would like to use to merge the groups. Options are sum, average and median. Default=sum.\n"; helpString += "The merge.groups command should be in the following format: merge.groups(design=yourDesignFile, shared=yourSharedFile).\n"; helpString += "Example merge.groups(design=temp.design, groups=A-B-C, shared=temp.shared).\n"; helpString += "The default value for groups is all the groups in your sharedfile, and all labels in your inputfile will be used.\n"; @@ -197,6 +200,10 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { m->splitAtDash(groups, Groups); m->setGroups(Groups); + method = validParameter.validFile(parameters, "method", false); if(method == "not found"){ output = "sum"; } + + if ((method != "sum") && (method != "average") && (method != "median")) { m->mothurOut(method + " is not a valid method. Options are sum, average and median. I will use sum."); m->mothurOutEndLine(); method = "sum"; } + if ((groupfile != "") && (countfile != "")) { m->mothurOut("[ERROR]: you may only use one of the following: group or count."); m->mothurOutEndLine(); abort=true; } diff --git a/source/commands/mergegroupscommand.h b/source/commands/mergegroupscommand.h index a4ade88d..dfcbf542 100644 --- a/source/commands/mergegroupscommand.h +++ b/source/commands/mergegroupscommand.h @@ -45,7 +45,7 @@ class MergeGroupsCommand : public Command { bool abort, allLines, pickedGroups; set labels; //holds labels to be used - string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile, countfile; + string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile, countfile, method; vector Groups, outputNames; int process(vector&, ofstream&); From a3659c49316686ed8bef474cfe058fd394765787 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 24 Aug 2015 15:14:37 -0400 Subject: [PATCH 034/135] Adds sum, average and median functions to mothurOut --- source/commands/mergegroupscommand.cpp | 94 ++++++++++++++++++++++++---------- source/commands/mergegroupscommand.h | 1 + source/mothurout.cpp | 60 ++++++++++++++++++++++ source/mothurout.h | 3 ++ 4 files changed, 130 insertions(+), 28 deletions(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index fe819a09..9ac4e013 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -200,7 +200,7 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { m->splitAtDash(groups, Groups); m->setGroups(Groups); - method = validParameter.validFile(parameters, "method", false); if(method == "not found"){ output = "sum"; } + method = validParameter.validFile(parameters, "method", false); if(method == "not found"){ method = "sum"; } if ((method != "sum") && (method != "average") && (method != "median")) { m->mothurOut(method + " is not a valid method. Options are sum, average and median. I will use sum."); m->mothurOutEndLine(); method = "sum"; } @@ -283,34 +283,49 @@ int MergeGroupsCommand::process(vector& thisLookUp, ofstrea map merged; map::iterator it; + map > clearGroupAbunds; + map >::iterator itAbunds; + + for (int i = 0; i < thisLookUp.size(); i++) { + if (m->control_pressed) { return 0; } + //what grouping does this group belong to + string grouping = designMap->get(thisLookUp[i]->getGroup()); + if (grouping == "not found") { m->mothurOut("[ERROR]: " + thisLookUp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } + else { + //do we already have a member of this grouping? + it = merged.find(grouping); + + if (it == merged.end()) { //nope, so create it + merged[grouping] = *thisLookUp[i]; + merged[grouping].setGroup(grouping); + vector temp; + clearGroupAbunds[grouping] = temp; + } + } + } + + + for (int j = 0; j < thisLookUp[0]->getNumBins(); j++) { + if (m->control_pressed) { return 0; } + + map > otusGroupAbunds = clearGroupAbunds; + for (int i = 0; i < thisLookUp.size(); i++) { + + string grouping = designMap->get(thisLookUp[i]->getGroup()); + if (grouping == "not found") { m->mothurOut("[ERROR]: " + thisLookUp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } + else { + otusGroupAbunds[grouping].push_back(thisLookUp[i]->getAbundance(j)); + } + } + + for (itAbunds = otusGroupAbunds.begin(); itAbunds != otusGroupAbunds.end(); itAbunds++) { + int abund = mergeAbund(itAbunds->second); + merged[itAbunds->first].set(j, abund, itAbunds->first); + } + } - for (int i = 0; i < thisLookUp.size(); i++) { - - if (m->control_pressed) { return 0; } - - //what grouping does this group belong to - string grouping = designMap->get(thisLookUp[i]->getGroup()); - if (grouping == "not found") { m->mothurOut("[ERROR]: " + thisLookUp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } - - else { - //do we already have a member of this grouping? - it = merged.find(grouping); - - if (it == merged.end()) { //nope, so create it - merged[grouping] = *thisLookUp[i]; - merged[grouping].setGroup(grouping); - }else { //yes, merge it - - for (int j = 0; j < thisLookUp[i]->getNumBins(); j++) { - int abund = (it->second).getAbundance(j); - abund += thisLookUp[i]->getAbundance(j); - - (it->second).set(j, abund, grouping); - } - } - } - } - + + //print new file for (it = merged.begin(); it != merged.end(); it++) { out << (it->second).getLabel() << '\t' << it->first << '\t'; @@ -584,5 +599,28 @@ int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ } //********************************************************************************************************************** +int MergeGroupsCommand::mergeAbund(vector){ + try { + int abund = 0; + + if (method == "sum") { + + }else if (method == "average") { + + }else if (method == "median") { + + }else { + m->mothurOut("[ERROR]: Invalid method. \n"); m->control_pressed = true; return 0; + } + + return abund; + } + catch(exception& e) { + m->errorOut(e, "MergeGroupsCommand", "mergeAbund"); + exit(1); + } +} +//********************************************************************************************************************** + diff --git a/source/commands/mergegroupscommand.h b/source/commands/mergegroupscommand.h index dfcbf542..0d867d60 100644 --- a/source/commands/mergegroupscommand.h +++ b/source/commands/mergegroupscommand.h @@ -52,6 +52,7 @@ class MergeGroupsCommand : public Command { int processSharedFile(DesignMap*&); int processGroupFile(DesignMap*&); int processCountFile(DesignMap*&); + int mergeAbund(vector); }; #endif diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 2f3ddda2..58a28acc 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -3729,6 +3729,66 @@ double MothurOut::median(vector x) { } } /***********************************************************************/ +int MothurOut::median(vector x) { + try { + double value = 0; + + if (x.size() == 0) { } //error + else { + //For example, if a < b < c, then the median of the list {a, b, c} is b, and, if a < b < c < d, then the median of the list {a, b, c, d} is the mean of b and c; i.e., it is (b + c)/2. + sort(x.begin(), x.end()); + //is x.size even? + if ((x.size()%2) == 0) { //size() is even. median = average of 2 midpoints + int midIndex1 = (x.size()/2)-1; + int midIndex2 = (x.size()/2); + value = (x[midIndex1]+ x[midIndex2]) / 2.0; + }else { + int midIndex = (x.size()/2); + value = x[midIndex]; + } + } + return (int) value; + } + catch(exception& e) { + errorOut(e, "MothurOut", "median - int"); + exit(1); + } +} +/***********************************************************************/ +int MothurOut::average(vector x) { + try { + int value = 0; + + for (int i = 0; i < x.size(); i++) { + if (control_pressed) { break; } + value += x[i]; + } + + return ((int) value / x.size()); + } + catch(exception& e) { + errorOut(e, "MothurOut", "average - int"); + exit(1); + } +} +/***********************************************************************/ +int MothurOut::sum(vector x) { + try { + int value = 0; + + for (int i = 0; i < x.size(); i++) { + if (control_pressed) { break; } + value += x[i]; + } + + return value; + } + catch(exception& e) { + errorOut(e, "MothurOut", "average - int"); + exit(1); + } +} +/***********************************************************************/ int MothurOut::factorial(int num){ try { int total = 1; diff --git a/source/mothurout.h b/source/mothurout.h index dc30b0a1..39d164b5 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -199,6 +199,9 @@ class MothurOut { float roundDist(float, int); unsigned int fromBase36(string); double median(vector); + int median(vector); + int average(vector); + int sum(vector); int getRandomIndex(int); //highest double getStandardDeviation(vector&); vector getStandardDeviation(vector< vector >&); From 3c9438cc61af89e485c86f6045efad12213e1c15 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 24 Aug 2015 16:35:03 -0400 Subject: [PATCH 035/135] Adding sum, median and average to count option Issue #105 --- source/commands/mergegroupscommand.cpp | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index 9ac4e013..34a746b8 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -546,10 +546,11 @@ int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ //create new table CountTable newTable; vector treatments = designMap->getCategory(); - map clearedMap; + map > clearedMap; for (int i = 0; i < treatments.size(); i++) { newTable.addGroup(treatments[i]); - clearedMap[treatments[i]] = 0; + vector temp; + clearedMap[treatments[i]] = temp; } treatments = newTable.getNamesOfGroups(); @@ -559,18 +560,17 @@ int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ if (m->control_pressed) { break; } vector thisSeqsCounts = countTable.getGroupCounts(namesOfSeqs[i]); - map thisSeqsMap = clearedMap; + map > thisSeqsMap = clearedMap; for (int j = 0; j < numGroups; j++) { - if (thisSeqsCounts[j] != 0) { //abundance for this group, not sure if this would run faster without if. Time to lookup treatment on counts we don't care about vs. asking if each time. - thisSeqsMap[designMap->get(nameGroups[j])] += thisSeqsCounts[j]; // - } + thisSeqsMap[designMap->get(nameGroups[j])].push_back(thisSeqsCounts[j]); } //create new counts for seq for new table vector newCounts; for (int j = 0; j < treatments.size(); j++){ - newCounts.push_back(thisSeqsMap[treatments[j]]); //order matters, add in count for each treatment in new table. + int abund = mergeAbund(thisSeqsMap[treatments[j]]); + newCounts.push_back(abund); //order matters, add in count for each treatment in new table. } //add seq to new table @@ -599,16 +599,16 @@ int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ } //********************************************************************************************************************** -int MergeGroupsCommand::mergeAbund(vector){ +int MergeGroupsCommand::mergeAbund(vector values){ try { int abund = 0; if (method == "sum") { - + abund = m->sum(values); }else if (method == "average") { - + abund = m->average(values); }else if (method == "median") { - + abund = m->median(values); }else { m->mothurOut("[ERROR]: Invalid method. \n"); m->control_pressed = true; return 0; } From f320ece7c0a8c3d61c0ca1247b23b1073e4eaa4d Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 25 Aug 2015 10:48:45 -0400 Subject: [PATCH 036/135] Adds file conditions to merge.groups constructor Issue #105 --- source/commands/mergegroupscommand.cpp | 36 +++++++++++++++++++++++++++++++--- source/commands/mergegroupscommand.h | 2 +- 2 files changed, 34 insertions(+), 4 deletions(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index 34a746b8..64f51d0c 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -16,8 +16,9 @@ vector MergeGroupsCommand::setParameters(){ try { CommandParameter pshared("shared", "InputTypes", "", "", "none", "sharedGroup", "none","shared",false,false,true); parameters.push_back(pshared); CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "sharedGroup", "none","group",false,false,true); parameters.push_back(pgroup); - CommandParameter pcount("count", "InputTypes", "", "", "CountGroup", "sharedGroup", "none","count",false,false,true); parameters.push_back(pcount); + CommandParameter pcount("count", "InputTypes", "", "", "CountGroup", "sharedGroup", "countfasta","count",false,false,true); parameters.push_back(pcount); CommandParameter pdesign("design", "InputTypes", "", "", "none", "none", "none","",false,true,true); parameters.push_back(pdesign); + CommandParameter pfasta("fasta", "InputTypes", "", "", "none", "none", "countfasta","fasta",false,false,true); parameters.push_back(pfasta); CommandParameter pmethod("method", "Multiple", "sum-average-median", "sum", "", "", "","",false,false, true); parameters.push_back(pmethod); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pgroups("groups", "String", "", "", "", "", "","",false,false); parameters.push_back(pgroups); @@ -38,8 +39,9 @@ vector MergeGroupsCommand::setParameters(){ string MergeGroupsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The merge.groups command input files are shared, group, countfile and a design file. It reads the design file and merges the groups in the other files accordingly.\n"; + helpString += "The merge.groups command input files are shared, group, count, fasta and a design file. It reads the design file and merges the groups in the other files accordingly.\n"; helpString += "The design parameter allows you to assign your groups to sets. It is required. \n"; + helpString += "The fasta parameter allows you to provide a fasta file associated with your count file. This is used if you are using the median method, so that sequences that are entirely removed from the counttable will also be removed from the fasta file. \n"; helpString += "The groups parameter allows you to specify which of the groups in your shared or group file you would like included. The group names are separated by dashes. By default all groups are selected.\n"; helpString += "The label parameter allows you to select what distance levels you would like, and are also separated by dashes.\n"; helpString += "The groups parameter allows you to select groups you would like, and are also separated by dashes.\n"; @@ -64,6 +66,7 @@ string MergeGroupsCommand::getOutputPattern(string type) { if (type == "shared") { pattern = "[filename],merge,[extension]"; } else if (type == "group") { pattern = "[filename],merge,[extension]"; } else if (type == "count") { pattern = "[filename],merge,[extension]"; } + else if (type == "fasta") { pattern = "[filename],merge,[extension]"; } else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } return pattern; @@ -82,9 +85,10 @@ MergeGroupsCommand::MergeGroupsCommand(){ outputTypes["shared"] = tempOutNames; outputTypes["group"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["fasta"] = tempOutNames; } catch(exception& e) { - m->errorOut(e, "MergeGroupsCommand", "MetaStatsCommand"); + m->errorOut(e, "MergeGroupsCommand", "MergeGroupsCommand"); exit(1); } } @@ -158,6 +162,14 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["count"] = inputDir + it->second; } } + + it = parameters.find("fasta"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["fasta"] = inputDir + it->second; } + } } @@ -185,6 +197,12 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { if (countfile == "not open") { abort = true; countfile = ""; } else if (countfile == "not found") { countfile = ""; } else { m->setCountTableFile(countfile); } + + fastafile = validParameter.validFile(parameters, "fasta", true); + if (fastafile == "not open") { abort = true; countfile = ""; } + else if (fastafile == "not found") { fastafile = ""; } + else { m->setFastaFile(fastafile); } + //check for optional parameter and set defaults // ...at some point should added some additional type checking... @@ -204,6 +222,7 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { if ((method != "sum") && (method != "average") && (method != "median")) { m->mothurOut(method + " is not a valid method. Options are sum, average and median. I will use sum."); m->mothurOutEndLine(); method = "sum"; } + if ((groupfile != "") && (countfile != "")) { m->mothurOut("[ERROR]: you may only use one of the following: group or count."); m->mothurOutEndLine(); abort=true; } @@ -224,6 +243,17 @@ MergeGroupsCommand::MergeGroupsCommand(string option) { } } } + + if ((countfile == "") && (fastafile != "")) { m->mothurOut("[ERROR]: You may only use the fasta file with the count file, quitting."); m->mothurOutEndLine(); abort=true; } + else if ((countfile != "") && (method == "average")) { m->mothurOut("You may not use the average method with the count file. I will use the sum method."); m->mothurOutEndLine(); method = "sum"; } + else if ((countfile != "") && (method == "median") && (fastafile == "")) { + fastafile = m->getFastaFile(); + if (fastafile != "") { m->mothurOut("Using " + fastafile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } + else { + m->mothurOut("[ERROR]: Fasta file is required with the median method and a count file so that sequences removed from your count table can also be removed from your fasta file to avoid downstream file mismatches, quitting.\n"); abort=true; + } + } + } } diff --git a/source/commands/mergegroupscommand.h b/source/commands/mergegroupscommand.h index 0d867d60..212c3516 100644 --- a/source/commands/mergegroupscommand.h +++ b/source/commands/mergegroupscommand.h @@ -45,7 +45,7 @@ class MergeGroupsCommand : public Command { bool abort, allLines, pickedGroups; set labels; //holds labels to be used - string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile, countfile, method; + string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile, countfile, method, fastafile; vector Groups, outputNames; int process(vector&, ofstream&); From 0b90002b1320e82dd7d8d6d78c8d3848df856d03 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 25 Aug 2015 14:11:04 -0400 Subject: [PATCH 037/135] Checks treatments are the same size for median/average Issue #105 --- source/commands/mergegroupscommand.cpp | 16 +++++++++++++++- 1 file changed, 15 insertions(+), 1 deletion(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index 64f51d0c..a08b85ac 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -270,7 +270,21 @@ int MergeGroupsCommand::execute(){ if (abort == true) { if (calledHelp) { return 0; } return 2; } designMap = new DesignMap(designfile); - + + if (method != "sum") { + string defaultClass = designMap->getDefaultClass(); + vector treatments = designMap->getCategory(defaultClass); + set numGroupsPerTreatment; + for (int i = 0; i < treatments.size(); i++) { + if (m->control_pressed) { break; } + map > checkTreatments; + vector temp; temp.push_back(treatments[i]); + checkTreatments[defaultClass] = temp; + numGroupsPerTreatment.insert(designMap->getNumUnique(checkTreatments)); + } + if (numGroupsPerTreatment.size() > 1) { m->mothurOut("[ERROR]: The median and average methods require you to have the same number of sequences in each treatment, quitting.\n"); delete designMap; return 0; } + } + if (groupfile != "") { processGroupFile(designMap); } if (sharedfile != "") { processSharedFile(designMap); } if (countfile != "") { processCountFile(designMap); } From 44ac9e93fae103b9c2e5de91eb87e54c3734e6ab Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 8 Sep 2015 13:53:19 -0400 Subject: [PATCH 038/135] Work on merge.groups methods Issue #105 Bug Fix: missing tab in header count.seqs large=t --- source/commands/countseqscommand.cpp | 2 +- source/commands/mergegroupscommand.cpp | 212 +++++++++++++++++----- source/commands/mergegroupscommand.h | 2 + source/datastructures/sharedrabundfloatvector.cpp | 26 +-- source/datastructures/sharedrabundfloatvector.h | 5 +- source/datastructures/sharedrabundvector.cpp | 26 +-- source/datastructures/sharedrabundvector.h | 5 +- 7 files changed, 199 insertions(+), 79 deletions(-) diff --git a/source/commands/countseqscommand.cpp b/source/commands/countseqscommand.cpp index 4bb3cd6c..79278e30 100644 --- a/source/commands/countseqscommand.cpp +++ b/source/commands/countseqscommand.cpp @@ -768,7 +768,7 @@ unsigned long long CountSeqsCommand::processLarge(string outputFileName){ m->mothurRemove(outfile); m->mothurRemove(outName); in2.close(); - for (map::iterator it = indexToGroup.begin(); it != indexToGroup.end(); it++) { out << it->second << '\t'; } + for (map::iterator it = indexToGroup.begin(); it != indexToGroup.end(); it++) { out << '\t' << it->second; } out << endl; for (int i = 0; i < nameMapCount.size(); i++) { string totalsLine = ""; diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index a08b85ac..9c8c67c7 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -324,58 +324,68 @@ int MergeGroupsCommand::execute(){ int MergeGroupsCommand::process(vector& thisLookUp, ofstream& out){ try { - - map merged; - map::iterator it; - map > clearGroupAbunds; - map >::iterator itAbunds; - - for (int i = 0; i < thisLookUp.size(); i++) { - if (m->control_pressed) { return 0; } - //what grouping does this group belong to - string grouping = designMap->get(thisLookUp[i]->getGroup()); - if (grouping == "not found") { m->mothurOut("[ERROR]: " + thisLookUp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } - else { - //do we already have a member of this grouping? - it = merged.find(grouping); - - if (it == merged.end()) { //nope, so create it - merged[grouping] = *thisLookUp[i]; - merged[grouping].setGroup(grouping); - vector temp; - clearGroupAbunds[grouping] = temp; - } - } - } - - - for (int j = 0; j < thisLookUp[0]->getNumBins(); j++) { - if (m->control_pressed) { return 0; } + if (method == "average") { + //create sharedRabundFloatVectors + + //follow code below + + + }else { + map merged; + map::iterator it; + map > clearGroupAbunds; + map >::iterator itAbunds; - map > otusGroupAbunds = clearGroupAbunds; for (int i = 0; i < thisLookUp.size(); i++) { - + if (m->control_pressed) { return 0; } + //what grouping does this group belong to string grouping = designMap->get(thisLookUp[i]->getGroup()); if (grouping == "not found") { m->mothurOut("[ERROR]: " + thisLookUp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } else { - otusGroupAbunds[grouping].push_back(thisLookUp[i]->getAbundance(j)); + //do we already have a member of this grouping? + it = merged.find(grouping); + + if (it == merged.end()) { //nope, so create it + merged[grouping] = *thisLookUp[i]; + merged[grouping].setGroup(grouping); + vector temp; + clearGroupAbunds[grouping] = temp; + } } } - for (itAbunds = otusGroupAbunds.begin(); itAbunds != otusGroupAbunds.end(); itAbunds++) { - int abund = mergeAbund(itAbunds->second); - merged[itAbunds->first].set(j, abund, itAbunds->first); + for (int j = 0; j < thisLookUp[0]->getNumBins(); j++) { + if (m->control_pressed) { return 0; } + + map > otusGroupAbunds = clearGroupAbunds; + for (int i = 0; i < thisLookUp.size(); i++) { + + string grouping = designMap->get(thisLookUp[i]->getGroup()); + if (grouping == "not found") { m->mothurOut("[ERROR]: " + thisLookUp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } + else { + otusGroupAbunds[grouping].push_back(thisLookUp[i]->getAbundance(j)); + } + } + + for (itAbunds = otusGroupAbunds.begin(); itAbunds != otusGroupAbunds.end(); itAbunds++) { + int abund = mergeAbund(itAbunds->second); + merged[itAbunds->first].set(j, abund, itAbunds->first); + } + } + + if (method == "median") { + vector temp; + for (it = merged.begin(); it != merged.end(); it++) { temp.push_back(&(it->second)); } + eliminateZeroOTUS(temp); + } + + //print new file + for (it = merged.begin(); it != merged.end(); it++) { + if (!m->printedSharedHeaders) { (it->second).printHeaders(out); } + out << (it->second).getLabel() << '\t' << it->first << '\t'; + (it->second).print(out); } } - - - - //print new file - for (it = merged.begin(); it != merged.end(); it++) { - out << (it->second).getLabel() << '\t' << it->first << '\t'; - (it->second).print(out); - } - return 0; } @@ -416,8 +426,6 @@ int MergeGroupsCommand::processSharedFile(DesignMap*& designMap){ if(allLines == 1 || labels.count(lookup[0]->getLabel()) == 1){ m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine(); - - if (!m->printedSharedHeaders) { lookup[0]->printHeaders(out); } process(lookup, out); processedLabels.insert(lookup[0]->getLabel()); @@ -431,7 +439,6 @@ int MergeGroupsCommand::processSharedFile(DesignMap*& designMap){ lookup = input.getSharedRAbundVectors(lastLabel); m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine(); - if (!m->printedSharedHeaders) { lookup[0]->printHeaders(out); } process(lookup, out); processedLabels.insert(lookup[0]->getLabel()); @@ -472,8 +479,6 @@ int MergeGroupsCommand::processSharedFile(DesignMap*& designMap){ lookup = input.getSharedRAbundVectors(lastLabel); m->mothurOut(lookup[0]->getLabel()); m->mothurOutEndLine(); - - if (!m->printedSharedHeaders) { lookup[0]->printHeaders(out); } process(lookup, out); for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } @@ -665,6 +670,119 @@ int MergeGroupsCommand::mergeAbund(vector values){ } } //********************************************************************************************************************** +int MergeGroupsCommand::eliminateZeroOTUS(vector& thislookup) { + try { + + vector newLookup; + for (int i = 0; i < thislookup.size(); i++) { + SharedRAbundVector* temp = new SharedRAbundVector(); + temp->setLabel(thislookup[i]->getLabel()); + temp->setGroup(thislookup[i]->getGroup()); + newLookup.push_back(temp); + } + + //for each bin + vector newBinLabels; + string snumBins = toString(thislookup[0]->getNumBins()); + for (int i = 0; i < thislookup[0]->getNumBins(); i++) { + if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; } + + //look at each sharedRabund and make sure they are not all zero + bool allZero = true; + for (int j = 0; j < thislookup.size(); j++) { + if (thislookup[j]->getAbundance(i) != 0) { allZero = false; break; } + } + + //if they are not all zero add this bin + if (!allZero) { + for (int j = 0; j < thislookup.size(); j++) { + newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); + } + //if there is a bin label use it otherwise make one + string binLabel = "Otu"; + string sbinNumber = toString(i+1); + if (sbinNumber.length() < snumBins.length()) { + int diff = snumBins.length() - sbinNumber.length(); + for (int h = 0; h < diff; h++) { binLabel += "0"; } + } + binLabel += sbinNumber; + if (i < m->currentSharedBinLabels.size()) { binLabel = m->currentSharedBinLabels[i]; } + + newBinLabels.push_back(binLabel); + } + } + + for (int j = 0; j < thislookup.size(); j++) { delete thislookup[j]; } + thislookup.clear(); + + thislookup = newLookup; + m->currentSharedBinLabels = newBinLabels; + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "MergeGroupsCommand", "eliminateZeroOTUS"); + exit(1); + } +} +//********************************************************************************************************************** +int MergeGroupsCommand::eliminateZeroOTUS(vector& thislookup) { + try { + + vector newLookup; + for (int i = 0; i < thislookup.size(); i++) { + SharedRAbundFloatVector* temp = new SharedRAbundFloatVector(); + temp->setLabel(thislookup[i]->getLabel()); + temp->setGroup(thislookup[i]->getGroup()); + newLookup.push_back(temp); + } + + //for each bin + vector newBinLabels; + string snumBins = toString(thislookup[0]->getNumBins()); + for (int i = 0; i < thislookup[0]->getNumBins(); i++) { + if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; } + + //look at each sharedRabund and make sure they are not all zero + bool allZero = true; + for (int j = 0; j < thislookup.size(); j++) { + if (thislookup[j]->getAbundance(i) != 0) { allZero = false; break; } + } + + //if they are not all zero add this bin + if (!allZero) { + for (int j = 0; j < thislookup.size(); j++) { + newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); + } + //if there is a bin label use it otherwise make one + string binLabel = "Otu"; + string sbinNumber = toString(i+1); + if (sbinNumber.length() < snumBins.length()) { + int diff = snumBins.length() - sbinNumber.length(); + for (int h = 0; h < diff; h++) { binLabel += "0"; } + } + binLabel += sbinNumber; + if (i < m->currentSharedBinLabels.size()) { binLabel = m->currentSharedBinLabels[i]; } + + newBinLabels.push_back(binLabel); + } + } + + for (int j = 0; j < thislookup.size(); j++) { delete thislookup[j]; } + + thislookup = newLookup; + m->currentSharedBinLabels = newBinLabels; + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "MergeGroupsCommand", "eliminateZeroOTUS"); + exit(1); + } +} +//********************************************************************************************************************** diff --git a/source/commands/mergegroupscommand.h b/source/commands/mergegroupscommand.h index 212c3516..8973546d 100644 --- a/source/commands/mergegroupscommand.h +++ b/source/commands/mergegroupscommand.h @@ -53,6 +53,8 @@ class MergeGroupsCommand : public Command { int processGroupFile(DesignMap*&); int processCountFile(DesignMap*&); int mergeAbund(vector); + int eliminateZeroOTUS(vector&); + int eliminateZeroOTUS(vector&); }; #endif diff --git a/source/datastructures/sharedrabundfloatvector.cpp b/source/datastructures/sharedrabundfloatvector.cpp index 77b08be7..a440bfd7 100644 --- a/source/datastructures/sharedrabundfloatvector.cpp +++ b/source/datastructures/sharedrabundfloatvector.cpp @@ -402,7 +402,7 @@ vector SharedRAbundFloatVector::getSharedRAbundFloatVe delete util; - if (remove) { eliminateZeroOTUS(lookup); } + if (remove) { eliminateZeroOTUS(); } return lookup; } @@ -514,33 +514,33 @@ OrderVector SharedRAbundFloatVector::getOrderVector(map* nameMap = N } } //********************************************************************************************************************** -int SharedRAbundFloatVector::eliminateZeroOTUS(vector& thislookup) { +int SharedRAbundFloatVector::eliminateZeroOTUS() { try { vector newLookup; - for (int i = 0; i < thislookup.size(); i++) { + for (int i = 0; i < lookup.size(); i++) { SharedRAbundFloatVector* temp = new SharedRAbundFloatVector(); - temp->setLabel(thislookup[i]->getLabel()); - temp->setGroup(thislookup[i]->getGroup()); + temp->setLabel(lookup[i]->getLabel()); + temp->setGroup(lookup[i]->getGroup()); newLookup.push_back(temp); } //for each bin vector newBinLabels; - string snumBins = toString(thislookup[0]->getNumBins()); - for (int i = 0; i < thislookup[0]->getNumBins(); i++) { + string snumBins = toString(lookup[0]->getNumBins()); + for (int i = 0; i < lookup[0]->getNumBins(); i++) { if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; } //look at each sharedRabund and make sure they are not all zero bool allZero = true; - for (int j = 0; j < thislookup.size(); j++) { - if (thislookup[j]->getAbundance(i) != 0) { allZero = false; break; } + for (int j = 0; j < lookup.size(); j++) { + if (lookup[j]->getAbundance(i) != 0) { allZero = false; break; } } //if they are not all zero add this bin if (!allZero) { - for (int j = 0; j < thislookup.size(); j++) { - newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); + for (int j = 0; j < lookup.size(); j++) { + newLookup[j]->push_back(lookup[j]->getAbundance(i), lookup[j]->getGroup()); } //if there is a bin label use it otherwise make one string binLabel = "Otu"; @@ -556,9 +556,9 @@ int SharedRAbundFloatVector::eliminateZeroOTUS(vector& } } - for (int j = 0; j < thislookup.size(); j++) { delete thislookup[j]; } + for (int j = 0; j < lookup.size(); j++) { delete lookup[j]; } - thislookup = newLookup; + lookup = newLookup; m->currentSharedBinLabels = newBinLabels; return 0; diff --git a/source/datastructures/sharedrabundfloatvector.h b/source/datastructures/sharedrabundfloatvector.h index f8d69a8a..cf387063 100644 --- a/source/datastructures/sharedrabundfloatvector.h +++ b/source/datastructures/sharedrabundfloatvector.h @@ -39,7 +39,7 @@ class SharedRAbundFloatVector : public DataVector { string getGroup(); void setGroup(string); int getGroupIndex(); - void setGroupIndex(int); + void setGroupIndex(int); void set(int, float, string); //OTU, abundance, groupname individualFloat get(int); @@ -67,6 +67,7 @@ class SharedRAbundFloatVector : public DataVector { vector getSharedRAbundFloatVectors(); private: + int eliminateZeroOTUS(); vector data; vector lookup; //GlobalData* globaldata; @@ -77,7 +78,7 @@ class SharedRAbundFloatVector : public DataVector { string group; int index; - int eliminateZeroOTUS(vector&); + }; diff --git a/source/datastructures/sharedrabundvector.cpp b/source/datastructures/sharedrabundvector.cpp index 729035d0..7b7fc934 100644 --- a/source/datastructures/sharedrabundvector.cpp +++ b/source/datastructures/sharedrabundvector.cpp @@ -486,7 +486,7 @@ vector SharedRAbundVector::getSharedRAbundVectors(){ delete util; - if (remove) { eliminateZeroOTUS(lookup); } + if (remove) { eliminateZeroOTUS(); } return lookup; } @@ -496,33 +496,33 @@ vector SharedRAbundVector::getSharedRAbundVectors(){ } } //********************************************************************************************************************** -int SharedRAbundVector::eliminateZeroOTUS(vector& thislookup) { +int SharedRAbundVector::eliminateZeroOTUS() { try { vector newLookup; - for (int i = 0; i < thislookup.size(); i++) { + for (int i = 0; i < lookup.size(); i++) { SharedRAbundVector* temp = new SharedRAbundVector(); - temp->setLabel(thislookup[i]->getLabel()); - temp->setGroup(thislookup[i]->getGroup()); + temp->setLabel(lookup[i]->getLabel()); + temp->setGroup(lookup[i]->getGroup()); newLookup.push_back(temp); } //for each bin vector newBinLabels; - string snumBins = toString(thislookup[0]->getNumBins()); - for (int i = 0; i < thislookup[0]->getNumBins(); i++) { + string snumBins = toString(lookup[0]->getNumBins()); + for (int i = 0; i < lookup[0]->getNumBins(); i++) { if (m->control_pressed) { for (int j = 0; j < newLookup.size(); j++) { delete newLookup[j]; } return 0; } //look at each sharedRabund and make sure they are not all zero bool allZero = true; - for (int j = 0; j < thislookup.size(); j++) { - if (thislookup[j]->getAbundance(i) != 0) { allZero = false; break; } + for (int j = 0; j < lookup.size(); j++) { + if (lookup[j]->getAbundance(i) != 0) { allZero = false; break; } } //if they are not all zero add this bin if (!allZero) { - for (int j = 0; j < thislookup.size(); j++) { - newLookup[j]->push_back(thislookup[j]->getAbundance(i), thislookup[j]->getGroup()); + for (int j = 0; j < lookup.size(); j++) { + newLookup[j]->push_back(lookup[j]->getAbundance(i), lookup[j]->getGroup()); } //if there is a bin label use it otherwise make one @@ -539,9 +539,9 @@ int SharedRAbundVector::eliminateZeroOTUS(vector& thislooku } } - for (int j = 0; j < thislookup.size(); j++) { delete thislookup[j]; } + for (int j = 0; j < lookup.size(); j++) { delete lookup[j]; } - thislookup = newLookup; + lookup = newLookup; m->currentSharedBinLabels = newBinLabels; return 0; diff --git a/source/datastructures/sharedrabundvector.h b/source/datastructures/sharedrabundvector.h index 66471851..e4898882 100644 --- a/source/datastructures/sharedrabundvector.h +++ b/source/datastructures/sharedrabundvector.h @@ -43,7 +43,7 @@ class SharedRAbundVector : public DataVector { string getBinLabel(); void setBinLabel(string); int getGroupIndex(); - void setGroupIndex(int); + void setGroupIndex(int); void set(int, int, string); //OTU, abundance, groupname void setData(vector ); @@ -77,6 +77,7 @@ class SharedRAbundVector : public DataVector { vector getSharedRAbundFloatVectors(vector); private: + int eliminateZeroOTUS(); vector data; vector lookup; //GlobalData* globaldata; @@ -86,8 +87,6 @@ class SharedRAbundVector : public DataVector { int numSeqs; string group; int index; - - int eliminateZeroOTUS(vector&); }; From d9207cd8354b0b72e215043ac42be96c377c27c1 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 10 Sep 2015 11:44:44 -0400 Subject: [PATCH 039/135] Debian patches from Tomasz Issue #157 --- INSTALL.md | 15 +----- Mothur.xcodeproj/project.pbxproj | 4 +- makefile | 29 ++--------- makefile-internal | 98 +++++++++++++++++++++++++++++++++++++ source/commands/catchallcommand.cpp | 18 +++++-- source/uchime_src/mk | 16 +++--- 6 files changed, 128 insertions(+), 52 deletions(-) create mode 100644 makefile-internal diff --git a/INSTALL.md b/INSTALL.md index e93231d1..3cc7f95a 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -1,7 +1,6 @@ #For Unix / Linux / Centos -#Current makefile compatible with Boost 1.58.0 -1. Boost requires some things to installed on your machine already. Most come standard on many flavors on Unix, but you may need to install the devel packages. Install libz, bzip2 and python, if its not on your machine, including zlib-devel, bzip2-devel, python-devel. +1. Boost requires some things to installed on your machine already. Most come standard on many flavors on Unix, but you may need to install the devel packages. Install libz, bzip2 and python, if its not on your machine, including zlib-devel, bzip2-devel. This can be easily done with yum or apt get. 2. Download Boost, http://www.boost.org @@ -11,16 +10,6 @@ ./bootstrap.sh --prefix=/usr/local/ ./b2 install -4. Edit mothur's makefile to indicate your boost installation location. This should match the setting of --prefix in the boost install. - #From the boost install - ./bootstrap.sh --prefix=/usr/local/ - - #Mothur's makefile - BOOST_INCLUDE_DIR="/usr/local/include/" - BOOST_LIBRARY_DIR="/usr/local/lib/" - -5. Copy libz.a into BOOST_LIBRARY_DIR. - -6. Run make. If you get a linking errors, it is likely because the zlib files were not found correctly. You may need to add gzip.cpp and zlib.cpp to the source folder of mothur. They are located in the boost_versionNumber/libs/iostreams/src/gzip.cpp. +4. Run make. If you get a linking errors, it is likely because the zlib files were not found correctly. You may need to add gzip.cpp and zlib.cpp to the source folder of mothur. They are located in the boost_versionNumber/libs/iostreams/src/gzip.cpp. diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 32a65b66..ae30e79d 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -803,6 +803,7 @@ 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testsetseedcommand.cpp; path = testcommands/testsetseedcommand.cpp; sourceTree = ""; }; 4829D9651B8387D0002EEED4 /* testbiominfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = testbiominfocommand.cpp; sourceTree = ""; }; 4829D9661B8387D0002EEED4 /* testbiominfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = testbiominfocommand.h; sourceTree = ""; }; + 484F21691BA1C5F8001C1B5F /* makefile-internal */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = "makefile-internal"; sourceTree = ""; }; 48705ABA19BE32C50075E977 /* abstractrandomforest.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = abstractrandomforest.hpp; path = source/randomforest/abstractrandomforest.hpp; sourceTree = ""; }; 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getmimarkspackagecommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getmimarkspackagecommand.cpp; sourceTree = ""; }; 48705ABC19BE32C50075E977 /* getmimarkspackagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getmimarkspackagecommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getmimarkspackagecommand.h; sourceTree = ""; }; @@ -1590,6 +1591,7 @@ children = ( A7A61F1A130035C800E05B6B /* LICENSE.md */, A70332B512D3A13400761E33 /* makefile */, + 484F21691BA1C5F8001C1B5F /* makefile-internal */, 481623E31B58267D004C60B7 /* INSTALL.md */, A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */, A77B718A173D40E4002163C2 /* calcsparcc.h */, @@ -3405,7 +3407,6 @@ "$(OTHER_CFLAGS)", ); OTHER_LDFLAGS = ( - "-lncurses", "-lreadline", "-lboost_iostreams", ); @@ -3454,7 +3455,6 @@ "$(OTHER_CFLAGS)", ); OTHER_LDFLAGS = ( - "-lncurses", "-lreadline", "-lboost_iostreams", ); diff --git a/makefile b/makefile index c05e2621..78221485 100644 --- a/makefile +++ b/makefile @@ -16,13 +16,9 @@ MOTHUR_FILES="\"Enter_your_default_path_here\"" RELEASE_DATE = "\"7/27/2015\"" VERSION = "\"1.36.1\"" -# Optimize to level 3: -CXXFLAGS += -O3 - - ifeq ($(strip $(64BIT_VERSION)),yes) #if you are a mac user use the following line - TARGET_ARCH += -arch x86_64 + #TARGET_ARCH += -O3 -arch x86_64 #if you using cygwin to build Windows the following line #CXX = x86_64-w64-mingw32-g++ @@ -50,27 +46,13 @@ endif ifeq ($(strip $(USEREADLINE)),yes) CXXFLAGS += -DUSE_READLINE - LIBS = \ - -lreadline\ - -lncurses + LIBS += -lreadline endif #The boost libraries allow you to read gz files. ifeq ($(strip $(USEBOOST)),yes) - BOOST_INCLUDE_DIR="/usr/local/include" - BOOST_LIBRARY_DIR="/usr/local/lib" - - CXXFLAGS += -DUSE_BOOST - - LIBS += ${BOOST_LIBRARY_DIR}/libboost_iostreams.a - - #if mac - LIBS += ${BOOST_LIBRARY_DIR}/zlib.a - - #if linux or windows - #LIBS += ${BOOST_LIBRARY_DIR}/libz.a - + LIBS += -lboost_iostreams endif @@ -105,12 +87,9 @@ endif mothur : $(OBJECTS) uchime $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS) - strip mothur - uchime: - cd source/uchime_src && ./mk && mv uchime ../../ && cd .. - + cd source/uchime_src && ./mk && mv uchime ../../ && cd .. install : mothur diff --git a/makefile-internal b/makefile-internal new file mode 100644 index 00000000..2adaef37 --- /dev/null +++ b/makefile-internal @@ -0,0 +1,98 @@ +64BIT_VERSION ?= yes +USEREADLINE ?= yes +USEBOOST ?= yes +RELEASE_DATE = "\"7/27/2015\"" +VERSION = "\"1.36.1\"" + +# Optimize to level 3: + CXXFLAGS += -O3 + + +ifeq ($(strip $(64BIT_VERSION)),yes) + #if you are a mac user use the following line + TARGET_ARCH += -arch x86_64 + + #if you using cygwin to build Windows the following line + #CXX = x86_64-w64-mingw32-g++ + #CC = x86_64-w64-mingw32-g++ + #TARGET_ARCH += -m64 -static + + #if you are a linux user use the following line + #CXXFLAGS += -mtune=native -march=native + + CXXFLAGS += -DBIT_VERSION +endif + + +CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION} + +# if you do not want to use the readline library, set this to no. +# make sure you have the library installed +ifeq ($(strip $(USEREADLINE)),yes) + CXXFLAGS += -DUSE_READLINE + LIBS += -lreadline +endif + + +#The boost libraries allow you to read gz files. +ifeq ($(strip $(USEBOOST)),yes) + #statically link so the boost install is not required on users machine + BOOST_INCLUDE_DIR="/usr/local/include" + BOOST_LIBRARY_DIR="/usr/local/lib" + + CXXFLAGS += -DUSE_BOOST + + LIBS += ${BOOST_LIBRARY_DIR}/libboost_iostreams.a + + #if mac + LIBS += ${BOOST_LIBRARY_DIR}/zlib.a + + #if linux or windows + #LIBS += ${BOOST_LIBRARY_DIR}/libz.a +endif + +# +# INCLUDE directories for mothur +# +# + VPATH=source/calculators:source/chimera:source/classifier:source/clearcut:source/commands:source/communitytype:source/datastructures:source/metastats:source/randomforest:source/read:source/svm + skipUchime := source/uchime_src/ + subdirs := $(sort $(dir $(filter-out $(skipUchime), $(wildcard source/*/)))) + subDirIncludes = $(patsubst %, -I %, $(subdirs)) + subDirLinking = $(patsubst %, -L%, $(subdirs)) + CXXFLAGS += -I. $(subDirIncludes) + LDFLAGS += $(subDirLinking) + + +# +# Get the list of all .cpp files, rename to .o files +# + OBJECTS=$(patsubst %.cpp,%.o,$(wildcard $(addsuffix *.cpp,$(subdirs)))) + OBJECTS+=$(patsubst %.c,%.o,$(wildcard $(addsuffix *.c,$(subdirs)))) + OBJECTS+=$(patsubst %.cpp,%.o,$(wildcard *.cpp)) + OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c)) + +mothur : $(OBJECTS) uchime + $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS) + strip mothur + + +uchime: + cd source/uchime_src && ./mk && mv uchime ../../ && cd .. + + +install : mothur + + +%.o : %.c %.h + $(COMPILE.c) $(OUTPUT_OPTION) $< +%.o : %.cpp %.h + $(COMPILE.cpp) $(OUTPUT_OPTION) $< +%.o : %.cpp %.hpp + $(COMPILE.cpp) $(OUTPUT_OPTION) $< + + + +clean : + @rm -f $(OBJECTS) + @rm -f uchime \ No newline at end of file diff --git a/source/commands/catchallcommand.cpp b/source/commands/catchallcommand.cpp index 9e2bcbb0..74f02e1f 100644 --- a/source/commands/catchallcommand.cpp +++ b/source/commands/catchallcommand.cpp @@ -209,6 +209,7 @@ int CatchAllCommand::execute() { savedOutputDir = outputDir; string catchAllCommandExe = ""; string catchAllTest = ""; + string programName = ""; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) if (outputDir == "") { outputDir = "./"; } //force full pathname to be created for catchall, this is necessary because if catchall is in the path it will look for input file whereever the exe is and not the cwd. catchAllTest = path + "CatchAllcmdL.exe"; @@ -223,9 +224,8 @@ int CatchAllCommand::execute() { int ableToOpen = m->openInputFile(catchAllTest, in, "no error"); in.close(); if(ableToOpen == 1) { m->mothurOut(catchAllTest + " file does not exist. Checking path... \n"); - //check to see if uchime is in the path?? - string programName = "CatchAllcmdW.exe"; + programName = "CatchAllcmdW.exe"; #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) programName = "CatchAllcmdL.exe"; #endif @@ -234,13 +234,23 @@ int CatchAllCommand::execute() { ifstream in2; ableToOpen = m->openInputFile(cLocation, in2, "no error"); in2.close(); - if(ableToOpen == 1) { m->mothurOut("[ERROR]: " + cLocation + " file does not exist. mothur requires the catchall executable."); m->mothurOutEndLine(); return 0; } + if(ableToOpen == 1) { + programName = "catchall"; + + string cLocation = m->findProgramPath(programName); + + ifstream in3; + ableToOpen = m->openInputFile(cLocation, in3, "no error"); in3.close(); + + if(ableToOpen == 1) { m->mothurOut("[ERROR]: " + cLocation + " file does not exist. mothur requires the catchall executable."); m->mothurOutEndLine(); return 0; }else { m->mothurOut("Found catchall in your path, using " + cLocation + "\n"); catchAllTest = cLocation; } + } else { m->mothurOut("Found catchall in your path, using " + cLocation + "\n"); catchAllTest = cLocation; } } catchAllTest = m->getFullPathName(catchAllTest); #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - catchAllCommandExe += "mono \"" + catchAllTest + "\" "; + if (programName == "catchall") { catchAllCommandExe += "catchall "; } + else { catchAllCommandExe += "mono \"" + catchAllTest + "\" "; } #else catchAllCommandExe += "\"" + catchAllTest + "\" "; #endif diff --git a/source/uchime_src/mk b/source/uchime_src/mk index 24aeba0a..8cd62826 100755 --- a/source/uchime_src/mk +++ b/source/uchime_src/mk @@ -6,22 +6,22 @@ rm -f *.o mk.stdout mk.stderr tmp.stderr for CPPName in $CPPNames do - echo $CPPName >> /dev/tty - g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr - cat tmp.stderr + echo $CPPName >&2 + g++ $ENV_GCC_OPTS -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr + cat tmp.stderr cat tmp.stderr >> mk.stderr rm -f tmp.stderr done -LINK_OPTS= -if [ `uname -s` == Linux ] ; then - LINK_OPTS=-static -fi +LINK_OPTS= +#if [ `uname -s` == Linux ] ; then +# LINK_OPTS=-static +#fi g++ $LINK_OPTS $ENV_LINK_OPTS -g -o uchime $ObjNames >> mk.stdout 2>> tmp.stderr cat tmp.stderr cat tmp.stderr >> mk.stderr rm -f tmp.stderr -strip uchime +#strip uchime ls -lh uchime sum uchime From df657dd0c2cb6c5a5a4babe82784f0d65fe9bd3e Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 11 Sep 2015 13:13:51 -0400 Subject: [PATCH 040/135] Adds more output to filter.seqs debug --- makefile | 12 +----------- source/commands/filterseqscommand.cpp | 4 ++-- source/commands/filterseqscommand.h | 6 +++++- 3 files changed, 8 insertions(+), 14 deletions(-) diff --git a/makefile b/makefile index 78221485..c381e0a2 100644 --- a/makefile +++ b/makefile @@ -16,18 +16,8 @@ MOTHUR_FILES="\"Enter_your_default_path_here\"" RELEASE_DATE = "\"7/27/2015\"" VERSION = "\"1.36.1\"" -ifeq ($(strip $(64BIT_VERSION)),yes) - #if you are a mac user use the following line - #TARGET_ARCH += -O3 -arch x86_64 - - #if you using cygwin to build Windows the following line - #CXX = x86_64-w64-mingw32-g++ - #CC = x86_64-w64-mingw32-g++ - #TARGET_ARCH += -m64 -static - - #if you are a linux user use the following line - #CXXFLAGS += -mtune=native -march=native +ifeq ($(strip $(64BIT_VERSION)),yes) CXXFLAGS += -DBIT_VERSION endif diff --git a/source/commands/filterseqscommand.cpp b/source/commands/filterseqscommand.cpp index 52469fc4..8dd2afcb 100644 --- a/source/commands/filterseqscommand.cpp +++ b/source/commands/filterseqscommand.cpp @@ -743,8 +743,8 @@ int FilterSeqsCommand::driverCreateFilter(Filters& F, string filename, linePair* Sequence seq(in); m->gobble(in); if (seq.getName() != "") { - if (m->debug) { m->mothurOut("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); m->mothurOutEndLine();} - if (seq.getAligned().length() != alignmentLength) { m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); m->mothurOutEndLine(); error = true; if (!m->debug) { m->control_pressed = true; } } + if (m->debug) { m->mothurOutJustToScreen("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); m->mothurOutEndLine();} + if (seq.getAligned().length() != alignmentLength) { m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); m->mothurOutEndLine(); error = true; if (!m->debug) { m->control_pressed = true; }else{ m->mothurOutJustToLog("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); m->mothurOutEndLine();} } if(trump != '*') { F.doTrump(seq); } if(m->isTrue(vertical) || soft != 0) { F.getFreqs(seq); } diff --git a/source/commands/filterseqscommand.h b/source/commands/filterseqscommand.h index b2967a21..8daaa4a8 100644 --- a/source/commands/filterseqscommand.h +++ b/source/commands/filterseqscommand.h @@ -146,6 +146,7 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){ } pDataArray->count = 0; + bool error = false; for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process if (pDataArray->m->control_pressed) { in.close(); pDataArray->count = 1; return 1; } @@ -153,7 +154,8 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){ Sequence current(in); pDataArray->m->gobble(in); if (current.getName() != "") { - if (current.getAligned().length() != pDataArray->alignmentLength) { pDataArray->m->mothurOut("Sequences are not all the same length, please correct."); pDataArray->m->mothurOutEndLine(); pDataArray->m->control_pressed = true; } + if (pDataArray->m->debug) { pDataArray->m->mothurOutJustToScreen("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); pDataArray->m->mothurOutEndLine();} + if (seq.getAligned().length() != pDataArray->alignmentLength) { pDataArray->m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); pDataArray->m->mothurOutEndLine(); error = true; if (!pDataArray->m->debug) { pDataArray->m->control_pressed = true; }else{ pDataArray->m->mothurOutJustToLog("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); pDataArray->m->mothurOutEndLine();} } if(pDataArray->trump != '*') { pDataArray->F.doTrump(current); } if(pDataArray->m->isTrue(pDataArray->vertical) || pDataArray->soft != 0) { pDataArray->F.getFreqs(current); } @@ -166,6 +168,8 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){ if((pDataArray->count) % 100 != 0){ pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count)+"\n"); } in.close(); + + if (error) { pDataArray->m->control_pressed = true; } return 0; From 16da4f11f8059a7ec9922228e3740ee8f343646d Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 15 Sep 2015 16:17:54 -0400 Subject: [PATCH 041/135] Adds median method to merge.groups count table Issue #105 Fixes design flaw in designMap new functions --- source/commands/mergegroupscommand.cpp | 97 ++++++++++++++++++++++++++++++++-- source/datastructures/counttable.cpp | 9 ++-- source/datastructures/designmap.cpp | 82 +++++++++++++--------------- 3 files changed, 137 insertions(+), 51 deletions(-) diff --git a/source/commands/mergegroupscommand.cpp b/source/commands/mergegroupscommand.cpp index 9c8c67c7..ead2c6e8 100644 --- a/source/commands/mergegroupscommand.cpp +++ b/source/commands/mergegroupscommand.cpp @@ -10,6 +10,7 @@ #include "mergegroupscommand.h" #include "sharedutilities.h" #include "counttable.h" +#include "removeseqscommand.h" //********************************************************************************************************************** vector MergeGroupsCommand::setParameters(){ @@ -326,10 +327,63 @@ int MergeGroupsCommand::process(vector& thisLookUp, ofstrea try { if (method == "average") { //create sharedRabundFloatVectors + vector temp = thisLookUp[0]->getSharedRAbundFloatVectors(thisLookUp); //follow code below + map merged; + map::iterator it; + map > clearGroupAbunds; + map >::iterator itAbunds; + for (int i = 0; i < temp.size(); i++) { + if (m->control_pressed) { return 0; } + //what grouping does this group belong to + string grouping = designMap->get(temp[i]->getGroup()); + if (grouping == "not found") { m->mothurOut("[ERROR]: " + temp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } + else { + //do we already have a member of this grouping? + it = merged.find(grouping); + + if (it == merged.end()) { //nope, so create it + merged[grouping] = *temp[i]; + merged[grouping].setGroup(grouping); + vector temp; + clearGroupAbunds[grouping] = temp; + } + } + } + for (int j = 0; j < temp[0]->getNumBins(); j++) { + if (m->control_pressed) { return 0; } + + map > otusGroupAbunds = clearGroupAbunds; + for (int i = 0; i < temp.size(); i++) { + + string grouping = designMap->get(temp[i]->getGroup()); + if (grouping == "not found") { m->mothurOut("[ERROR]: " + temp[i]->getGroup() + " is not in your design file. Ignoring!"); m->mothurOutEndLine(); grouping = "NOTFOUND"; } + else { + otusGroupAbunds[grouping].push_back(temp[i]->getAbundance(j)); + } + } + + for (itAbunds = otusGroupAbunds.begin(); itAbunds != otusGroupAbunds.end(); itAbunds++) { + int abund = mergeAbund(itAbunds->second); + merged[itAbunds->first].set(j, abund, itAbunds->first); + } + } + + if (method == "median") { + vector temp2; + for (it = merged.begin(); it != merged.end(); it++) { temp2.push_back(&(it->second)); } + eliminateZeroOTUS(temp2); + } + + //print new file + for (it = merged.begin(); it != merged.end(); it++) { + if (!m->printedSharedHeaders) { (it->second).printHeaders(out); } + out << (it->second).getLabel() << '\t' << it->first << '\t'; + (it->second).print(out); + } }else { map merged; map::iterator it; @@ -603,6 +657,7 @@ int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ } treatments = newTable.getNamesOfGroups(); + set namesToRemove; vector namesOfSeqs = countTable.getNamesOfSeqs(); for (int i = 0; i < namesOfSeqs.size(); i++) { @@ -616,18 +671,54 @@ int MergeGroupsCommand::processCountFile(DesignMap*& designMap){ } //create new counts for seq for new table - vector newCounts; + vector newCounts; int totalAbund = 0; for (int j = 0; j < treatments.size(); j++){ int abund = mergeAbund(thisSeqsMap[treatments[j]]); - newCounts.push_back(abund); //order matters, add in count for each treatment in new table. + newCounts.push_back(abund); //order matters, add in count for each treatment in new table. + totalAbund += abund; } //add seq to new table - newTable.push_back(namesOfSeqs[i], newCounts); + if(totalAbund == 0) { + namesToRemove.insert(namesOfSeqs[i]); + }else { newTable.push_back(namesOfSeqs[i], newCounts); } } if (error) { m->control_pressed = true; return 0; } + //remove sequences zeroed out by median method + if (namesToRemove.size() != 0) { + //print names + ofstream out; + string accnosFile = "accnosFile.temp"; + m->openOutputFile(accnosFile, out); + + //output to .accnos file + for (set::iterator it = namesToRemove.begin(); it != namesToRemove.end(); it++) { + if (m->control_pressed) { out.close(); m->mothurRemove(accnosFile); return 0; } + out << *it << endl; + } + out.close(); + + //run remove.seqs + string inputString = "accnos=" + accnosFile + ", fasta=" + fastafile; + + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running command: remove.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* removeCommand = new RemoveSeqsCommand(inputString); + removeCommand->execute(); + + map > filenames = removeCommand->getOutputFiles(); + + delete removeCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + m->mothurRemove(accnosFile); + } + string thisOutputDir = outputDir; if (outputDir == "") { thisOutputDir += m->hasPath(countfile); } map variables; diff --git a/source/datastructures/counttable.cpp b/source/datastructures/counttable.cpp index 9cc8bc7e..30f2914f 100644 --- a/source/datastructures/counttable.cpp +++ b/source/datastructures/counttable.cpp @@ -709,7 +709,7 @@ int CountTable::push_back(string seqName) { m->mothurOut("[ERROR]: Your count table contains more than 1 sequence named " + seqName + ", sequence names must be unique. Please correct."); m->mothurOutEndLine(); m->control_pressed = true; } - return 0; + return 1; } catch(exception& e) { m->errorOut(e, "CountTable", "push_back"); @@ -761,7 +761,7 @@ int CountTable::push_back(string seqName, int thisTotal) { m->mothurOut("[ERROR]: Your count table contains more than 1 sequence named " + seqName + ", sequence names must be unique. Please correct."); m->mothurOutEndLine(); m->control_pressed = true; } - return 0; + return thisTotal; } catch(exception& e) { m->errorOut(e, "CountTable", "push_back"); @@ -772,10 +772,11 @@ int CountTable::push_back(string seqName, int thisTotal) { //add sequence with group info int CountTable::push_back(string seqName, vector groupCounts) { try { + int thisTotal = 0; map::iterator it = indexNameMap.find(seqName); if (it == indexNameMap.end()) { if ((hasGroups) && (groupCounts.size() != getNumGroups())) { m->mothurOut("[ERROR]: Your count table has a " + toString(getNumGroups()) + " groups and " + seqName + " has " + toString(groupCounts.size()) + ", please correct."); m->mothurOutEndLine(); m->control_pressed = true; } - int thisTotal = 0; + for (int i = 0; i < getNumGroups(); i++) { totalGroups[i] += groupCounts[i]; thisTotal += groupCounts[i]; } if (hasGroups) { counts.push_back(groupCounts); } indexNameMap[seqName] = uniques; @@ -786,7 +787,7 @@ int CountTable::push_back(string seqName, vector groupCounts) { m->mothurOut("[ERROR]: Your count table contains more than 1 sequence named " + seqName + ", sequence names must be unique. Please correct."); m->mothurOutEndLine(); m->control_pressed = true; } - return 0; + return thisTotal; } catch(exception& e) { m->errorOut(e, "CountTable", "push_back"); diff --git a/source/datastructures/designmap.cpp b/source/datastructures/designmap.cpp index e1b60ba9..507cc400 100644 --- a/source/datastructures/designmap.cpp +++ b/source/datastructures/designmap.cpp @@ -288,7 +288,7 @@ int DesignMap::setValues(string group, map values) { return 0; } catch(exception& e) { - m->errorOut(e, "DesignMap", "set"); + m->errorOut(e, "DesignMap", "setValues"); exit(1); } } @@ -314,22 +314,21 @@ int DesignMap::getNumUnique(map > selected) { try { int num = 0; - //get indexes of categories - vector indexes; + map > indexes; for (map >::iterator it = selected.begin(); it != selected.end(); it++) { map::iterator it2 = indexCategoryMap.find(it->first); if (it2 == indexCategoryMap.end()) { m->mothurOut("[ERROR]: Your design file does not contain a category named " + it->first + ". Please correct."); m->mothurOutEndLine(); m->control_pressed = true; return 0; - }else { indexes.push_back(it2->second); } + }else { + indexes[it2->second] = it->second; + } } - for (int i = 0; i < designMap.size(); i++) { + for (int j = 0; j < designMap.size(); j++) { bool hasAll = true; //innocent til proven guilty - int count = 0; - for (map >::iterator it = selected.begin(); it != selected.end(); it++) { //loop through each - //check category to see if this group meets the requirements - if (!m->inUsersGroups(designMap[i][indexes[count]], it->second)) { hasAll = false; it = selected.end(); } - count++; + for (map >::iterator it = indexes.begin(); it != indexes.end(); it++) { + //column number is it->first + if (!m->inUsersGroups(designMap[j][it->first], it->second)) { hasAll = false; } } if (hasAll) { num++; } } @@ -348,26 +347,24 @@ int DesignMap::getNumShared(map > selected) { try { int num = 0; - //get indexes of categories - vector indexes; + map > indexes; for (map >::iterator it = selected.begin(); it != selected.end(); it++) { map::iterator it2 = indexCategoryMap.find(it->first); if (it2 == indexCategoryMap.end()) { m->mothurOut("[ERROR]: Your design file does not contain a category named " + it->first + ". Please correct."); m->mothurOutEndLine(); m->control_pressed = true; return 0; - }else { indexes.push_back(it2->second); } + }else { + indexes[it2->second] = it->second; + } } - for (int i = 0; i < designMap.size(); i++) { - bool hasAny = false; //guilty til proven innocent - int count = 0; - for (map >::iterator it = selected.begin(); it != selected.end(); it++) { //loop through each - //check category to see if this group meets the requirements - if (m->inUsersGroups(designMap[i][indexes[count]], it->second)) { hasAny = true; it = selected.end(); } - count++; + for (int j = 0; j < designMap.size(); j++) { + bool hasAny = false; //innocent til proven guilty + for (map >::iterator it = indexes.begin(); it != indexes.end(); it++) { + //column number is it->first + if (m->inUsersGroups(designMap[j][it->first], it->second)) { hasAny = true; } } if (hasAny) { num++; } } - return num; } @@ -384,13 +381,14 @@ vector DesignMap::getNamesUnique(map > selected) try { vector names; - //get indexes of categories - vector indexes; + map > indexes; for (map >::iterator it = selected.begin(); it != selected.end(); it++) { map::iterator it2 = indexCategoryMap.find(it->first); if (it2 == indexCategoryMap.end()) { m->mothurOut("[ERROR]: Your design file does not contain a category named " + it->first + ". Please correct."); m->mothurOutEndLine(); m->control_pressed = true; return names; - }else { indexes.push_back(it2->second); } + }else { + indexes[it2->second] = it->second; + } } //map int to name @@ -399,22 +397,19 @@ vector DesignMap::getNamesUnique(map > selected) reverse[it->second] = it->first; } - for (int i = 0; i < designMap.size(); i++) { + for (int j = 0; j < designMap.size(); j++) { bool hasAll = true; //innocent til proven guilty - int count = 0; - for (map >::iterator it = selected.begin(); it != selected.end(); it++) { //loop through each - //check category to see if this group meets the requirements - if (!m->inUsersGroups(designMap[i][indexes[count]], it->second)) { hasAll = false; it = selected.end(); } - count++; + for (map >::iterator it = indexes.begin(); it != indexes.end(); it++) { + //column number is it->first + if (!m->inUsersGroups(designMap[j][it->first], it->second)) { hasAll = false; } } if (hasAll) { - map::iterator it = reverse.find(i); + map::iterator it = reverse.find(j); if (it == reverse.end()) { m->mothurOut("[ERROR]: should never get here, oops. Please correct."); m->mothurOutEndLine(); m->control_pressed = true; return names; }else { names.push_back(it->second); } } } - return names; } @@ -430,13 +425,14 @@ vector DesignMap::getNamesShared(map > selected) try { vector names; - //get indexes of categories - vector indexes; + map > indexes; for (map >::iterator it = selected.begin(); it != selected.end(); it++) { map::iterator it2 = indexCategoryMap.find(it->first); if (it2 == indexCategoryMap.end()) { m->mothurOut("[ERROR]: Your design file does not contain a category named " + it->first + ". Please correct."); m->mothurOutEndLine(); m->control_pressed = true; return names; - }else { indexes.push_back(it2->second); } + }else { + indexes[it2->second] = it->second; + } } //map int to name @@ -445,23 +441,21 @@ vector DesignMap::getNamesShared(map > selected) reverse[it->second] = it->first; } - for (int i = 0; i < designMap.size(); i++) { - bool hasAny = false; - int count = 0; - for (map >::iterator it = selected.begin(); it != selected.end(); it++) { //loop through each - //check category to see if this group meets the requirements - if (m->inUsersGroups(designMap[i][indexes[count]], it->second)) { hasAny = true; break; } - count++; + for (int j = 0; j < designMap.size(); j++) { + bool hasAny = false; //innocent til proven guilty + for (map >::iterator it = indexes.begin(); it != indexes.end(); it++) { + //column number is it->first + if (m->inUsersGroups(designMap[j][it->first], it->second)) { hasAny = true; } } + if (hasAny) { - map::iterator it = reverse.find(i); + map::iterator it = reverse.find(j); if (it == reverse.end()) { m->mothurOut("[ERROR]: should never get here, oops. Please correct."); m->mothurOutEndLine(); m->control_pressed = true; return names; }else { names.push_back(it->second); } } } - return names; } catch(exception& e) { From 7b5bd3a04613c157f83f4c9d2f001c17f619966f Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 16 Sep 2015 12:58:33 -0400 Subject: [PATCH 042/135] Adds numcols parameter to make.file command Issue #162 --- source/commands/makefilecommand.cpp | 26 +++++++++++++++++++++----- source/commands/makefilecommand.h | 1 + 2 files changed, 22 insertions(+), 5 deletions(-) diff --git a/source/commands/makefilecommand.cpp b/source/commands/makefilecommand.cpp index e67c0ae1..5118167b 100644 --- a/source/commands/makefilecommand.cpp +++ b/source/commands/makefilecommand.cpp @@ -12,6 +12,7 @@ vector MakeFileCommand::setParameters(){ try { CommandParameter ptype("type", "Multiple", "fastq-gz", "fastq", "", "", "","",false,false); parameters.push_back(ptype); + CommandParameter pnumcols("numcols", "Multiple", "2-3", "3", "", "", "","",false,false, true); parameters.push_back(pnumcols); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -30,9 +31,10 @@ string MakeFileCommand::getHelpString(){ try { string helpString = ""; helpString += "The make.file command takes a input directory and creates a file file containing the fastq or gz files in the directory.\n"; - helpString += "The make.fastq command parameters are inputdir and type. inputdir is required.\n"; + helpString += "The make.fastq command parameters are inputdir, numcols and type. inputdir is required.\n"; helpString += "May create more than one file. Mothur will attempt to match paired files. \n"; helpString += "The type parameter allows you to set the type of files to look for. Options are fastq or gz. Default=fastq. \n"; + helpString += "The numcols parameter allows you to set number of columns you mothur to make in the file. Default=3, meaning groupName forwardFastq reverseFastq. The groupName is made from the beginning part of the forwardFastq file. Everything up to the first '_' or if no '_' is found then the root of the forwardFastq filename.\n"; helpString += "The make.file command should be in the following format: \n"; helpString += "make.file(inputdir=yourInputDirectory). \n"; helpString += "Example make.group(inputdir=fastqFiles)\n"; @@ -102,9 +104,6 @@ MakeFileCommand::MakeFileCommand(string option) { vector tempOutNames; outputTypes["file"] = tempOutNames; - //if the user changes the output directory command factory will send this info to us in the output parameter - outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; } - //if the user changes the input directory command factory will send this info to us in the output parameter inputDir = validParameter.validFile(parameters, "inputdir", false); if (inputDir == "not found"){ inputDir = ""; m->mothurOut("[ERROR]: The inputdir parameter is required, aborting."); m->mothurOutEndLine(); abort = true; } @@ -113,11 +112,20 @@ MakeFileCommand::MakeFileCommand(string option) { else { abort = true; } } + //if the user changes the output directory command factory will send this info to us in the output parameter + outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = inputDir; } + + //if the user changes the input directory command factory will send this info to us in the output parameter typeFile = validParameter.validFile(parameters, "type", false); if (typeFile == "not found"){ typeFile = "fastq"; } if ((typeFile != "fastq") && (typeFile != "gz")) { m->mothurOut(typeFile + " is not a valid type. Options are fastq or gz. I will use fastq."); m->mothurOutEndLine(); typeFile = "fastq"; } + + string temp = validParameter.validFile(parameters, "numcols", false); if(temp == "not found"){ temp = "3"; } + if ((temp != "2") && (temp != "3")) { m->mothurOut(temp + " is not a valid numcols. Options are 2 or 3. I will use 3."); m->mothurOutEndLine(); temp = "3"; } + m->mothurConvert(temp, numCols); + } } catch(exception& e) { @@ -171,7 +179,15 @@ int MakeFileCommand::execute(){ int pos = simpleName1.find("R1"); int pos2 = simpleName2.find("R2"); if ((pos != string::npos) && (pos2 != string::npos)){ - vector temp; temp.push_back(fastqFiles[i]); temp.push_back(fastqFiles[i+1]); lastFile = fastqFiles[i+1]; + vector temp; + if (numCols == 3) { + string groupName = "noGroup"+toString(i); + int posUnderscore = fastqFiles[i].find_first_of('_'); + if (posUnderscore == string::npos) { groupName = m->getSimpleName(m->getRootName(fastqFiles[i])); } + else{ groupName = m->getSimpleName(fastqFiles[i].substr(0, posUnderscore)); } + temp.push_back(groupName); + } + temp.push_back(fastqFiles[i]); temp.push_back(fastqFiles[i+1]); lastFile = fastqFiles[i+1]; paired.push_back(temp); i++; }else { diff --git a/source/commands/makefilecommand.h b/source/commands/makefilecommand.h index 7e7977a8..ec05dfb8 100644 --- a/source/commands/makefilecommand.h +++ b/source/commands/makefilecommand.h @@ -34,6 +34,7 @@ class MakeFileCommand : public Command { string inputDir, outputDir, typeFile; vector outputNames; + int numCols; bool abort; }; From 83888c52447e90da9942439ba79617165600c7f8 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 21 Sep 2015 14:16:27 -0400 Subject: [PATCH 043/135] ReadTree code comment cleanup --- source/commands/makefilecommand.cpp | 1 + source/datastructures/counttable.cpp | 17 ++++++++++++----- source/datastructures/tree.cpp | 4 +--- 3 files changed, 14 insertions(+), 8 deletions(-) diff --git a/source/commands/makefilecommand.cpp b/source/commands/makefilecommand.cpp index 5118167b..83b76066 100644 --- a/source/commands/makefilecommand.cpp +++ b/source/commands/makefilecommand.cpp @@ -142,6 +142,7 @@ int MakeFileCommand::execute(){ //find all .fastq files string tempFile = inputDir + "fileList.temp"; string findCommand = "find \"" + inputDir.substr(0, inputDir.length()-1) + "\" -maxdepth 1 -name \"*." + typeFile + "\" > \"" + tempFile + "\""; + if (m->debug) { m->mothurOut(findCommand + "\n"); } system(findCommand.c_str()); //read in list of files diff --git a/source/datastructures/counttable.cpp b/source/datastructures/counttable.cpp index 30f2914f..1273f1eb 100644 --- a/source/datastructures/counttable.cpp +++ b/source/datastructures/counttable.cpp @@ -28,6 +28,8 @@ int CountTable::createTable(set& n, map& g, set& uniques = 0; total = 0; + bool error = false; + //n contains treenames for (set::iterator it = n.begin(); it != n.end(); it++) { if (m->control_pressed) { break; } @@ -55,15 +57,20 @@ int CountTable::createTable(set& n, map& g, set& totals.push_back(1); total++; uniques++; + }else { + error = true; + m->mothurOut("[ERROR]: Your count table contains more than 1 sequence named " + seqName + ", sequence names must be unique. Please correct."); m->mothurOutEndLine(); } + } - - if (hasGroups) { - for (int i = 0; i < totalGroups.size(); i++) { - if (totalGroups[i] == 0) { m->mothurOut("\nRemoving group: " + groups[i] + " because all sequences have been removed.\n"); removeGroup(groups[i]); i--; } + if (error) { m->control_pressed = true; } + else { //check for zero groups + if (hasGroups) { + for (int i = 0; i < totalGroups.size(); i++) { + if (totalGroups[i] == 0) { m->mothurOut("\nRemoving group: " + groups[i] + " because all sequences have been removed.\n"); removeGroup(groups[i]); i--; } + } } } - return 0; } catch(exception& e) { diff --git a/source/datastructures/tree.cpp b/source/datastructures/tree.cpp index 2ab55c2f..675d5446 100644 --- a/source/datastructures/tree.cpp +++ b/source/datastructures/tree.cpp @@ -1314,9 +1314,7 @@ int Tree::parseTreeFile() { } filehandle.close(); return 0; - //for (int i = 0; i < globaldata->Treenames.size(); i++) { -//cout << globaldata->Treenames[i] << endl; } -//cout << globaldata->Treenames.size() << endl; + } catch(exception& e) { m->errorOut(e, "Tree", "parseTreeFile"); From 4f9bfffa312c3574374b0a40af69b2451f23b4ca Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 22 Sep 2015 12:15:32 -0400 Subject: [PATCH 044/135] Bug Fix: No group file with 3 column gz file make.contigs. --- source/commands/makecontigscommand.cpp | 23 +++++++++++------------ 1 file changed, 11 insertions(+), 12 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 992d80c5..1377fe00 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -1093,9 +1093,10 @@ unsigned long long MakeContigsCommand::driverGroups(vector< vector > fil createOligosGroup = false; oligos = new Oligos(); numBarcodes = 0; numFPrimers= 0; numLinkers= 0; numSpacers = 0; numRPrimers = 0; + string thisOutputGroupFileName = ""; if(oligosfile != "") { createOligosGroup = getOligos(fastaFileNames, qualFileNames, variables["[filename]"], uniqueFastaNames); } - if (createOligosGroup || createFileGroup) { outputGroupFileName = getOutputFileName("group",variables); } + if (createOligosGroup || createFileGroup) { thisOutputGroupFileName = getOutputFileName("group",variables); } //give group in file file precedence if (createFileGroup) { createOligosGroup = false; } @@ -1168,20 +1169,18 @@ unsigned long long MakeContigsCommand::driverGroups(vector< vector > fil if (l == 0) { m->openOutputFile(compositeGroupFile, outCGroup); outputNames.push_back(compositeGroupFile); outputTypes["group"].push_back(compositeGroupFile); } else { m->openOutputFileAppend(compositeGroupFile, outCGroup); } - if (!allFiles) { - m->mothurRemove(outputGroupFileName); - }else { - ofstream outGroup; - m->openOutputFile(outputGroupFileName, outGroup); - - for (map::iterator itGroup = groupMap.begin(); itGroup != groupMap.end(); itGroup++) { - outCGroup << itGroup->first << '\t' << itGroup->second << endl; - outGroup << itGroup->first << '\t' << itGroup->second << endl; - } - outGroup.close(); + + ofstream outGroup; + m->openOutputFile(thisOutputGroupFileName, outGroup); + for (map::iterator itGroup = groupMap.begin(); itGroup != groupMap.end(); itGroup++) { + outCGroup << itGroup->first << '\t' << itGroup->second << endl; + outGroup << itGroup->first << '\t' << itGroup->second << endl; } + outGroup.close(); outCGroup.close(); + if (!allFiles) { m->mothurRemove(thisOutputGroupFileName); } + for (map::iterator itGroups = groupCounts.begin(); itGroups != groupCounts.end(); itGroups++) { map::iterator itTemp = totalGroupCounts.find(itGroups->first); if (itTemp == totalGroupCounts.end()) { totalGroupCounts[itGroups->first] = itGroups->second; } //new group create it in totalGroups From 863274c344571f0869bdffde44a8a31eee565e89 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 22 Sep 2015 13:41:45 -0400 Subject: [PATCH 045/135] Bug Fix: make.sra with fastq.info not working with fastq and oligos file. --- source/commands/parsefastaqcommand.cpp | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/source/commands/parsefastaqcommand.cpp b/source/commands/parsefastaqcommand.cpp index d1b49813..9f8529f8 100644 --- a/source/commands/parsefastaqcommand.cpp +++ b/source/commands/parsefastaqcommand.cpp @@ -231,8 +231,7 @@ ParseFastaQCommand::ParseFastaQCommand(string option){ abort=true; } - if ((!fasta) && (!qual) && (file == "")) { m->mothurOut("[ERROR]: no outputs selected. Aborting."); m->mothurOutEndLine(); abort=true; } - + if ((!fasta) && (!qual) && (file == "") && (fastaQFile == "") && (oligosfile == "")) { m->mothurOut("[ERROR]: no outputs selected. Aborting."); m->mothurOutEndLine(); abort=true; } temp = validParameter.validFile(parameters, "checkorient", false); if (temp == "not found") { temp = "F"; } reorient = m->isTrue(temp); From 124a050437d90bbcdcc18b333ed20d55d6a871eb Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 22 Sep 2015 16:36:33 -0400 Subject: [PATCH 046/135] Checks for repeat names in get.seqs Issue #159 --- source/commands/getseqscommand.cpp | 249 +++++++++++++++++++++++-------------- source/mothurout.cpp | 6 +- 2 files changed, 162 insertions(+), 93 deletions(-) diff --git a/source/commands/getseqscommand.cpp b/source/commands/getseqscommand.cpp index 2375b6db..431d2e87 100644 --- a/source/commands/getseqscommand.cpp +++ b/source/commands/getseqscommand.cpp @@ -434,7 +434,7 @@ int GetSeqsCommand::readFastq(){ ofstream out; m->openOutputFile(outputFileName, out); - + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -456,9 +456,14 @@ int GetSeqsCommand::readFastq(){ m->checkName(name); if (names.count(name) != 0) { - wroteSomething = true; - selectedCount++; - out << outputString; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + wroteSomething = true; + selectedCount++; + out << outputString; + uniqueNames.insert(name); + }else { + m->mothurOut("[WARNING]: " + name + " is in your fastq file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } } } @@ -466,8 +471,7 @@ int GetSeqsCommand::readFastq(){ } in.close(); out.close(); - - + if (wroteSomething == false) { m->mothurOut("Your file does not contain any sequence from the .accnos file."); m->mothurOutEndLine(); } outputNames.push_back(outputFileName); outputTypes["fastq"].push_back(outputFileName); @@ -494,7 +498,6 @@ int GetSeqsCommand::readFasta(){ ofstream out; m->openOutputFile(outputFileName, out); - ifstream in; m->openInputFile(fastafile, in); string name; @@ -504,6 +507,7 @@ int GetSeqsCommand::readFasta(){ if (m->debug) { set temp; sanity["fasta"] = temp; } + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -521,13 +525,18 @@ int GetSeqsCommand::readFasta(){ if (name != "") { //if this name is in the accnos file if (names.count(name) != 0) { - wroteSomething = true; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + wroteSomething = true; - currSeq.printSequence(out); - selectedCount++; + currSeq.printSequence(out); + selectedCount++; + uniqueNames.insert(name); - if (m->debug) { sanity["fasta"].insert(name); } - } + if (m->debug) { sanity["fasta"].insert(name); } + }else { + m->mothurOut("[WARNING]: " + name + " is in your fasta file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } + } } m->gobble(in); } @@ -570,6 +579,7 @@ int GetSeqsCommand::readQual(){ if (m->debug) { set temp; sanity["qual"] = temp; } + set uniqueNames; while(!in.eof()){ string saveName = ""; string name = ""; @@ -600,13 +610,18 @@ int GetSeqsCommand::readQual(){ m->gobble(in); - if (names.count(saveName) != 0) { - wroteSomething = true; - - out << name << endl << scores; - selectedCount++; - if (m->debug) { sanity["qual"].insert(name); } - } + if (names.count(saveName) != 0) { + if (uniqueNames.count(saveName) == 0) { //this name hasn't been seen yet + uniqueNames.insert(saveName); + wroteSomething = true; + + out << name << endl << scores; + selectedCount++; + if (m->debug) { sanity["qual"].insert(name); } + }else { + m->mothurOut("[WARNING]: " + saveName + " is in your qfile more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } + } m->gobble(in); } @@ -652,6 +667,7 @@ int GetSeqsCommand::readCount(){ string test = headers; vector pieces = m->splitWhiteSpace(test); string name, rest; int thisTotal; rest = ""; + set uniqueNames; while (!in.eof()) { if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -662,9 +678,15 @@ int GetSeqsCommand::readCount(){ if (m->debug) { m->mothurOut("[DEBUG]: " + name + '\t' + rest + "\n"); } if (names.count(name) != 0) { - out << name << '\t' << thisTotal << '\t' << rest << endl; - wroteSomething = true; - selectedCount+= thisTotal; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + + out << name << '\t' << thisTotal << '\t' << rest << endl; + wroteSomething = true; + selectedCount+= thisTotal; + }else { + m->mothurOut("[WARNING]: " + name + " is in your count file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } } } in.close(); @@ -707,6 +729,7 @@ int GetSeqsCommand::readList(){ if (m->debug) { set temp; sanity["list"] = temp; } + set uniqueNames; while(!in.eof()){ selectedCount = 0; @@ -740,10 +763,20 @@ int GetSeqsCommand::readList(){ string newNames = ""; for (int j = 0; j < bnames.size(); j++) { - string name = bnames[j]; - //if that name is in the .accnos file, add it - if (names.count(name) != 0) { newNames += name + ","; selectedCount++; if (m->debug) { sanity["list"].insert(name); } } - } + string name = bnames[j]; + + //if that name is in the .accnos file, add it + if (names.count(name) != 0) { + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + newNames += name + ","; + selectedCount++; + if (m->debug) { sanity["list"].insert(name); } + }else { + m->mothurOut("[WARNING]: " + name + " is in your list file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } + } + } //if there are names in this bin add to new list if (newNames != "") { @@ -802,6 +835,7 @@ int GetSeqsCommand::readName(){ if (m->debug) { set temp; sanity["name"] = temp; } if (m->debug) { set temp; sanity["dupname"] = temp; } + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -815,13 +849,29 @@ int GetSeqsCommand::readName(){ vector parsedNames; m->splitAtComma(secondCol, parsedNames); - vector validSecond; + vector validSecond; vector parsedNames2; + bool parsedError = false; for (int i = 0; i < parsedNames.size(); i++) { - if (names.count(parsedNames[i]) != 0) { - validSecond.push_back(parsedNames[i]); - if (m->debug) { sanity["dupname"].insert(parsedNames[i]); } + if (names.count(parsedNames[i]) != 0) { + if (uniqueNames.count(parsedNames[i]) == 0) { //this name hasn't been seen yet + uniqueNames.insert(parsedNames[i]); + validSecond.push_back(parsedNames[i]); + parsedNames2.push_back(parsedNames[i]); + if (m->debug) { sanity["dupname"].insert(parsedNames[i]); } + }else { + m->mothurOut("[WARNING]: " + parsedNames[i] + " is in your name file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + parsedError = true; + } } } + if (parsedError) { + parsedNames = parsedNames2; + hold = ""; + if (parsedNames.size() != 0) { + for (int i = 0; i < parsedNames.size()-1; i++) { hold += parsedNames[i] + ','; } + hold += parsedNames[parsedNames.size()-1] + '\n'; + } + } if ((dups) && (validSecond.size() != 0)) { //dups = true and we want to add someone, then add everyone for (int i = 0; i < parsedNames.size(); i++) { names.insert(parsedNames[i]); if (m->debug) { sanity["dupname"].insert(parsedNames[i]); } } @@ -831,41 +881,43 @@ int GetSeqsCommand::readName(){ if (m->debug) { sanity["name"].insert(firstCol); } }else { - selectedCount += validSecond.size(); - - //if the name in the first column is in the set then print it and any other names in second column also in set - if (names.count(firstCol) != 0) { - - wroteSomething = true; - - out << firstCol << '\t'; - - //you know you have at least one valid second since first column is valid - for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } - out << validSecond[validSecond.size()-1] << endl; + if (validSecond.size() != 0) { + selectedCount += validSecond.size(); - if (m->debug) { sanity["name"].insert(firstCol); } - - - //make first name in set you come to first column and then add the remaining names to second column - }else { - - //you want part of this row - if (validSecond.size() != 0) { - - wroteSomething = true; - - out << validSecond[0] << '\t'; - //we are changing the unique name in the fasta file - uniqueMap[firstCol] = validSecond[0]; - - //you know you have at least one valid second since first column is valid - for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } - out << validSecond[validSecond.size()-1] << endl; + //if the name in the first column is in the set then print it and any other names in second column also in set + if (names.count(firstCol) != 0) { - if (m->debug) { sanity["name"].insert(validSecond[0]); } - } - } + wroteSomething = true; + + out << firstCol << '\t'; + + //you know you have at least one valid second since first column is valid + for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } + out << validSecond[validSecond.size()-1] << endl; + + if (m->debug) { sanity["name"].insert(firstCol); } + + + //make first name in set you come to first column and then add the remaining names to second column + }else { + + //you want part of this row + if (validSecond.size() != 0) { + + wroteSomething = true; + + out << validSecond[0] << '\t'; + //we are changing the unique name in the fasta file + uniqueMap[firstCol] = validSecond[0]; + + //you know you have at least one valid second since first column is valid + for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } + out << validSecond[validSecond.size()-1] << endl; + + if (m->debug) { sanity["name"].insert(validSecond[0]); } + } + } + } } m->gobble(in); } @@ -908,6 +960,7 @@ int GetSeqsCommand::readGroup(){ if (m->debug) { set temp; sanity["group"] = temp; } + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -917,15 +970,19 @@ int GetSeqsCommand::readGroup(){ in >> group; //read from second column - //if this name is in the accnos file - if (names.count(name) != 0) { - wroteSomething = true; - - out << name << '\t' << group << endl; - selectedCount++; - - if (m->debug) { sanity["group"].insert(name); } - } + if (names.count(name) != 0) { + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + wroteSomething = true; + + out << name << '\t' << group << endl; + selectedCount++; + + if (m->debug) { sanity["group"].insert(name); } + }else { + m->mothurOut("[WARNING]: " + name + " is in your group file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } + } m->gobble(in); } @@ -967,6 +1024,7 @@ int GetSeqsCommand::readTax(){ if (m->debug) { set temp; sanity["tax"] = temp; } + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -979,14 +1037,19 @@ int GetSeqsCommand::readTax(){ if (it != uniqueMap.end()) { name = it->second; } } - //if this name is in the accnos file - if (names.count(name) != 0) { - wroteSomething = true; + if (names.count(name) != 0) { + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + + wroteSomething = true; - out << name << '\t' << tax << endl; - selectedCount++; + out << name << '\t' << tax << endl; + selectedCount++; - if (m->debug) { sanity["tax"].insert(name); } + if (m->debug) { sanity["tax"].insert(name); } + }else { + m->mothurOut("[WARNING]: " + name + " is in your taxonomy file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } } m->gobble(in); @@ -1034,6 +1097,7 @@ int GetSeqsCommand::readAlign(){ } out << endl; + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -1047,18 +1111,23 @@ int GetSeqsCommand::readAlign(){ } //if this name is in the accnos file - if (names.count(name) != 0) { - wroteSomething = true; - selectedCount++; - - out << name << '\t'; - - //read rest - for (int i = 0; i < 15; i++) { - if (!in.eof()) { in >> junk; out << junk << '\t'; } - else { break; } - } - out << endl; + if (names.count(name) != 0) { + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + wroteSomething = true; + selectedCount++; + + out << name << '\t'; + + //read rest + for (int i = 0; i < 15; i++) { + if (!in.eof()) { in >> junk; out << junk << '\t'; } + else { break; } + } + out << endl; + }else { + m->mothurOut("[WARNING]: " + name + " is in your taxonomy file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else {//still read just don't do anything with it //read rest diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 58a28acc..9b485098 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -443,11 +443,11 @@ void MothurOut::errorOut(exception& e, string object, string function) { mothurOutEndLine(); }else { //bad alloc if (object == "cluster"){ - mothurOut(" has occurred in the " + object + " class function " + function + ". This error indicates your computer is running out of memory. There are two common causes for this, file size and format.\n\nFile Size:\nThe cluster command loads your distance matrix into RAM, and your distance file is most likely too large to fit in RAM. There are two options to help with this. The first is to use a cutoff. By using a cutoff mothur will only load distances that are below the cutoff. If that is still not enough, there is a command called cluster.split, http://www.mothur.org/wiki/cluster.split which divides the distance matrix, and clusters the smaller pieces separately. You may also be able to reduce the size of the original distance matrix by using the commands outlined in the Schloss SOP, http://www.mothur.org/wiki/Schloss_SOP. \n\nWrong Format:\nThis error can be caused by trying to read a column formatted distance matrix using the phylip parameter. By default, the dist.seqs command generates a column formatted distance matrix. To make a phylip formatted matrix set the dist.seqs command parameter output to lt. \n\nIf you are uable to resolve the issue, please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry."); + mothurOut(" has occurred in the " + object + " class function " + function + ". This error indicates your computer is running out of memory. There are two common causes for this, file size and format.\n\nFile Size:\nThe cluster command loads your distance matrix into RAM, and your distance file is most likely too large to fit in RAM. There are two options to help with this. The first is to use a cutoff. By using a cutoff mothur will only load distances that are below the cutoff. If that is still not enough, there is a command called cluster.split, http://www.mothur.org/wiki/cluster.split which divides the distance matrix, and clusters the smaller pieces separately. You may also be able to reduce the size of the original distance matrix by using the commands outlined in the Schloss SOP, http://www.mothur.org/wiki/Schloss_SOP. \n\nWrong Format:\nThis error can be caused by trying to read a column formatted distance matrix using the phylip parameter. By default, the dist.seqs command generates a column formatted distance matrix. To make a phylip formatted matrix set the dist.seqs command parameter output to lt. \n\nIf you are unable to resolve the issue, please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry."); }else if (object == "shhh.flows"){ - mothurOut(" has occurred in the " + object + " class function " + function + ". This error indicates your computer is running out of memory. The shhh.flows command is very memory intensive. This error is most commonly caused by trying to process a dataset too large, using multiple processors, or failing to run trim.flows before shhh.flows. If you are running our 32bit version, your memory usage is limited to 4G. If you have more than 4G of RAM and are running a 64bit OS, using our 64bit version may resolve your issue. If you are using multiple processors, try running the command with processors=1, the more processors you use the more memory is required. Running trim.flows with an oligos file, and then shhh.flows with the file option may also resolve the issue. If for some reason you are unable to run shhh.flows with your data, a good alternative is to use the trim.seqs command using a 50-bp sliding window and to trim the sequence when the average quality score over that window drops below 35. Our results suggest that the sequencing error rates by this method are very good, but not quite as good as by shhh.flows and that the resulting sequences tend to be a bit shorter. If you are uable to resolve the issue, please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry. "); + mothurOut(" has occurred in the " + object + " class function " + function + ". This error indicates your computer is running out of memory. The shhh.flows command is very memory intensive. This error is most commonly caused by trying to process a dataset too large, using multiple processors, or failing to run trim.flows before shhh.flows. If you are running our 32bit version, your memory usage is limited to 4G. If you have more than 4G of RAM and are running a 64bit OS, using our 64bit version may resolve your issue. If you are using multiple processors, try running the command with processors=1, the more processors you use the more memory is required. Running trim.flows with an oligos file, and then shhh.flows with the file option may also resolve the issue. If for some reason you are unable to run shhh.flows with your data, a good alternative is to use the trim.seqs command using a 50-bp sliding window and to trim the sequence when the average quality score over that window drops below 35. Our results suggest that the sequencing error rates by this method are very good, but not quite as good as by shhh.flows and that the resulting sequences tend to be a bit shorter. If you are unable to resolve the issue, please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry. "); }else { - mothurOut(" has occurred in the " + object + " class function " + function + ". This error indicates your computer is running out of memory. This is most commonly caused by trying to process a dataset too large, using multiple processors, or a file format issue. If you are running our 32bit version, your memory usage is limited to 4G. If you have more than 4G of RAM and are running a 64bit OS, using our 64bit version may resolve your issue. If you are using multiple processors, try running the command with processors=1, the more processors you use the more memory is required. Also, you may be able to reduce the size of your dataset by using the commands outlined in the Schloss SOP, http://www.mothur.org/wiki/Schloss_SOP. If you are uable to resolve the issue, please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry."); + mothurOut(" has occurred in the " + object + " class function " + function + ". This error indicates your computer is running out of memory. This is most commonly caused by trying to process a dataset too large, using multiple processors, or a file format issue. If you are running our 32bit version, your memory usage is limited to 4G. If you have more than 4G of RAM and are running a 64bit OS, using our 64bit version may resolve your issue. If you are using multiple processors, try running the command with processors=1, the more processors you use the more memory is required. Also, you may be able to reduce the size of your dataset by using the commands outlined in the Schloss SOP, http://www.mothur.org/wiki/Schloss_SOP. If you are unable to resolve the issue, please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry."); } } } From 993fd87b51caf25dbc057407f21b69a2bc7b6fd0 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 23 Sep 2015 11:40:38 -0400 Subject: [PATCH 047/135] Checks for repeat names in remove.seqs Issue #159 --- source/classifier/bayesian.cpp | 4 +- source/commands/getseqscommand.cpp | 2 +- source/commands/removeseqscommand.cpp | 175 +++++++++++++++++++++++----------- 3 files changed, 121 insertions(+), 60 deletions(-) diff --git a/source/classifier/bayesian.cpp b/source/classifier/bayesian.cpp index 9ac240db..7e8b55e0 100644 --- a/source/classifier/bayesian.cpp +++ b/source/classifier/bayesian.cpp @@ -111,7 +111,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) { //initialze probabilities wordGenusProb.resize(numKmers); - WordPairDiffArr.resize(numKmers); + for (int j = 0; j < numKmers; j++) { diffPair tempDiffPair; WordPairDiffArr.push_back(tempDiffPair); } for (int j = 0; j < wordGenusProb.size(); j++) { wordGenusProb[j].resize(genusNodes.size()); } ofstream out; @@ -484,7 +484,7 @@ void Bayesian::readProbFile(ifstream& in, ifstream& inNum, string inName, string vector num; num.resize(numKmers); float prob; vector zeroCountProb; zeroCountProb.resize(numKmers); - WordPairDiffArr.resize(numKmers); + for (int j = 0; j < numKmers; j++) { diffPair tempDiffPair; WordPairDiffArr.push_back(tempDiffPair); } //read version string line2 = m->getline(inNum); m->gobble(inNum); diff --git a/source/commands/getseqscommand.cpp b/source/commands/getseqscommand.cpp index 431d2e87..c6d08bb7 100644 --- a/source/commands/getseqscommand.cpp +++ b/source/commands/getseqscommand.cpp @@ -1126,7 +1126,7 @@ int GetSeqsCommand::readAlign(){ } out << endl; }else { - m->mothurOut("[WARNING]: " + name + " is in your taxonomy file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + m->mothurOut("[WARNING]: " + name + " is in your alignreport file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); } }else {//still read just don't do anything with it diff --git a/source/commands/removeseqscommand.cpp b/source/commands/removeseqscommand.cpp index a0b6fee7..3f17fa02 100644 --- a/source/commands/removeseqscommand.cpp +++ b/source/commands/removeseqscommand.cpp @@ -417,6 +417,7 @@ int RemoveSeqsCommand::readFasta(){ bool wroteSomething = false; int removedCount = 0; + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -432,9 +433,14 @@ int RemoveSeqsCommand::readFasta(){ if (name != "") { //if this name is in the accnos file if (names.count(name) == 0) { - wroteSomething = true; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + wroteSomething = true; - currSeq.printSequence(out); + currSeq.printSequence(out); + }else { + m->mothurOut("[WARNING]: " + name + " is in your fasta file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else { removedCount++; } } m->gobble(in); @@ -473,7 +479,7 @@ int RemoveSeqsCommand::readFastq(){ ofstream out; m->openOutputFile(outputFileName, out); - + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -495,8 +501,14 @@ int RemoveSeqsCommand::readFastq(){ m->checkName(name); if (names.count(name) == 0) { - wroteSomething = true; - out << outputString; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + wroteSomething = true; + out << outputString; + uniqueNames.insert(name); + }else { + m->mothurOut("[WARNING]: " + name + " is in your fastq file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } + }else { removedCount++; } } @@ -540,7 +552,7 @@ int RemoveSeqsCommand::readQual(){ bool wroteSomething = false; int removedCount = 0; - + set uniqueNames; while(!in.eof()){ string saveName = ""; string name = ""; @@ -572,9 +584,14 @@ int RemoveSeqsCommand::readQual(){ } if (names.count(saveName) == 0) { - wroteSomething = true; + if (uniqueNames.count(saveName) == 0) { //this name hasn't been seen yet + uniqueNames.insert(saveName); + wroteSomething = true; - out << name << endl << scores; + out << name << endl << scores; + }else { + m->mothurOut("[WARNING]: " + saveName + " is in your qfile more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else { removedCount++; } m->gobble(in); @@ -621,6 +638,7 @@ int RemoveSeqsCommand::readCount(){ string test = headers; vector pieces = m->splitWhiteSpace(test); string name, rest; int thisTotal; rest = ""; + set uniqueNames; while (!in.eof()) { if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -631,8 +649,13 @@ int RemoveSeqsCommand::readCount(){ if (m->debug) { m->mothurOut("[DEBUG]: " + name + '\t' + rest + "\n"); } if (names.count(name) == 0) { - out << name << '\t' << thisTotal << '\t' << rest << endl; - wroteSomething = true; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + out << name << '\t' << thisTotal << '\t' << rest << endl; + wroteSomething = true; + }else { + m->mothurOut("[WARNING]: " + name + " is in your count file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else { removedCount += thisTotal; } } in.close(); @@ -673,6 +696,7 @@ int RemoveSeqsCommand::readList(){ bool wroteSomething = false; int removedCount = 0; + set uniqueNames; while(!in.eof()){ removedCount = 0; @@ -709,7 +733,14 @@ int RemoveSeqsCommand::readList(){ for (int j = 0; j < bnames.size(); j++) { string name = bnames[j]; //if that name is in the .accnos file, add it - if (names.count(name) == 0) { newNames += name + ","; } + if (names.count(name) == 0) { + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + newNames += name + ","; + }else { + m->mothurOut("[WARNING]: " + name + " is in your list file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } + } else { removedCount++; } } @@ -767,6 +798,7 @@ int RemoveSeqsCommand::readName(){ bool wroteSomething = false; int removedCount = 0; + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -776,46 +808,58 @@ int RemoveSeqsCommand::readName(){ vector parsedNames; m->splitAtComma(secondCol, parsedNames); - vector validSecond; validSecond.clear(); + vector validSecond; validSecond.clear(); vector parsedNames2; + bool parsedError = false; for (int i = 0; i < parsedNames.size(); i++) { if (names.count(parsedNames[i]) == 0) { - validSecond.push_back(parsedNames[i]); + if (uniqueNames.count(parsedNames[i]) == 0) { //this name hasn't been seen yet + uniqueNames.insert(parsedNames[i]); + validSecond.push_back(parsedNames[i]); + parsedNames2.push_back(parsedNames[i]); + }else { + m->mothurOut("[WARNING]: " + parsedNames[i] + " is in your name file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + parsedError = true; + } } } + + if (parsedError) { parsedNames = parsedNames2; } if ((dups) && (validSecond.size() != parsedNames.size())) { //if dups is true and we want to get rid of anyone, get rid of everyone for (int i = 0; i < parsedNames.size(); i++) { names.insert(parsedNames[i]); } removedCount += parsedNames.size(); }else { - removedCount += parsedNames.size()-validSecond.size(); - //if the name in the first column is in the set then print it and any other names in second column also in set - if (names.count(firstCol) == 0) { - - wroteSomething = true; - - out << firstCol << '\t'; - - //you know you have at least one valid second since first column is valid - for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } - out << validSecond[validSecond.size()-1] << endl; - - //make first name in set you come to first column and then add the remaining names to second column - }else { - - //you want part of this row - if (validSecond.size() != 0) { - - wroteSomething = true; - - out << validSecond[0] << '\t'; - //we are changing the unique name in the fasta file - uniqueMap[firstCol] = validSecond[0]; - - //you know you have at least one valid second since first column is valid - for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } - out << validSecond[validSecond.size()-1] << endl; - } - } + if (validSecond.size() != 0) { + removedCount += parsedNames.size()-validSecond.size(); + //if the name in the first column is in the set then print it and any other names in second column also in set + if (names.count(firstCol) == 0) { + + wroteSomething = true; + + out << firstCol << '\t'; + + //you know you have at least one valid second since first column is valid + for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } + out << validSecond[validSecond.size()-1] << endl; + + //make first name in set you come to first column and then add the remaining names to second column + }else { + + //you want part of this row + if (validSecond.size() != 0) { + + wroteSomething = true; + + out << validSecond[0] << '\t'; + //we are changing the unique name in the fasta file + uniqueMap[firstCol] = validSecond[0]; + + //you know you have at least one valid second since first column is valid + for (int i = 0; i < validSecond.size()-1; i++) { out << validSecond[i] << ','; } + out << validSecond[validSecond.size()-1] << endl; + } + } + } } m->gobble(in); } @@ -854,6 +898,7 @@ int RemoveSeqsCommand::readGroup(){ bool wroteSomething = false; int removedCount = 0; + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -862,8 +907,13 @@ int RemoveSeqsCommand::readGroup(){ //if this name is in the accnos file if (names.count(name) == 0) { - wroteSomething = true; - out << name << '\t' << group << endl; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + wroteSomething = true; + out << name << '\t' << group << endl; + }else { + m->mothurOut("[WARNING]: " + name + " is in your group file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else { removedCount++; } m->gobble(in); @@ -903,6 +953,7 @@ int RemoveSeqsCommand::readTax(){ bool wroteSomething = false; int removedCount = 0; + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -916,9 +967,14 @@ int RemoveSeqsCommand::readTax(){ //if this name is in the accnos file if (names.count(name) == 0) { - wroteSomething = true; + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + wroteSomething = true; - out << name << '\t' << tax << endl; + out << name << '\t' << tax << endl; + }else { + m->mothurOut("[WARNING]: " + name + " is in your taxonomy file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else { removedCount++; } m->gobble(in); @@ -965,6 +1021,7 @@ int RemoveSeqsCommand::readAlign(){ } out << endl; + set uniqueNames; while(!in.eof()){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } @@ -977,17 +1034,21 @@ int RemoveSeqsCommand::readAlign(){ //if this name is in the accnos file if (names.count(name) == 0) { - wroteSomething = true; - - out << name << '\t'; - - //read rest - for (int i = 0; i < 15; i++) { - if (!in.eof()) { in >> junk; out << junk << '\t'; } - else { break; } - } - out << endl; - + if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet + uniqueNames.insert(name); + wroteSomething = true; + + out << name << '\t'; + + //read rest + for (int i = 0; i < 15; i++) { + if (!in.eof()) { in >> junk; out << junk << '\t'; } + else { break; } + } + out << endl; + }else { + m->mothurOut("[WARNING]: " + name + " is in your alignreport file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); + } }else {//still read just don't do anything with it removedCount++; From 884599708409bb13d4d73ffdb123303838e2ad6a Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 24 Sep 2015 16:42:06 -0400 Subject: [PATCH 048/135] Adds file, qfile, contigsfile and mapfile to rename.seqs Issue #132 --- source/commands/makecontigscommand.cpp | 130 ++++++-- source/commands/makecontigscommand.h | 6 +- source/commands/renameseqscommand.cpp | 562 ++++++++++++++++++++++----------- source/commands/renameseqscommand.h | 7 +- 4 files changed, 483 insertions(+), 222 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 1377fe00..8f414c82 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -7,6 +7,7 @@ // #include "makecontigscommand.h" +#include "renameseqscommand.h" //********************************************************************************************************************** vector MakeContigsCommand::setParameters(){ @@ -25,6 +26,7 @@ vector MakeContigsCommand::setParameters(){ CommandParameter pbdiffs("bdiffs", "Number", "", "0", "", "", "","",false,false,true); parameters.push_back(pbdiffs); CommandParameter ptdiffs("tdiffs", "Number", "", "0", "", "", "","",false,false); parameters.push_back(ptdiffs); CommandParameter preorient("checkorient", "Boolean", "", "F", "", "", "","",false,false,true); parameters.push_back(preorient); + CommandParameter prename("rename", "Boolean", "", "T", "", "", "","",false,false,true); parameters.push_back(prename); CommandParameter palign("align", "Multiple", "needleman-gotoh-kmer", "needleman", "", "", "","",false,false); parameters.push_back(palign); CommandParameter pallfiles("allfiles", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(pallfiles); CommandParameter ptrimoverlap("trimoverlap", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(ptrimoverlap); @@ -75,6 +77,7 @@ string MakeContigsCommand::getHelpString(){ helpString += "The match parameter allows you to specify the bonus for having the same base. The default is 1.0.\n"; helpString += "The mistmatch parameter allows you to specify the penalty for having different bases. The default is -1.0.\n"; helpString += "The checkorient parameter will check look for the reverse compliment of the barcode or primer in the sequence. If found the sequence is flipped. The default is false.\n"; + helpString += "The rename parameter will rename the sequence to create smaller file sizes. Default=T.\n"; helpString += "The deltaq parameter allows you to specify the delta allowed between quality scores of a mismatched base. For example in the overlap, if deltaq=5 and in the alignment seqA, pos 200 has a quality score of 30 and the same position in seqB has a quality score of 20, you take the base from seqA (30-20 >= 5). If the quality score in seqB is 28 then the base in the consensus will be an N (30-28<5) The default is 6.\n"; helpString += "The gapopen parameter allows you to specify the penalty for opening a gap in an alignment. The default is -2.0.\n"; helpString += "The gapextend parameter allows you to specify the penalty for extending a gap in an alignment. The default is -1.0.\n"; @@ -390,6 +393,9 @@ MakeContigsCommand::MakeContigsCommand(string option) { temp = validParameter.validFile(parameters, "checkorient", false); if (temp == "not found") { temp = "F"; } reorient = m->isTrue(temp); + temp = validParameter.validFile(parameters, "rename", false); if (temp == "not found") { temp = "T"; } + renameSeq = m->isTrue(temp); + qual_score.resize(47); qual_score[0] = -2; qual_score[1] = -1.58147; qual_score[2] = -0.996843; qual_score[3] = -0.695524; qual_score[4] = -0.507676; qual_score[5] = -0.38013; qual_score[6] = -0.289268; qual_score[7] = -0.222552; qual_score[8] = -0.172557; qual_score[9] = -0.134552; qual_score[10] = -0.105361; qual_score[11] = -0.0827653; qual_score[12] = -0.0651742; qual_score[13] = -0.0514183; qual_score[14] = -0.0406248; qual_score[15] = -0.0321336; qual_score[16] = -0.0254397; qual_score[17] = -0.0201544; qual_score[18] = -0.0159759; qual_score[19] = -0.0126692; qual_score[20] = -0.0100503; qual_score[21] = -0.007975; qual_score[22] = -0.00632956; qual_score[23] = -0.00502447; qual_score[24] = -0.00398902; qual_score[25] = -0.00316729; qual_score[26] = -0.00251505; qual_score[27] = -0.00199726; qual_score[28] = -0.00158615; qual_score[29] = -0.00125972; qual_score[30] = -0.0010005; qual_score[31] = -0.000794644; qual_score[32] = -0.000631156; qual_score[33] = -0.000501313; qual_score[34] = -0.000398186; qual_score[35] = -0.000316278; qual_score[36] = -0.00025122; qual_score[37] = -0.000199546; qual_score[38] = -0.000158502; qual_score[39] = -0.0001259; qual_score[40] = -0.000100005; qual_score[41] = -7.9436e-05; qual_score[42] = -6.30977e-05; qual_score[43] = -5.012e-05; qual_score[44] = -3.98115e-05; qual_score[45] = -3.16233e-05; qual_score[46] = -2.51192e-05; @@ -410,17 +416,83 @@ int MakeContigsCommand::execute(){ map totalGroupCounts; int start = time(NULL); longestBase = 1000; group = ""; + vector theseOutputFileNames; if (file != "") { - numReads = processMultipleFileOption(totalGroupCounts); + numReads = processMultipleFileOption(totalGroupCounts, theseOutputFileNames); }else if ((ffastqfile != "") || (ffastafile != "")) { - numReads = processSingleFileOption(totalGroupCounts); + numReads = processSingleFileOption(totalGroupCounts, theseOutputFileNames); }else { return 0; } m->mothurOut("It took " + toString(time(NULL) - start) + " secs to process " + toString(numReads) + " sequences.\n"); if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } + + if (renameSeq) { + + string inputString = ""; + if (theseOutputFileNames[0] != "") { inputString += "fasta=" + theseOutputFileNames[0]; } + if (theseOutputFileNames[1] != "") { inputString += ", qfile=" + theseOutputFileNames[1]; } + if (theseOutputFileNames[2] != "") { inputString += ", contigsreport=" + theseOutputFileNames[2]; } + if (theseOutputFileNames[3] != "") { inputString += ", group=" + theseOutputFileNames[3]; } + + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running rename.seqs to reduce file sizes: rename.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* renameSeqsCommand = new RenameSeqsCommand(inputString); + renameSeqsCommand->execute(); + + map > filenames = renameSeqsCommand->getOutputFiles(); + + delete renameSeqsCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + if (theseOutputFileNames[0] != "") { + outFastaFile = filenames["fasta"][0]; m->renameFile(outFastaFile, theseOutputFileNames[0]); + outputNames.push_back(theseOutputFileNames[0]); outputTypes["fasta"].push_back(theseOutputFileNames[0]); + } + if (theseOutputFileNames[1] != "") { + outQualFile = filenames["qfile"][0]; m->renameFile(outQualFile, theseOutputFileNames[1]); + outputNames.push_back(theseOutputFileNames[1]); outputTypes["qfile"].push_back(theseOutputFileNames[1]); + } + if (theseOutputFileNames[2] != "") { + outMisMatchFile = filenames["contigsreport"][0]; m->renameFile(outMisMatchFile, theseOutputFileNames[2]); + outputNames.push_back(theseOutputFileNames[2]); outputTypes["contigsreport"].push_back(theseOutputFileNames[2]); + } + cout << theseOutputFileNames[3] << '\t' << outputGroupFileName << endl; + if (theseOutputFileNames[3] != "") { + outputGroupFileName = filenames["group"][0]; m->renameFile(outputGroupFileName, theseOutputFileNames[3]); + outputNames.push_back(theseOutputFileNames[3]); outputTypes["group"].push_back(theseOutputFileNames[3]); + } + } + + string currentFasta = ""; + itTypes = outputTypes.find("fasta"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { currentFasta = (itTypes->second)[0]; m->setFastaFile(currentFasta); } + } + + string currentGroup = ""; + itTypes = outputTypes.find("group"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { currentGroup = (itTypes->second)[0]; m->setGroupFile(currentGroup); } + } + + string currentQual = ""; + itTypes = outputTypes.find("qfile"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { currentQual = (itTypes->second)[0]; m->setQualFile(currentQual); } + } + + string currentReport = ""; + itTypes = outputTypes.find("report"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { currentReport = (itTypes->second)[0]; } + } + //output group counts m->mothurOutEndLine(); int total = 0; @@ -432,18 +504,6 @@ int MakeContigsCommand::execute(){ if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - string currentFasta = ""; - itTypes = outputTypes.find("fasta"); - if (itTypes != outputTypes.end()) { - if ((itTypes->second).size() != 0) { currentFasta = (itTypes->second)[0]; m->setFastaFile(currentFasta); } - } - - string currentGroup = ""; - itTypes = outputTypes.find("group"); - if (itTypes != outputTypes.end()) { - if ((itTypes->second).size() != 0) { currentGroup = (itTypes->second)[0]; m->setGroupFile(currentGroup); } - } - //output files created by command m->mothurOutEndLine(); m->mothurOut("Output File Names: "); m->mothurOutEndLine(); @@ -458,7 +518,7 @@ int MakeContigsCommand::execute(){ } } //********************************************************************************************************************** -unsigned long long MakeContigsCommand::processSingleFileOption(map& totalGroupCounts) { +unsigned long long MakeContigsCommand::processSingleFileOption(map& totalGroupCounts, vector& theseOutputFileNames) { try { bool hasQual = false; unsigned long long numReads = 0; @@ -638,16 +698,20 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& if (file == "") { totalGroupCounts = groupCounts; - outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); + if (!renameSeq) { outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); } + theseOutputFileNames.push_back(outFastaFile); outputNames.push_back(outScrapFastaFile); outputTypes["fasta"].push_back(outScrapFastaFile); if (hasQual) { - outputNames.push_back(outQualFile); outputTypes["qfile"].push_back(outQualFile); + if (!renameSeq) { outputNames.push_back(outQualFile); outputTypes["qfile"].push_back(outQualFile); } + theseOutputFileNames.push_back(outQualFile); outputNames.push_back(outScrapQualFile); outputTypes["qfile"].push_back(outScrapQualFile); - } - outputNames.push_back(outMisMatchFile); outputTypes["report"].push_back(outMisMatchFile); + }else { theseOutputFileNames.push_back(""); } + if (!renameSeq) { outputNames.push_back(outMisMatchFile); outputTypes["report"].push_back(outMisMatchFile); } + theseOutputFileNames.push_back(outMisMatchFile); if (createFileGroup || createOligosGroup) { - outputNames.push_back(outputGroupFileName); outputTypes["group"].push_back(outputGroupFileName); - } + if (!renameSeq) { outputNames.push_back(outputGroupFileName); outputTypes["group"].push_back(outputGroupFileName); } + theseOutputFileNames.push_back(outputGroupFileName); + }else { theseOutputFileNames.push_back(""); } } m->mothurOut("Done.\n"); delete oligos; @@ -660,7 +724,7 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& } } //********************************************************************************************************************** -unsigned long long MakeContigsCommand::processMultipleFileOption(map& totalGroupCounts) { +unsigned long long MakeContigsCommand::processMultipleFileOption(map& totalGroupCounts, vector& theseOutputFileNames) { try { unsigned long long numReads = 0; @@ -687,17 +751,23 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(mapopenOutputFile(compositeScrapFastaFile, outCSFasta); outCSFasta.close(); m->openOutputFile(compositeScrapQualFile, outCSQual); outCSQual.close(); m->openOutputFile(compositeMisMatchFile, outCMisMatch); outCMisMatch.close(); - outputNames.push_back(compositeFastaFile); outputTypes["fasta"].push_back(compositeFastaFile); - outputNames.push_back(compositeQualFile); outputTypes["qfile"].push_back(compositeQualFile); - outputNames.push_back(compositeMisMatchFile); outputTypes["report"].push_back(compositeMisMatchFile); + if (!renameSeq) { + outputNames.push_back(compositeFastaFile); outputTypes["fasta"].push_back(compositeFastaFile); + outputNames.push_back(compositeQualFile); outputTypes["qfile"].push_back(compositeQualFile); + outputNames.push_back(compositeMisMatchFile); outputTypes["report"].push_back(compositeMisMatchFile); + } outputNames.push_back(compositeScrapFastaFile); outputTypes["fasta"].push_back(compositeScrapFastaFile); outputNames.push_back(compositeScrapQualFile); outputTypes["qfile"].push_back(compositeScrapQualFile); + theseOutputFileNames.push_back(compositeFastaFile); + theseOutputFileNames.push_back(compositeQualFile); + theseOutputFileNames.push_back(compositeMisMatchFile); + //read file vector< vector > fileInputs = readFileNames(file); if (gz) { - numReads = createProcessesGroups(fileInputs, compositeGroupFile, compositeFastaFile, compositeScrapFastaFile, compositeQualFile, compositeScrapQualFile, compositeMisMatchFile, totalGroupCounts); + numReads = createProcessesGroups(fileInputs, compositeGroupFile, compositeFastaFile, compositeScrapFastaFile, compositeQualFile, compositeScrapQualFile, compositeMisMatchFile, totalGroupCounts); theseOutputFileNames.push_back(compositeGroupFile); }else { for (int l = 0; l < fileInputs.size(); l++) { int startTime = time(NULL); @@ -714,9 +784,10 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(map temp; //run file as if it was a single - int thisNumReads = processSingleFileOption(groupCounts); + int thisNumReads = processSingleFileOption(groupCounts, temp); numReads += thisNumReads; //append to combo files @@ -724,7 +795,7 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(mapopenOutputFile(compositeGroupFile, outCGroup); outCGroup.close(); - outputNames.push_back(compositeGroupFile); outputTypes["group"].push_back(compositeGroupFile); + outputNames.push_back(compositeGroupFile); outputTypes["group"].push_back(compositeGroupFile); theseOutputFileNames.push_back(compositeGroupFile); } m->appendFiles(outputGroupFileName, compositeGroupFile); if (!allFiles) { m->mothurRemove(outputGroupFileName); } @@ -735,7 +806,8 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(mapfirst] = itGroups->second; } //new group create it in totalGroups else { itTemp->second += itGroups->second; } //existing group, update total } - } + }else if (l == 0) { theseOutputFileNames.push_back(""); } + if (l == 0) { m->appendFiles(outMisMatchFile, compositeMisMatchFile); } else { m->appendFilesWithoutHeaders(outMisMatchFile, compositeMisMatchFile); } m->appendFiles(outFastaFile, compositeFastaFile); diff --git a/source/commands/makecontigscommand.h b/source/commands/makecontigscommand.h index 7676705f..fe30053b 100644 --- a/source/commands/makecontigscommand.h +++ b/source/commands/makecontigscommand.h @@ -60,7 +60,7 @@ class MakeContigsCommand : public Command { private: char delim; - bool abort, allFiles, trimOverlap, createFileGroup, createOligosGroup, makeCount, noneOk, reorient, gz; + bool abort, allFiles, trimOverlap, createFileGroup, createOligosGroup, makeCount, noneOk, reorient, gz, renameSeq; string outputDir, ffastqfile, rfastqfile, align, oligosfile, rfastafile, ffastafile, rqualfile, fqualfile, findexfile, rindexfile, file, format, inputDir; string outFastaFile, outQualFile, outScrapFastaFile, outScrapQualFile, outMisMatchFile, outputGroupFileName, group; float match, misMatch, gapOpen, gapExtend; @@ -77,8 +77,8 @@ class MakeContigsCommand : public Command { bool checkName(Sequence& forward, Sequence& reverse); bool checkName(QualityScores& forward, QualityScores& reverse); bool checkName(Sequence& forward, QualityScores& reverse); - unsigned long long processMultipleFileOption(map&); - unsigned long long processSingleFileOption(map&); + unsigned long long processMultipleFileOption(map&, vector&); + unsigned long long processSingleFileOption(map&, vector&); int loadQmatchValues(vector< vector >&, vector< vector >&); #ifdef USE_BOOST bool read(Sequence&, Sequence&, QualityScores*&, QualityScores*&, QualityScores*& savedFQual, QualityScores*& savedRQual, Sequence&, Sequence&, char, boost::iostreams::filtering_istream&, boost::iostreams::filtering_istream&, boost::iostreams::filtering_istream&, boost::iostreams::filtering_istream&, string, string); diff --git a/source/commands/renameseqscommand.cpp b/source/commands/renameseqscommand.cpp index dd787ce8..7406436e 100644 --- a/source/commands/renameseqscommand.cpp +++ b/source/commands/renameseqscommand.cpp @@ -10,14 +10,19 @@ #include "sequence.hpp" #include "groupmap.h" #include "counttable.h" +#include "qualityscores.h" //********************************************************************************************************************** vector RenameSeqsCommand::setParameters(){ try { - CommandParameter pfasta("fasta", "InputTypes", "", "", "none", "none", "none","fasta",false,true,true); parameters.push_back(pfasta); - CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "none","",false,false,true); parameters.push_back(pname); - CommandParameter pcount("count", "InputTypes", "", "", "NameCount-CountGroup", "GroupCount", "none","",false,false,true); parameters.push_back(pcount); - CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "GroupCount", "none","",false,false,true); parameters.push_back(pgroup); + CommandParameter pfile("file", "InputTypes", "", "", "fileFasta-file", "fileFasta", "none","fasta",false,false,true); parameters.push_back(pfile); + CommandParameter pmap("map", "InputTypes", "", "", "none", "none", "none","fasta",false,false,true); parameters.push_back(pmap); + CommandParameter pfasta("fasta", "InputTypes", "", "", "fileFasta-file", "fileFasta", "none","fasta",false,false,true); parameters.push_back(pfasta); + CommandParameter pqfile("qfile", "InputTypes", "", "", "file", "none", "none","qfile",false,false,true); parameters.push_back(pqfile); + CommandParameter pcontigsreport("contigsreport", "InputTypes", "", "", "file", "none", "none","contigsreport",false,false,true); parameters.push_back(pcontigsreport); + CommandParameter pname("name", "InputTypes", "", "", "NameCount-file", "none", "none","name",false,false,true); parameters.push_back(pname); + CommandParameter pcount("count", "InputTypes", "", "", "NameCount-CountGroup-file", "none", "none","count",false,false,true); parameters.push_back(pcount); + CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup-file", "none", "none","group",false,false,true); parameters.push_back(pgroup); CommandParameter pdelim("delim", "String", "", "_", "", "", "","",false,false); parameters.push_back(pdelim); CommandParameter pplacement("placement", "Multiple", "front-back", "back", "", "", "","",false,false); parameters.push_back(pplacement); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); @@ -37,10 +42,13 @@ vector RenameSeqsCommand::setParameters(){ string RenameSeqsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The rename.seqs command reads a fastafile and groupfile or count file with an optional namefile. It creates files with the sequence names concatenated with the group."; - helpString += "The rename.seqs command parameters are fasta, name, group, count, placement, delim. Fasta and group or count are required, unless a current file is available for both.\n"; - helpString += "The placement parameter allows you to indicate whether you would like the group name appended to the front or back of the sequence name. Options are front or back. Default=back.\n"; - helpString += "The delim parameter allow you to enter the character or characters you would like to separate the sequence name from the group name. Default='_'.\n"; + helpString += "The rename.seqs command reads a fastafile or file file and renames the sequences using a count. Optionally you can add a groupfile or count file with an optional namefile. Then it will create files with the sequence names concatenated with the group."; + helpString += "The rename.seqs command parameters are fasta, name, group, count, qfile, placement, contigsreport and delim. Fasta is required, unless a current file is available for both.\n"; + helpString += "The qfile allows you to provide an associated quality file.\n"; + helpString += "The contigsreport allows you to provide an associated contigsreport file.\n"; + helpString += "The file option allows you to provide a 1 or 2 column file. The first column contains a fasta file and the optional second column can be a group name. If there is a second column, all sequences in the fasta file will be assigned to that group. This can be helpful when renaming data separated into samples. \n"; + helpString += "The placement parameter allows you to indicate whether you would like the group name appended to the front or back of the sequence number. Options are front or back. Default=back.\n"; + helpString += "The delim parameter allow you to enter the character or characters you would like to separate the sequence number from the group name. Default='_'.\n"; helpString += "The rename.seqs command should be in the following format: \n"; helpString += "The rename.seqs command should be in the following format: \n"; helpString += "rename.seqs(fasta=yourFastaFile, group=yourGroupFile) \n"; @@ -58,10 +66,13 @@ string RenameSeqsCommand::getOutputPattern(string type) { try { string pattern = ""; - if (type == "fasta") { pattern = "[filename],renamed,[extension]"; } - else if (type == "name") { pattern = "[filename],renamed,[extension]"; } - else if (type == "group") { pattern = "[filename],renamed,[extension]"; } - else if (type == "count") { pattern = "[filename],renamed,[extension]"; } + if (type == "fasta") { pattern = "[filename],renamed,[extension]"; } + else if (type == "name") { pattern = "[filename],renamed,[extension]"; } + else if (type == "group") { pattern = "[filename],renamed,[extension]"; } + else if (type == "count") { pattern = "[filename],renamed,[extension]"; } + else if (type == "qfile") { pattern = "[filename],renamed,[extension]"; } + else if (type == "contigsreport") { pattern = "[filename],renamed,[extension]"; } + else if (type == "map") { pattern = "[filename],renamed_map"; } else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } return pattern; @@ -77,10 +88,13 @@ RenameSeqsCommand::RenameSeqsCommand(){ abort = true; calledHelp = true; setParameters(); vector tempOutNames; - outputTypes["fasta"] = tempOutNames; + outputTypes["fasta"] = tempOutNames; outputTypes["name"] = tempOutNames; outputTypes["group"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["map"] = tempOutNames; + outputTypes["qfile"] = tempOutNames; + outputTypes["contigsreport"] = tempOutNames; } catch(exception& e) { m->errorOut(e, "RenameSeqsCommand", "RenameSeqsCommand"); @@ -115,6 +129,9 @@ RenameSeqsCommand::RenameSeqsCommand(string option) { outputTypes["name"] = tempOutNames; outputTypes["group"] = tempOutNames; outputTypes["count"] = tempOutNames; + outputTypes["map"] = tempOutNames; + outputTypes["qfile"] = tempOutNames; + outputTypes["contigsreport"] = tempOutNames; //if the user changes the input directory command factory will send this info to us in the output parameter string inputDir = validParameter.validFile(parameters, "inputdir", false); @@ -152,6 +169,38 @@ RenameSeqsCommand::RenameSeqsCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["count"] = inputDir + it->second; } } + + it = parameters.find("qfile"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["qfile"] = inputDir + it->second; } + } + + it = parameters.find("contigsreport"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["contigsreport"] = inputDir + it->second; } + } + + it = parameters.find("map"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["map"] = inputDir + it->second; } + } + + it = parameters.find("file"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["file"] = inputDir + it->second; } + } } //if the user changes the output directory command factory will send this info to us in the output parameter @@ -160,11 +209,23 @@ RenameSeqsCommand::RenameSeqsCommand(string option) { //check for required parameters fastaFile = validParameter.validFile(parameters, "fasta", true); if (fastaFile == "not open") { abort = true; } - else if (fastaFile == "not found") { - fastaFile = m->getFastaFile(); - if (fastaFile != "") { m->mothurOut("Using " + fastaFile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } - else { m->mothurOut("You have no current fastafile and the fasta parameter is required."); m->mothurOutEndLine(); abort = true; } - }else { m->setFastaFile(fastaFile); } + else if (fastaFile == "not found") { fastaFile = ""; } + else { m->setFastaFile(fastaFile); } + + fileFile = validParameter.validFile(parameters, "file", true); + if (fileFile == "not open") { abort = true; } + else if (fileFile == "not found") { fileFile = ""; } + else { m->setFileFile(fileFile); } + + if ((fastaFile == "") && (fileFile == "")) { + fastaFile = m->getFastaFile(); + if (fastaFile != "") { m->mothurOut("Using " + fastaFile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } + else { + fileFile = m->getFileFile(); + if (fileFile != "") { m->mothurOut("Using " + fileFile + " as input file for the file parameter."); m->mothurOutEndLine(); } + else { m->mothurOut("You have no current fastafile or file file and the fasta or file parameter is required."); m->mothurOutEndLine(); abort = true; } + } + } groupfile = validParameter.validFile(parameters, "group", true); if (groupfile == "not open") { abort = true; } @@ -174,35 +235,35 @@ RenameSeqsCommand::RenameSeqsCommand(string option) { countfile = validParameter.validFile(parameters, "count", true); if (countfile == "not open") { countfile = ""; abort = true; } else if (countfile == "not found") { countfile = ""; } - else { - m->setCountTableFile(countfile); - CountTable temp; - if (!temp.testGroups(countfile)) { m->mothurOut("[ERROR]: Your count file does not have group info, aborting.\n"); abort=true; } - } + else { m->setCountTableFile(countfile); } nameFile = validParameter.validFile(parameters, "name", true); if (nameFile == "not open") { abort = true; } else if (nameFile == "not found"){ nameFile =""; } else { m->setNameFile(nameFile); } - //look for current files - if ((groupfile == "") && (countfile == "")) { - groupfile = m->getGroupFile(); - if (groupfile != "") { m->mothurOut("Using " + groupfile + " as input file for the group parameter."); m->mothurOutEndLine(); } - else { - countfile = m->getCountTableFile(); - if (countfile != "") { - m->mothurOut("Using " + countfile + " as input file for the count parameter."); m->mothurOutEndLine(); } - CountTable temp; - if (!temp.testGroups(countfile)) { m->mothurOut("[ERROR]: Your count file does not have group info, aborting.\n"); abort=true; } - else { - m->mothurOut("[ERROR]: You need to provide a groupfile or countfile."); m->mothurOutEndLine(); - abort = true; - } - } - } + qualfile = validParameter.validFile(parameters, "qfile", true); + if (qualfile == "not open") { abort = true; } + else if (qualfile == "not found"){ qualfile =""; } + else { m->setQualFile(qualfile); } + + mapFile = validParameter.validFile(parameters, "map", true); + if (mapFile == "not open") { abort = true; } + else if (mapFile == "not found"){ mapFile = ""; } + + contigsfile = validParameter.validFile(parameters, "contigsreport", true); + if (contigsfile == "not open") { abort = true; } + else if (contigsfile == "not found"){ contigsfile = ""; } if ((countfile != "") && (nameFile != "")) { m->mothurOut("You must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; } + + if ((fileFile != "") && (fastaFile != "")) { m->mothurOut("You must enter ONLY ONE of the following: file or fasta."); m->mothurOutEndLine(); abort = true; } + + if ((countfile != "") && (groupfile != "")) { m->mothurOut("You must enter ONLY ONE of the following: count or group."); m->mothurOutEndLine(); abort = true; } + + if ((fileFile != "") && ((nameFile != "") || (groupfile != "") || (qualfile != "") || (contigsfile != "") || (fileFile != "") || (fastaFile != "")) ) { + m->mothurOut("The file option cannot be used with any other files except the map file."); m->mothurOutEndLine(); abort = true; + } placement = validParameter.validFile(parameters, "placement", false); if (placement == "not found") { placement = "back"; } if ((placement == "front") || (placement == "back")) { } @@ -230,175 +291,160 @@ int RenameSeqsCommand::execute() { if (abort == true) { if (calledHelp) { return 0; } return 2; } - //prepare filenames and open files - string thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(fastaFile); } - string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile)); - map variables; - variables["[filename]"] = outFastaFile; - variables["[extension]"] = m->getExtension(fastaFile); - outFastaFile = getOutputFileName("fasta", variables); - outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); - - ofstream outFasta; - m->openOutputFile(outFastaFile, outFasta); - - ifstream in; - m->openInputFile(fastaFile, in); - - GroupMap* groupMap = NULL; - CountTable* countTable = NULL; - if (groupfile != "") { - groupMap = new GroupMap(groupfile); - - int groupError = groupMap->readMap(); - if (groupError == 1) { delete groupMap; return 0; } - vector allGroups = groupMap->getNamesOfGroups(); - m->setAllGroups(allGroups); - }else{ - countTable = new CountTable(); - countTable->readTable(countfile, true, false); - } - - while (!in.eof()) { - if (m->control_pressed) { break; } + if (fileFile != "") { processFile(); } + else { - Sequence seq(in); m->gobble(in); - string group = "not found"; - if (groupfile != "") { group = groupMap->getGroup(seq.getName()); } - else { - vector groups = countTable->getGroups(seq.getName()); - if (group.size() == 0) { group = "not found"; } - else { - group = groups[0]; - for (int i = 1; i < groups.size(); i++) { group += "_" + groups[i]; } - } + //prepare filenames and open files + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(fastaFile); } + string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile)); + map variables; + variables["[filename]"] = outFastaFile; + variables["[extension]"] = m->getExtension(fastaFile); + outFastaFile = getOutputFileName("fasta", variables); + outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); + + string outMapFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile)); + variables["[filename]"] = outMapFile; + outMapFile = getOutputFileName("map", variables); + outputNames.push_back(outMapFile); outputTypes["map"].push_back(outMapFile); + ofstream outMap; m->openOutputFile(outMapFile, outMap); + + ofstream outName; + map > nameMap; + if (nameFile != "") { + thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(nameFile); } + string outNameFile = thisOutputDir + m->getRootName(m->getSimpleName(nameFile)); + variables["[filename]"] = outNameFile; + variables["[extension]"] = m->getExtension(nameFile); + outNameFile = getOutputFileName("name", variables); + outputNames.push_back(outNameFile); outputTypes["name"].push_back(outNameFile); + m->openOutputFile(outNameFile, outName); + m->readNames(nameFile, nameMap); } - if (group == "not found") { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your file, please correct.\n"); m->control_pressed = true; } - else { - string newName = ""; - if (placement == "back") { newName = seq.getName() + delim + group; } - else { newName = group + delim + seq.getName(); } + + ofstream outGroup; + if (groupfile != "") { + thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(groupfile); } + string outGroupFile = thisOutputDir + m->getRootName(m->getSimpleName(groupfile)); + variables["[filename]"] = outGroupFile; + variables["[extension]"] = m->getExtension(groupfile); + outGroupFile = getOutputFileName("group", variables); + outputNames.push_back(outGroupFile); outputTypes["group"].push_back(outGroupFile); - //rename sequence in count table - if (countfile != "") { countTable->renameSeq(seq.getName(), newName); } + m->openOutputFile(outGroupFile, outGroup); + } + + ofstream outFasta; + m->openOutputFile(outFastaFile, outFasta); + + ifstream in; + m->openInputFile(fastaFile, in); + + GroupMap* groupMap = NULL; + CountTable* countTable = NULL; + bool hasGroups = false; + vector allGroups; allGroups.push_back(""); + m->setAllGroups(allGroups); + if (groupfile != "") { + groupMap = new GroupMap(groupfile); - seq.setName(newName); - seq.printSequence(outFasta); + int groupError = groupMap->readMap(); + if (groupError == 1) { delete groupMap; return 0; } + allGroups = groupMap->getNamesOfGroups(); + m->setAllGroups(allGroups); + hasGroups = true; + }else if (countfile != "") { + countTable = new CountTable(); + countTable->readTable(countfile, true, false); + hasGroups = countTable->hasGroupInfo(); + if (hasGroups) { allGroups = countTable->getNamesOfGroups(); allGroups.push_back("Multi"); m->setAllGroups(allGroups); } } - } - in.close(); - - if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (countTable != NULL) { delete countTable; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - - bool notDone = true; - if (nameFile != "") { - thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(nameFile); } - string outNameFile = thisOutputDir + m->getRootName(m->getSimpleName(nameFile)); - variables["[filename]"] = outNameFile; - variables["[extension]"] = m->getExtension(nameFile); - outNameFile = getOutputFileName("group", variables); - outputNames.push_back(outNameFile); outputTypes["name"].push_back(outNameFile); - ofstream outName; - m->openOutputFile(outNameFile, outName); + //set up for reads + map counts; for (int i = 0; i < allGroups.size(); i++) { counts[allGroups[i]] = 1; } + map old2NewNameMap; + bool fillOld2NewNameMap = false; + if ((qualfile != "") || (contigsfile != "")) { fillOld2NewNameMap = true; } - map > nameMap; - m->readNames(nameFile, nameMap); - - //process name file changing names - for (map >::iterator it = nameMap.begin(); it != nameMap.end(); it++) { - for (int i = 0; i < (it->second).size()-1; i++) { - if (m->control_pressed) { break; } - string group = groupMap->getGroup((it->second)[i]); - if (group == "not found") { m->mothurOut("[ERROR]: " + (it->second)[i] + " is not in your group file, please correct.\n"); m->control_pressed = true; } - else { - string newName = ""; - if (placement == "back") { newName = (it->second)[i] + delim + group; } - else { newName = group + delim + (it->second)[i]; } - groupMap->renameSeq((it->second)[i], newName); //change in group file - (it->second)[i] = newName; //change in namefile - } - if (i == 0) { outName << (it->second)[i] << '\t' << (it->second)[i] << ','; } - else { outName << (it->second)[i] << ','; } - } + while (!in.eof()) { + if (m->control_pressed) { break; } - //print last one - if ((it->second).size() == 1) { - string group = groupMap->getGroup((it->second)[0]); - if (group == "not found") { m->mothurOut("[ERROR]: " + (it->second)[0] + " is not in your group file, please correct.\n"); m->control_pressed = true; } - else { - string newName = ""; - if (placement == "back") { newName = (it->second)[0] + delim + group; } - else { newName = group + delim + (it->second)[0]; } - groupMap->renameSeq((it->second)[0], newName); //change in group file - (it->second)[0] = newName; //change in namefile - - outName << (it->second)[0] << '\t' << (it->second)[0] << endl; + Sequence seq(in); m->gobble(in); + + vector dups; + if (nameFile != "") { + map >::iterator it = nameMap.find(seq.getName()); + if (it == nameMap.end()) { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name file, please correct.\n"); m->control_pressed = true; } + else { dups = it->second; } + }else { dups.push_back(seq.getName()); } + + for (int i = 0; i < dups.size(); i++) { + string group = ""; + if (groupfile != "") { + group = groupMap->getGroup(dups[i]); + }else if (countfile != "") { + if (hasGroups) { + vector groups = countTable->getGroups(seq.getName()); + if (group.size() == 0) { group = "not found"; } + else if (group.size() == 1) { group = groups[0]; } + else { group = "Multi"; } + } } - } - else { - string group = groupMap->getGroup((it->second)[(it->second).size()-1]); - if (group == "not found") { m->mothurOut("[ERROR]: " + (it->second)[(it->second).size()-1] + " is not in your group file, please correct.\n"); m->control_pressed = true; } + + if (group == "not found") { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your file, please correct.\n"); m->control_pressed = true; } else { - string newName = ""; - if (placement == "back") { newName = (it->second)[(it->second).size()-1] + delim + group; } - else { newName = group + delim + (it->second)[(it->second).size()-1]; } - groupMap->renameSeq((it->second)[(it->second).size()-1], newName); //change in group file - (it->second)[(it->second).size()-1] = newName; //change in namefile - - outName << (it->second)[(it->second).size()-1] << endl; + string newName = toString(counts[group]); counts[group]++; + if ((placement == "back") && (group != "")) { newName += delim + group; } + else if (group != "") { newName = group + delim + newName; } + + if (i == 0) { + seq.setName(newName); + seq.printSequence(outFasta); + } + + if (countfile != "") { countTable->renameSeq(seq.getName(), newName); } + if (groupfile != "") { outGroup << newName << '\t' << group << endl; } + + if ((nameFile != "") && (i == 0)) { outName << newName << '\t' << newName; } + else { outName << "," << newName; } + + outMap << newName << '\t' << dups[i] << endl; + + if (fillOld2NewNameMap) { old2NewNameMap[dups[i]] = newName; } } } + if (nameFile != "") { outName << endl; } } - notDone = false; - outName.close(); - } - - if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (countTable != NULL) { delete countTable; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - - if (groupfile != "") { - if (notDone) { - vector seqs = groupMap->getNamesSeqs(); - for (int i = 0; i < seqs.size(); i++) { - if (m->control_pressed) { break; } - string group = groupMap->getGroup(seqs[i]); - string newName = ""; - if (placement == "back") { newName = seqs[i] + delim + group; } - else { newName = group + delim + seqs[i]; } - groupMap->renameSeq(seqs[i], newName); - } + in.close(); + outMap.close(); + if (nameFile != "") { outName.close(); } + + if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (countTable != NULL) { delete countTable; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } + + + if (groupfile != "") { outGroup.close(); } + else if (countfile != "") { + thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(countfile); } + string outCountFile = thisOutputDir + m->getRootName(m->getSimpleName(countfile)); + variables["[filename]"] = outCountFile; + variables["[extension]"] = m->getExtension(countfile); + outCountFile = getOutputFileName("count", variables); + outputNames.push_back(outCountFile); outputTypes["count"].push_back(outCountFile); + countTable->printTable(outCountFile); } - thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(groupfile); } - string outGroupFile = thisOutputDir + m->getRootName(m->getSimpleName(groupfile)); - variables["[filename]"] = outGroupFile; - variables["[extension]"] = m->getExtension(groupfile); - outGroupFile = getOutputFileName("group", variables); - outputNames.push_back(outGroupFile); outputTypes["group"].push_back(outGroupFile); + if (groupMap != NULL) { delete groupMap; } + if (countTable != NULL) { delete countTable; } - ofstream outGroup; - m->openOutputFile(outGroupFile, outGroup); - groupMap->print(outGroup); - outGroup.close(); - - }else { - thisOutputDir = outputDir; - if (outputDir == "") { thisOutputDir += m->hasPath(countfile); } - string outCountFile = thisOutputDir + m->getRootName(m->getSimpleName(countfile)); - variables["[filename]"] = outCountFile; - variables["[extension]"] = m->getExtension(countfile); - outCountFile = getOutputFileName("count", variables); - outputNames.push_back(outCountFile); outputTypes["count"].push_back(outCountFile); - countTable->printTable(outCountFile); + if (qualfile != "") { readQual(old2NewNameMap); } + if (contigsfile != "") { readContigs(old2NewNameMap); } } - if (groupMap != NULL) { delete groupMap; } - if (countTable != NULL) { delete countTable; } - if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } m->mothurOutEndLine(); @@ -427,6 +473,11 @@ int RenameSeqsCommand::execute() { if (itTypes != outputTypes.end()) { if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setCountTableFile(current); } } + + itTypes = outputTypes.find("qfile"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setQualFile(current); } + } return 0; } @@ -435,5 +486,138 @@ int RenameSeqsCommand::execute() { exit(1); } } +//********************************************************************************************************************** +int RenameSeqsCommand::readQual(map& oldMap){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(qualfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(qualfile)); + variables["[extension]"] = m->getExtension(qualfile); + string outputFileName = getOutputFileName("qfile", variables); + ofstream out; + m->openOutputFile(outputFileName, out); + outputNames.push_back(outputFileName); outputTypes["qfile"].push_back(outputFileName); + cout << "qual = " << outputFileName << endl; + ifstream in; + m->openInputFile(qualfile, in); + + map::iterator it; + + while(!in.eof()){ + if (m->control_pressed) { break; } + + QualityScores qual(in); m->gobble(in); + + it = oldMap.find(qual.getName()); + if (it == oldMap.end()) { + m->mothurOut("[ERROR]: " + qual.getName() + " is not in your quality file, please correct.\n"); m->control_pressed = true; + }else { + qual.setName(it->second); + } + + qual.printQScores(out); + } + in.close(); + out.close(); + + return 0; + + } + catch(exception& e) { + m->errorOut(e, "RenameSeqsCommand", "readQual"); + exit(1); + } +} +//********************************************************************************************************************** +int RenameSeqsCommand::readContigs(map& oldMap){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(contigsfile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(contigsfile)); + variables["[extension]"] = m->getExtension(contigsfile); + string outputFileName = getOutputFileName("contigsreport", variables); + ofstream out; + m->openOutputFile(outputFileName, out); + outputNames.push_back(outputFileName); outputTypes["contigsreport"].push_back(outputFileName); + cout << "contigsreport = " << outputFileName << endl; + + ifstream in; + m->openInputFile(contigsfile, in); + out << (m->getline(in)) << endl; //skip headers + + map::iterator it; + int length, OLength, thisOStart, thisOEnd, numMisMatches, numNs; + string name; + while (!in.eof()) { + + if (m->control_pressed) { break; } + + //seqname start end nbases ambigs polymer numSeqs + in >> name >> length >> OLength >> thisOStart >> thisOEnd >> numMisMatches >> numNs; m->gobble(in); + + it = oldMap.find(name); + if (it == oldMap.end()) { + m->mothurOut("[ERROR]: " + name + " is not in your contigs report file, please correct.\n"); m->control_pressed = true; + }else { + name = it->second; + } + + out << name << '\t' << length << '\t' << OLength << '\t' << thisOStart << '\t' << thisOEnd << '\t' << numMisMatches << '\t' << numNs << endl; + } + in.close(); + out.close(); + + + return 0; + } + catch(exception& e) { + m->errorOut(e, "RenameSeqsCommand", "readContigs"); + exit(1); + } +} +//********************************************************************************************************************** +int RenameSeqsCommand::readFasta(string thisFastaFile, map& oldMap){ + try { + string thisOutputDir = outputDir; + if (outputDir == "") { thisOutputDir += m->hasPath(thisFastaFile); } + map variables; + variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(thisFastaFile)); + variables["[extension]"] = m->getExtension(thisFastaFile); + string outputFileName = getOutputFileName("fasta", variables); + ofstream out; + m->openOutputFile(outputFileName, out); + outputNames.push_back(outputFileName); outputTypes["fasta"].push_back(outputFileName); + cout << "fasta = " << outputFileName << endl; + + ifstream in; + m->openInputFile(thisFastaFile, in); + + map::iterator it; + while (!in.eof()) { + + if (m->control_pressed) { break; } + + Sequence seq(in); m->gobble(in); + + it = oldMap.find(seq.getName()); + if (it == oldMap.end()) { + m->mothurOut("[ERROR]: " + seq.getName() + " is not in your fasta file, please correct.\n"); m->control_pressed = true; + }else { + seq.setName(it->second); + } + seq.printSequence(out); + } + in.close(); + out.close(); + + return 0; + } + catch(exception& e) { + m->errorOut(e, "RenameSeqsCommand", "readFasta"); + exit(1); + } +} /**************************************************************************************/ diff --git a/source/commands/renameseqscommand.h b/source/commands/renameseqscommand.h index 7f96408f..bee26597 100644 --- a/source/commands/renameseqscommand.h +++ b/source/commands/renameseqscommand.h @@ -34,11 +34,16 @@ class RenameSeqsCommand : public Command { private: - string fastaFile, nameFile, groupfile, outputDir, placement, delim, countfile; + string fastaFile, nameFile, groupfile, outputDir, placement, delim, countfile, qualfile, contigsfile, fileFile, mapFile; vector outputNames; bool abort; map nameMap; + int readQual(map&); + int readContigs(map&); + int readFasta(string, map&); + int processFile(); + }; From 29549a79eb837866050739dd428132ac268fd53b Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 25 Sep 2015 13:33:41 -0400 Subject: [PATCH 049/135] Allows for restoring original names - rename.seqs Issue #132 --- source/commands/renameseqscommand.cpp | 58 ++++++++++++++++++++++++++++++----- source/commands/renameseqscommand.h | 3 +- 2 files changed, 53 insertions(+), 8 deletions(-) diff --git a/source/commands/renameseqscommand.cpp b/source/commands/renameseqscommand.cpp index 7406436e..ff259fdf 100644 --- a/source/commands/renameseqscommand.cpp +++ b/source/commands/renameseqscommand.cpp @@ -291,7 +291,10 @@ int RenameSeqsCommand::execute() { if (abort == true) { if (calledHelp) { return 0; } return 2; } - if (fileFile != "") { processFile(); } + map renameMap; + if (mapFile != "") { readMapFile(renameMap); } + + if (fileFile != "") { processFile(renameMap); } else { //prepare filenames and open files @@ -346,6 +349,7 @@ int RenameSeqsCommand::execute() { GroupMap* groupMap = NULL; CountTable* countTable = NULL; + bool hasGroups = false; vector allGroups; allGroups.push_back(""); m->setAllGroups(allGroups); @@ -384,6 +388,7 @@ int RenameSeqsCommand::execute() { for (int i = 0; i < dups.size(); i++) { string group = ""; + if (groupfile != "") { group = groupMap->getGroup(dups[i]); }else if (countfile != "") { @@ -397,9 +402,17 @@ int RenameSeqsCommand::execute() { if (group == "not found") { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your file, please correct.\n"); m->control_pressed = true; } else { - string newName = toString(counts[group]); counts[group]++; - if ((placement == "back") && (group != "")) { newName += delim + group; } - else if (group != "") { newName = group + delim + newName; } + //get new name + string newName = ""; + if (mapFile != "") { + map::iterator itMap = renameMap.find(dups[i]); + if (itMap == renameMap.end()) { m->mothurOut("[ERROR]: " + dups[i] + " is not in your map file, please correct.\n"); m->control_pressed = true;} + else { newName = itMap->second; } + }else { + newName = toString(counts[group]); counts[group]++; + if ((placement == "back") && (group != "")) { newName += delim + group; } + else if (group != "") { newName = group + delim + newName; } + } if (i == 0) { seq.setName(newName); @@ -422,6 +435,7 @@ int RenameSeqsCommand::execute() { in.close(); outMap.close(); if (nameFile != "") { outName.close(); } + renameMap.clear(); if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (countTable != NULL) { delete countTable; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } @@ -498,7 +512,7 @@ int RenameSeqsCommand::readQual(map& oldMap){ ofstream out; m->openOutputFile(outputFileName, out); outputNames.push_back(outputFileName); outputTypes["qfile"].push_back(outputFileName); - cout << "qual = " << outputFileName << endl; + ifstream in; m->openInputFile(qualfile, in); @@ -541,7 +555,6 @@ int RenameSeqsCommand::readContigs(map& oldMap){ ofstream out; m->openOutputFile(outputFileName, out); outputNames.push_back(outputFileName); outputTypes["contigsreport"].push_back(outputFileName); - cout << "contigsreport = " << outputFileName << endl; ifstream in; m->openInputFile(contigsfile, in); @@ -589,7 +602,6 @@ int RenameSeqsCommand::readFasta(string thisFastaFile, map& oldM ofstream out; m->openOutputFile(outputFileName, out); outputNames.push_back(outputFileName); outputTypes["fasta"].push_back(outputFileName); - cout << "fasta = " << outputFileName << endl; ifstream in; m->openInputFile(thisFastaFile, in); @@ -619,5 +631,37 @@ int RenameSeqsCommand::readFasta(string thisFastaFile, map& oldM exit(1); } } +//********************************************************************************************************************** +int RenameSeqsCommand::readMapFile(map& readMap){ + try { + ifstream in; + m->openInputFile(mapFile, in); + + map::iterator it; + string oldname, newname; + while (!in.eof()) { + + if (m->control_pressed) { break; } + + in >> oldname; m->gobble(in); + in >> newname; m->gobble(in); + + it = readMap.find(oldname); + if (it != readMap.end()) { + m->mothurOut("[ERROR]: " + oldname + " is already in your map file. Sequence names must be unique, quitting.\n"); m->control_pressed = true; + }else { + readMap[oldname] = newname; + } + + } + in.close(); + + return 0; + } + catch(exception& e) { + m->errorOut(e, "RenameSeqsCommand", "readMapFile"); + exit(1); + } +} /**************************************************************************************/ diff --git a/source/commands/renameseqscommand.h b/source/commands/renameseqscommand.h index bee26597..29791598 100644 --- a/source/commands/renameseqscommand.h +++ b/source/commands/renameseqscommand.h @@ -42,7 +42,8 @@ class RenameSeqsCommand : public Command { int readQual(map&); int readContigs(map&); int readFasta(string, map&); - int processFile(); + int processFile(map&); + int readMapFile(map&); }; From 36d03c17eae02a532e940ef6c8cdec7d1dc9b3a0 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 25 Sep 2015 13:37:45 -0400 Subject: [PATCH 050/135] Removes USE_COMPRESSION code Non-compliant with later GCC version, standard Debian Redundant with the addition of Boost library --- makefile | 10 ---- source/mothurout.cpp | 162 ++------------------------------------------------- 2 files changed, 4 insertions(+), 168 deletions(-) diff --git a/makefile b/makefile index c381e0a2..5f210a9b 100644 --- a/makefile +++ b/makefile @@ -10,7 +10,6 @@ 64BIT_VERSION ?= yes USEREADLINE ?= yes -USECOMPRESSION ?= no USEBOOST ?= yes MOTHUR_FILES="\"Enter_your_default_path_here\"" RELEASE_DATE = "\"7/27/2015\"" @@ -45,15 +44,6 @@ ifeq ($(strip $(USEBOOST)),yes) LIBS += -lboost_iostreams endif - -# if you want to enable reading and writing of compressed files, set to yes. -# The default is no. this may only work on unix-like systems, not for windows. - - -ifeq ($(strip $(USECOMPRESSION)),yes) - CXXFLAGS += -DUSE_COMPRESSION -endif - # # INCLUDE directories for mothur # diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 9b485098..74ef40be 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -675,30 +675,11 @@ string MothurOut::getline(ifstream& fileHandle) { } } /***********************************************************************/ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION -inline bool endsWith(string s, const char * suffix){ - size_t suffixLength = strlen(suffix); - return s.size() >= suffixLength && s.substr(s.size() - suffixLength, suffixLength).compare(suffix) == 0; -} -#endif -#endif - string MothurOut::getRootName(string longName){ try { string rootName = longName; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - if (endsWith(rootName, ".gz") || endsWith(rootName, ".bz2")) { - int pos = rootName.find_last_of('.'); - rootName = rootName.substr(0, pos); - cerr << "shortening " << longName << " to " << rootName << "\n"; - } -#endif -#endif if(rootName.find_last_of(".") != rootName.npos){ int pos = rootName.find_last_of('.')+1; rootName = rootName.substr(0, pos); @@ -1118,30 +1099,7 @@ int MothurOut::openInputFile(string fileName, ifstream& fileHandle, string m){ try { //get full path name string completeFileName = getFullPathName(fileName); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - // check for gzipped or bzipped file - if (endsWith(completeFileName, ".gz") || endsWith(completeFileName, ".bz2")) { - string tempName = string(tmpnam(0)); - mkfifo(tempName.c_str(), 0666); - int fork_result = fork(); - if (fork_result < 0) { - cerr << "Error forking.\n"; - exit(1); - } else if (fork_result == 0) { - string command = (endsWith(completeFileName, ".gz") ? "zcat " : "bzcat ") + completeFileName + string(" > ") + tempName; - cerr << "Decompressing " << completeFileName << " via temporary named pipe " << tempName << "\n"; - system(command.c_str()); - cerr << "Done decompressing " << completeFileName << "\n"; - mothurRemove(tempName); - exit(EXIT_SUCCESS); - } else { - cerr << "waiting on child process " << fork_result << "\n"; - completeFileName = tempName; - } - } -#endif -#endif + fileHandle.open(completeFileName.c_str()); if(!fileHandle) { //mothurOut("[ERROR]: Could not open " + completeFileName); mothurOutEndLine(); @@ -1165,30 +1123,6 @@ int MothurOut::openInputFile(string fileName, ifstream& fileHandle){ //get full path name string completeFileName = getFullPathName(fileName); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - // check for gzipped or bzipped file - if (endsWith(completeFileName, ".gz") || endsWith(completeFileName, ".bz2")) { - string tempName = string(tmpnam(0)); - mkfifo(tempName.c_str(), 0666); - int fork_result = fork(); - if (fork_result < 0) { - cerr << "Error forking.\n"; - exit(1); - } else if (fork_result == 0) { - string command = (endsWith(completeFileName, ".gz") ? "zcat " : "bzcat ") + completeFileName + string(" > ") + tempName; - cerr << "Decompressing " << completeFileName << " via temporary named pipe " << tempName << "\n"; - system(command.c_str()); - cerr << "Done decompressing " << completeFileName << "\n"; - mothurRemove(tempName); - exit(EXIT_SUCCESS); - } else { - cerr << "waiting on child process " << fork_result << "\n"; - completeFileName = tempName; - } - } -#endif -#endif fileHandle.open(completeFileName.c_str()); if(!fileHandle) { @@ -1215,30 +1149,6 @@ int MothurOut::openInputFileBinary(string fileName, ifstream& fileHandle){ //get full path name string completeFileName = getFullPathName(fileName); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - // check for gzipped or bzipped file - if (endsWith(completeFileName, ".gz") || endsWith(completeFileName, ".bz2")) { - string tempName = string(tmpnam(0)); - mkfifo(tempName.c_str(), 0666); - int fork_result = fork(); - if (fork_result < 0) { - cerr << "Error forking.\n"; - exit(1); - } else if (fork_result == 0) { - string command = (endsWith(completeFileName, ".gz") ? "zcat " : "bzcat ") + completeFileName + string(" > ") + tempName; - cerr << "Decompressing " << completeFileName << " via temporary named pipe " << tempName << "\n"; - system(command.c_str()); - cerr << "Done decompressing " << completeFileName << "\n"; - mothurRemove(tempName); - exit(EXIT_SUCCESS); - } else { - cerr << "waiting on child process " << fork_result << "\n"; - completeFileName = tempName; - } - } -#endif -#endif fileHandle.open(completeFileName.c_str(), ios::binary); if(!fileHandle) { @@ -1265,31 +1175,7 @@ int MothurOut::openInputFileBinary(string fileName, ifstream& fileHandle, string //get full path name string completeFileName = getFullPathName(fileName); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - // check for gzipped or bzipped file - if (endsWith(completeFileName, ".gz") || endsWith(completeFileName, ".bz2")) { - string tempName = string(tmpnam(0)); - mkfifo(tempName.c_str(), 0666); - int fork_result = fork(); - if (fork_result < 0) { - cerr << "Error forking.\n"; - exit(1); - } else if (fork_result == 0) { - string command = (endsWith(completeFileName, ".gz") ? "zcat " : "bzcat ") + completeFileName + string(" > ") + tempName; - cerr << "Decompressing " << completeFileName << " via temporary named pipe " << tempName << "\n"; - system(command.c_str()); - cerr << "Done decompressing " << completeFileName << "\n"; - mothurRemove(tempName); - exit(EXIT_SUCCESS); - } else { - cerr << "waiting on child process " << fork_result << "\n"; - completeFileName = tempName; - } - } -#endif -#endif - + fileHandle.open(completeFileName.c_str(), ios::binary); if(!fileHandle) { //mothurOut("[ERROR]: Could not open " + completeFileName); mothurOutEndLine(); @@ -1472,27 +1358,7 @@ int MothurOut::openOutputFile(string fileName, ofstream& fileHandle){ try { string completeFileName = getFullPathName(fileName); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - // check for gzipped file - if (endsWith(completeFileName, ".gz") || endsWith(completeFileName, ".bz2")) { - string tempName = string(tmpnam(0)); - mkfifo(tempName.c_str(), 0666); - cerr << "Compressing " << completeFileName << " via temporary named pipe " << tempName << "\n"; - int fork_result = fork(); - if (fork_result < 0) { - cerr << "Error forking.\n"; - exit(1); - } else if (fork_result == 0) { - string command = string(endsWith(completeFileName, ".gz") ? "gzip" : "bzip2") + " -v > " + completeFileName + string(" < ") + tempName; - system(command.c_str()); - exit(0); - } else { - completeFileName = tempName; - } - } -#endif -#endif + fileHandle.open(completeFileName.c_str(), ios::trunc); if(!fileHandle) { mothurOut("[ERROR]: Could not open " + completeFileName); mothurOutEndLine(); @@ -1514,27 +1380,7 @@ int MothurOut::openOutputFileBinary(string fileName, ofstream& fileHandle){ try { string completeFileName = getFullPathName(fileName); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -#ifdef USE_COMPRESSION - // check for gzipped file - if (endsWith(completeFileName, ".gz") || endsWith(completeFileName, ".bz2")) { - string tempName = string(tmpnam(0)); - mkfifo(tempName.c_str(), 0666); - cerr << "Compressing " << completeFileName << " via temporary named pipe " << tempName << "\n"; - int fork_result = fork(); - if (fork_result < 0) { - cerr << "Error forking.\n"; - exit(1); - } else if (fork_result == 0) { - string command = string(endsWith(completeFileName, ".gz") ? "gzip" : "bzip2") + " -v > " + completeFileName + string(" < ") + tempName; - system(command.c_str()); - exit(0); - } else { - completeFileName = tempName; - } - } -#endif -#endif + fileHandle.open(completeFileName.c_str(), ios::trunc | ios::binary); if(!fileHandle) { mothurOut("[ERROR]: Could not open " + completeFileName); mothurOutEndLine(); From 23d76dc5e8dc26dddbf13e1ac31b119f30f7dbf2 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 25 Sep 2015 14:21:18 -0400 Subject: [PATCH 051/135] Adds readFile function - rename.seqs Issue #132 --- source/commands/renameseqscommand.cpp | 110 ++++++++++++++++++++++++++++++++++ source/commands/renameseqscommand.h | 1 + 2 files changed, 111 insertions(+) diff --git a/source/commands/renameseqscommand.cpp b/source/commands/renameseqscommand.cpp index ff259fdf..841d60e0 100644 --- a/source/commands/renameseqscommand.cpp +++ b/source/commands/renameseqscommand.cpp @@ -663,5 +663,115 @@ int RenameSeqsCommand::readMapFile(map& readMap){ exit(1); } } +//********************************************************************************************************************** +int RenameSeqsCommand::processFile(map& readMap){ + try { + + vector > files = readFiles(); + + for (int i = 0; i < files.size(); i++) { + if (m->control_pressed) { break; } + + string thisFastaFile = (files[i].begin())->first; + string group = (files[i].begin())->second; + + string thisOutputDir = outputDir; + string outMapFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFastaFile)); + map variables; + variables["[filename]"] = outMapFile; + outMapFile = getOutputFileName("map", variables); + outputNames.push_back(outMapFile); outputTypes["map"].push_back(outMapFile); + ofstream outMap; m->openOutputFile(outMapFile, outMap); + + //prepare filenames and open files + if (outputDir == "") { thisOutputDir += m->hasPath(thisFastaFile); } + string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFastaFile)); + variables["[filename]"] = outFastaFile; + variables["[extension]"] = m->getExtension(thisFastaFile); + outFastaFile = getOutputFileName("fasta", variables); + outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); + + ofstream outFasta; + m->openOutputFile(outFastaFile, outFasta); + + ifstream in; + m->openInputFile(thisFastaFile, in); + + int count = 1; + while (!in.eof()) { + if (m->control_pressed) { break; } + + Sequence seq(in); m->gobble(in); + + //get new name + string newName = ""; + if (mapFile != "") { + map::iterator itMap = readMap.find(seq.getName()); + if (itMap == readMap.end()) { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your map file, please correct.\n"); m->control_pressed = true;} + else { newName = itMap->second; } + }else { + newName = toString(count); count++; + if ((placement == "back") && (group != "")) { newName += delim + group; } + else if (group != "") { newName = group + delim + newName; } + } + + if (i == 0) { + seq.setName(newName); + seq.printSequence(outFasta); + } + + outMap << newName << '\t' << seq.getName() << endl; + } + in.close(); + outMap.close(); + outFasta.close(); + } + + + return 0; + } + catch(exception& e) { + m->errorOut(e, "RenameSeqsCommand", "processFile"); + exit(1); + } +} +//********************************************************************************************************************** +vector > RenameSeqsCommand::readFiles(){ + try { + + vector > files; + + ifstream in; + m->openInputFile(fileFile, in); + + while (!in.eof()) { + if (m->control_pressed) { break; } + + string line = m->getline(in); m->gobble(in); + vector pieces = m->splitWhiteSpace(line); + + string group = ""; + string thisFileName; thisFileName = ""; + if (pieces.size() == 1) { + thisFileName = pieces[0]; + }else if (pieces.size() == 2) { + thisFileName = pieces[0]; + group = pieces[1]; + }else { + m->mothurOut("[ERROR]: Your file contains " + toString(pieces.size()) + " columns. The file option allows you to provide a 1 or 2 column file. The first column contains a fasta file and the optional second column can be a group name. If there is a second column, all sequences in the fasta file will be assigned to that group. This can be helpful when renaming data separated into samples.\n"); m->control_pressed = true; + } + + map temp; temp[thisFileName] = group; + files.push_back(temp); + } + in.close(); + + return files; + } + catch(exception& e) { + m->errorOut(e, "RenameSeqsCommand", "readFiles"); + exit(1); + } +} /**************************************************************************************/ diff --git a/source/commands/renameseqscommand.h b/source/commands/renameseqscommand.h index 29791598..f55fac9a 100644 --- a/source/commands/renameseqscommand.h +++ b/source/commands/renameseqscommand.h @@ -44,6 +44,7 @@ class RenameSeqsCommand : public Command { int readFasta(string, map&); int processFile(map&); int readMapFile(map&); + vector< map > readFiles(); }; From 01f98608e8d8771c640305117ced4fae3da1e231 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 28 Sep 2015 18:02:17 -0400 Subject: [PATCH 052/135] Adds more options to rename.seqs to work with make.contigs Issue #132 --- source/commands/makecontigscommand.cpp | 133 ++++++++++++++++++++++++++++----- source/commands/makecontigscommand.h | 18 +++-- source/commands/renameseqscommand.cpp | 68 ++++++++++------- 3 files changed, 165 insertions(+), 54 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 8f414c82..9c72a312 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -417,11 +417,12 @@ int MakeContigsCommand::execute(){ int start = time(NULL); longestBase = 1000; group = ""; vector theseOutputFileNames; + map theseAllFileNames; if (file != "") { - numReads = processMultipleFileOption(totalGroupCounts, theseOutputFileNames); + numReads = processMultipleFileOption(totalGroupCounts, theseOutputFileNames, theseAllFileNames); }else if ((ffastqfile != "") || (ffastafile != "")) { - numReads = processSingleFileOption(totalGroupCounts, theseOutputFileNames); + numReads = processSingleFileOption(totalGroupCounts, theseOutputFileNames, theseAllFileNames); }else { return 0; } m->mothurOut("It took " + toString(time(NULL) - start) + " secs to process " + toString(numReads) + " sequences.\n"); @@ -430,6 +431,12 @@ int MakeContigsCommand::execute(){ if (renameSeq) { + //do we have qualfiles + bool hasQualFiles = false; + itTypes = outputTypes.find("qfile"); + if (itTypes != outputTypes.end()) { hasQualFiles = true; } + + outputNames.clear(); outputTypes.clear(); string inputString = ""; if (theseOutputFileNames[0] != "") { inputString += "fasta=" + theseOutputFileNames[0]; } @@ -462,11 +469,59 @@ int MakeContigsCommand::execute(){ outMisMatchFile = filenames["contigsreport"][0]; m->renameFile(outMisMatchFile, theseOutputFileNames[2]); outputNames.push_back(theseOutputFileNames[2]); outputTypes["contigsreport"].push_back(theseOutputFileNames[2]); } - cout << theseOutputFileNames[3] << '\t' << outputGroupFileName << endl; + if (theseOutputFileNames[3] != "") { outputGroupFileName = filenames["group"][0]; m->renameFile(outputGroupFileName, theseOutputFileNames[3]); outputNames.push_back(theseOutputFileNames[3]); outputTypes["group"].push_back(theseOutputFileNames[3]); } + + //print out file for rename.seqs command + string tempFileFile = "makeContigsRenameFileForAllFIles.temp"; + ofstream outTemp; + m->openOutputFile(tempFileFile, outTemp); +////////////////////////check these scrap files to make sure they aren't blank ///////////////////// + //add scrap qual and scrap fasta + if (theseOutputFileNames[4] != "") { outTemp << "fasta" << '\t' << theseOutputFileNames[4] << "scrap" << endl; } + if (theseOutputFileNames[5] != "") { outTemp << "qfile" << '\t' << theseOutputFileNames[5] << "scrap" << endl; } + + if (allFiles && (theseAllFileNames.size() != 0)) { + for (map::iterator it = theseAllFileNames.begin(); it != theseAllFileNames.end(); it++) { + outTemp << "fasta" << '\t' << it->first << '\t' << it->second << endl; + if (hasQualFiles) { + string qualFilename = m->getRootName(it->first); + qualFilename += ".qual"; + outTemp << "qfile" << '\t' << qualFilename << '\t' << it->second << endl; + } + } + } + outTemp.close(); + + inputString = "file=" + tempFileFile; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running rename.seqs to reduce file sizes: rename.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* renameSeqsAllFilesCommand = new RenameSeqsCommand(inputString); + renameSeqsAllFilesCommand->execute(); + + filenames = renameSeqsAllFilesCommand->getOutputFiles(); + + delete renameSeqsAllFilesCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + if (theseOutputFileNames[4] != "") { + outScrapFastaFile = filenames["fasta"][0]; m->renameFile(outScrapFastaFile, theseOutputFileNames[4]); + outputNames.push_back(theseOutputFileNames[4]); outputTypes["fasta"].push_back(theseOutputFileNames[4]); + } + if (theseOutputFileNames[5] != "") { + outScrapQualFile = filenames["qfile"][0]; m->renameFile(outScrapQualFile, theseOutputFileNames[5]); + outputNames.push_back(theseOutputFileNames[5]); outputTypes["qfile"].push_back(theseOutputFileNames[5]); + } + + /////////////////////// rename renamed allfiles to original filenames //////////////////////////////// + ///////////////// add to outputNames and outputTypes //////////////////// + } string currentFasta = ""; @@ -518,7 +573,7 @@ int MakeContigsCommand::execute(){ } } //********************************************************************************************************************** -unsigned long long MakeContigsCommand::processSingleFileOption(map& totalGroupCounts, vector& theseOutputFileNames) { +unsigned long long MakeContigsCommand::processSingleFileOption(map& totalGroupCounts, vector& theseOutputFileNames, map& theseAllFileNames) { try { bool hasQual = false; unsigned long long numReads = 0; @@ -668,6 +723,9 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& outputNames = outputNames2; for (it = uniqueFastaNames.begin(); it != uniqueFastaNames.end(); it++) { + //save for rename + if (renameSeq) { theseAllFileNames[it->first] = it->second; } + ifstream in; m->openInputFile(it->first, in); @@ -698,13 +756,11 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& if (file == "") { totalGroupCounts = groupCounts; - if (!renameSeq) { outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); } + if (!renameSeq) { outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); outputNames.push_back(outScrapFastaFile); outputTypes["fasta"].push_back(outScrapFastaFile); } theseOutputFileNames.push_back(outFastaFile); - outputNames.push_back(outScrapFastaFile); outputTypes["fasta"].push_back(outScrapFastaFile); if (hasQual) { - if (!renameSeq) { outputNames.push_back(outQualFile); outputTypes["qfile"].push_back(outQualFile); } + if (!renameSeq) { outputNames.push_back(outQualFile); outputTypes["qfile"].push_back(outQualFile); outputNames.push_back(outScrapQualFile); outputTypes["qfile"].push_back(outScrapQualFile); } theseOutputFileNames.push_back(outQualFile); - outputNames.push_back(outScrapQualFile); outputTypes["qfile"].push_back(outScrapQualFile); }else { theseOutputFileNames.push_back(""); } if (!renameSeq) { outputNames.push_back(outMisMatchFile); outputTypes["report"].push_back(outMisMatchFile); } theseOutputFileNames.push_back(outMisMatchFile); @@ -712,6 +768,9 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& if (!renameSeq) { outputNames.push_back(outputGroupFileName); outputTypes["group"].push_back(outputGroupFileName); } theseOutputFileNames.push_back(outputGroupFileName); }else { theseOutputFileNames.push_back(""); } + theseOutputFileNames.push_back(outScrapFastaFile); + if (hasQual) { theseOutputFileNames.push_back(outScrapQualFile); } + else { theseOutputFileNames.push_back(""); } } m->mothurOut("Done.\n"); delete oligos; @@ -724,7 +783,7 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& } } //********************************************************************************************************************** -unsigned long long MakeContigsCommand::processMultipleFileOption(map& totalGroupCounts, vector& theseOutputFileNames) { +unsigned long long MakeContigsCommand::processMultipleFileOption(map& totalGroupCounts, vector& theseOutputFileNames, map& theseAllFileNames) { try { unsigned long long numReads = 0; @@ -755,9 +814,9 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(map > fileInputs = readFileNames(file); if (gz) { - numReads = createProcessesGroups(fileInputs, compositeGroupFile, compositeFastaFile, compositeScrapFastaFile, compositeQualFile, compositeScrapQualFile, compositeMisMatchFile, totalGroupCounts); theseOutputFileNames.push_back(compositeGroupFile); + numReads = createProcessesGroups(fileInputs, compositeGroupFile, compositeFastaFile, compositeScrapFastaFile, compositeQualFile, compositeScrapQualFile, compositeMisMatchFile, totalGroupCounts, theseAllFileNames); theseOutputFileNames.push_back(compositeGroupFile); }else { for (int l = 0; l < fileInputs.size(); l++) { int startTime = time(NULL); @@ -787,7 +846,7 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(map temp; //run file as if it was a single - int thisNumReads = processSingleFileOption(groupCounts, temp); + int thisNumReads = processSingleFileOption(groupCounts, temp, theseAllFileNames); numReads += thisNumReads; //append to combo files @@ -831,6 +890,10 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(mapmothurOutEndLine(); m->mothurOut("It took " + toString(time(NULL) - startTime) + " secs to assemble " + toString(thisNumReads) + " reads.\n"); m->mothurOutEndLine(); } } + + theseOutputFileNames.push_back(compositeScrapFastaFile); + theseOutputFileNames.push_back(compositeScrapQualFile); + return numReads; } catch(exception& e) { @@ -840,7 +903,7 @@ unsigned long long MakeContigsCommand::processMultipleFileOption(map > fileInputs, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts) { +unsigned long long MakeContigsCommand::createProcessesGroups(vector< vector > fileInputs, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts, map& theseAllFileNames) { try { unsigned long long num = 0; vector processIDS; @@ -877,7 +940,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vectormothurGetpid(process) + ".temp", compositeQualFile + m->mothurGetpid(process) + ".temp", compositeScrapQualFile + m->mothurGetpid(process) + ".temp", - compositeMisMatchFile + m->mothurGetpid(process) + ".temp", totalGroupCounts); + compositeMisMatchFile + m->mothurGetpid(process) + ".temp", totalGroupCounts, theseAllFileNames); //pass groupCounts to parent ofstream out; @@ -896,6 +959,13 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vectorfirst << '\t' << it->second << endl; } } + if (renameSeq) { + out << theseAllFileNames.size() << endl; + for (map::iterator it = theseAllFileNames.begin(); it != theseAllFileNames.end(); it++) { + out << it->first << '\t' << it->second << endl; + } + + } out.close(); exit(0); @@ -952,7 +1022,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vectormothurGetpid(process) + ".temp", compositeQualFile + m->mothurGetpid(process) + ".temp", compositeScrapQualFile + m->mothurGetpid(process) + ".temp", - compositeMisMatchFile + m->mothurGetpid(process) + ".temp", totalGroupCounts); + compositeMisMatchFile + m->mothurGetpid(process) + ".temp", totalGroupCounts, theseAllFileNames); //pass groupCounts to parent ofstream out; @@ -971,6 +1041,13 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vectorfirst << '\t' << it->second << endl; } } + if (renameSeq) { + out << theseAllFileNames.size() << endl; + for (map::iterator it = theseAllFileNames.begin(); it != theseAllFileNames.end(); it++) { + out << it->first << '\t' << it->second << endl; + } + + } out.close(); exit(0); @@ -982,7 +1059,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vector> tempNum; m->gobble(in); + if (tempNum != 0) { + for (int j = 0; j < tempNum; j++) { + string thisAllfilename, thisGroup; + in >> thisAllfilename; m->gobble(in); in >> thisGroup; m->gobble(in); + theseAllFileNames[thisAllfilename] = thisGroup; + } + } + } in.close(); m->mothurRemove(tempFile); } @@ -1043,14 +1130,14 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vectormothurOut("[ERROR]: " + it->first + " is in your fasta file more than once. Sequence names must be unique. please correct.\n"); } } } + //add in threads allfiles, if they exist + for (map::iterator it = pDataArray[i]->theseAllFileNames.begin(); it != pDataArray[i]->theseAllFileNames.end(); it++) { + theseAllFileNames[it->first] = it->second; + } CloseHandle(hThreadArray[i]); delete pDataArray[i]; } @@ -1106,7 +1197,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vector > fileInputs, int start, int end, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts) { +unsigned long long MakeContigsCommand::driverGroups(vector< vector > fileInputs, int start, int end, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts, map& theseAllFileNames) { try { unsigned long long numReads = 0; delim = '@'; @@ -1216,6 +1307,8 @@ unsigned long long MakeContigsCommand::driverGroups(vector< vector > fil outputNames = outputNames2; for (it = uniqueFastaNames.begin(); it != uniqueFastaNames.end(); it++) { + if (renameSeq) { theseAllFileNames[it->first] = it->second; } + ifstream in; m->openInputFile(it->first, in); diff --git a/source/commands/makecontigscommand.h b/source/commands/makecontigscommand.h index fe30053b..1a25065d 100644 --- a/source/commands/makecontigscommand.h +++ b/source/commands/makecontigscommand.h @@ -77,8 +77,8 @@ class MakeContigsCommand : public Command { bool checkName(Sequence& forward, Sequence& reverse); bool checkName(QualityScores& forward, QualityScores& reverse); bool checkName(Sequence& forward, QualityScores& reverse); - unsigned long long processMultipleFileOption(map&, vector&); - unsigned long long processSingleFileOption(map&, vector&); + unsigned long long processMultipleFileOption(map&, vector&, map&); + unsigned long long processSingleFileOption(map&, vector&, map&); int loadQmatchValues(vector< vector >&, vector< vector >&); #ifdef USE_BOOST bool read(Sequence&, Sequence&, QualityScores*&, QualityScores*&, QualityScores*& savedFQual, QualityScores*& savedRQual, Sequence&, Sequence&, char, boost::iostreams::filtering_istream&, boost::iostreams::filtering_istream&, boost::iostreams::filtering_istream&, boost::iostreams::filtering_istream&, string, string); @@ -88,8 +88,8 @@ class MakeContigsCommand : public Command { //main processing functions unsigned long long createProcesses(vector, vector, string, string, string, string, string, vector >, vector >, vector, vector, string); - unsigned long long createProcessesGroups(vector< vector >, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts); - unsigned long long driverGroups(vector >, int, int, string, string, string, string, string, string, map&); + unsigned long long createProcessesGroups(vector< vector >, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts, map&); + unsigned long long driverGroups(vector >, int, int, string, string, string, string, string, string, map&, map&); unsigned long long driver(vector files, vector qualOrIndexFiles, string outputFasta, string outputScrapFasta, string outputQual, string outputScrapQual, string outputMisMatches, vector > fastaFileNames, vector > qualFileNames, linePair, linePair, linePair, linePair, string); int convertProb(double qProb); vector< vector > readFileNames(string); @@ -115,9 +115,10 @@ struct contigsData { MothurOut* m; float match, misMatch, gapOpen, gapExtend; int count, insert, threadID, pdiffs, bdiffs, tdiffs, deltaq, kmerSize; - bool allFiles, createOligosGroup, createFileGroup, done, trimOverlap, reorient, gz; + bool allFiles, createOligosGroup, createFileGroup, done, trimOverlap, reorient, gz, renameSeqs; map groupCounts; map groupMap; + map theseAllFileNames; vector< vector > fileInputs; int start,end; string compositeGroupFile, compositeFastaFile, compositeScrapFastaFile, compositeQualFile, compositeScrapQualFile, compositeMisMatchFile; @@ -164,8 +165,9 @@ struct contigsData { delim = d; format = form; done=false; + renameSeqs = false; } - contigsData(string form, char d, string g, string al, string opd, MothurOut* mout, float ma, float misMa, float gapO, float gapE, int thr, int delt, string olig, bool ro, int pdf, int bdf, int tdf, int km, bool cg, bool cfg, bool all, bool to, int tid, vector< vector > fileI, int st, int ed, string compGroupFile, string compFastaFile, string compScrapFastaFile, string compQualFile, string compScrapQualFile, string compMisMatchFile, map tGroupCounts, map fGroup, bool gzb) { + contigsData(string form, char d, string g, string al, string opd, MothurOut* mout, float ma, float misMa, float gapO, float gapE, int thr, int delt, string olig, bool ro, int pdf, int bdf, int tdf, int km, bool cg, bool cfg, bool all, bool to, int tid, vector< vector > fileI, int st, int ed, string compGroupFile, string compFastaFile, string compScrapFastaFile, string compQualFile, string compScrapQualFile, string compMisMatchFile, map tGroupCounts, map fGroup, bool gzb, bool ren) { m = mout; match = ma; misMatch = misMa; @@ -203,6 +205,7 @@ struct contigsData { totalGroupCounts = tGroupCounts; file2Group = fGroup; gz = gzb; + renameSeqs = ren; } }; /**************************************************************************************************/ @@ -1614,6 +1617,9 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ pDataArray->outputNames = outputNames2; for (it = uniqueFastaNames.begin(); it != uniqueFastaNames.end(); it++) { + + if (pDataArray->renameSeq) { pDataArray->theseAllFileNames[it->first] = it->second; } + ifstream in; pDataArray->m->openInputFile(it->first, in); diff --git a/source/commands/renameseqscommand.cpp b/source/commands/renameseqscommand.cpp index 841d60e0..6e1593c0 100644 --- a/source/commands/renameseqscommand.cpp +++ b/source/commands/renameseqscommand.cpp @@ -46,7 +46,7 @@ string RenameSeqsCommand::getHelpString(){ helpString += "The rename.seqs command parameters are fasta, name, group, count, qfile, placement, contigsreport and delim. Fasta is required, unless a current file is available for both.\n"; helpString += "The qfile allows you to provide an associated quality file.\n"; helpString += "The contigsreport allows you to provide an associated contigsreport file.\n"; - helpString += "The file option allows you to provide a 1 or 2 column file. The first column contains a fasta file and the optional second column can be a group name. If there is a second column, all sequences in the fasta file will be assigned to that group. This can be helpful when renaming data separated into samples. \n"; + helpString += "The file option allows you to provide a 2 or 3 column file. The first column contains the file type: fasta or qfile. The second column is the filename, and the optional third column can be a group name. If there is a third column, all sequences in the file will be assigned to that group. This can be helpful when renaming data separated into samples. \n"; helpString += "The placement parameter allows you to indicate whether you would like the group name appended to the front or back of the sequence number. Options are front or back. Default=back.\n"; helpString += "The delim parameter allow you to enter the character or characters you would like to separate the sequence number from the group name. Default='_'.\n"; helpString += "The rename.seqs command should be in the following format: \n"; @@ -261,7 +261,7 @@ RenameSeqsCommand::RenameSeqsCommand(string option) { if ((countfile != "") && (groupfile != "")) { m->mothurOut("You must enter ONLY ONE of the following: count or group."); m->mothurOutEndLine(); abort = true; } - if ((fileFile != "") && ((nameFile != "") || (groupfile != "") || (qualfile != "") || (contigsfile != "") || (fileFile != "") || (fastaFile != "")) ) { + if ((fileFile != "") && ((nameFile != "") || (groupfile != "") || (qualfile != "") || (contigsfile != "") || (countfile != "") || (fastaFile != "")) ) { m->mothurOut("The file option cannot be used with any other files except the map file."); m->mothurOutEndLine(); abort = true; } @@ -672,11 +672,20 @@ int RenameSeqsCommand::processFile(map& readMap){ for (int i = 0; i < files.size(); i++) { if (m->control_pressed) { break; } - string thisFastaFile = (files[i].begin())->first; + string thisFile = ""; + string thisFileType = ""; string group = (files[i].begin())->second; + string temp = (files[i].begin())->first; + int pos = temp.find_first_of('-'); + if (pos == string::npos) { m->mothurOut("[Opps]: I should never get here...\n"); } + else { + thisFileType = temp.substr(0, pos); + thisFile = temp.substr(pos); + } + string thisOutputDir = outputDir; - string outMapFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFastaFile)); + string outMapFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFile)); map variables; variables["[filename]"] = outMapFile; outMapFile = getOutputFileName("map", variables); @@ -684,30 +693,34 @@ int RenameSeqsCommand::processFile(map& readMap){ ofstream outMap; m->openOutputFile(outMapFile, outMap); //prepare filenames and open files - if (outputDir == "") { thisOutputDir += m->hasPath(thisFastaFile); } - string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFastaFile)); - variables["[filename]"] = outFastaFile; - variables["[extension]"] = m->getExtension(thisFastaFile); - outFastaFile = getOutputFileName("fasta", variables); - outputNames.push_back(outFastaFile); outputTypes["fasta"].push_back(outFastaFile); + if (outputDir == "") { thisOutputDir += m->hasPath(thisFile); } + string outFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFile)); + variables["[filename]"] = outFile; + variables["[extension]"] = m->getExtension(thisFile); + outFile = getOutputFileName(thisFileType, variables); + outputNames.push_back(outFile); outputTypes[thisFileType].push_back(outFile); - ofstream outFasta; - m->openOutputFile(outFastaFile, outFasta); + ofstream out; + m->openOutputFile(outFile, out); ifstream in; - m->openInputFile(thisFastaFile, in); + m->openInputFile(thisFile, in); int count = 1; while (!in.eof()) { if (m->control_pressed) { break; } - Sequence seq(in); m->gobble(in); + Sequence* seq; QualityScores* qual; + string name = ""; + if (thisFileType == "fasta") { seq = new Sequence(in); name = seq->getName(); } + else if (thisFileType == "qfile") { qual = new QualityScores(in); name = qual->getName(); } + m->gobble(in); //get new name string newName = ""; if (mapFile != "") { - map::iterator itMap = readMap.find(seq.getName()); - if (itMap == readMap.end()) { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your map file, please correct.\n"); m->control_pressed = true;} + map::iterator itMap = readMap.find(name); + if (itMap == readMap.end()) { m->mothurOut("[ERROR]: " + name + " is not in your map file, please correct.\n"); m->control_pressed = true;} else { newName = itMap->second; } }else { newName = toString(count); count++; @@ -715,16 +728,15 @@ int RenameSeqsCommand::processFile(map& readMap){ else if (group != "") { newName = group + delim + newName; } } - if (i == 0) { - seq.setName(newName); - seq.printSequence(outFasta); - } - outMap << newName << '\t' << seq.getName() << endl; + if (thisFileType == "fasta") { seq->setName(newName); seq->printSequence(out); delete seq; } + if (thisFileType == "qfile") { qual->setName(newName); qual->printQScores(out); delete qual; } + + outMap << newName << '\t' << name << endl; } in.close(); outMap.close(); - outFasta.close(); + out.close(); } @@ -752,13 +764,13 @@ vector > RenameSeqsCommand::readFiles(){ string group = ""; string thisFileName; thisFileName = ""; - if (pieces.size() == 1) { - thisFileName = pieces[0]; - }else if (pieces.size() == 2) { - thisFileName = pieces[0]; - group = pieces[1]; + if (pieces.size() == 2) { + thisFileName = pieces[0]+"-"+pieces[1]; + }else if (pieces.size() == 3) { + thisFileName = pieces[0]+"-"+pieces[1]; + group = pieces[2]; }else { - m->mothurOut("[ERROR]: Your file contains " + toString(pieces.size()) + " columns. The file option allows you to provide a 1 or 2 column file. The first column contains a fasta file and the optional second column can be a group name. If there is a second column, all sequences in the fasta file will be assigned to that group. This can be helpful when renaming data separated into samples.\n"); m->control_pressed = true; + m->mothurOut("[ERROR]: Your file contains " + toString(pieces.size()) + " columns. TThe file option allows you to provide a 2 or 3 column file. The first column contains the file type: fasta or qfile. The second column is the filename, and the optional third column can be a group name. If there is a third column, all sequences in the file will be assigned to that group. This can be helpful when renaming data separated into samples.\n"); m->control_pressed = true; } map temp; temp[thisFileName] = group; From 096a1a4d35934c12dd4aa95e34ddb9d60080059f Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 29 Sep 2015 15:15:43 -0400 Subject: [PATCH 053/135] All files from make.contigs are automatically renamed. Issue #132 --- source/commands/makecontigscommand.cpp | 98 ++++++++++++++++++++++++---------- source/commands/renameseqscommand.cpp | 16 +++--- 2 files changed, 78 insertions(+), 36 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 9c72a312..d86b06a5 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -396,6 +396,8 @@ MakeContigsCommand::MakeContigsCommand(string option) { temp = validParameter.validFile(parameters, "rename", false); if (temp == "not found") { temp = "T"; } renameSeq = m->isTrue(temp); + if (allFiles && (oligosfile == "")) { m->mothurOut("You can only use the allfiles option with an oligos file.\n"); abort = true; } + qual_score.resize(47); qual_score[0] = -2; qual_score[1] = -1.58147; qual_score[2] = -0.996843; qual_score[3] = -0.695524; qual_score[4] = -0.507676; qual_score[5] = -0.38013; qual_score[6] = -0.289268; qual_score[7] = -0.222552; qual_score[8] = -0.172557; qual_score[9] = -0.134552; qual_score[10] = -0.105361; qual_score[11] = -0.0827653; qual_score[12] = -0.0651742; qual_score[13] = -0.0514183; qual_score[14] = -0.0406248; qual_score[15] = -0.0321336; qual_score[16] = -0.0254397; qual_score[17] = -0.0201544; qual_score[18] = -0.0159759; qual_score[19] = -0.0126692; qual_score[20] = -0.0100503; qual_score[21] = -0.007975; qual_score[22] = -0.00632956; qual_score[23] = -0.00502447; qual_score[24] = -0.00398902; qual_score[25] = -0.00316729; qual_score[26] = -0.00251505; qual_score[27] = -0.00199726; qual_score[28] = -0.00158615; qual_score[29] = -0.00125972; qual_score[30] = -0.0010005; qual_score[31] = -0.000794644; qual_score[32] = -0.000631156; qual_score[33] = -0.000501313; qual_score[34] = -0.000398186; qual_score[35] = -0.000316278; qual_score[36] = -0.00025122; qual_score[37] = -0.000199546; qual_score[38] = -0.000158502; qual_score[39] = -0.0001259; qual_score[40] = -0.000100005; qual_score[41] = -7.9436e-05; qual_score[42] = -6.30977e-05; qual_score[43] = -5.012e-05; qual_score[44] = -3.98115e-05; qual_score[45] = -3.16233e-05; qual_score[46] = -2.51192e-05; @@ -457,6 +459,9 @@ int MakeContigsCommand::execute(){ m->mothurCalling = false; m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + vector mapFiles = filenames["map"]; + for (int i = 0; i < mapFiles.size(); i++) { outputNames.push_back(mapFiles[i]); } + if (theseOutputFileNames[0] != "") { outFastaFile = filenames["fasta"][0]; m->renameFile(outFastaFile, theseOutputFileNames[0]); outputNames.push_back(theseOutputFileNames[0]); outputTypes["fasta"].push_back(theseOutputFileNames[0]); @@ -479,49 +484,82 @@ int MakeContigsCommand::execute(){ string tempFileFile = "makeContigsRenameFileForAllFIles.temp"; ofstream outTemp; m->openOutputFile(tempFileFile, outTemp); -////////////////////////check these scrap files to make sure they aren't blank ///////////////////// + //add scrap qual and scrap fasta - if (theseOutputFileNames[4] != "") { outTemp << "fasta" << '\t' << theseOutputFileNames[4] << "scrap" << endl; } - if (theseOutputFileNames[5] != "") { outTemp << "qfile" << '\t' << theseOutputFileNames[5] << "scrap" << endl; } + if (theseOutputFileNames[4] != "") { if (!m->isBlank(theseOutputFileNames[4])) { outTemp << "fasta" << '\t' << theseOutputFileNames[4] << '\t' << "scrap" << endl; } } + if (theseOutputFileNames[5] != "") { if (!m->isBlank(theseOutputFileNames[5])) {outTemp << "qfile" << '\t' << theseOutputFileNames[5] << '\t' << "scrap" << endl; } } if (allFiles && (theseAllFileNames.size() != 0)) { for (map::iterator it = theseAllFileNames.begin(); it != theseAllFileNames.end(); it++) { outTemp << "fasta" << '\t' << it->first << '\t' << it->second << endl; + string groupFilename = m->getRootName(it->first); + groupFilename += "contigs.groups"; + outTemp << "group" << '\t' << groupFilename << '\t' << it->second << endl; if (hasQualFiles) { string qualFilename = m->getRootName(it->first); - qualFilename += ".qual"; + qualFilename += "qual"; outTemp << "qfile" << '\t' << qualFilename << '\t' << it->second << endl; } } } outTemp.close(); - inputString = "file=" + tempFileFile; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - m->mothurOut("Running rename.seqs to reduce file sizes: rename.seqs(" + inputString + ")"); m->mothurOutEndLine(); - m->mothurCalling = true; - - Command* renameSeqsAllFilesCommand = new RenameSeqsCommand(inputString); - renameSeqsAllFilesCommand->execute(); - - filenames = renameSeqsAllFilesCommand->getOutputFiles(); - - delete renameSeqsAllFilesCommand; - m->mothurCalling = false; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - - if (theseOutputFileNames[4] != "") { - outScrapFastaFile = filenames["fasta"][0]; m->renameFile(outScrapFastaFile, theseOutputFileNames[4]); - outputNames.push_back(theseOutputFileNames[4]); outputTypes["fasta"].push_back(theseOutputFileNames[4]); - } - if (theseOutputFileNames[5] != "") { - outScrapQualFile = filenames["qfile"][0]; m->renameFile(outScrapQualFile, theseOutputFileNames[5]); - outputNames.push_back(theseOutputFileNames[5]); outputTypes["qfile"].push_back(theseOutputFileNames[5]); + if (!m->isBlank(tempFileFile)) { + inputString = "file=" + tempFileFile; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running rename.seqs to reduce file sizes: rename.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* renameSeqsAllFilesCommand = new RenameSeqsCommand(inputString); + renameSeqsAllFilesCommand->execute(); + + filenames = renameSeqsAllFilesCommand->getOutputFiles(); + + delete renameSeqsAllFilesCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + int countFasta = 0; + int countQual = 0; + if (theseOutputFileNames[4] != "") { + if (!m->isBlank(theseOutputFileNames[4])) { + outScrapFastaFile = filenames["fasta"][0]; m->renameFile(outScrapFastaFile, theseOutputFileNames[4]); + outputNames.push_back(theseOutputFileNames[4]); outputTypes["fasta"].push_back(theseOutputFileNames[4]); + countFasta++; + } + } + if (theseOutputFileNames[5] != "") { + if (!m->isBlank(theseOutputFileNames[5])) { + outScrapQualFile = filenames["qfile"][0]; m->renameFile(outScrapQualFile, theseOutputFileNames[5]); + outputNames.push_back(theseOutputFileNames[5]); outputTypes["qfile"].push_back(theseOutputFileNames[5]); + countQual++; + } + } + + vector mapFiles = filenames["map"]; cout << mapFiles.size() << endl; + for (int i = 0; i < mapFiles.size(); i++) { outputNames.push_back(mapFiles[i]); cout << mapFiles[i] << endl; } + + //rename renamed allfiles to original filenames and add to outputNames and outputTypes + int countGroups = 0; + if (allFiles && (theseAllFileNames.size() != 0)) { + for (map::iterator it = theseAllFileNames.begin(); it != theseAllFileNames.end(); it++) { + m->renameFile(filenames["fasta"][countFasta], it->first); countFasta++; + outputNames.push_back(it->first); outputTypes["fasta"].push_back(it->first); + + string groupFilename = m->getRootName(it->first); + groupFilename += "contigs.groups"; + m->renameFile(filenames["group"][countGroups], groupFilename); countGroups++; + outputNames.push_back(groupFilename); outputTypes["group"].push_back(groupFilename); + + if (hasQualFiles) { + string qualFilename = m->getRootName(it->first); + qualFilename += "qual"; + m->renameFile(filenames["qfile"][countQual], qualFilename); countQual++; + outputNames.push_back(qualFilename); outputTypes["qfile"].push_back(qualFilename); + } + } + } } - - /////////////////////// rename renamed allfiles to original filenames //////////////////////////////// - ///////////////// add to outputNames and outputTypes //////////////////// - } string currentFasta = ""; @@ -731,7 +769,9 @@ unsigned long long MakeContigsCommand::processSingleFileOption(map& ofstream out; variables["[filename]"] = thisOutputDir + m->getRootName(m->getSimpleName(it->first)); + cout << variables["[filename]"] << endl; string thisGroupName = getOutputFileName("group",variables); outputNames.push_back(thisGroupName); outputTypes["group"].push_back(thisGroupName); + m->openOutputFile(thisGroupName, out); while (!in.eof()){ diff --git a/source/commands/renameseqscommand.cpp b/source/commands/renameseqscommand.cpp index 6e1593c0..ee9cbcee 100644 --- a/source/commands/renameseqscommand.cpp +++ b/source/commands/renameseqscommand.cpp @@ -681,19 +681,19 @@ int RenameSeqsCommand::processFile(map& readMap){ if (pos == string::npos) { m->mothurOut("[Opps]: I should never get here...\n"); } else { thisFileType = temp.substr(0, pos); - thisFile = temp.substr(pos); + thisFile = temp.substr(pos+1); } - + string thisOutputDir = outputDir; - string outMapFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFile)); + if (outputDir == "") { thisOutputDir += m->hasPath(thisFile); } + string outMapFile = thisOutputDir + m->getSimpleName(thisFile); map variables; - variables["[filename]"] = outMapFile; + variables["[filename]"] = outMapFile + "."; outMapFile = getOutputFileName("map", variables); outputNames.push_back(outMapFile); outputTypes["map"].push_back(outMapFile); ofstream outMap; m->openOutputFile(outMapFile, outMap); //prepare filenames and open files - if (outputDir == "") { thisOutputDir += m->hasPath(thisFile); } string outFile = thisOutputDir + m->getRootName(m->getSimpleName(thisFile)); variables["[filename]"] = outFile; variables["[extension]"] = m->getExtension(thisFile); @@ -714,6 +714,7 @@ int RenameSeqsCommand::processFile(map& readMap){ string name = ""; if (thisFileType == "fasta") { seq = new Sequence(in); name = seq->getName(); } else if (thisFileType == "qfile") { qual = new QualityScores(in); name = qual->getName(); } + else if (thisFileType == "group") { in >> name; m->gobble(in); in >> group; } m->gobble(in); //get new name @@ -729,8 +730,9 @@ int RenameSeqsCommand::processFile(map& readMap){ } - if (thisFileType == "fasta") { seq->setName(newName); seq->printSequence(out); delete seq; } - if (thisFileType == "qfile") { qual->setName(newName); qual->printQScores(out); delete qual; } + if (thisFileType == "fasta") { seq->setName(newName); seq->printSequence(out); delete seq; } + if (thisFileType == "qfile") { qual->setName(newName); qual->printQScores(out); delete qual; } + if (thisFileType == "group") { out << newName << '\t' << group << endl; } outMap << newName << '\t' << name << endl; } From 4e94c12018dc939019b756f083238d80f1f6923f Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 29 Sep 2015 16:08:41 -0400 Subject: [PATCH 054/135] Adds preliminary unit testing to rename.seqs and output num errors Issue #132 --- Mothur.xcodeproj/project.pbxproj | 6 ++++ TestMothur/testcommands/testrenameseqscommand.cpp | 37 ++++++++++++++++++++++ TestMothur/testcommands/testrenameseqscommand.h | 38 +++++++++++++++++++++++ source/commands/renameseqscommand.cpp | 8 ++--- source/commands/renameseqscommand.h | 4 +++ source/mothurout.cpp | 28 +++++++++++++++-- source/mothurout.h | 5 ++- 7 files changed, 119 insertions(+), 7 deletions(-) create mode 100644 TestMothur/testcommands/testrenameseqscommand.cpp create mode 100644 TestMothur/testcommands/testrenameseqscommand.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index ae30e79d..a7494b75 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -381,6 +381,7 @@ 487C5A871AB88B93002AF48A /* mimarksattributescommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */; }; 4893DE2918EEF28100C615DF /* (null) in Sources */ = {isa = PBXBuildFile; }; 48A85BAD18E1AF2000199B6F /* (null) in Sources */ = {isa = PBXBuildFile; }; + 48B662031BBB1B6600997EE4 /* testrenameseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */; }; 48C51DF01A76B888004ECDF1 /* fastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DEF1A76B888004ECDF1 /* fastqread.cpp */; }; 48C51DF31A793EFE004ECDF1 /* kmeralign.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */; }; 48C728651B66A77800D40830 /* testsequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728641B66A77800D40830 /* testsequence.cpp */; }; @@ -817,6 +818,8 @@ 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mimarksattributescommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/mimarksattributescommand.cpp; sourceTree = ""; }; 487C5A861AB88B93002AF48A /* mimarksattributescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mimarksattributescommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/mimarksattributescommand.h; sourceTree = ""; }; 48844B261AA74AF9006EF2B8 /* compare.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = compare.h; path = source/datastructures/compare.h; sourceTree = ""; }; + 48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testrenameseqscommand.cpp; path = testcommands/testrenameseqscommand.cpp; sourceTree = ""; }; + 48B662021BBB1B6600997EE4 /* testrenameseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testrenameseqscommand.h; path = testcommands/testrenameseqscommand.h; sourceTree = ""; }; 48C51DEE1A76B870004ECDF1 /* fastqread.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = fastqread.h; path = source/datastructures/fastqread.h; sourceTree = ""; }; 48C51DEF1A76B888004ECDF1 /* fastqread.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = fastqread.cpp; path = source/datastructures/fastqread.cpp; sourceTree = ""; }; 48C51DF11A793EFE004ECDF1 /* kmeralign.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = kmeralign.cpp; path = source/datastructures/kmeralign.cpp; sourceTree = ""; }; @@ -1733,6 +1736,8 @@ 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */, 48C728691B69598400D40830 /* testmergegroupscommand.h */, 48C728681B69598400D40830 /* testmergegroupscommand.cpp */, + 48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */, + 48B662021BBB1B6600997EE4 /* testrenameseqscommand.h */, 48C7286F1B6AB3B900D40830 /* testremovegroupscommand.cpp */, 48C728701B6AB3B900D40830 /* testremovegroupscommand.h */, 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */, @@ -2899,6 +2904,7 @@ 481FB6261AC1B7EA0076CFF3 /* alignmentcell.cpp in Sources */, 481FB5C21AC1B74F0076CFF3 /* getoturepcommand.cpp in Sources */, 481FB5D01AC1B75C0076CFF3 /* kruskalwalliscommand.cpp in Sources */, + 48B662031BBB1B6600997EE4 /* testrenameseqscommand.cpp in Sources */, 481FB5511AC1B6410076CFF3 /* npshannon.cpp in Sources */, 481FB6471AC1B7EA0076CFF3 /* sparsematrix.cpp in Sources */, 481FB5871AC1B6FF0076CFF3 /* decalc.cpp in Sources */, diff --git a/TestMothur/testcommands/testrenameseqscommand.cpp b/TestMothur/testcommands/testrenameseqscommand.cpp new file mode 100644 index 00000000..e843b775 --- /dev/null +++ b/TestMothur/testcommands/testrenameseqscommand.cpp @@ -0,0 +1,37 @@ +// +// testrenameseqscommand.cpp +// Mothur +// +// Created by Sarah Westcott on 9/29/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "testrenameseqscommand.h" + +TEST_CASE("Testing Rename.seqs Command") { + TestRenameSeqsCommand tRename; + + //setup environment + tRename.fastaFile = m->testDirectory + "final.fasta"; + tRename.nameFile = m->testDirectory + "final.names"; + tRename.groupfile = m->testDirectory + "final.groups"; + //tRename.countfile = m->testDirectory + "final.count_table"; + //tRename.qualfile = m->testDirectory + "final.qual"; + //tRename.contigsfile = m->testDirectory + "final.contigs"; + //tRename.fileFile = m->testDirectory + "final.file"; + //tRename.mapFile = m->testDirectory + "final.map"; + + + SECTION("Test execute") { + INFO("Using fasta, name and group files") // Only appears on a FAIL + tRename.fastaFile = m->testDirectory + "final.fasta"; + tRename.nameFile = m->testDirectory + "final.names"; + tRename.groupfile = m->testDirectory + "final.groups"; + CAPTURE(tRename.execute()); // Displays this variable on a FAIL + + CHECK(m->getNumErrors == 0); + } + + //add more tests... + +} diff --git a/TestMothur/testcommands/testrenameseqscommand.h b/TestMothur/testcommands/testrenameseqscommand.h new file mode 100644 index 00000000..84fb8e63 --- /dev/null +++ b/TestMothur/testcommands/testrenameseqscommand.h @@ -0,0 +1,38 @@ +// +// testrenameseqscommand.h +// Mothur +// +// Created by Sarah Westcott on 9/29/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testrenameseqscommand__ +#define __Mothur__testrenameseqscommand__ + +#include "renameseqscommand.h" + +class TestRenameSeqsCommand : public RenameSeqsCommand { + +public: + + //private functions + using RenameSeqsCommand::readQual; + using RenameSeqsCommand::readContigs; + using RenameSeqsCommand::readFasta; + using RenameSeqsCommand::processFile; + using RenameSeqsCommand::readMapFile; + using RenameSeqsCommand::readFiles; + + //private variables + using RenameSeqsCommand::fastaFile; + using RenameSeqsCommand::nameFile; + using RenameSeqsCommand::groupfile; + using RenameSeqsCommand::countfile; + using RenameSeqsCommand::qualfile; + using RenameSeqsCommand::contigsfile; + using RenameSeqsCommand::fileFile; + using RenameSeqsCommand::mapFile; + +}; + +#endif /* defined(__Mothur__testrenameseqscommand__) */ diff --git a/source/commands/renameseqscommand.cpp b/source/commands/renameseqscommand.cpp index ee9cbcee..30878679 100644 --- a/source/commands/renameseqscommand.cpp +++ b/source/commands/renameseqscommand.cpp @@ -255,14 +255,14 @@ RenameSeqsCommand::RenameSeqsCommand(string option) { if (contigsfile == "not open") { abort = true; } else if (contigsfile == "not found"){ contigsfile = ""; } - if ((countfile != "") && (nameFile != "")) { m->mothurOut("You must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; } + if ((countfile != "") && (nameFile != "")) { m->mothurOut("[ERROR]: You must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; } - if ((fileFile != "") && (fastaFile != "")) { m->mothurOut("You must enter ONLY ONE of the following: file or fasta."); m->mothurOutEndLine(); abort = true; } + if ((fileFile != "") && (fastaFile != "")) { m->mothurOut("[ERROR]: You must enter ONLY ONE of the following: file or fasta."); m->mothurOutEndLine(); abort = true; } - if ((countfile != "") && (groupfile != "")) { m->mothurOut("You must enter ONLY ONE of the following: count or group."); m->mothurOutEndLine(); abort = true; } + if ((countfile != "") && (groupfile != "")) { m->mothurOut("[ERROR]: You must enter ONLY ONE of the following: count or group."); m->mothurOutEndLine(); abort = true; } if ((fileFile != "") && ((nameFile != "") || (groupfile != "") || (qualfile != "") || (contigsfile != "") || (countfile != "") || (fastaFile != "")) ) { - m->mothurOut("The file option cannot be used with any other files except the map file."); m->mothurOutEndLine(); abort = true; + m->mothurOut("[ERROR]: The file option cannot be used with any other files except the map file."); m->mothurOutEndLine(); abort = true; } placement = validParameter.validFile(parameters, "placement", false); if (placement == "not found") { placement = "back"; } diff --git a/source/commands/renameseqscommand.h b/source/commands/renameseqscommand.h index f55fac9a..2e5071e4 100644 --- a/source/commands/renameseqscommand.h +++ b/source/commands/renameseqscommand.h @@ -13,6 +13,10 @@ class RenameSeqsCommand : public Command { +#ifdef UNIT_TEST + friend class TestRenameSeqsCommand; +#endif + public: RenameSeqsCommand(string); RenameSeqsCommand(); diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 9b485098..ccd5f0c7 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -301,6 +301,23 @@ void MothurOut::setOutputDir(string pathname) { /*********************************************************************************************/ void MothurOut::closeLog() { try { + if (numErrors != 0) { + out << "\n\n************************************************************\n"; + out << "************************************************************\n"; + out << "************************************************************\n"; + out << "Detected " + toString(numErrors) + " [ERROR] messages, please review.\n"; + out << "************************************************************\n"; + out << "************************************************************\n"; + out << "************************************************************\n"; + + logger() << "\n\n************************************************************\n"; + logger() << "************************************************************\n"; + logger() << "************************************************************\n"; + logger() << "Detected " + toString(numErrors) + " [ERROR] messages, please review.\n"; + logger() << "************************************************************\n"; + logger() << "************************************************************\n"; + logger() << "************************************************************\n"; + } out.close(); } catch(exception& e) { @@ -323,7 +340,8 @@ MothurOut::~MothurOut() { /*********************************************************************************************/ void MothurOut::mothurOut(string output) { try { - + if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (!quietMode) { out << output; logger() << output; @@ -344,7 +362,8 @@ void MothurOut::mothurOut(string output) { /*********************************************************************************************/ void MothurOut::mothurOutJustToScreen(string output) { try { - + if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (!quietMode) { logger() << output; }else { @@ -375,6 +394,8 @@ void MothurOut::mothurOutEndLine() { /*********************************************************************************************/ void MothurOut::mothurOut(string output, ofstream& outputFile) { try { + if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (!quietMode) { out << output; outputFile << output; @@ -411,6 +432,7 @@ void MothurOut::mothurOutEndLine(ofstream& outputFile) { /*********************************************************************************************/ void MothurOut::mothurOutJustToLog(string output) { try { + if (output.find("[ERROR]") != string::npos) { numErrors++; } if (!quietMode) { out << output; @@ -431,6 +453,8 @@ void MothurOut::mothurOutJustToLog(string output) { void MothurOut::errorOut(exception& e, string object, string function) { //double vm, rss; //mem_usage(vm, rss); + + numErrors++; string errorType = toString(e.what()); diff --git a/source/mothurout.h b/source/mothurout.h index 39d164b5..80d2dca0 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -69,7 +69,7 @@ class MothurOut { vector sharedBinLabelsInFile; vector currentSharedBinLabels; vector listBinLabelsInFile; - string saveNextLabel, argv, sharedHeaderMode, groupMode; + string saveNextLabel, argv, sharedHeaderMode, groupMode, testDirectory; bool printedSharedHeaders, printedListHeaders, commandInputsConvertError, changedSeqNames, modifyNames; //functions from mothur.h @@ -242,6 +242,7 @@ class MothurOut { string getSummaryFile() { return summaryfile; } string getFileFile() { return filefile; } string getProcessors() { return processors; } + int getNumErrors() { return numErrors; } void setListFile(string f) { listfile = getFullPathName(f); } void setTreeFile(string f) { treefile = getFullPathName(f); } @@ -316,6 +317,7 @@ class MothurOut { groupMode = "group"; changedSeqNames = false; modifyNames = true; + numErrors = 0; } ~MothurOut(); @@ -329,6 +331,7 @@ class MothurOut { vector Groups; vector namesOfGroups; ofstream out; + int numErrors; int mem_usage(double&, double&); From 7e11d31442f2ed48d6872cb7deea6d73440fdf5e Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 6 Oct 2015 11:43:38 -0400 Subject: [PATCH 055/135] Changes parameter option from number to otulabel Command: otu.hierarchy --- source/commands/otuhierarchycommand.cpp | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/source/commands/otuhierarchycommand.cpp b/source/commands/otuhierarchycommand.cpp index 65e250ba..a7406481 100644 --- a/source/commands/otuhierarchycommand.cpp +++ b/source/commands/otuhierarchycommand.cpp @@ -13,7 +13,7 @@ //********************************************************************************************************************** vector OtuHierarchyCommand::setParameters(){ try { - CommandParameter poutput("output", "Multiple", "name-number", "name", "", "", "","",false,false); parameters.push_back(poutput); + CommandParameter poutput("output", "Multiple", "name-otulabel", "name", "", "", "","",false,false); parameters.push_back(poutput); CommandParameter plist("list", "InputTypes", "", "", "none", "none", "none","otuheirarchy",false,true,true); parameters.push_back(plist); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); @@ -35,7 +35,7 @@ string OtuHierarchyCommand::getHelpString(){ string helpString = ""; helpString += "The otu.hierarchy command is used to see how otus relate at two distances. \n"; helpString += "The otu.hierarchy command parameters are list, label and output. list and label parameters are required. \n"; - helpString += "The output parameter allows you to output the names of the sequence in the OTUs or the OTU numbers. Options are name and number, default is name. \n"; + helpString += "The output parameter allows you to output the names of the sequence in the OTUs or the OTU labels. Options are name and otulabel, default is name. \n"; helpString += "The otu.hierarchy command should be in the following format: \n"; helpString += "otu.hierarchy(list=yourListFile, label=yourLabels).\n"; helpString += "Example otu.hierarchy(list=amazon.fn.list, label=0.01-0.03).\n"; @@ -145,7 +145,7 @@ OtuHierarchyCommand::OtuHierarchyCommand(string option) { output = validParameter.validFile(parameters, "output", false); if (output == "not found") { output = "name"; } - if ((output != "name") && (output != "number")) { m->mothurOut("output options are name and number. I will use name."); m->mothurOutEndLine(); output = "name"; } + if ((output != "name") && (output != "otulabel")) { m->mothurOut("output options are name and otulabel. I will use name."); m->mothurOutEndLine(); output = "name"; } } } From 6fa8a3449f3901e722b50ad74321937adfdf41f4 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 9 Oct 2015 13:37:25 -0400 Subject: [PATCH 056/135] Adds vsearch source to project Issue #169 --- Mothur.xcodeproj/project.pbxproj | 360 +++- source/chimera/bellerophon.cpp | 2 +- source/chimera/bellerophon.h | 4 +- source/chimera/ccode.cpp | 2 +- source/chimera/ccode.h | 4 +- source/chimera/chimeracheckrdp.cpp | 2 +- source/chimera/chimeracheckrdp.h | 4 +- source/chimera/chimerarealigner.h | 2 +- source/chimera/chimeraslayer.cpp | 6 +- source/chimera/chimeraslayer.h | 4 +- source/chimera/decalc.cpp | 2 +- source/chimera/maligner.h | 2 +- source/chimera/{chimera.cpp => mothurchimera.cpp} | 22 +- source/chimera/{chimera.h => mothurchimera.h} | 8 +- source/chimera/pintail.cpp | 2 +- source/chimera/pintail.h | 4 +- source/chimera/slayer.h | 2 +- source/commands/chimerabellerophoncommand.h | 4 +- source/commands/chimeraccodecommand.h | 4 +- source/commands/chimeracheckcommand.h | 4 +- source/commands/chimerapintailcommand.h | 4 +- source/commands/chimeraslayercommand.cpp | 2 +- source/commands/chimeraslayercommand.h | 6 +- source/mothur.h | 3 + source/svm/svm.cpp | 7 +- source/vsearch_src/abundance.cc | 181 ++ source/vsearch_src/abundance.h | 92 + source/vsearch_src/align.cc | 464 +++++ source/vsearch_src/align.h | 97 + source/vsearch_src/align_simd.cc | 1314 +++++++++++++ source/vsearch_src/align_simd.h | 104 + source/vsearch_src/allpairs.cc | 657 +++++++ source/vsearch_src/allpairs.h | 68 + source/vsearch_src/arch.cc | 104 + source/vsearch_src/arch.h | 64 + source/vsearch_src/bitmap.cc | 76 + source/vsearch_src/bitmap.h | 99 + source/vsearch_src/chimera.cc | 1570 ++++++++++++++++ source/vsearch_src/chimera.h | 61 + source/vsearch_src/cityhash/city.cc | 628 +++++++ source/vsearch_src/cityhash/city.h | 113 ++ source/vsearch_src/cityhash/citycrc.h | 43 + source/vsearch_src/cluster.cc | 1400 ++++++++++++++ source/vsearch_src/cluster.h | 63 + source/vsearch_src/cpu.cc | 130 ++ source/vsearch_src/cpu.h | 67 + source/vsearch_src/db.cc | 446 +++++ source/vsearch_src/db.h | 125 ++ source/vsearch_src/dbindex.cc | 217 +++ source/vsearch_src/dbindex.h | 101 + source/vsearch_src/derep.cc | 829 ++++++++ source/vsearch_src/derep.h | 62 + source/vsearch_src/fasta.cc | 545 ++++++ source/vsearch_src/fasta.h | 114 ++ source/vsearch_src/fastq.cc | 709 +++++++ source/vsearch_src/fastq.h | 115 ++ source/vsearch_src/fastqops.cc | 970 ++++++++++ source/vsearch_src/fastqops.h | 64 + source/vsearch_src/fastxdetect.cc | 224 +++ source/vsearch_src/fastxdetect.h | 61 + source/vsearch_src/linmemalign.cc | 708 +++++++ source/vsearch_src/linmemalign.h | 161 ++ source/vsearch_src/maps.cc | 402 ++++ source/vsearch_src/maps.h | 73 + source/vsearch_src/mask.cc | 245 +++ source/vsearch_src/mask.h | 77 + source/vsearch_src/md5.c | 295 +++ source/vsearch_src/md5.h | 53 + source/vsearch_src/minheap.cc | 261 +++ source/vsearch_src/minheap.h | 92 + source/vsearch_src/msa.cc | 436 +++++ source/vsearch_src/msa.h | 71 + source/vsearch_src/results.cc | 740 ++++++++ source/vsearch_src/results.h | 107 ++ source/vsearch_src/search.cc | 661 +++++++ source/vsearch_src/search.h | 61 + source/vsearch_src/searchcore.cc | 757 ++++++++ source/vsearch_src/searchcore.h | 165 ++ source/vsearch_src/sha1.c | 377 ++++ source/vsearch_src/sha1.h | 27 + source/vsearch_src/showalign.cc | 305 +++ source/vsearch_src/showalign.h | 79 + source/vsearch_src/shuffle.cc | 113 ++ source/vsearch_src/shuffle.h | 61 + source/vsearch_src/sortbylength.cc | 200 ++ source/vsearch_src/sortbylength.h | 61 + source/vsearch_src/sortbysize.cc | 203 ++ source/vsearch_src/sortbysize.h | 61 + source/vsearch_src/subsample.cc | 160 ++ source/vsearch_src/subsample.h | 61 + source/vsearch_src/unique.cc | 350 ++++ source/vsearch_src/unique.h | 78 + source/vsearch_src/userfields.cc | 165 ++ source/vsearch_src/userfields.h | 64 + source/vsearch_src/util.cc | 412 ++++ source/vsearch_src/util.h | 116 ++ source/vsearch_src/vsearch.cc | 2092 +++++++++++++++++++++ source/vsearch_src/vsearch.h | 326 ++++ source/vsearch_src/xstring.h | 143 ++ 99 files changed, 23195 insertions(+), 67 deletions(-) rename source/chimera/{chimera.cpp => mothurchimera.cpp} (96%) rename source/chimera/{chimera.h => mothurchimera.h} (93%) create mode 100644 source/vsearch_src/abundance.cc create mode 100644 source/vsearch_src/abundance.h create mode 100644 source/vsearch_src/align.cc create mode 100644 source/vsearch_src/align.h create mode 100644 source/vsearch_src/align_simd.cc create mode 100644 source/vsearch_src/align_simd.h create mode 100644 source/vsearch_src/allpairs.cc create mode 100644 source/vsearch_src/allpairs.h create mode 100644 source/vsearch_src/arch.cc create mode 100644 source/vsearch_src/arch.h create mode 100644 source/vsearch_src/bitmap.cc create mode 100644 source/vsearch_src/bitmap.h create mode 100644 source/vsearch_src/chimera.cc create mode 100644 source/vsearch_src/chimera.h create mode 100644 source/vsearch_src/cityhash/city.cc create mode 100644 source/vsearch_src/cityhash/city.h create mode 100644 source/vsearch_src/cityhash/citycrc.h create mode 100644 source/vsearch_src/cluster.cc create mode 100644 source/vsearch_src/cluster.h create mode 100644 source/vsearch_src/cpu.cc create mode 100644 source/vsearch_src/cpu.h create mode 100644 source/vsearch_src/db.cc create mode 100644 source/vsearch_src/db.h create mode 100644 source/vsearch_src/dbindex.cc create mode 100644 source/vsearch_src/dbindex.h create mode 100644 source/vsearch_src/derep.cc create mode 100644 source/vsearch_src/derep.h create mode 100644 source/vsearch_src/fasta.cc create mode 100644 source/vsearch_src/fasta.h create mode 100644 source/vsearch_src/fastq.cc create mode 100644 source/vsearch_src/fastq.h create mode 100644 source/vsearch_src/fastqops.cc create mode 100644 source/vsearch_src/fastqops.h create mode 100644 source/vsearch_src/fastxdetect.cc create mode 100644 source/vsearch_src/fastxdetect.h create mode 100644 source/vsearch_src/linmemalign.cc create mode 100644 source/vsearch_src/linmemalign.h create mode 100644 source/vsearch_src/maps.cc create mode 100644 source/vsearch_src/maps.h create mode 100644 source/vsearch_src/mask.cc create mode 100644 source/vsearch_src/mask.h create mode 100644 source/vsearch_src/md5.c create mode 100644 source/vsearch_src/md5.h create mode 100644 source/vsearch_src/minheap.cc create mode 100644 source/vsearch_src/minheap.h create mode 100644 source/vsearch_src/msa.cc create mode 100644 source/vsearch_src/msa.h create mode 100644 source/vsearch_src/results.cc create mode 100644 source/vsearch_src/results.h create mode 100644 source/vsearch_src/search.cc create mode 100644 source/vsearch_src/search.h create mode 100644 source/vsearch_src/searchcore.cc create mode 100644 source/vsearch_src/searchcore.h create mode 100644 source/vsearch_src/sha1.c create mode 100644 source/vsearch_src/sha1.h create mode 100644 source/vsearch_src/showalign.cc create mode 100644 source/vsearch_src/showalign.h create mode 100644 source/vsearch_src/shuffle.cc create mode 100644 source/vsearch_src/shuffle.h create mode 100644 source/vsearch_src/sortbylength.cc create mode 100644 source/vsearch_src/sortbylength.h create mode 100644 source/vsearch_src/sortbysize.cc create mode 100644 source/vsearch_src/sortbysize.h create mode 100644 source/vsearch_src/subsample.cc create mode 100644 source/vsearch_src/subsample.h create mode 100644 source/vsearch_src/unique.cc create mode 100644 source/vsearch_src/unique.h create mode 100644 source/vsearch_src/userfields.cc create mode 100644 source/vsearch_src/userfields.h create mode 100644 source/vsearch_src/util.cc create mode 100644 source/vsearch_src/util.h create mode 100644 source/vsearch_src/vsearch.cc create mode 100644 source/vsearch_src/vsearch.h create mode 100644 source/vsearch_src/xstring.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index a7494b75..75a06323 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -102,7 +102,7 @@ 481FB5811AC1B6EA0076CFF3 /* whittaker.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B87F12D37EC400DA6239 /* whittaker.cpp */; }; 481FB5821AC1B6FF0076CFF3 /* bellerophon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */; }; 481FB5831AC1B6FF0076CFF3 /* ccode.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67412D37EC400DA6239 /* ccode.cpp */; }; - 481FB5841AC1B6FF0076CFF3 /* chimera.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67812D37EC400DA6239 /* chimera.cpp */; }; + 481FB5841AC1B6FF0076CFF3 /* mothurchimera.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B67812D37EC400DA6239 /* mothurchimera.cpp */; }; 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children = ( + 48A52F4D1BC428DF00548F6C /* abundance.cc */, + 48A52F4E1BC428DF00548F6C /* abundance.h */, + 48A52F4F1BC428DF00548F6C /* align_simd.cc */, + 48A52F501BC428DF00548F6C /* align_simd.h */, + 48A52F511BC428DF00548F6C /* align.cc */, + 48A52F521BC428DF00548F6C /* align.h */, + 48A52F531BC428DF00548F6C /* allpairs.cc */, + 48A52F541BC428DF00548F6C /* allpairs.h */, + 48A52F551BC428DF00548F6C /* arch.cc */, + 48A52F561BC428DF00548F6C /* arch.h */, + 48A52F571BC428DF00548F6C /* bitmap.cc */, + 48A52F581BC428DF00548F6C /* bitmap.h */, + 48A52F591BC428DF00548F6C /* chimera.cc */, + 48A52F5A1BC428DF00548F6C /* chimera.h */, + 48A52F5B1BC428DF00548F6C /* cityhash */, + 48A52F601BC428DF00548F6C /* cluster.cc */, + 48A52F611BC428DF00548F6C /* cluster.h */, + 48A52F621BC428DF00548F6C /* cpu.cc */, + 48A52F631BC428DF00548F6C /* cpu.h */, + 48A52F641BC428DF00548F6C /* db.cc */, + 48A52F651BC428DF00548F6C /* db.h */, + 48A52F661BC428DF00548F6C /* dbindex.cc */, + 48A52F671BC428DF00548F6C /* dbindex.h */, + 48A52F681BC428DF00548F6C /* derep.cc */, + 48A52F691BC428DF00548F6C /* derep.h */, + 48A52F6A1BC428DF00548F6C /* fasta.cc */, + 48A52F6B1BC428DF00548F6C /* fasta.h */, + 48A52F6C1BC428DF00548F6C /* fastq.cc */, + 48A52F6D1BC428DF00548F6C /* fastq.h */, + 48A52F6E1BC428DF00548F6C /* fastqops.cc */, + 48A52F6F1BC428DF00548F6C /* fastqops.h */, + 48A52F701BC428DF00548F6C /* fastxdetect.cc */, + 48A52F711BC428DF00548F6C /* fastxdetect.h */, + 48A52F721BC428DF00548F6C /* linmemalign.cc */, + 48A52F731BC428DF00548F6C /* linmemalign.h */, + 48A52F751BC428DF00548F6C /* maps.cc */, + 48A52F761BC428DF00548F6C /* maps.h */, + 48A52F771BC428DF00548F6C /* mask.cc */, + 48A52F781BC428DF00548F6C /* mask.h */, + 48A52F791BC428DF00548F6C /* md5.c */, + 48A52F7A1BC428DF00548F6C /* md5.h */, + 48A52F7B1BC428DF00548F6C /* minheap.cc */, + 48A52F7C1BC428DF00548F6C /* minheap.h */, + 48A52F7D1BC428DF00548F6C /* msa.cc */, + 48A52F7E1BC428DF00548F6C /* msa.h */, + 48A52F7F1BC428DF00548F6C 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chimeracheckrdp.cpp */, A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */, A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */, @@ -2540,7 +2787,7 @@ 08FB7793FE84155DC02AAC07 /* Project object */ = { isa = PBXProject; attributes = { - LastUpgradeCheck = 0600; + LastUpgradeCheck = 0620; ORGANIZATIONNAME = "Schloss Lab"; TargetAttributes = { 481FB5181AC0A63E0076CFF3 = { @@ -2591,6 +2838,7 @@ 481FB5EF1AC1B77E0076CFF3 /* pcoacommand.cpp in Sources */, 481FB64E1AC1B7F40076CFF3 /* treenode.cpp in Sources */, 481FB5801AC1B6EA0076CFF3 /* weighted.cpp in Sources */, + 48A52FD51BC428DF00548F6C /* sortbylength.cc in Sources */, 481FB54F1AC1B63A0076CFF3 /* memeuclidean.cpp in Sources */, 481FB5611AC1B69B0076CFF3 /* sharedjsd.cpp in Sources */, 481FB5AF1AC1B7300076CFF3 /* createdatabasecommand.cpp in Sources */, @@ -2600,9 +2848,11 @@ 481FB5A01AC1B71B0076CFF3 /* classifysvmsharedcommand.cpp in Sources */, 481FB5741AC1B6EA0076CFF3 /* smithwilson.cpp in Sources */, 481FB6661AC1B8450076CFF3 /* progress.cpp in Sources */, + 48A52FAD1BC428DF00548F6C /* cpu.cc in Sources */, 481FB6511AC1B8100076CFF3 /* engine.cpp in Sources */, 481FB5381AC1B5E30076CFF3 /* clusterclassic.cpp in Sources */, 48C728721B6AB3B900D40830 /* testremovegroupscommand.cpp in Sources */, + 48A52FB11BC428DF00548F6C /* dbindex.cc in Sources */, 481FB5EC1AC1B77E0076CFF3 /* parselistscommand.cpp in Sources */, 481FB5B61AC1B74F0076CFF3 /* filtersharedcommand.cpp in Sources */, 481FB5F81AC1B77E0076CFF3 /* rarefactsharedcommand.cpp in Sources */, @@ -2611,6 +2861,7 @@ 481FB5A61AC1B7300076CFF3 /* clusterfragmentscommand.cpp in Sources */, 481FB5C01AC1B74F0076CFF3 /* getlineagecommand.cpp in Sources */, 481FB5F71AC1B77E0076CFF3 /* rarefactcommand.cpp in Sources */, + 48A52F9D1BC428DF00548F6C /* align_simd.cc in Sources */, 481FB61F1AC1B7AC0076CFF3 /* venncommand.cpp in Sources */, 481FB61A1AC1B7AC0076CFF3 /* treegroupscommand.cpp in Sources */, 481FB66B1AC1B8520076CFF3 /* decisiontree.cpp in Sources */, @@ -2627,13 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sharedutilities.cpp in Sources */, 481FB67C1AC1B88F0076CFF3 /* splitmatrix.cpp in Sources */, @@ -2654,6 +2910,7 @@ 481FB5C51AC1B74F0076CFF3 /* getrabundcommand.cpp in Sources */, 481FB56E1AC1B6C30076CFF3 /* sharedsorest.cpp in Sources */, 481FB6161AC1B7AC0076CFF3 /* summaryqualcommand.cpp in Sources */, + 48A52FC51BC428DF00548F6C /* minheap.cc in Sources */, 481FB56F1AC1B6C70076CFF3 /* sharedthetan.cpp in Sources */, 481FB5B21AC1B7300076CFF3 /* deuniqueseqscommand.cpp in Sources */, 481FB6331AC1B7EA0076CFF3 /* kmer.cpp in Sources */, @@ -2666,6 +2923,7 @@ 481FB57C1AC1B6EA0076CFF3 /* structkulczynski.cpp in Sources */, 481FB5BF1AC1B74F0076CFF3 /* getmimarkspackagecommand.cpp in Sources */, 481FB66C1AC1B8520076CFF3 /* randomforest.cpp in Sources */, + 48A52FCD1BC428DF00548F6C /* searchcore.cc in Sources */, 481FB67A1AC1B88F0076CFF3 /* readtree.cpp in Sources */, 481FB6061AC1B7970076CFF3 /* seqsummarycommand.cpp in Sources */, 481FB54A1AC1B6270076CFF3 /* jackknife.cpp in Sources */, @@ -2677,6 +2935,7 @@ 481FB6881AC1B8B80076CFF3 /* weightedlinkage.cpp in Sources */, 481FB61E1AC1B7AC0076CFF3 /* unifracweightedcommand.cpp in Sources */, 481FB5951AC1B71B0076CFF3 /* chimerabellerophoncommand.cpp in Sources */, + 48A52FBD1BC428DF00548F6C /* linmemalign.cc in Sources */, 481FB68D1AC1BA9E0076CFF3 /* classify.cpp in Sources */, 481FB65F1AC1B8450076CFF3 /* myseqdist.cpp in Sources */, 48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */, @@ -2695,14 +2954,17 @@ 481FB6641AC1B8450076CFF3 /* optionparser.cpp in Sources */, 481FB68B1AC1BA9E0076CFF3 /* aligntree.cpp in Sources */, 481FB5FB1AC1B77E0076CFF3 /* removelineagecommand.cpp in Sources */, + 48A52FB31BC428DF00548F6C /* derep.cc in Sources */, 481FB57A1AC1B6EA0076CFF3 /* structchord.cpp in Sources */, 481FB6651AC1B8450076CFF3 /* overlap.cpp in Sources */, 481FB6841AC1B8B80076CFF3 /* trimoligos.cpp in Sources */, 481FB6401AC1B7EA0076CFF3 /* sequencedb.cpp in Sources */, 481FB5C81AC1B74F0076CFF3 /* getseqscommand.cpp in Sources */, + 48A52FD91BC428DF00548F6C /* subsample.cc in Sources */, 481FB6011AC1B7970076CFF3 /* reversecommand.cpp in Sources */, 481FB55E1AC1B66D0076CFF3 /* sharedjackknife.cpp in Sources */, 481FB5D51AC1B75C0076CFF3 /* loadlogfilecommand.cpp in Sources */, + 48A52FBF1BC428DF00548F6C /* maps.cc in Sources */, 481FB64B1AC1B7F40076CFF3 /* suffixtree.cpp in Sources */, 481FB5F21AC1B77E0076CFF3 /* phylotypecommand.cpp in Sources */, 481FB6281AC1B7EA0076CFF3 /* blastalign.cpp in Sources */, @@ -2710,6 +2972,7 @@ 481FB6141AC1B7AC0076CFF3 /* subsamplecommand.cpp in Sources */, 481FB5481AC1B61F0076CFF3 /* hellinger.cpp in Sources */, 481FB5CA1AC1B74F0076CFF3 /* hclustercommand.cpp in Sources */, + 48A52FC11BC428DF00548F6C /* mask.cc in Sources */, 481FB5D41AC1B75C0076CFF3 /* listseqscommand.cpp in Sources */, 481FB6521AC1B8100076CFF3 /* fileoutput.cpp in Sources */, 481FB6851AC1B8B80076CFF3 /* validcalculator.cpp in Sources */, @@ -2723,9 +2986,11 @@ 481FB5921AC1B71B0076CFF3 /* anosimcommand.cpp in Sources */, 481FB6201AC1B7B30076CFF3 /* commandoptionparser.cpp in Sources */, 481FB5341AC1B5D60076CFF3 /* dmat.cpp in Sources */, + 48A52FB71BC428DF00548F6C /* fastq.cc in Sources */, 481FB6171AC1B7AC0076CFF3 /* summarysharedcommand.cpp in Sources */, 481FB68C1AC1BA9E0076CFF3 /* bayesian.cpp in Sources */, 481FB5F41AC1B77E0076CFF3 /* preclustercommand.cpp in Sources */, + 48A52FA11BC428DF00548F6C /* allpairs.cc in Sources */, 481FB5911AC1B71B0076CFF3 /* amovacommand.cpp in Sources */, 4829D9671B8387D0002EEED4 /* testbiominfocommand.cpp in Sources */, 481FB58A1AC1B6FF0076CFF3 /* myPerseus.cpp in Sources */, @@ -2744,12 +3009,14 @@ 481FB5C61AC1B74F0076CFF3 /* getrelabundcommand.cpp in Sources */, 481FB6571AC1B8100076CFF3 /* inputdata.cpp in Sources */, 481FB5451AC1B6170076CFF3 /* gower.cpp in Sources */, + 48A52FE11BC428DF00548F6C /* vsearch.cc in Sources */, 481FB5AC1AC1B7300076CFF3 /* corraxescommand.cpp in Sources */, 481FB5A11AC1B71B0076CFF3 /* classifytreecommand.cpp in Sources */, 48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */, 481FB62F1AC1B7EA0076CFF3 /* fastqread.cpp in Sources */, 481FB6901AC1BA9E0076CFF3 /* knn.cpp in Sources */, 481FB5941AC1B71B0076CFF3 /* catchallcommand.cpp in Sources */, + 48A52FB91BC428DF00548F6C /* fastqops.cc in Sources */, 481FB56C1AC1B6BE0076CFF3 /* sharedsorabund.cpp in Sources */, 481FB6411AC1B7EA0076CFF3 /* sequenceparser.cpp in Sources */, 481FB6381AC1B7EA0076CFF3 /* oligos.cpp in Sources */, @@ -2764,6 +3031,7 @@ 481FB66F1AC1B8520076CFF3 /* regularizedrandomforest.cpp in Sources */, 481FB5361AC1B5DC0076CFF3 /* getopt_long.cpp in Sources */, 481FB5A41AC1B7300076CFF3 /* clustercommand.cpp in Sources */, + 48A52FC71BC428DF00548F6C /* msa.cc in Sources */, 481FB5671AC1B6AD0076CFF3 /* sharedmorisitahorn.cpp in Sources */, 481FB5581AC1B6590076CFF3 /* shannonrange.cpp in Sources */, 481FB5601AC1B6790076CFF3 /* sharedjest.cpp in Sources */, @@ -2788,6 +3056,7 @@ 481FB5971AC1B71B0076CFF3 /* chimeracheckcommand.cpp in Sources */, 481FB5271AC0ADBA0076CFF3 /* mothurout.cpp in Sources */, 481FB54D1AC1B6300076CFF3 /* memchi2.cpp in Sources */, + 48A52FBB1BC428DF00548F6C /* fastxdetect.cc in Sources */, 481FB5E01AC1B77E0076CFF3 /* mergegroupscommand.cpp in Sources */, 481FB56B1AC1B6BB0076CFF3 /* sharedsobscollectsummary.cpp in Sources */, 481FB57F1AC1B6EA0076CFF3 /* uvest.cpp in Sources */, @@ -2799,6 +3068,7 @@ 481FB5E91AC1B77E0076CFF3 /* otuhierarchycommand.cpp in Sources */, 481FB5351AC1B5D90076CFF3 /* fasta.cpp in Sources */, 481FB6321AC1B7EA0076CFF3 /* groupmap.cpp in Sources */, + 48A52FD11BC428DF00548F6C /* showalign.cc in Sources */, 481FB5FF1AC1B7970076CFF3 /* removeseqscommand.cpp in Sources */, 481FB6771AC1B88F0076CFF3 /* readcluster.cpp in Sources */, 481FB5831AC1B6FF0076CFF3 /* ccode.cpp in Sources */, @@ -2848,12 +3118,15 @@ 481FB5EA1AC1B77E0076CFF3 /* pairwiseseqscommand.cpp in Sources */, 481FB63D1AC1B7EA0076CFF3 /* reportfile.cpp in Sources */, 481FB5F11AC1B77E0076CFF3 /* phylodiversitycommand.cpp in Sources */, + 48A52FB51BC428DF00548F6C /* fasta.cc in Sources */, 481FB5501AC1B63D0076CFF3 /* mempearson.cpp in Sources */, 481FB5B51AC1B7300076CFF3 /* filterseqscommand.cpp in Sources */, 481FB6621AC1B8450076CFF3 /* noalign.cpp in Sources */, + 48A52FDB1BC428DF00548F6C /* unique.cc in Sources */, 481FB5E31AC1B77E0076CFF3 /* mgclustercommand.cpp in Sources */, 481FB5491AC1B6220076CFF3 /* invsimpson.cpp in Sources */, 481FB5821AC1B6FF0076CFF3 /* bellerophon.cpp in Sources */, + 48A52FA91BC428DF00548F6C /* city.cc in Sources */, 481FB6731AC1B8820076CFF3 /* seqnoise.cpp in Sources */, 481FB5DC1AC1B75C0076CFF3 /* makelookupcommand.cpp in Sources */, 481FB53D1AC1B5F80076CFF3 /* bstick.cpp in Sources */, @@ -2863,7 +3136,10 @@ 481FB5F51AC1B77E0076CFF3 /* primerdesigncommand.cpp in Sources */, 481FB5B41AC1B7300076CFF3 /* distancecommand.cpp in Sources */, 481FB5391AC1B5E90076CFF3 /* ace.cpp in Sources */, + 48A52FAF1BC428DF00548F6C /* db.cc in Sources */, 481FB5751AC1B6EA0076CFF3 /* soergel.cpp in Sources */, + 48A52FDF1BC428DF00548F6C /* util.cc in Sources */, + 48A52FC31BC428DF00548F6C /* md5.c in Sources */, 481FB5DA1AC1B75C0076CFF3 /* makegroupcommand.cpp in Sources */, 481FB5691AC1B6B50076CFF3 /* sharedrjsd.cpp in Sources */, 481FB6801AC1B8960076CFF3 /* slibshuff.cpp in Sources */, @@ -2879,6 +3155,7 @@ 481FB60F1AC1B7AC0076CFF3 /* sortseqscommand.cpp in Sources */, 481FB67D1AC1B88F0076CFF3 /* treereader.cpp in Sources */, 481FB6131AC1B7AC0076CFF3 /* sracommand.cpp in Sources */, + 48A52FA51BC428DF00548F6C /* bitmap.cc in Sources */, 48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */, 481FB5541AC1B64C0076CFF3 /* prng.cpp in Sources */, 481FB6691AC1B8520076CFF3 /* abstractdecisiontree.cpp in Sources */, @@ -2887,6 +3164,7 @@ 481FB54B1AC1B62A0076CFF3 /* logsd.cpp in Sources */, 481FB55A1AC1B6600076CFF3 /* sharedace.cpp in Sources */, 481FB5BB1AC1B74F0076CFF3 /* getgroupcommand.cpp in Sources */, + 48A52FCF1BC428DF00548F6C /* sha1.c in Sources */, 481FB6361AC1B7EA0076CFF3 /* listvector.cpp in Sources */, 481FB5ED1AC1B77E0076CFF3 /* parsimonycommand.cpp in Sources */, 481FB55F1AC1B6750076CFF3 /* sharedjclass.cpp in Sources */, @@ -2922,12 +3200,15 @@ 481FB5FA1AC1B77E0076CFF3 /* removegroupscommand.cpp in Sources */, 481FB5371AC1B5E00076CFF3 /* cluster.cpp in Sources */, 481FB53B1AC1B5EF0076CFF3 /* boneh.cpp in Sources */, + 48A52F9B1BC428DF00548F6C /* abundance.cc in Sources */, 481FB6441AC1B7EA0076CFF3 /* sharedrabundfloatvector.cpp in Sources */, 481FB6071AC1B7970076CFF3 /* setcurrentcommand.cpp in Sources */, 481FB5321AC1B5D00076CFF3 /* cmdargs.cpp in Sources */, + 48A52FA31BC428DF00548F6C /* arch.cc in Sources */, 481FB6711AC1B8820076CFF3 /* rarefact.cpp in Sources */, - 481FB5841AC1B6FF0076CFF3 /* chimera.cpp in Sources */, + 481FB5841AC1B6FF0076CFF3 /* mothurchimera.cpp in Sources */, 481FB6121AC1B7AC0076CFF3 /* splitgroupscommand.cpp in Sources */, + 48A52FD71BC428DF00548F6C /* sortbysize.cc in Sources */, 481FB6921AC1BAA60076CFF3 /* taxonomyequalizer.cpp in Sources */, 481FB68A1AC1BA9E0076CFF3 /* alignnode.cpp in Sources */, 481FB58B1AC1B6FF0076CFF3 /* pintail.cpp in Sources */, @@ -2942,6 +3223,8 @@ 481FB6091AC1B7970076CFF3 /* setlogfilecommand.cpp in Sources */, 481FB5C91AC1B74F0076CFF3 /* getsharedotucommand.cpp in Sources */, 481FB5B11AC1B7300076CFF3 /* degapseqscommand.cpp in Sources */, + 48A52F9F1BC428DF00548F6C /* align.cc in Sources */, + 48A52FA71BC428DF00548F6C /* chimera.cc in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2949,6 +3232,7 @@ isa = PBXSourcesBuildPhase; buildActionMask = 2147483647; files = ( + 48A52FC01BC428DF00548F6C /* mask.cc in Sources */, A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */, A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */, A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */, @@ -2957,9 +3241,11 @@ A7E9B88612D37EC400DA6239 /* averagelinkage.cpp in Sources */, A7E9B88712D37EC400DA6239 /* bayesian.cpp in Sources */, A7E9B88812D37EC400DA6239 /* bellerophon.cpp in Sources */, + 48A52FAA1BC428DF00548F6C /* cluster.cc in Sources */, A7E9B88912D37EC400DA6239 /* bergerparker.cpp in Sources */, A7E9B88A12D37EC400DA6239 /* binsequencecommand.cpp in Sources */, A7E9B88B12D37EC400DA6239 /* blastalign.cpp in Sources */, + 48A52FE01BC428DF00548F6C /* vsearch.cc in Sources */, A7E9B88C12D37EC400DA6239 /* blastdb.cpp in Sources */, A7E9B88D12D37EC400DA6239 /* boneh.cpp in Sources */, A7E9B88E12D37EC400DA6239 /* bootstrap.cpp in Sources */, @@ -2969,7 +3255,7 @@ A7E9B89312D37EC400DA6239 /* catchallcommand.cpp in Sources */, A7E9B89412D37EC400DA6239 /* ccode.cpp in Sources */, A7E9B89512D37EC400DA6239 /* chao1.cpp in Sources */, - A7E9B89612D37EC400DA6239 /* chimera.cpp in Sources */, + A7E9B89612D37EC400DA6239 /* mothurchimera.cpp in Sources */, A7E9B89712D37EC400DA6239 /* chimerabellerophoncommand.cpp in Sources */, A7E9B89812D37EC400DA6239 /* chimeraccodecommand.cpp in Sources */, A7E9B89912D37EC400DA6239 /* chimeracheckcommand.cpp in Sources */, @@ -2979,7 +3265,9 @@ A7E9B89C12D37EC400DA6239 /* chimerarealigner.cpp in Sources */, A7E9B89E12D37EC400DA6239 /* chimeraslayer.cpp in Sources */, A7E9B89F12D37EC400DA6239 /* chimeraslayercommand.cpp in Sources */, + 48A52FB41BC428DF00548F6C /* fasta.cc in Sources */, A7E9B8A012D37EC400DA6239 /* chopseqscommand.cpp in Sources */, + 48A52FBA1BC428DF00548F6C /* fastxdetect.cc in Sources */, A7E9B8A112D37EC400DA6239 /* classify.cpp in Sources */, A7E9B8A212D37EC400DA6239 /* classifyotucommand.cpp in Sources */, A7E9B8A312D37EC400DA6239 /* classifyseqscommand.cpp in Sources */, @@ -3014,17 +3302,22 @@ A7E9B8C112D37EC400DA6239 /* efron.cpp in Sources */, A7E9B8C212D37EC400DA6239 /* engine.cpp in Sources */, A7E9B8C312D37EC400DA6239 /* fasta.cpp in Sources */, + 48A52F9A1BC428DF00548F6C /* abundance.cc in Sources */, A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */, A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */, A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */, + 48A52FBE1BC428DF00548F6C /* maps.cc in Sources */, A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */, + 48A52FCA1BC428DF00548F6C /* search.cc in Sources */, A7E9B8C912D37EC400DA6239 /* formatcolumn.cpp in Sources */, + 48A52FB21BC428DF00548F6C /* derep.cc in Sources */, A7E9B8CA12D37EC400DA6239 /* formatphylip.cpp in Sources */, A7E9B8CB12D37EC400DA6239 /* fullmatrix.cpp in Sources */, A7E9B8CC12D37EC400DA6239 /* geom.cpp in Sources */, A7E9B8CD12D37EC400DA6239 /* getgroupcommand.cpp in Sources */, A7E9B8CE12D37EC400DA6239 /* getgroupscommand.cpp in Sources */, A7E9B8CF12D37EC400DA6239 /* getlabelcommand.cpp in Sources */, + 48A52FDA1BC428DF00548F6C /* unique.cc in Sources */, A7E9B8D012D37EC400DA6239 /* getlineagecommand.cpp in Sources */, A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */, A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */, @@ -3034,11 +3327,13 @@ A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */, A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */, A7E9B8D812D37EC400DA6239 /* getseqscommand.cpp in Sources */, + 48A52F9C1BC428DF00548F6C /* align_simd.cc in Sources */, A7E9B8D912D37EC400DA6239 /* getsharedotucommand.cpp in Sources */, A7E9B8DB12D37EC400DA6239 /* goodscoverage.cpp in Sources */, A7E9B8DC12D37EC400DA6239 /* gotohoverlap.cpp in Sources */, A7E9B8DD12D37EC400DA6239 /* gower.cpp in Sources */, A7E9B8DE12D37EC400DA6239 /* groupmap.cpp in Sources */, + 48A52FD21BC428DF00548F6C /* shuffle.cc in Sources */, 4893DE2918EEF28100C615DF /* (null) in Sources */, A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */, A7E9B8E012D37EC400DA6239 /* hcluster.cpp in Sources */, @@ -3068,10 +3363,12 @@ A7E9B8F512D37EC400DA6239 /* makegroupcommand.cpp in Sources */, 48705AC719BE32C50075E977 /* sharedrjsd.cpp in Sources */, A7E9B8F612D37EC400DA6239 /* maligner.cpp in Sources */, + 48A52FBC1BC428DF00548F6C /* linmemalign.cc in Sources */, A7E9B8F712D37EC400DA6239 /* manhattan.cpp in Sources */, A7E9B8F812D37EC400DA6239 /* matrixoutputcommand.cpp in Sources */, A7E9B8F912D37EC400DA6239 /* memchi2.cpp in Sources */, A7E9B8FA12D37EC400DA6239 /* memchord.cpp in Sources */, + 48A52FC81BC428DF00548F6C /* results.cc in Sources */, A7E9B8FB12D37EC400DA6239 /* memeuclidean.cpp in Sources */, A7E9B8FC12D37EC400DA6239 /* mempearson.cpp in Sources */, A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */, @@ -3090,6 +3387,7 @@ A7E9B90B12D37EC400DA6239 /* odum.cpp in Sources */, A7E9B90C12D37EC400DA6239 /* optionparser.cpp in Sources */, A7E9B90D12D37EC400DA6239 /* ordervector.cpp in Sources */, + 48A52FA01BC428DF00548F6C /* allpairs.cc in Sources */, A7E9B90E12D37EC400DA6239 /* otuhierarchycommand.cpp in Sources */, A7E9B90F12D37EC400DA6239 /* overlap.cpp in Sources */, A7E9B91012D37EC400DA6239 /* pairwiseseqscommand.cpp in Sources */, @@ -3097,7 +3395,9 @@ A7E9B91212D37EC400DA6239 /* parselistscommand.cpp in Sources */, A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */, A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */, + 48A52FB01BC428DF00548F6C /* dbindex.cc in Sources */, A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */, + 48A52FAE1BC428DF00548F6C /* db.cc in Sources */, A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */, A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */, A7E9B91912D37EC400DA6239 /* phylotree.cpp in Sources */, @@ -3113,11 +3413,13 @@ A7E9B92212D37EC400DA6239 /* quitcommand.cpp in Sources */, A7E9B92312D37EC400DA6239 /* rabundvector.cpp in Sources */, A7E9B92412D37EC400DA6239 /* rarecalc.cpp in Sources */, + 48A52FD61BC428DF00548F6C /* sortbysize.cc in Sources */, A7E9B92512D37EC400DA6239 /* raredisplay.cpp in Sources */, A7E9B92612D37EC400DA6239 /* rarefact.cpp in Sources */, A7E9B92712D37EC400DA6239 /* rarefactcommand.cpp in Sources */, A7E9B92812D37EC400DA6239 /* rarefactsharedcommand.cpp in Sources */, A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */, + 48A52FD41BC428DF00548F6C /* sortbylength.cc in Sources */, A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */, A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */, A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */, @@ -3126,13 +3428,17 @@ A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */, A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */, A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */, + 48A52FDE1BC428DF00548F6C /* util.cc in Sources */, A7E9B93612D37EC400DA6239 /* reportfile.cpp in Sources */, A7E9B93712D37EC400DA6239 /* reversecommand.cpp in Sources */, + 48A52FD81BC428DF00548F6C /* subsample.cc in Sources */, A7E9B93812D37EC400DA6239 /* sabundvector.cpp in Sources */, A7E9B93912D37EC400DA6239 /* screenseqscommand.cpp in Sources */, A7E9B93A12D37EC400DA6239 /* secondarystructurecommand.cpp in Sources */, A7E9B93B12D37EC400DA6239 /* sensspeccommand.cpp in Sources */, + 48A52FC61BC428DF00548F6C /* msa.cc in Sources */, A7E9B93C12D37EC400DA6239 /* seqerrorcommand.cpp in Sources */, + 48A52FC21BC428DF00548F6C /* md5.c in Sources */, A7E9B93D12D37EC400DA6239 /* seqsummarycommand.cpp in Sources */, A7E9B93E12D37EC400DA6239 /* sequence.cpp in Sources */, A7E9B93F12D37EC400DA6239 /* sequencedb.cpp in Sources */, @@ -3151,6 +3457,7 @@ A7E9B94B12D37EC400DA6239 /* sharedjackknife.cpp in Sources */, A7E9B94C12D37EC400DA6239 /* sharedjclass.cpp in Sources */, A7E9B94D12D37EC400DA6239 /* sharedjest.cpp in Sources */, + 48A52FDC1BC428DF00548F6C /* userfields.cc in Sources */, A7E9B94E12D37EC400DA6239 /* sharedkstest.cpp in Sources */, A7E9B94F12D37EC400DA6239 /* sharedkulczynski.cpp in Sources */, A7E9B95012D37EC400DA6239 /* sharedkulczynskicody.cpp in Sources */, @@ -3171,12 +3478,15 @@ A7E9B95D12D37EC400DA6239 /* sharedsorclass.cpp in Sources */, A7E9B95E12D37EC400DA6239 /* sharedsorest.cpp in Sources */, A7E9B95F12D37EC400DA6239 /* sharedthetan.cpp in Sources */, + 48A52FA21BC428DF00548F6C /* arch.cc in Sources */, 48705AC819BE32C50075E977 /* abstractrandomforest.cpp in Sources */, A7E9B96012D37EC400DA6239 /* sharedthetayc.cpp in Sources */, A7E9B96112D37EC400DA6239 /* sharedutilities.cpp in Sources */, A7E9B96212D37EC400DA6239 /* shen.cpp in Sources */, A7E9B96312D37EC400DA6239 /* shhhercommand.cpp in Sources */, + 48A52FD01BC428DF00548F6C /* showalign.cc in Sources */, A7E9B96412D37EC400DA6239 /* simpson.cpp in Sources */, + 48A52FB61BC428DF00548F6C /* fastq.cc in Sources */, A7E9B96512D37EC400DA6239 /* simpsoneven.cpp in Sources */, A7E9B96612D37EC400DA6239 /* singlelinkage.cpp in Sources */, A7E9B96712D37EC400DA6239 /* slayer.cpp in Sources */, @@ -3194,8 +3504,11 @@ A7E9B97112D37EC400DA6239 /* splitmatrix.cpp in Sources */, A7E9B97212D37EC400DA6239 /* structchi2.cpp in Sources */, A7E9B97312D37EC400DA6239 /* structchord.cpp in Sources */, + 48A52FA81BC428DF00548F6C /* city.cc in Sources */, A7E9B97412D37EC400DA6239 /* structeuclidean.cpp in Sources */, A7E9B97512D37EC400DA6239 /* structkulczynski.cpp in Sources */, + 48A52FA61BC428DF00548F6C /* chimera.cc in Sources */, + 48A52FCC1BC428DF00548F6C /* searchcore.cc in Sources */, A7E9B97612D37EC400DA6239 /* structpearson.cpp in Sources */, A7E9B97712D37EC400DA6239 /* subsamplecommand.cpp in Sources */, A7E9B97812D37EC400DA6239 /* suffixdb.cpp in Sources */, @@ -3214,12 +3527,14 @@ A7E9B98412D37EC400DA6239 /* trimseqscommand.cpp in Sources */, A7E9B98512D37EC400DA6239 /* unifracunweightedcommand.cpp in Sources */, A7E9B98612D37EC400DA6239 /* unifracweightedcommand.cpp in Sources */, + 48A52FCE1BC428DF00548F6C /* sha1.c in Sources */, A7E9B98712D37EC400DA6239 /* unweighted.cpp in Sources */, A7E9B98812D37EC400DA6239 /* uvest.cpp in Sources */, A7E9B98912D37EC400DA6239 /* validcalculator.cpp in Sources */, A7E9B98A12D37EC400DA6239 /* validparameter.cpp in Sources */, A7E9B98B12D37EC400DA6239 /* venn.cpp in Sources */, A7E9B98C12D37EC400DA6239 /* venncommand.cpp in Sources */, + 48A52FC41BC428DF00548F6C /* minheap.cc in Sources */, A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */, A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */, A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */, @@ -3232,6 +3547,7 @@ A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */, 7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */, A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */, + 48A52F9E1BC428DF00548F6C /* align.cc in Sources */, A75790591301749D00A30DAB /* homovacommand.cpp in Sources */, 481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */, A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */, @@ -3279,11 +3595,13 @@ A74D59A4159A1E2000043046 /* counttable.cpp in Sources */, A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */, A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */, + 48A52FAC1BC428DF00548F6C /* cpu.cc in Sources */, A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */, A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */, A7386C29161A110800651424 /* decisiontree.cpp in Sources */, A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */, 835FE03D19F00640005AA754 /* classifysvmsharedcommand.cpp in Sources */, + 48A52FB81BC428DF00548F6C /* fastqops.cc in Sources */, A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */, A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */, A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */, @@ -3315,6 +3633,7 @@ A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */, A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */, A7B093C018579F0400843CD1 /* pam.cpp in Sources */, + 48A52FA41BC428DF00548F6C /* bitmap.cc in Sources */, A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; @@ -3326,7 +3645,6 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = YES; - ARCHS = "$(ARCHS_STANDARD_64_BIT)"; CLANG_CXX_LANGUAGE_STANDARD = "compiler-default"; CLANG_CXX_LIBRARY = "compiler-default"; CLANG_WARN_CXX0X_EXTENSIONS = YES; @@ -3344,9 +3662,13 @@ GCC_WARN_UNINITIALIZED_AUTOS = NO; GCC_WARN_UNUSED_FUNCTION = YES; "INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR; - "PRELINK_LIBS[arch=*]" = ""; + LIBRARY_SEARCH_PATHS = ( + "/Users/sarahwestcott/Desktop/boost_1_58_0/bin.v2/libs/iostreams/build/darwin-4.2.1/release/link-static/threading-multi", + /Users/sarahwestcott/Desktop/vsearch/src, + ); + PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = macosx10.9; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Debug; @@ -3355,10 +3677,9 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = YES; - ARCHS = "$(ARCHS_STANDARD_64_BIT)"; CLANG_CXX_LANGUAGE_STANDARD = "compiler-default"; CLANG_CXX_LIBRARY = "compiler-default"; - CLANG_WARN_CXX0X_EXTENSIONS = NO; + CLANG_WARN_CXX0X_EXTENSIONS = YES; CLANG_WARN_UNREACHABLE_CODE = YES; DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; DEPLOYMENT_LOCATION = YES; @@ -3368,9 +3689,14 @@ GCC_WARN_ABOUT_MISSING_PROTOTYPES = NO; GCC_WARN_UNINITIALIZED_AUTOS = NO; GCC_WARN_UNUSED_VALUE = YES; + LIBRARY_SEARCH_PATHS = ( + "/Users/sarahwestcott/Desktop/boost_1_58_0/bin.v2/libs/iostreams/build/darwin-4.2.1/release/link-static/threading-multi", + /Users/sarahwestcott/Desktop/vsearch/src, + ); ONLY_ACTIVE_ARCH = YES; + PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = macosx10.9; + SDKROOT = macosx; SKIP_INSTALL = NO; "VALID_ARCHS[sdk=*]" = "i386 x86_64"; }; @@ -3414,7 +3740,9 @@ ); OTHER_LDFLAGS = ( "-lreadline", + "-lncurses", "-lboost_iostreams", + "-lz", ); SDKROOT = macosx; SKIP_INSTALL = NO; @@ -3462,7 +3790,9 @@ ); OTHER_LDFLAGS = ( "-lreadline", + "-lncurses", "-lboost_iostreams", + "-lz", ); SDKROOT = macosx; SKIP_INSTALL = NO; diff --git a/source/chimera/bellerophon.cpp b/source/chimera/bellerophon.cpp index 290b9735..de315d0f 100644 --- a/source/chimera/bellerophon.cpp +++ b/source/chimera/bellerophon.cpp @@ -15,7 +15,7 @@ /***************************************************************************************************************/ -Bellerophon::Bellerophon(string name, bool filterSeqs, bool c, int win, int inc, int p, string o) : Chimera() { +Bellerophon::Bellerophon(string name, bool filterSeqs, bool c, int win, int inc, int p, string o) : MothurChimera() { try { fastafile = name; correction = c; diff --git a/source/chimera/bellerophon.h b/source/chimera/bellerophon.h index 74646211..1dd65901 100644 --- a/source/chimera/bellerophon.h +++ b/source/chimera/bellerophon.h @@ -11,7 +11,7 @@ */ -#include "chimera.h" +#include "mothurchimera.h" #include "sparsematrix.hpp" #include "sequence.hpp" #include "dist.h" @@ -21,7 +21,7 @@ typedef map SeqMap; //maps sequence to all distance for that seqeun /***********************************************************/ -class Bellerophon : public Chimera { +class Bellerophon : public MothurChimera { public: Bellerophon(string, bool, bool, int, int, int, string); //fastafile, filter, correction, window, increment, processors, outputDir); diff --git a/source/chimera/ccode.cpp b/source/chimera/ccode.cpp index 619717c3..9f4743d9 100644 --- a/source/chimera/ccode.cpp +++ b/source/chimera/ccode.cpp @@ -12,7 +12,7 @@ #include "eachgapdist.h" //*************************************************************************************************************** -Ccode::Ccode(string filename, string temp, bool f, string mask, int win, int numW, string o) : Chimera() { +Ccode::Ccode(string filename, string temp, bool f, string mask, int win, int numW, string o) : MothurChimera() { try { fastafile = filename; diff --git a/source/chimera/ccode.h b/source/chimera/ccode.h index 9e8faa01..fa3a0a1d 100644 --- a/source/chimera/ccode.h +++ b/source/chimera/ccode.h @@ -10,7 +10,7 @@ * */ -#include "chimera.h" +#include "mothurchimera.h" #include "dist.h" #include "decalc.h" @@ -21,7 +21,7 @@ /***********************************************************/ -class Ccode : public Chimera { +class Ccode : public MothurChimera { public: Ccode(string, string, bool, string, int, int, string); //fasta, template, filter, mask, window, numWanted, outputDir diff --git a/source/chimera/chimeracheckrdp.cpp b/source/chimera/chimeracheckrdp.cpp index e7fe02d1..9e91a96b 100644 --- a/source/chimera/chimeracheckrdp.cpp +++ b/source/chimera/chimeracheckrdp.cpp @@ -10,7 +10,7 @@ #include "chimeracheckrdp.h" //*************************************************************************************************************** -ChimeraCheckRDP::ChimeraCheckRDP(string filename, string temp, string n, bool s, int inc, int k, string o) : Chimera() { +ChimeraCheckRDP::ChimeraCheckRDP(string filename, string temp, string n, bool s, int inc, int k, string o) : MothurChimera() { try { fastafile = filename; templateFileName = temp; diff --git a/source/chimera/chimeracheckrdp.h b/source/chimera/chimeracheckrdp.h index 91d0f7d2..1a84b5e6 100644 --- a/source/chimera/chimeracheckrdp.h +++ b/source/chimera/chimeracheckrdp.h @@ -11,7 +11,7 @@ */ -#include "chimera.h" +#include "mothurchimera.h" #include "kmer.hpp" #include "kmerdb.hpp" #include "alignmentdb.h" @@ -22,7 +22,7 @@ /***********************************************************/ -class ChimeraCheckRDP : public Chimera { +class ChimeraCheckRDP : public MothurChimera { public: ChimeraCheckRDP(string, string, string, bool, int, int, string); //fasta, template, name, svg, increment, ksize, outputDir diff --git a/source/chimera/chimerarealigner.h b/source/chimera/chimerarealigner.h index 5809f429..606a83b4 100644 --- a/source/chimera/chimerarealigner.h +++ b/source/chimera/chimerarealigner.h @@ -10,7 +10,7 @@ * */ -#include "chimera.h" +#include "mothurchimera.h" #include "alignment.hpp" /***********************************************************/ diff --git a/source/chimera/chimeraslayer.cpp b/source/chimera/chimeraslayer.cpp index 531073c1..ea32ddde 100644 --- a/source/chimera/chimeraslayer.cpp +++ b/source/chimera/chimeraslayer.cpp @@ -14,7 +14,7 @@ //*************************************************************************************************************** ChimeraSlayer::ChimeraSlayer(string file, string temp, bool trim, string mode, int k, int ms, int mms, int win, float div, -int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid) : Chimera() { +int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid) : MothurChimera() { try { fastafile = file; templateFileName = temp; templateSeqs = readSeqs(temp); @@ -48,7 +48,7 @@ int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int num //*************************************************************************************************************** //template=self ChimeraSlayer::ChimeraSlayer(string file, string temp, bool trim, map& prior, string mode, int k, int ms, int mms, int win, float div, - int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid, bool bg) : Chimera() { + int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid, bool bg) : MothurChimera() { try { byGroup = bg; fastafile = file; templateSeqs = readSeqs(fastafile); @@ -98,7 +98,7 @@ ChimeraSlayer::ChimeraSlayer(string file, string temp, bool trim, map& prior, string mode, int k, int ms, int mms, int win, float div, - int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid) : Chimera() { + int minsim, int mincov, int minbs, int minsnp, int par, int it, int inc, int numw, bool r, string blas, int tid) : MothurChimera() { try { fastafile = file; templateSeqs = readSeqs(fastafile); templateFileName = temp; diff --git a/source/chimera/chimeraslayer.h b/source/chimera/chimeraslayer.h index 97c4a654..e7a4139a 100644 --- a/source/chimera/chimeraslayer.h +++ b/source/chimera/chimeraslayer.h @@ -11,7 +11,7 @@ */ -#include "chimera.h" +#include "mothurchimera.h" #include "maligner.h" #include "slayer.h" @@ -21,7 +21,7 @@ //This class was modeled after the chimeraSlayer written by the Broad Institute /***********************************************************************/ -class ChimeraSlayer : public Chimera { +class ChimeraSlayer : public MothurChimera { public: ChimeraSlayer(string, string, bool, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool, string, int); diff --git a/source/chimera/decalc.cpp b/source/chimera/decalc.cpp index 98545f8e..ab7fa0f2 100644 --- a/source/chimera/decalc.cpp +++ b/source/chimera/decalc.cpp @@ -8,7 +8,7 @@ */ #include "decalc.h" -#include "chimera.h" +#include "mothurchimera.h" #include "dist.h" #include "eachgapdist.h" #include "ignoregaps.h" diff --git a/source/chimera/maligner.h b/source/chimera/maligner.h index fc00e99f..474621d5 100644 --- a/source/chimera/maligner.h +++ b/source/chimera/maligner.h @@ -10,7 +10,7 @@ */ #include "decalc.h" -#include "chimera.h" +#include "mothurchimera.h" #include "database.hpp" /***********************************************************************/ diff --git a/source/chimera/chimera.cpp b/source/chimera/mothurchimera.cpp similarity index 96% rename from source/chimera/chimera.cpp rename to source/chimera/mothurchimera.cpp index 7563aa66..58c920a8 100644 --- a/source/chimera/chimera.cpp +++ b/source/chimera/mothurchimera.cpp @@ -7,12 +7,12 @@ * */ -#include "chimera.h" +#include "mothurchimera.h" #include "referencedb.h" //*************************************************************************************************************** //this is a vertical soft filter -string Chimera::createFilter(vector seqs, float t) { +string MothurChimera::createFilter(vector seqs, float t) { try { filterString = ""; int threshold = int (t * seqs.size()); @@ -62,12 +62,12 @@ string Chimera::createFilter(vector seqs, float t) { return filterString; } catch(exception& e) { - m->errorOut(e, "Chimera", "createFilter"); + m->errorOut(e, "MothurChimera", "createFilter"); exit(1); } } //*************************************************************************************************************** -map Chimera::runFilter(Sequence* seq) { +map MothurChimera::runFilter(Sequence* seq) { try { map maskMap; string seqAligned = seq->getAligned(); @@ -88,12 +88,12 @@ map Chimera::runFilter(Sequence* seq) { return maskMap; } catch(exception& e) { - m->errorOut(e, "Chimera", "runFilter"); + m->errorOut(e, "MothurChimera", "runFilter"); exit(1); } } //*************************************************************************************************************** -vector Chimera::readSeqs(string file) { +vector MothurChimera::readSeqs(string file) { try { vector container; @@ -151,12 +151,12 @@ vector Chimera::readSeqs(string file) { return container; } catch(exception& e) { - m->errorOut(e, "Chimera", "readSeqs"); + m->errorOut(e, "MothurChimera", "readSeqs"); exit(1); } } //*************************************************************************************************************** -void Chimera::setMask(string filename) { +void MothurChimera::setMask(string filename) { try { if (filename == "default") { @@ -182,12 +182,12 @@ void Chimera::setMask(string filename) { } } catch(exception& e) { - m->errorOut(e, "Chimera", "setMask"); + m->errorOut(e, "MothurChimera", "setMask"); exit(1); } } //*************************************************************************************************************** -Sequence* Chimera::getSequence(string name) { +Sequence* MothurChimera::getSequence(string name) { try{ Sequence* temp; @@ -207,7 +207,7 @@ Sequence* Chimera::getSequence(string name) { return temp; } catch(exception& e) { - m->errorOut(e, "Chimera", "getSequence"); + m->errorOut(e, "MothurChimera", "getSequence"); exit(1); } } diff --git a/source/chimera/chimera.h b/source/chimera/mothurchimera.h similarity index 93% rename from source/chimera/chimera.h rename to source/chimera/mothurchimera.h index 3656b43d..f405ac41 100644 --- a/source/chimera/chimera.h +++ b/source/chimera/mothurchimera.h @@ -2,7 +2,7 @@ #define CHIMERA_H /* - * chimera.h + * mothurchimera.h * Mothur * * Created by Sarah Westcott on 7/9/09. @@ -133,12 +133,12 @@ struct sim { }; /***********************************************************************/ -class Chimera { +class MothurChimera { public: - Chimera(){ m = MothurOut::getInstance(); length = 0; unaligned = false; byGroup = false; } - virtual ~Chimera(){ for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i]; } for (int i = 0; i < filteredTemplateSeqs.size(); i++) { delete filteredTemplateSeqs[i]; } }; + MothurChimera(){ m = MothurOut::getInstance(); length = 0; unaligned = false; byGroup = false; } + virtual ~MothurChimera(){ for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i]; } for (int i = 0; i < filteredTemplateSeqs.size(); i++) { delete filteredTemplateSeqs[i]; } }; virtual bool getUnaligned() { return unaligned; } virtual int getLength() { return length; } virtual vector readSeqs(string); diff --git a/source/chimera/pintail.cpp b/source/chimera/pintail.cpp index 87b2ba9f..42f14c3f 100644 --- a/source/chimera/pintail.cpp +++ b/source/chimera/pintail.cpp @@ -18,7 +18,7 @@ inline bool compareQuanMembers(quanMember left, quanMember right){ } //*************************************************************************************************************** -Pintail::Pintail(string filename, string temp, bool f, int p, string mask, string cons, string q, int win, int inc, string o) : Chimera() { +Pintail::Pintail(string filename, string temp, bool f, int p, string mask, string cons, string q, int win, int inc, string o) : MothurChimera() { try { fastafile = filename; diff --git a/source/chimera/pintail.h b/source/chimera/pintail.h index d70f93c0..93f098c8 100644 --- a/source/chimera/pintail.h +++ b/source/chimera/pintail.h @@ -10,7 +10,7 @@ * */ -#include "chimera.h" +#include "mothurchimera.h" #include "dist.h" #include "decalc.h" @@ -21,7 +21,7 @@ /***********************************************************/ -class Pintail : public Chimera { +class Pintail : public MothurChimera { public: Pintail(string, string, bool, int, string, string, string, int, int, string); //fastafile, templatefile, filter, processors, mask, conservation, quantile, window, increment, outputDir) diff --git a/source/chimera/slayer.h b/source/chimera/slayer.h index eeefc623..aa5a88e3 100644 --- a/source/chimera/slayer.h +++ b/source/chimera/slayer.h @@ -11,7 +11,7 @@ #include "sequence.hpp" -#include "chimera.h" +#include "mothurchimera.h" /***********************************************************************/ //This class was modeled after the chimeraSlayer written by the Broad Institute diff --git a/source/commands/chimerabellerophoncommand.h b/source/commands/chimerabellerophoncommand.h index 23e555d6..793d0512 100644 --- a/source/commands/chimerabellerophoncommand.h +++ b/source/commands/chimerabellerophoncommand.h @@ -12,7 +12,7 @@ #include "mothur.h" #include "command.hpp" -#include "chimera.h" +#include "mothurchimera.h" /***********************************************************/ @@ -41,7 +41,7 @@ class ChimeraBellerophonCommand : public Command { bool abort, filter, correction; string fastafile, outputDir; int processors, window, increment, numSeqs; - Chimera* chimera; + MothurChimera* chimera; vector outputNames; vector fastaFileNames; }; diff --git a/source/commands/chimeraccodecommand.h b/source/commands/chimeraccodecommand.h index 82855348..40c30a6f 100644 --- a/source/commands/chimeraccodecommand.h +++ b/source/commands/chimeraccodecommand.h @@ -12,7 +12,7 @@ #include "mothur.h" #include "command.hpp" -#include "chimera.h" +#include "mothurchimera.h" /***********************************************************/ @@ -46,7 +46,7 @@ class ChimeraCcodeCommand : public Command { bool abort, filter, save; string fastafile, templatefile, outputDir, maskfile; int processors, window, numwanted, numSeqs, templateSeqsLength; - Chimera* chimera; + MothurChimera* chimera; vector fastaFileNames; vector outputNames; }; diff --git a/source/commands/chimeracheckcommand.h b/source/commands/chimeracheckcommand.h index dd7b0aef..234fb149 100644 --- a/source/commands/chimeracheckcommand.h +++ b/source/commands/chimeracheckcommand.h @@ -12,7 +12,7 @@ #include "mothur.h" #include "command.hpp" -#include "chimera.h" +#include "mothurchimera.h" #include "chimeracheckrdp.h" @@ -47,7 +47,7 @@ class ChimeraCheckCommand : public Command { bool abort, svg, save; string fastafile, templatefile, namefile, outputDir; int processors, increment, ksize, numSeqs, templateSeqsLength; - Chimera* chimera; + MothurChimera* chimera; vector fastaFileNames; vector nameFileNames; vector outputNames; diff --git a/source/commands/chimerapintailcommand.h b/source/commands/chimerapintailcommand.h index 5a28ff08..3f43c5f8 100644 --- a/source/commands/chimerapintailcommand.h +++ b/source/commands/chimerapintailcommand.h @@ -12,7 +12,7 @@ #include "mothur.h" #include "command.hpp" -#include "chimera.h" +#include "mothurchimera.h" #include "referencedb.h" /***********************************************************/ @@ -48,7 +48,7 @@ class ChimeraPintailCommand : public Command { bool abort, filter, save; string fastafile, templatefile, consfile, quanfile, maskfile, outputDir, inputDir; int processors, window, increment, numSeqs, templateSeqsLength; - Chimera* chimera; + MothurChimera* chimera; vector outputNames; vector fastaFileNames; }; diff --git a/source/commands/chimeraslayercommand.cpp b/source/commands/chimeraslayercommand.cpp index ce341e0e..d26a16b0 100644 --- a/source/commands/chimeraslayercommand.cpp +++ b/source/commands/chimeraslayercommand.cpp @@ -1488,7 +1488,7 @@ int ChimeraSlayerCommand::driver(linePair filePos, string outputFName, string fi if (m->debug) { m->mothurOut("[DEBUG]: filename = " + filename + "\n"); } - Chimera* chimera; + MothurChimera* chimera; if (templatefile != "self") { //you want to run slayer with a reference template chimera = new ChimeraSlayer(filename, templatefile, trim, search, ksize, match, mismatch, window, divR, minSimilarity, minCoverage, minBS, minSNP, parents, iters, increment, numwanted, realign, blastlocation, rand()); }else { diff --git a/source/commands/chimeraslayercommand.h b/source/commands/chimeraslayercommand.h index fb41f364..b23b237c 100644 --- a/source/commands/chimeraslayercommand.h +++ b/source/commands/chimeraslayercommand.h @@ -12,7 +12,7 @@ #include "mothur.h" #include "command.hpp" -#include "chimera.h" +#include "mothurchimera.h" #include "chimeraslayer.h" #include "sequenceparser.h" #include "sequencecountparser.h" @@ -191,7 +191,7 @@ static DWORD WINAPI MySlayerThreadFunction(LPVOID lpParam){ - Chimera* chimera; + MothurChimera* chimera; if (pDataArray->templatefile != "self") { //you want to run slayer with a reference template chimera = new ChimeraSlayer(pDataArray->filename, pDataArray->templatefile, pDataArray->trim, pDataArray->search, pDataArray->ksize, pDataArray->match, pDataArray->mismatch, pDataArray->window, pDataArray->divR, pDataArray->minSimilarity, pDataArray->minCoverage, pDataArray->minBS, pDataArray->minSNP, pDataArray->parents, pDataArray->iters, pDataArray->increment, pDataArray->numwanted, pDataArray->realign, pDataArray->blastlocation, pDataArray->threadId); }else { @@ -379,7 +379,7 @@ static DWORD WINAPI MySlayerGroupThreadFunction(LPVOID lpParam){ ifstream inFASTA; pDataArray->m->openInputFile(thisFastaName, inFASTA); - Chimera* chimera; + MothurChimera* chimera; chimera = new ChimeraSlayer(thisFastaName, pDataArray->templatefile, pDataArray->trim, thisPriority, pDataArray->search, pDataArray->ksize, pDataArray->match, pDataArray->mismatch, pDataArray->window, pDataArray->divR, pDataArray->minSimilarity, pDataArray->minCoverage, pDataArray->minBS, pDataArray->minSNP, pDataArray->parents, pDataArray->iters, pDataArray->increment, pDataArray->numwanted, pDataArray->realign, pDataArray->blastlocation, pDataArray->threadId); chimera->printHeader(out); diff --git a/source/mothur.h b/source/mothur.h index e033f492..71a636b1 100644 --- a/source/mothur.h +++ b/source/mothur.h @@ -55,6 +55,8 @@ #include #include + + /***********************************************************************/ #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -64,6 +66,7 @@ #include #include #include + #ifdef USE_READLINE #include diff --git a/source/svm/svm.cpp b/source/svm/svm.cpp index b796ade6..f0f67b8f 100644 --- a/source/svm/svm.cpp +++ b/source/svm/svm.cpp @@ -325,7 +325,6 @@ void SvmPerformanceSummary::init(const SVM& svm, const LabeledObservationVector& double fp = 0; double fn = 0; double tn = 0; - double unknown = 0; for (int i = 0; i < actualLabels.size(); i++) { Label predictedLabel = predictedLabels.at(i); Label actualLabel = actualLabels.at(i).getLabel(); @@ -1067,9 +1066,9 @@ RankedFeatureList SvmRfe::getOrderedFeatureList(SvmDataset& svmDataset, OneVsOne m->mothurOut( "multiclass SVM accuracy: " + toString(s->getAccuracy()) ); m->mothurOutEndLine(); m->mothurOut( "two-class SVM performance" ); m->mothurOutEndLine(); - int labelFieldWidth = 2 + max_element(s->getLabels().begin(), s->getLabels().end())->size(); - int performanceFieldWidth = 10; - int performancePrecision = 3; + //int labelFieldWidth = 2 + max_element(s->getLabels().begin(), s->getLabels().end())->size(); + //int performanceFieldWidth = 10; + //int performancePrecision = 3; m->mothurOut("class 1\tclass 2\tprecision\trecall\f\accuracy"); m->mothurOutEndLine(); for ( SvmVector::const_iterator svm = s->getSvmList().begin(); svm != s->getSvmList().end(); svm++ ) { SvmPerformanceSummary sps = s->getSvmPerformanceSummary(**svm); diff --git a/source/vsearch_src/abundance.cc b/source/vsearch_src/abundance.cc new file mode 100644 index 00000000..8c96c951 --- /dev/null +++ b/source/vsearch_src/abundance.cc @@ -0,0 +1,181 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +abundance_t * abundance_init(void) +{ + abundance_t * a = (abundance_t *) xmalloc(sizeof(abundance_t)); + if (regcomp(&a->regex, "(^|;)size=([0-9]+)(;|$)", REG_EXTENDED)) + fatal("Compilation of regular expression for abundance annotation failed"); + return a; +} + +void abundance_exit(abundance_t * a) +{ + regfree(&a->regex); + free(a); +} + +long abundance_get(abundance_t * a, char * header) +{ + /* read size/abundance annotation */ + + long abundance = 1; + regmatch_t pmatch[4]; + + if (!regexec(&a->regex, header, 4, pmatch, 0)) + { + long number = atol(header + pmatch[2].rm_so); + if (number > 0) + abundance = number; + else + fatal("Invalid (zero) abundance annotation in fasta header"); + } + return abundance; +} + +void abundance_fprint_header_with_size(abundance_t * a, + FILE * fp, + char * header, + int header_length, + unsigned long size) +{ + /* remove any previous size annotation */ + /* regexp search for "(^|;)(\d+)(;|$)" */ + /* replace by ';' if not at either end */ + + regmatch_t pmatch[1]; + + if (!regexec(&a->regex, header, 1, pmatch, 0)) + { + int pat_start = pmatch[0].rm_so; + int pat_end = pmatch[0].rm_eo; + + fprintf(fp, + ">%.*s%s%.*s%ssize=%lu;\n", + pat_start, header, + (pat_start > 0 ? ";" : ""), + header_length - pat_end, header + pat_end, + (((pat_end < header_length) && + (header[header_length - 1] != ';')) ? ";" : ""), + size); + } + else + { + fprintf(fp, + ">%s%ssize=%lu;\n", + header, + (((header_length == 0) || + (header[header_length - 1] != ';')) ? ";" : ""), + size); + } +} + +void abundance_fprint_header_strip_size(abundance_t * a, + FILE * fp, + char * header, + int header_length) +{ + regmatch_t pmatch[1]; + + if (!regexec(&a->regex, header, 1, pmatch, 0)) + { + int pat_start = pmatch[0].rm_so; + int pat_end = pmatch[0].rm_eo; + + fprintf(fp, + ">%.*s%s%.*s\n", + pat_start, header, + ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", + header_length - pat_end, header + pat_end); + } + else + fprintf(fp, ">%s\n", header); +} + +char * abundance_strip_size(abundance_t * a, + char * header, + int header_length) +{ + int ret; + char * temp = 0; + regmatch_t pmatch[1]; + + + if (!regexec(&a->regex, header, 1, pmatch, 0)) + { + int pat_start = pmatch[0].rm_so; + int pat_end = pmatch[0].rm_eo; + + ret = asprintf(&temp, + "%.*s%s%.*s", + pat_start, header, + ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", + header_length - pat_end, header + pat_end); + } + else + ret = asprintf(&temp, "%s", header); + + if (ret == -1) + fatal("Out of memory"); + + return temp; +} diff --git a/source/vsearch_src/abundance.h b/source/vsearch_src/abundance.h new file mode 100644 index 00000000..71663d95 --- /dev/null +++ b/source/vsearch_src/abundance.h @@ -0,0 +1,92 @@ + + + +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + + +typedef struct abundance_s +{ + regex_t regex; +} abundance_t; + +abundance_t * abundance_init(void); + +void abundance_exit(abundance_t * a); + +long abundance_get(abundance_t * a, char * header); + +void abundance_fprint_header_with_size(abundance_t * a, + FILE * fp, + char * header, + int header_length, + unsigned long size); + +void abundance_fprint_header_strip_size(abundance_t * a, + FILE * fp, + char * header, + int header_length); + +char * abundance_strip_size(abundance_t * a, + char * header, + int header_length); + + + diff --git a/source/vsearch_src/align.cc b/source/vsearch_src/align.cc new file mode 100644 index 00000000..f4a7ca6d --- /dev/null +++ b/source/vsearch_src/align.cc @@ -0,0 +1,464 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +struct nwinfo_s +{ + long dir_alloc; + long hearray_alloc; + char * dir; + long * hearray; +}; + +static const char maskup = 1; +static const char maskleft = 2; +static const char maskextup = 4; +static const char maskextleft = 8; + +inline void pushop(char newop, char ** cigarendp, char * op, int * count) +{ + if (newop == *op) + (*count)++; + else + { + *--*cigarendp = *op; + if (*count > 1) + { + char buf[25]; + int len = sprintf(buf, "%d", *count); + *cigarendp -= len; + strncpy(*cigarendp, buf, (size_t)len); + } + *op = newop; + *count = 1; + } +} + +inline void finishop(char ** cigarendp, char * op, int * count) +{ + if ((op) && (count)) + { + *--*cigarendp = *op; + if (*count > 1) + { + char buf[25]; + int len = sprintf(buf, "%d", *count); + *cigarendp -= len; + strncpy(*cigarendp, buf, (size_t)len); + } + *op = 0; + *count = 0; + } +} + +/* + + Needleman-Wunsch aligner + + finds a global alignment with maximum score + positive score for matches; negative score mismatches + gap penalties are positive, but counts negatively + + alignment priority when backtracking (from lower right corner): + 1. left/insert/e (gap in query sequence (qseq)) + 2. up/delete/f (gap in database sequence (dseq)) + 3. align/diag/h (match/mismatch) + + qseq: the reference/query/upper/vertical/from sequence + dseq: the sample/database/lower/horisontal/to sequence + + default (interior) scores: + match: +2 + mismatch: -4 + gap open: 20 + gap extend: 2 + + input + + dseq: pointer to start of database sequence + dend: pointer after database sequence + qseq: pointer to start of query sequence + qend: pointer after database sequence + score_matrix: 16x16 matrix of longs with scores for aligning two symbols + gapopen: positive number indicating penalty for opening a gap of length zero + gapextend: positive number indicating penalty for extending a gap + + output + + nwscore: the global alignment score + nwdiff: number of non-identical nucleotides in one optimal global alignment + nwalignmentlength: the length of one optimal alignment + nwalignment: cigar string with one optimal alignment + +*/ + +struct nwinfo_s * nw_init() +{ + struct nwinfo_s * nw = (struct nwinfo_s *) xmalloc(sizeof(struct nwinfo_s)); + nw->dir = 0; + nw->dir_alloc = 0; + nw->hearray = 0; + nw->hearray_alloc = 0; + return nw; +} + +void nw_exit(struct nwinfo_s * nw) +{ + if (nw->dir) + free(nw->dir); + if (nw->hearray) + free(nw->hearray); + free(nw); +} + +inline int nt_identical(char a, char b) +{ + if (chrmap_4bit[(int)a] == chrmap_4bit[(int)b]) + return 1; + else + return 0; +} + +inline long getscore(long * score_matrix, char a, char b) +{ + return score_matrix[(chrmap_4bit[(int)a]<<4) + chrmap_4bit[(int)b]]; +} + +void nw_align(char * dseq, + char * dend, + char * qseq, + char * qend, + long * score_matrix, + long gapopen_q_left, + long gapopen_q_interior, + long gapopen_q_right, + long gapopen_t_left, + long gapopen_t_interior, + long gapopen_t_right, + long gapextend_q_left, + long gapextend_q_interior, + long gapextend_q_right, + long gapextend_t_left, + long gapextend_t_interior, + long gapextend_t_right, + long * nwscore, + long * nwdiff, + long * nwgaps, + long * nwindels, + long * nwalignmentlength, + char ** nwalignment, + long queryno, + long dbseqno, + struct nwinfo_s * nw) +{ + + long h, n, e, f, h_e, h_f; + long *hep; + + long qlen = qend - qseq; + long dlen = dend - dseq; + + if (qlen * dlen > nw->dir_alloc) + { + nw->dir_alloc = qlen * dlen; + nw->dir = (char *) xrealloc(nw->dir, (size_t)nw->dir_alloc); + } + + long need = 2 * qlen * (long) sizeof(long); + if (need > nw->hearray_alloc) + { + nw->hearray_alloc = need; + nw->hearray = (long *) xrealloc(nw->hearray, (size_t)nw->hearray_alloc); + } + + memset(nw->dir, 0, (size_t)(qlen*dlen)); + + long i, j; + + for(i=0; ihearray[2*i] = -gapopen_t_left - (i+1) * gapextend_t_left; + if (i < qlen-1) + nw->hearray[2*i+1] = + - gapopen_t_left - (i+1) * gapextend_t_left + - gapopen_q_interior - gapextend_q_interior; + else + nw->hearray[2*i+1] = + - gapopen_t_left - (i+1) * gapextend_t_left + - gapopen_q_right - gapextend_q_right; + } + + for(j=0; jhearray; + + if (j == 0) + h = 0; + else + h = - gapopen_q_left - j * gapextend_q_left; + + if (j < dlen-1) + f = - gapopen_q_left - (j+1) * gapextend_q_left + - gapopen_t_interior - gapextend_t_interior; + else + f = - gapopen_q_left - (j+1) * gapextend_q_left + - gapopen_t_right - gapextend_t_right; + + for(i=0; idir + qlen*j+i; + + n = *hep; + e = *(hep+1); + h += getscore(score_matrix, dseq[j], qseq[i]); + + if (f > h) + { + h = f; + *d |= maskup; + } + + if (e > h) + { + h = e; + *d |= maskleft; + } + + *hep = h; + + if (i < qlen-1) + { + h_e = h - gapopen_q_interior - gapextend_q_interior; + e -= gapextend_q_interior; + } + else + { + h_e = h - gapopen_q_right - gapextend_q_right; + e -= gapextend_q_right; + } + + if (j < dlen-1) + { + h_f = h - gapopen_t_interior - gapextend_t_interior; + f -= gapextend_t_interior; + } + else + { + h_f = h - gapopen_t_right - gapextend_t_right; + f -= gapextend_t_right; + } + + if (f > h_f) + *d |= maskextup; + else + f = h_f; + + if (e > h_e) + *d |= maskextleft; + else + e = h_e; + + *(hep+1) = e; + h = n; + hep += 2; + } + } + + long dist = nw->hearray[2*qlen-2]; + + /* backtrack: count differences and save alignment in cigar string */ + + long score = 0; + long alength = 0; + long matches = 0; + long gaps = 0; + long indels = 0; + + char * cigar = (char *) xmalloc((size_t)(qlen + dlen + 1)); + char * cigarend = cigar+qlen+dlen+1; + + char op = 0; + int count = 0; + *(--cigarend) = 0; + + i = qlen; + j = dlen; + + while ((i>0) && (j>0)) + { + long gapopen_q = (i < qlen) ? gapopen_q_interior : gapopen_q_right; + long gapextend_q = (i < qlen) ? gapextend_q_interior : gapextend_q_right; + long gapopen_t = (j < dlen) ? gapopen_t_interior : gapopen_t_right; + long gapextend_t = (j < dlen) ? gapextend_t_interior : gapextend_t_right; + + int d = nw->dir[qlen*(j-1)+(i-1)]; + + alength++; + + if ((op == 'I') && (d & maskextleft)) + { + score -= gapextend_q; + indels++; + j--; + pushop('I', &cigarend, &op, &count); + } + else if ((op == 'D') && (d & maskextup)) + { + score -= gapextend_t; + indels++; + i--; + pushop('D', &cigarend, &op, &count); + } + else if (d & maskleft) + { + score -= gapextend_q; + indels++; + if (op != 'I') + { + score -= gapopen_q; + gaps++; + } + j--; + pushop('I', &cigarend, &op, &count); + } + else if (d & maskup) + { + score -= gapextend_t; + indels++; + if (op != 'D') + { + score -= gapopen_t; + gaps++; + } + i--; + pushop('D', &cigarend, &op, &count); + } + else + { + score += getscore(score_matrix, dseq[j-1], qseq[i-1]); + if (nt_identical(dseq[j-1], qseq[i-1])) + matches++; + i--; + j--; + pushop('M', &cigarend, &op, &count); + } + } + + while(i>0) + { + alength++; + score -= gapextend_t_left; + indels++; + if (op != 'D') + { + score -= gapopen_t_left; + gaps++; + } + i--; + pushop('D', &cigarend, &op, &count); + } + + while(j>0) + { + alength++; + score -= gapextend_q_left; + indels++; + if (op != 'I') + { + score -= gapopen_q_left; + gaps++; + } + j--; + pushop('I', &cigarend, &op, &count); + } + + finishop(&cigarend, &op, &count); + + /* move and reallocate cigar */ + + long cigarlength = cigar+qlen+dlen-cigarend; + memmove(cigar, cigarend, (size_t)(cigarlength+1)); + cigar = (char*) xrealloc(cigar, (size_t)(cigarlength+1)); + + * nwscore = dist; + * nwdiff = alength - matches; + * nwalignmentlength = alength; + * nwalignment = cigar; + * nwgaps = gaps; + * nwindels = indels; + +#if 1 + if (score != dist) + { + fprintf(stderr, "WARNING: Error with query no %ld and db sequence no %ld:\n", queryno, dbseqno); + fprintf(stderr, "Initial and recomputed alignment score disagreement: %ld %ld\n", dist, score); + fprintf(stderr, "Alignment: %s\n", cigar); + + if (opt_log) + { + fprintf(fp_log, "WARNING: Error with query no %ld and db sequence no %ld:\n", queryno, dbseqno); + fprintf(fp_log, "Initial and recomputed alignment score disagreement: %ld %ld\n", dist, score); + fprintf(fp_log, "Alignment: %s\n", cigar); + fprintf(fp_log, "\n"); + } + } +#endif +} diff --git a/source/vsearch_src/align.h b/source/vsearch_src/align.h new file mode 100644 index 00000000..ce18f332 --- /dev/null +++ b/source/vsearch_src/align.h @@ -0,0 +1,97 @@ + + +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +struct nwinfo_s; + +struct nwinfo_s * nw_init(); + +void nw_exit(struct nwinfo_s * nw); + +void nw_align(char * dseq, + char * dend, + char * qseq, + char * qend, + long * score_matrix, + long gapopen_q_left, + long gapopen_q_interior, + long gapopen_q_right, + long gapopen_t_left, + long gapopen_t_interior, + long gapopen_t_right, + long gapextend_q_left, + long gapextend_q_interior, + long gapextend_q_right, + long gapextend_t_left, + long gapextend_t_interior, + long gapextend_t_right, + long * nwscore, + long * nwdiff, + long * nwgaps, + long * nwindels, + long * nwalignmentlength, + char ** nwalignment, + long queryno, + long dbseqno, + struct nwinfo_s * nw); + + + diff --git a/source/vsearch_src/align_simd.cc b/source/vsearch_src/align_simd.cc new file mode 100644 index 00000000..346c3b83 --- /dev/null +++ b/source/vsearch_src/align_simd.cc @@ -0,0 +1,1314 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* + Using 16-bit signed values, from -32768 to +32767. + match: positive + mismatch: negative + gap penalties: positive (open, extend, query/target, left/interior/right) + optimal global alignment (NW) + maximize score +*/ + +//#define DEBUG + +#define CHANNELS 8 +#define CDEPTH 4 + +/* + Due to memory usage, limit the product of the length of the sequences. + If the product of the query length and any target sequence length + is above the limit, the alignment will not be computed and a score + of SHRT_MAX will be returned as the score. + If an overflow occurs during alignment computation, a score of + SHRT_MAX will also be returned. + + The limit is set to 5 000 * 5 000 = 25 000 000. This will allocate up to + 200 MB per thread. It will align pairs of sequences less than 5000 nt long + using the SIMD implementation, larger alignments will be performed with + the linear memory aligner. +*/ + +#define MAXSEQLENPRODUCT 25000000 +//#define MAXSEQLENPRODUCT 160000 + +static long scorematrix[16][16]; + +struct s16info_s +{ + __m128i matrix[32]; + __m128i * hearray; + __m128i * dprofile; + __m128i ** qtable; + unsigned short * dir; + char * qseq; + unsigned long diralloc; + + char * cigar; + char * cigarend; + long cigaralloc; + int opcount; + char op; + + int qlen; + int maxdlen; + CELL penalty_gap_open_query_left; + CELL penalty_gap_open_target_left; + CELL penalty_gap_open_query_interior; + CELL penalty_gap_open_target_interior; + CELL penalty_gap_open_query_right; + CELL penalty_gap_open_target_right; + CELL penalty_gap_extension_query_left; + CELL penalty_gap_extension_target_left; + CELL penalty_gap_extension_query_interior; + CELL penalty_gap_extension_target_interior; + CELL penalty_gap_extension_query_right; + CELL penalty_gap_extension_target_right; +}; + +void _mm_print(__m128i x) +{ + unsigned short * y = (unsigned short*)&x; + for (int i=0; i<8; i++) + printf("%s%6d", (i>0?" ":""), y[7-i]); +} + +void _mm_print2(__m128i x) +{ + signed short * y = (signed short*)&x; + for (int i=0; i<8; i++) + printf("%s%2d", (i>0?" ":""), y[7-i]); +} + +void dprofile_dump16(CELL * dprofile) +{ + char * s = sym_nt_4bit; + printf("\ndprofile:\n"); + for(int i=0; i<16; i++) + { + printf("%c: ",s[i]); + for(int k=0; kH initially (must go up) (4th pri) + in DIR[2..3] if E>max(H,F) (must go left) (3rd pri) + in DIR[4..5] if new F>H (must extend up) (2nd pri) + in DIR[6..7] if new E>H (must extend left) (1st pri) + no bits set: go diagonally +*/ + +#define ALIGNCORE(H, N, F, V, PATH, QR_q, R_q, QR_t, R_t, H_MIN, H_MAX) \ + H = _mm_adds_epi16(H, V); \ + *(PATH+0) = _mm_movemask_epi8(_mm_cmpgt_epi16(F, H)); \ + H = _mm_max_epi16(H, F); \ + *(PATH+1) = _mm_movemask_epi8(_mm_cmpgt_epi16(E, H)); \ + H = _mm_max_epi16(H, E); \ + H_MIN = _mm_min_epi16(H_MIN, H); \ + H_MAX = _mm_max_epi16(H_MAX, H); \ + N = H; \ + HF = _mm_subs_epi16(H, QR_t); \ + F = _mm_subs_epi16(F, R_t); \ + *(PATH+2) = _mm_movemask_epi8(_mm_cmpgt_epi16(F, HF)); \ + F = _mm_max_epi16(F, HF); \ + HE = _mm_subs_epi16(H, QR_q); \ + E = _mm_subs_epi16(E, R_q); \ + *(PATH+3) = _mm_movemask_epi8(_mm_cmpgt_epi16(E, HE)); \ + E = _mm_max_epi16(E, HE); + + +void aligncolumns_first(__m128i * Sm, + __m128i * hep, + __m128i ** qp, + __m128i QR_q_i, + __m128i R_q_i, + __m128i QR_q_r, + __m128i R_q_r, + __m128i QR_t_0, + __m128i R_t_0, + __m128i QR_t_1, + __m128i R_t_1, + __m128i QR_t_2, + __m128i R_t_2, + __m128i QR_t_3, + __m128i R_t_3, + __m128i h0, + __m128i h1, + __m128i h2, + __m128i h3, + __m128i f0, + __m128i f1, + __m128i f2, + __m128i f3, + __m128i * _h_min, + __m128i * _h_max, + __m128i Mm, + __m128i M_QR_t_left, + __m128i M_R_t_left, + __m128i M_QR_q_interior, + __m128i M_QR_q_right, + long ql, + unsigned short * dir) +{ + __m128i h4, h5, h6, h7, h8, E, HE, HF; + __m128i * vp; + __m128i h_min = _mm_setzero_si128(); + __m128i h_max = _mm_setzero_si128(); + long i; + + f0 = _mm_subs_epi16(f0, QR_t_0); + f1 = _mm_subs_epi16(f1, QR_t_1); + f2 = _mm_subs_epi16(f2, QR_t_2); + f3 = _mm_subs_epi16(f3, QR_t_3); + + for(i=0; i < ql - 1; i++) + { + vp = qp[i+0]; + + h4 = hep[2*i+0]; + + E = hep[2*i+1]; + + /* + Initialize selected h and e values for next/this round. + First zero those cells where a new sequence starts + by using an unsigned saturated subtraction of a huge value to + set it to zero. + Then use signed subtraction to obtain the correct value. + */ + + h4 = _mm_subs_epu16(h4, Mm); + h4 = _mm_subs_epi16(h4, M_QR_t_left); + + E = _mm_subs_epu16(E, Mm); + E = _mm_subs_epi16(E, M_QR_t_left); + E = _mm_subs_epi16(E, M_QR_q_interior); + + M_QR_t_left = _mm_adds_epi16(M_QR_t_left, M_R_t_left); + + ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, + QR_q_i, R_q_i, QR_t_0, R_t_0, h_min, h_max); + ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, + QR_q_i, R_q_i, QR_t_1, R_t_1, h_min, h_max); + ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, + QR_q_i, R_q_i, QR_t_2, R_t_2, h_min, h_max); + ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, + QR_q_i, R_q_i, QR_t_3, R_t_3, h_min, h_max); + + hep[2*i+0] = h8; + hep[2*i+1] = E; + + h0 = h4; + h1 = h5; + h2 = h6; + h3 = h7; + } + + /* the final round - using query gap penalties for right end */ + + vp = qp[i+0]; + + E = hep[2*i+1]; + + E = _mm_subs_epu16(E, Mm); + E = _mm_subs_epi16(E, M_QR_t_left); + E = _mm_subs_epi16(E, M_QR_q_right); + + ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, + QR_q_r, R_q_r, QR_t_0, R_t_0, h_min, h_max); + ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, + QR_q_r, R_q_r, QR_t_1, R_t_1, h_min, h_max); + ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, + QR_q_r, R_q_r, QR_t_2, R_t_2, h_min, h_max); + ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, + QR_q_r, R_q_r, QR_t_3, R_t_3, h_min, h_max); + + hep[2*i+0] = h8; + hep[2*i+1] = E; + + Sm[0] = h5; + Sm[1] = h6; + Sm[2] = h7; + Sm[3] = h8; + + *_h_min = h_min; + *_h_max = h_max; +} + +void aligncolumns_rest(__m128i * Sm, + __m128i * hep, + __m128i ** qp, + __m128i QR_q_i, + __m128i R_q_i, + __m128i QR_q_r, + __m128i R_q_r, + __m128i QR_t_0, + __m128i R_t_0, + __m128i QR_t_1, + __m128i R_t_1, + __m128i QR_t_2, + __m128i R_t_2, + __m128i QR_t_3, + __m128i R_t_3, + __m128i h0, + __m128i h1, + __m128i h2, + __m128i h3, + __m128i f0, + __m128i f1, + __m128i f2, + __m128i f3, + __m128i * _h_min, + __m128i * _h_max, + long ql, + unsigned short * dir) +{ + __m128i h4, h5, h6, h7, h8, E, HE, HF; + __m128i * vp; + __m128i h_min = _mm_setzero_si128(); + __m128i h_max = _mm_setzero_si128(); + long i; + + f0 = _mm_subs_epi16(f0, QR_t_0); + f1 = _mm_subs_epi16(f1, QR_t_1); + f2 = _mm_subs_epi16(f2, QR_t_2); + f3 = _mm_subs_epi16(f3, QR_t_3); + + for(i=0; i < ql - 1; i++) + { + vp = qp[i+0]; + + h4 = hep[2*i+0]; + + E = hep[2*i+1]; + + ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, + QR_q_i, R_q_i, QR_t_0, R_t_0, h_min, h_max); + ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, + QR_q_i, R_q_i, QR_t_1, R_t_1, h_min, h_max); + ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, + QR_q_i, R_q_i, QR_t_2, R_t_2, h_min, h_max); + ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, + QR_q_i, R_q_i, QR_t_3, R_t_3, h_min, h_max); + + hep[2*i+0] = h8; + hep[2*i+1] = E; + + h0 = h4; + h1 = h5; + h2 = h6; + h3 = h7; + } + + /* the final round - using query gap penalties for right end */ + + vp = qp[i+0]; + + E = hep[2*i+1]; + + ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, + QR_q_r, R_q_r, QR_t_0, R_t_0, h_min, h_max); + ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, + QR_q_r, R_q_r, QR_t_1, R_t_1, h_min, h_max); + ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, + QR_q_r, R_q_r, QR_t_2, R_t_2, h_min, h_max); + ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, + QR_q_r, R_q_r, QR_t_3, R_t_3, h_min, h_max); + + hep[2*i+0] = h8; + hep[2*i+1] = E; + + Sm[0] = h5; + Sm[1] = h6; + Sm[2] = h7; + Sm[3] = h8; + + *_h_min = h_min; + *_h_max = h_max; +} + +inline void pushop(s16info_s * s, char newop) +{ + if (newop == s->op) + s->opcount++; + else + { + *--s->cigarend = s->op; + if (s->opcount > 1) + { + char buf[11]; + int len = sprintf(buf, "%d", s->opcount); + s->cigarend -= len; + strncpy(s->cigarend, buf, len); + } + s->op = newop; + s->opcount = 1; + } +} + +inline void finishop(s16info_s * s) +{ + if (s->op && s->opcount) + { + *--s->cigarend = s->op; + if (s->opcount > 1) + { + char buf[11]; + int len = sprintf(buf, "%d", s->opcount); + s->cigarend -= len; + strncpy(s->cigarend, buf, len); + } + s->op = 0; + s->opcount = 0; + } +} + +void backtrack16(s16info_s * s, + char * dseq, + unsigned long dlen, + unsigned long offset, + unsigned long channel, + unsigned short * paligned, + unsigned short * pmatches, + unsigned short * pmismatches, + unsigned short * pgaps) +{ + unsigned short * dirbuffer = s->dir; + unsigned long dirbuffersize = s->qlen * s->maxdlen * 4; + unsigned long qlen = s->qlen; + char * qseq = s->qseq; + + unsigned long maskup = 3UL << (2*channel+ 0); + unsigned long maskleft = 3UL << (2*channel+16); + unsigned long maskextup = 3UL << (2*channel+32); + unsigned long maskextleft = 3UL << (2*channel+48); + +#if 0 + + printf("Dumping backtracking array\n"); + + for(unsigned long i=0; iqlen*(j/4) + + 16*i + 4*(j&3)) % dirbuffersize)); + if (d & maskup) + { + if (d & maskleft) + printf("+"); + else + printf("^"); + } + else if (d & maskleft) + { + printf("<"); + } + else + { + printf("\\"); + } + } + printf("\n"); + } + + printf("Dumping gap extension array\n"); + + for(unsigned long i=0; iqlen*(j/4) + + 16*i + 4*(j&3)) % dirbuffersize)); + if (d & maskextup) + { + if (d & maskextleft) + printf("+"); + else + printf("^"); + } + else if (d & maskextleft) + { + printf("<"); + } + else + { + printf("\\"); + } + } + printf("\n"); + } + +#endif + + unsigned short aligned = 0; + unsigned short matches = 0; + unsigned short mismatches = 0; + unsigned short gaps = 0; + + long i = qlen - 1; + long j = dlen - 1; + + s->cigarend = s->cigar + s->qlen + s->maxdlen + 1; + s->op = 0; + s->opcount = 1; + + while ((i>=0) && (j>=0)) + { + aligned++; + + unsigned long d = *((unsigned long *) (dirbuffer + + (offset + 16*s->qlen*(j/4) + + 16*i + 4*(j&3)) % dirbuffersize)); + + if ((s->op == 'I') && (d & maskextleft)) + { + j--; + pushop(s, 'I'); + } + else if ((s->op == 'D') && (d & maskextup)) + { + i--; + pushop(s, 'D'); + } + else if (d & maskleft) + { + if (s->op != 'I') + gaps++; + j--; + pushop(s, 'I'); + } + else if (d & maskup) + { + if (s->op != 'D') + gaps++; + i--; + pushop(s, 'D'); + } + else + { + if (chrmap_4bit[(int)(qseq[i])] == chrmap_4bit[(int)(dseq[j])]) + matches++; + else + mismatches++; + i--; + j--; + pushop(s, 'M'); + } + } + + while(i>=0) + { + aligned++; + if (s->op != 'D') + gaps++; + i--; + pushop(s, 'D'); + } + + while(j>=0) + { + aligned++; + if (s->op != 'I') + gaps++; + j--; + pushop(s, 'I'); + } + + finishop(s); + + /* move cigar to beginning of allocated memory area */ + int cigarlen = s->cigar + s->qlen + s->maxdlen - s->cigarend; + memmove(s->cigar, s->cigarend, cigarlen + 1); + + * paligned = aligned; + * pmatches = matches; + * pmismatches = mismatches; + * pgaps = gaps; +} + +struct s16info_s * search16_init(CELL score_match, + CELL score_mismatch, + CELL penalty_gap_open_query_left, + CELL penalty_gap_open_target_left, + CELL penalty_gap_open_query_interior, + CELL penalty_gap_open_target_interior, + CELL penalty_gap_open_query_right, + CELL penalty_gap_open_target_right, + CELL penalty_gap_extension_query_left, + CELL penalty_gap_extension_target_left, + CELL penalty_gap_extension_query_interior, + CELL penalty_gap_extension_target_interior, + CELL penalty_gap_extension_query_right, + CELL penalty_gap_extension_target_right) +{ + /* prepare alloc of qtable, dprofile, hearray, dir */ + struct s16info_s * s = (struct s16info_s *) + xmalloc(sizeof(struct s16info_s)); + + s->dprofile = (__m128i *) xmalloc(2*4*8*16); + s->qlen = 0; + s->qseq = 0; + s->maxdlen = 0; + s->dir = 0; + s->diralloc = 0; + s->hearray = 0; + s->qtable = 0; + s->cigar = 0; + s->cigarend = 0; + s->cigaralloc = 0; + + for(int i=0; i<16; i++) + for(int j=0; j<16; j++) + { + CELL value; + if (i==j) + value = opt_match; + else if ((i==0) || (j==0) || (i>4) || (j>4)) + value = 0; + else + value = opt_mismatch; + ((CELL*)(&s->matrix))[16*i+j] = value; + } + + for(int i=0; i<16; i++) + for(int j=0; j<16; j++) + { + CELL value; + if ((i==0) || (j==0) || (i>4) || (j>4)) + value = 0; + else if (i==j) + value = opt_match; + else + value = opt_mismatch; + scorematrix[i][j] = value; + } + + s->penalty_gap_open_query_left = penalty_gap_open_query_left; + s->penalty_gap_open_query_interior = penalty_gap_open_query_interior; + s->penalty_gap_open_query_right = penalty_gap_open_query_right; + + s->penalty_gap_open_target_left = penalty_gap_open_target_left; + s->penalty_gap_open_target_interior = penalty_gap_open_target_interior; + s->penalty_gap_open_target_right = penalty_gap_open_target_right; + + s->penalty_gap_extension_query_left = penalty_gap_extension_query_left; + s->penalty_gap_extension_query_interior = penalty_gap_extension_query_interior; + s->penalty_gap_extension_query_right = penalty_gap_extension_query_right; + + s->penalty_gap_extension_target_left = penalty_gap_extension_target_left; + s->penalty_gap_extension_target_interior = penalty_gap_extension_target_interior; + s->penalty_gap_extension_target_right = penalty_gap_extension_target_right; + + return s; +} + +void search16_exit(s16info_s * s) +{ + /* free mem for dprofile, hearray, dir, qtable */ + if (s->dir) + free(s->dir); + if (s->hearray) + free(s->hearray); + if (s->dprofile) + free(s->dprofile); + if (s->qtable) + free(s->qtable); + if (s->cigar) + free(s->cigar); + free(s); +} + +void search16_qprep(s16info_s * s, char * qseq, int qlen) +{ + s->qlen = qlen; + s->qseq = qseq; + + if (s->hearray) + free(s->hearray); + s->hearray = (__m128i *) xmalloc(2 * s->qlen * sizeof(__m128i)); + memset(s->hearray, 0, 2 * s->qlen * sizeof(__m128i)); + + if (s->qtable) + free(s->qtable); + s->qtable = (__m128i **) xmalloc(s->qlen * sizeof(__m128i*)); + + for(int i = 0; i < qlen; i++) + s->qtable[i] = s->dprofile + 4 * chrmap_4bit[(int)(qseq[i])]; +} + +void search16(s16info_s * s, + unsigned int sequences, + unsigned int * seqnos, + CELL * pscores, + unsigned short * paligned, + unsigned short * pmatches, + unsigned short * pmismatches, + unsigned short * pgaps, + char ** pcigar) +{ + CELL ** q_start = (CELL**) s->qtable; + CELL * dprofile = (CELL*) s->dprofile; + CELL * hearray = (CELL*) s->hearray; + unsigned long qlen = s->qlen; + + /* find longest target sequence and reallocate direction buffer */ + unsigned long maxdlen = 0; + for(long i = 0; i < sequences; i++) + { + unsigned long dlen = db_getsequencelen(seqnos[i]); + /* skip the very long sequences */ + if ((long)(s->qlen) * dlen <= MAXSEQLENPRODUCT) + { + if (dlen > maxdlen) + maxdlen = dlen; + } + } + maxdlen = 4 * ((maxdlen + 3) / 4); + s->maxdlen = maxdlen; + unsigned long dirbuffersize = s->qlen * s->maxdlen * 4; + + if (dirbuffersize > s->diralloc) + { + s->diralloc = dirbuffersize; + if (s->dir) + free(s->dir); + s->dir = (unsigned short*) xmalloc(dirbuffersize * + sizeof(unsigned short)); + } + + unsigned short * dirbuffer = s->dir; + + if (s->qlen + s->maxdlen + 1 > s->cigaralloc) + { + s->cigaralloc = s->qlen + s->maxdlen + 1; + if (s->cigar) + free(s->cigar); + s->cigar = (char *) xmalloc(s->cigaralloc); + } + + __m128i T, M, T0; + + __m128i M_QR_target_left, M_R_target_left; + __m128i M_QR_query_interior; + __m128i M_QR_query_right; + + __m128i R_query_left; + __m128i QR_query_interior, R_query_interior; + __m128i QR_query_right, R_query_right; + __m128i QR_target_left, R_target_left; + __m128i QR_target_interior, R_target_interior; + __m128i QR_target_right, R_target_right; + __m128i QR_target[4], R_target[4]; + + __m128i *hep, **qp; + + BYTE * d_begin[CHANNELS]; + BYTE * d_end[CHANNELS]; + unsigned long d_offset[CHANNELS]; + BYTE * d_address[CHANNELS]; + unsigned long d_length[CHANNELS]; + long seq_id[CHANNELS]; + bool overflow[CHANNELS]; + + __m128i dseqalloc[CDEPTH]; + __m128i S[4]; + + BYTE * dseq = (BYTE*) & dseqalloc; + BYTE zero = 0; + + unsigned long next_id = 0; + unsigned long done = 0; + + T0 = _mm_set_epi16(0, 0, 0, 0, 0, 0, 0, 0xffff); + + R_query_left = _mm_set1_epi16(s->penalty_gap_extension_query_left); + + QR_query_interior = _mm_set1_epi16(s->penalty_gap_open_query_interior + + s->penalty_gap_extension_query_interior); + R_query_interior = _mm_set1_epi16(s->penalty_gap_extension_query_interior); + + QR_query_right = _mm_set1_epi16(s->penalty_gap_open_query_right + + s->penalty_gap_extension_query_right); + R_query_right = _mm_set1_epi16(s->penalty_gap_extension_query_right); + + QR_target_left = _mm_set1_epi16(s->penalty_gap_open_target_left + + s->penalty_gap_extension_target_left); + R_target_left = _mm_set1_epi16(s->penalty_gap_extension_target_left); + + QR_target_interior = _mm_set1_epi16(s->penalty_gap_open_target_interior + + s->penalty_gap_extension_target_interior); + R_target_interior = _mm_set1_epi16(s->penalty_gap_extension_target_interior); + + QR_target_right = _mm_set1_epi16(s->penalty_gap_open_target_right + + s->penalty_gap_extension_target_right); + R_target_right = _mm_set1_epi16(s->penalty_gap_extension_target_right); + + hep = (__m128i*) hearray; + qp = (__m128i**) q_start; + + for (int c=0; cpenalty_gap_open_query_left + + s->penalty_gap_extension_query_left); + gap_penalty_max = MAX(gap_penalty_max, + s->penalty_gap_open_query_interior + + s->penalty_gap_extension_query_interior); + gap_penalty_max = MAX(gap_penalty_max, + s->penalty_gap_open_query_right + + s->penalty_gap_extension_query_right); + gap_penalty_max = MAX(gap_penalty_max, + s->penalty_gap_open_target_left + + s->penalty_gap_extension_target_left); + gap_penalty_max = MAX(gap_penalty_max, + s->penalty_gap_open_target_interior + + s->penalty_gap_extension_target_interior); + gap_penalty_max = MAX(gap_penalty_max, + s->penalty_gap_open_target_right + + s->penalty_gap_extension_target_right); + + short score_min = SHRT_MIN + gap_penalty_max; + short score_max = SHRT_MAX; + + for(int i=0; i<4; i++) + { + S[i] = _mm_setzero_si128(); + dseqalloc[i] = _mm_setzero_si128(); + } + + __m128i H0 = _mm_setzero_si128(); + __m128i H1 = _mm_setzero_si128(); + __m128i H2 = _mm_setzero_si128(); + __m128i H3 = _mm_setzero_si128(); + + __m128i F0 = _mm_setzero_si128(); + __m128i F1 = _mm_setzero_si128(); + __m128i F2 = _mm_setzero_si128(); + __m128i F3 = _mm_setzero_si128(); + + int easy = 0; + + unsigned short * dir = dirbuffer; + + + while(1) + { + if (easy) + { + /* fill all channels with symbols from the database sequences */ + + for(int c=0; cmatrix, dseq); + + /* create vectors of gap penalties for target depending on whether + any of the database sequences ended in these four columns */ + + if (easy) + { + for(unsigned int j=0; j= ((d_length[c]+3) % 4))) + { + M = _mm_xor_si128(M, T); + } + T = _mm_slli_si128(T, 2); + } + QR_target[j] = _mm_adds_epi16(QR_target_interior, + _mm_and_si128(QR_diff, M)); + R_target[j] = _mm_adds_epi16(R_target_interior, + _mm_and_si128(R_diff, M)); + } + } + + __m128i h_min, h_max; + + aligncolumns_rest(S, hep, qp, + QR_query_interior, R_query_interior, + QR_query_right, R_query_right, + QR_target[0], R_target[0], + QR_target[1], R_target[1], + QR_target[2], R_target[2], + QR_target[3], R_target[3], + H0, H1, H2, H3, + F0, F1, F2, F3, + & h_min, & h_max, + qlen, dir); + + for(int c=0; c= score_max)) + overflow[c] = true; + } + } + } + else + { + /* One or more sequences ended in the previous block. + We have to switch over to a new sequence */ + + easy = 1; + + M = _mm_setzero_si128(); + T = T0; + for (int c=0; c= 0) + { + /* save score */ + + char * dbseq = (char*) d_address[c]; + long dbseqlen = d_length[c]; + long z = (dbseqlen+3) % 4; + long score = ((CELL*)S)[z*CHANNELS+c]; + + if (overflow[c]) + { + pscores[cand_id] = SHRT_MAX; + paligned[cand_id] = 0; + pmatches[cand_id] = 0; + pmismatches[cand_id] = 0; + pgaps[cand_id] = 0; + pcigar[cand_id] = xstrdup(""); + } + else + { + pscores[cand_id] = score; + backtrack16(s, dbseq, dbseqlen, d_offset[c], c, + paligned + cand_id, + pmatches + cand_id, + pmismatches + cand_id, + pgaps + cand_id); + pcigar[cand_id] = (char *) xmalloc(strlen(s->cigar)+1); + strcpy(pcigar[cand_id], s->cigar); + } + + done++; + } + + /* get next sequence of reasonable length */ + + long length = 0; + + while ((length == 0) && (next_id < sequences)) + { + cand_id = next_id++; + length = db_getsequencelen(seqnos[cand_id]); + if ((length==0) || (s->qlen * length > MAXSEQLENPRODUCT)) + { + pscores[cand_id] = SHRT_MAX; + paligned[cand_id] = 0; + pmatches[cand_id] = 0; + pmismatches[cand_id] = 0; + pgaps[cand_id] = 0; + pcigar[cand_id] = xstrdup(""); + length = 0; + done++; + } + } + + if (length > 0) + { + seq_id[c] = cand_id; + char * address = db_getsequence(seqnos[cand_id]); + d_address[c] = (BYTE*) address; + d_length[c] = length; + d_begin[c] = (unsigned char*) address; + d_end[c] = (unsigned char*) address + length; + d_offset[c] = dir - dirbuffer; + overflow[c] = false; + + ((CELL*)&H0)[c] = 0; + ((CELL*)&H1)[c] = - s->penalty_gap_open_query_left + - 1*s->penalty_gap_extension_query_left; + ((CELL*)&H2)[c] = - s->penalty_gap_open_query_left + - 2*s->penalty_gap_extension_query_left; + ((CELL*)&H3)[c] = - s->penalty_gap_open_query_left + - 3*s->penalty_gap_extension_query_left; + + ((CELL*)&F0)[c] = - s->penalty_gap_open_query_left + - 1*s->penalty_gap_extension_query_left; + ((CELL*)&F1)[c] = - s->penalty_gap_open_query_left + - 2*s->penalty_gap_extension_query_left; + ((CELL*)&F2)[c] = - s->penalty_gap_open_query_left + - 3*s->penalty_gap_extension_query_left; + ((CELL*)&F3)[c] = - s->penalty_gap_open_query_left + - 4*s->penalty_gap_extension_query_left; + + /* fill channel */ + + for(int j=0; jmatrix, dseq); + + /* create vectors of gap penalties for target depending on whether + any of the database sequences ended in these four columns */ + + if (easy) + { + for(unsigned int j=0; j= ((d_length[c]+3) % 4))) + { + M = _mm_xor_si128(M, T); + } + T = _mm_slli_si128(T, 2); + } + QR_target[j] = _mm_adds_epi16(QR_target_interior, + _mm_and_si128(QR_diff, M)); + R_target[j] = _mm_adds_epi16(R_target_interior, + _mm_and_si128(R_diff, M)); + } + } + + __m128i h_min, h_max; + + aligncolumns_first(S, hep, qp, + QR_query_interior, R_query_interior, + QR_query_right, R_query_right, + QR_target[0], R_target[0], + QR_target[1], R_target[1], + QR_target[2], R_target[2], + QR_target[3], R_target[3], + H0, H1, H2, H3, + F0, F1, F2, F3, + & h_min, & h_max, + M, + M_QR_target_left, M_R_target_left, + M_QR_query_interior, + M_QR_query_right, + qlen, dir); + + for(int c=0; c= score_max)) + overflow[c] = true; + } + } + } + + H0 = _mm_subs_epi16(H3, R_query_left); + H1 = _mm_subs_epi16(H0, R_query_left); + H2 = _mm_subs_epi16(H1, R_query_left); + H3 = _mm_subs_epi16(H2, R_query_left); + + F0 = _mm_subs_epi16(F3, R_query_left); + F1 = _mm_subs_epi16(F0, R_query_left); + F2 = _mm_subs_epi16(F1, R_query_left); + F3 = _mm_subs_epi16(F2, R_query_left); + + dir += 4 * 4 * s->qlen; + + if (dir >= dirbuffer + dirbuffersize) + dir -= dirbuffersize; + } +} diff --git a/source/vsearch_src/align_simd.h b/source/vsearch_src/align_simd.h new file mode 100644 index 00000000..a481af70 --- /dev/null +++ b/source/vsearch_src/align_simd.h @@ -0,0 +1,104 @@ + + + +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +typedef signed short CELL; +typedef unsigned short WORD; +typedef unsigned char BYTE; +struct s16info_s; + +struct s16info_s * +search16_init(CELL score_match, + CELL score_mismatch, + CELL penalty_gap_open_query_left, + CELL penalty_gap_open_target_left, + CELL penalty_gap_open_query_interior, + CELL penalty_gap_open_target_interior, + CELL penalty_gap_open_query_right, + CELL penalty_gap_open_target_right, + CELL penalty_gap_extension_query_left, + CELL penalty_gap_extension_target_left, + CELL penalty_gap_extension_query_interior, + CELL penalty_gap_extension_target_interior, + CELL penalty_gap_extension_query_right, + CELL penalty_gap_extension_target_right); + +void +search16_exit(s16info_s * s); + +void +search16_qprep(s16info_s * s, char * qseq, int qlen); + +void +search16(s16info_s * s, + unsigned int sequences, + unsigned int * seqnos, + CELL * pscores, + unsigned short * paligned, + unsigned short * pmatches, + unsigned short * pmismatches, + unsigned short * pgaps, + char * * pcigar); + + + + diff --git a/source/vsearch_src/allpairs.cc b/source/vsearch_src/allpairs.cc new file mode 100644 index 00000000..76a42a8f --- /dev/null +++ b/source/vsearch_src/allpairs.cc @@ -0,0 +1,657 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static pthread_t * pthread; + +/* global constants/data, no need for synchronization */ +static int seqcount; /* number of database sequences */ +static pthread_attr_t attr; + +/* global data protected by mutex */ +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; +static int qmatches; +static int queries; +static long progress = 0; +static FILE * fp_alnout = 0; +static FILE * fp_samout = 0; +static FILE * fp_userout = 0; +static FILE * fp_blast6out = 0; +static FILE * fp_uc = 0; +static FILE * fp_fastapairs = 0; +static FILE * fp_matched = 0; +static FILE * fp_notmatched = 0; + +inline int allpairs_hit_compare_typed(struct hit * x, struct hit * y) +{ + // high id, then low id + // early target, then late target + + if (x->id > y->id) + return -1; + else + if (x->id < y->id) + return +1; + else + if (x->target < y->target) + return -1; + else + if (x->target > y->target) + return +1; + else + return 0; +} + +int allpairs_hit_compare(const void * a, const void * b) +{ + return allpairs_hit_compare_typed((struct hit *) a, (struct hit *) b); +} + +void allpairs_output_results(int hit_count, + struct hit * hits, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ + /* show results */ + long toreport = MIN(opt_maxhits, hit_count); + + if (fp_alnout) + results_show_alnout(fp_alnout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_samout) + results_show_samout(fp_samout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (toreport) + { + double top_hit_id = hits[0].id; + + for(int t = 0; t < toreport; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + if (fp_fastapairs) + results_show_fastapairs_one(fp_fastapairs, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_uc) + if ((t==0) || opt_uc_allhits) + results_show_uc_one(fp_uc, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + } + else if (opt_output_no_hits) + { + if (fp_uc) + results_show_uc_one(fp_uc, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + + if (hit_count) + { + if (opt_matched) + { + fprintf(fp_matched, + ">%s\n", + query_head); + fprint_fasta_seq_only(fp_matched, + qsequence, + qseqlen, + opt_fasta_width); + } + } + else + { + if (opt_notmatched) + { + fprintf(fp_notmatched, + ">%s\n", + query_head); + fprint_fasta_seq_only(fp_notmatched, + qsequence, + qseqlen, + opt_fasta_width); + } + } +} + +void allpairs_thread_run(long t) +{ + struct searchinfo_s sia; + + struct searchinfo_s * si = & sia; + + si->strand = 0; + si->query_head_alloc = 0; + si->seq_alloc = 0; + si->kmersamplecount = 0; + si->kmers = 0; + si->m = 0; + si->finalized = 0; + + si->hits = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); + + struct nwinfo_s * nw = nw_init(); + + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + + LinearMemoryAligner lma; + + long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); + + lma.set_parameters(scorematrix, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + /* allocate memory for alignment results */ + unsigned int maxhits = seqcount; + unsigned int * pseqnos = + (unsigned int *) xmalloc(sizeof(unsigned int) * maxhits); + CELL * pscores = + (CELL*) xmalloc(sizeof(CELL) * maxhits); + unsigned short * paligned = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + unsigned short * pmatches = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + unsigned short * pmismatches = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + unsigned short * pgaps = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + char** pcigar = (char**) xmalloc(sizeof(char*) * maxhits); + + struct hit * finalhits + = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); + + bool cont = 1; + + while (cont) + { + pthread_mutex_lock(&mutex_input); + + int query_no = queries; + + if (query_no < seqcount) + { + queries++; + + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); + + /* init search info */ + si->query_no = query_no; + si->qsize = db_getabundance(query_no); + si->query_head_len = db_getheaderlen(query_no); + si->query_head = db_getheader(query_no); + si->qseqlen = db_getsequencelen(query_no); + si->qsequence = db_getsequence(query_no); + si->rejects = 0; + si->accepts = 0; + si->hit_count = 0; + + for(int target = si->query_no + 1; + target < seqcount; target++) + { + if (opt_acceptall || search_acceptable_unaligned(si, target)) + pseqnos[si->hit_count++] = target; + } + + if (si->hit_count) + { + /* perform alignments */ + + search16_qprep(si->s, si->qsequence, si->qseqlen); + + search16(si->s, + si->hit_count, + pseqnos, + pscores, + paligned, + pmatches, + pmismatches, + pgaps, + pcigar); + + /* convert to hit structure */ + for (int h = 0; h < si->hit_count; h++) + { + struct hit * hit = si->hits + h; + + unsigned int target = pseqnos[h]; + long nwscore = pscores[h]; + + char * nwcigar; + long nwalignmentlength; + long nwmatches; + long nwmismatches; + long nwgaps; + + if (nwscore == SHRT_MAX) + { + /* In case the SIMD aligner cannot align, + perform a new alignment with the + linear memory aligner */ + + char * tseq = db_getsequence(target); + long tseqlen = db_getsequencelen(target); + + if (pcigar[h]) + free(pcigar[h]); + + nwcigar = xstrdup(lma.align(si->qsequence, + tseq, + si->qseqlen, + tseqlen)); + lma.alignstats(nwcigar, + si->qsequence, + tseq, + & nwscore, + & nwalignmentlength, + & nwmatches, + & nwmismatches, + & nwgaps); + } + else + { + nwcigar = pcigar[h]; + nwalignmentlength = paligned[h]; + nwmatches = pmatches[h]; + nwmismatches = pmismatches[h]; + nwgaps = pgaps[h]; + } + + hit->target = target; + hit->strand = 0; + hit->count = 0; + + hit->accepted = 0; + hit->rejected = 0; + hit->aligned = 1; + hit->weak = 0; + + hit->nwscore = nwscore; + hit->nwdiff = nwalignmentlength - nwmatches; + hit->nwgaps = nwgaps; + hit->nwindels = nwalignmentlength - nwmatches - nwmismatches; + hit->nwalignmentlength = nwalignmentlength; + hit->nwid = 100.0 * (nwalignmentlength - hit->nwdiff) / + nwalignmentlength; + hit->nwalignment = nwcigar; + hit->matches = nwalignmentlength - hit->nwdiff; + hit->mismatches = hit->nwdiff - hit->nwindels; + + long dseqlen = db_getsequencelen(target); + hit->shortest = MIN(si->qseqlen, dseqlen); + hit->longest = MAX(si->qseqlen, dseqlen); + + /* trim alignment, compute numbers excluding terminal gaps */ + align_trim(hit); + + /* test accept/reject criteria after alignment */ + if (opt_acceptall || search_acceptable_aligned(si, hit)) + finalhits[si->accepts++] = *hit; + } + + /* sort hits */ + qsort(finalhits, si->accepts, + sizeof(struct hit), allpairs_hit_compare); + } + + /* lock mutex for update of global data and output */ + pthread_mutex_lock(&mutex_output); + + /* output results */ + allpairs_output_results(si->accepts, + finalhits, + si->query_head, + si->qseqlen, + si->qsequence, + 0); + + /* update stats */ + if (si->accepts) + qmatches++; + + /* show progress */ + progress += seqcount - query_no - 1; + progress_update(progress); + + pthread_mutex_unlock(&mutex_output); + + /* free memory for alignment strings */ + for(int i=0; i < si->hit_count; i++) + if (si->hits[i].aligned) + free(si->hits[i].nwalignment); + } + else + { + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); + + cont = 0; + } + } + + free(finalhits); + + free(pcigar); + free(pgaps); + free(pmismatches); + free(pmatches); + free(paligned); + free(pscores); + free(pseqnos); + + search16_exit(si->s); + + nw_exit(nw); + + free(scorematrix); + + free(si->hits); +} + +void * allpairs_thread_worker(void * vp) +{ + long t = (long) vp; + allpairs_thread_run(t); + return 0; +} + +void allpairs_thread_worker_run() +{ + /* initialize threads, start them, join them and return */ + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* init and create worker threads, put them into stand-by mode */ + for(int t=0; t, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void allpairs_global(char * cmdline, char * progheader); + + + + diff --git a/source/vsearch_src/arch.cc b/source/vsearch_src/arch.cc new file mode 100644 index 00000000..4a4946d0 --- /dev/null +++ b/source/vsearch_src/arch.cc @@ -0,0 +1,104 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +unsigned long arch_get_memused() +{ + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + +#if defined __APPLE__ + /* Mac: ru_maxrss gives the size in bytes */ + return r_usage.ru_maxrss; +#else + /* Linux: ru_maxrss gives the size in kilobytes */ + return r_usage.ru_maxrss * 1024; +#endif +} + +unsigned long arch_get_memtotal() +{ +#if defined(_SC_PHYS_PAGES) && defined(_SC_PAGESIZE) + + long phys_pages = sysconf(_SC_PHYS_PAGES); + long pagesize = sysconf(_SC_PAGESIZE); + if ((phys_pages == -1) || (pagesize == -1)) + fatal("Cannot determine amount of RAM"); + return pagesize * phys_pages; + +#elif defined(__APPLE__) + + int mib [] = { CTL_HW, HW_MEMSIZE }; + int64_t ram = 0; + size_t length = sizeof(ram); + if(sysctl(mib, 2, &ram, &length, NULL, 0) == -1) + fatal("Cannot determine amount of RAM"); + return ram; + +#else + + struct sysinfo si; + if (sysinfo(&si)) + fatal("Cannot determine amount of RAM"); + return si.totalram * si.mem_unit; + +#endif +} diff --git a/source/vsearch_src/arch.h b/source/vsearch_src/arch.h new file mode 100644 index 00000000..dee7cc97 --- /dev/null +++ b/source/vsearch_src/arch.h @@ -0,0 +1,64 @@ + +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +unsigned long arch_get_memused(); +unsigned long arch_get_memtotal(); + diff --git a/source/vsearch_src/bitmap.cc b/source/vsearch_src/bitmap.cc new file mode 100644 index 00000000..b8e837cb --- /dev/null +++ b/source/vsearch_src/bitmap.cc @@ -0,0 +1,76 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +bitmap_t * bitmap_init(unsigned int size) +{ + bitmap_t * b = (bitmap_t*) xmalloc(sizeof(bitmap_t)); + b->size = size; + b->bitmap = (unsigned char *) xmalloc((size+7)/8); + return b; +} + +void bitmap_free(bitmap_t* b) +{ + if (b->bitmap) + free(b->bitmap); + free(b); +} diff --git a/source/vsearch_src/bitmap.h b/source/vsearch_src/bitmap.h new file mode 100644 index 00000000..d3275b70 --- /dev/null +++ b/source/vsearch_src/bitmap.h @@ -0,0 +1,99 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +typedef struct bitmap_s +{ + unsigned char * bitmap; /* the actual bitmap */ + unsigned int size; /* size in bits */ +} bitmap_t; + +bitmap_t * bitmap_init(unsigned int size); + +void bitmap_free(bitmap_t* b); + +inline unsigned char bitmap_get(bitmap_t * b, unsigned int x) +{ + return (b->bitmap[x >> 3] >> (x & 7)) & 1; +} + +inline void bitmap_reset_all(bitmap_t * b) +{ + memset(b->bitmap, 0, (b->size+7)/8); +} + +inline void bitmap_set_all(bitmap_t * b) +{ + memset(b->bitmap, 255, (b->size+7)/8); +} + +inline void bitmap_reset(bitmap_t * b, unsigned int x) +{ + b->bitmap[x >> 3] &= ~ (1 << (x & 7)); +} + +inline void bitmap_set(bitmap_t * b, unsigned int x) +{ + b->bitmap[x >> 3] |= 1 << (x & 7); +} + +inline void bitmap_flip(bitmap_t * b, unsigned int x) +{ + b->bitmap[x >> 3] ^= 1 << (x & 7); +} diff --git a/source/vsearch_src/chimera.cc b/source/vsearch_src/chimera.cc new file mode 100644 index 00000000..73c00c9d --- /dev/null +++ b/source/vsearch_src/chimera.cc @@ -0,0 +1,1570 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* + This code implements the method described in this paper: + + Robert C. Edgar, Brian J. Haas, Jose C. Clemente, Christopher Quince + and Rob Knight (2011) + UCHIME improves sensitivity and speed of chimera detection + Bioinformatics, 27, 16, 2194-2200 + http://dx.doi.org/10.1093/bioinformatics/btr381 +*/ + +/* global constants/data, no need for synchronization */ +const int parts = 4; +const int few = 1; +const int maxcandidates = few * parts; +const int rejects = 64; +const double chimera_id = 0.55; +static int tophits; +static pthread_attr_t attr; +static pthread_t * pthread; +static fasta_handle query_fasta_h; + +/* mutexes and global data protected by mutex */ +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; +static unsigned int seqno = 0; +static unsigned long progress = 0; +static int chimera_count = 0; +static int nonchimera_count = 0; +static FILE * fp_chimeras = 0; +static FILE * fp_nonchimeras = 0; +static FILE * fp_uchimealns = 0; +static FILE * fp_uchimeout = 0; +static FILE * fp_borderline = 0; + +#define ALT +//#define ALT2 + +/* information for each query sequence to be checked */ +struct chimera_info_s +{ + int query_alloc; /* the longest query sequence allocated memory for */ + int head_alloc; /* the longest header allocated memory for */ + + int query_no; + char * query_head; + int query_head_len; + int query_size; + char * query_seq; + int query_len; + + struct searchinfo_s si[parts]; + + unsigned int cand_list[maxcandidates]; + int cand_count; + + struct s16info_s * s; + CELL snwscore[maxcandidates]; + unsigned short snwalignmentlength[maxcandidates]; + unsigned short snwmatches[maxcandidates]; + unsigned short snwmismatches[maxcandidates]; + unsigned short snwgaps[maxcandidates]; + long nwscore[maxcandidates]; + long nwalignmentlength[maxcandidates]; + long nwmatches[maxcandidates]; + long nwmismatches[maxcandidates]; + long nwgaps[maxcandidates]; + char * nwcigar[maxcandidates]; + + int match_size; + int * match; + int * smooth; + int * maxsmooth; + + int best_parents[2]; + + int best_target; + char * best_cigar; + + int * maxi; + char * paln[2]; + char * qaln; + char * diffs; + char * votes; + char * model; + char * ignore; + + struct hit * all_hits; +}; + +static struct chimera_info_s * cia; + +void realloc_arrays(struct chimera_info_s * ci) +{ + int maxhlen = ci->query_head_len; + if (maxhlen > ci->head_alloc) + { + ci->head_alloc = maxhlen; + ci->query_head = (char*) xrealloc(ci->query_head, maxhlen + 1); + } + + /* realloc arrays based on query length */ + + int maxqlen = ci->query_len; + if (maxqlen > ci->query_alloc) + { + ci->query_alloc = maxqlen; + + ci->query_seq = (char*) xrealloc(ci->query_seq, maxqlen + 1); + + for(int i=0; i < parts; i++) + { + int maxpartlen = (maxqlen + parts - 1) / parts; + ci->si[i].qsequence = (char*) xrealloc(ci->si[i].qsequence, + maxpartlen + 1); + } + + ci->maxi = (int *) xrealloc(ci->maxi, (maxqlen + 1) * sizeof(int)); + ci->maxsmooth = (int*) xrealloc(ci->maxsmooth, maxqlen * sizeof(int)); + ci->match = (int*) xrealloc(ci->match, + maxcandidates * maxqlen * sizeof(int)); + ci->smooth = (int*) xrealloc(ci->smooth, + maxcandidates * maxqlen * sizeof(int)); + + int maxalnlen = maxqlen + 2 * db_getlongestsequence(); + ci->paln[0] = (char*) xrealloc(ci->paln[0], maxalnlen+1); + ci->paln[1] = (char*) xrealloc(ci->paln[1], maxalnlen+1); + ci->qaln = (char*) xrealloc(ci->qaln, maxalnlen+1); + ci->diffs = (char*) xrealloc(ci->diffs, maxalnlen+1); + ci->votes = (char*) xrealloc(ci->votes, maxalnlen+1); + ci->model = (char*) xrealloc(ci->model, maxalnlen+1); + ci->ignore = (char*) xrealloc(ci->ignore, maxalnlen+1); + } +} + + +int find_best_parents(struct chimera_info_s * ci) +{ + ci->best_parents[0] = -1; + ci->best_parents[1] = -1; + + /* find the positions with matches for each potential parent */ + + char * qseq = ci->query_seq; + + memset(ci->match, 0, ci->cand_count * ci->query_len * sizeof(int)); + + for(int i=0; i < ci->cand_count; i++) + { + char * tseq = db_getsequence(ci->cand_list[i]); + + int qpos = 0; + int tpos = 0; + + char * p = ci->nwcigar[i]; + char * e = p + strlen(p); + + while (p < e) + { + int run = 1; + int scanlength = 0; + sscanf(p, "%d%n", &run, &scanlength); + p += scanlength; + char op = *p++; + switch (op) + { + case 'M': + for(int k=0; kmatch[i * ci->query_len + qpos] = 1; + qpos++; + tpos++; + } + break; + + case 'I': + tpos += run; + break; + + case 'D': + qpos += run; + break; + } + } + } + + /* Compute smoothed identity score in a window for each candidate, */ + /* and record max smoothed score for each position among candidates. */ + + memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); + + const int window = 32; + + for(int i = 0; i < ci->cand_count; i++) + { + int sum = 0; + for(int qpos = 0; qpos < ci->query_len; qpos++) + { + int z = i * ci->query_len + qpos; + sum += ci->match[z]; + if (qpos >= window) + sum -= ci->match[z-window]; + if (qpos >= window-1) + { + ci->smooth[z] = sum; + if (ci->smooth[z] > ci->maxsmooth[qpos]) + ci->maxsmooth[qpos] = ci->smooth[z]; + } + } + } + + /* find first parent */ + + int wins[ci->cand_count]; + + memset(wins, 0, ci->cand_count * sizeof(int)); + + for(int qpos = window-1; qpos < ci->query_len; qpos++) + { + if (ci->maxsmooth[qpos] != 0) + for(int i=0; i < ci->cand_count; i++) + { + int z = i * ci->query_len + qpos; + if (ci->smooth[z] == ci->maxsmooth[qpos]) + wins[i]++; + } + } + + int best1_w = -1; + int best1_i = -1; + int best2_w = -1; + int best2_i = -1; + + for(int i=0; i < ci->cand_count; i++) + { + int w = wins[i]; + if (w > best1_w) + { + best1_w = w; + best1_i = i; + } + } + + if (best1_w >= 0) + { + /* find second parent */ + + /* wipe out matches in positions covered by first parent */ + + for(int qpos = window - 1; qpos < ci->query_len; qpos++) + { + int z = best1_i * ci->query_len + qpos; + if (ci->smooth[z] == ci->maxsmooth[qpos]) + { + for(int i = qpos + 1 - window; i <= qpos; i++) + for(int j = 0; j < ci->cand_count; j++) + ci->match[j * ci->query_len + i] = 0; + } + } + + /* + recompute smoothed identity over window, and record max smoothed + score for each position among remaining candidates + */ + + memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); + + for(int i = 0; i < ci->cand_count; i++) + { + if (i != best1_i) + { + int sum = 0; + for(int qpos = 0; qpos < ci->query_len; qpos++) + { + int z = i * ci->query_len + qpos; + sum += ci->match[z]; + if (qpos >= window) + sum -= ci->match[z-window]; + if (qpos >= window-1) + { + ci->smooth[z] = sum; + if (ci->smooth[z] > ci->maxsmooth[qpos]) + ci->maxsmooth[qpos] = ci->smooth[z]; + } + } + } + } + + /* find second parent */ + + memset(wins, 0, ci->cand_count * sizeof(int)); + + for(int qpos = window-1; qpos < ci->query_len; qpos++) + { + if (ci->maxsmooth[qpos] != 0) + for(int i=0; i < ci->cand_count; i++) + if (i != best1_i) + { + int z = i * ci->query_len + qpos; + if (ci->smooth[z] == ci->maxsmooth[qpos]) + wins[i]++; + } + } + + for(int i=0; i < ci->cand_count; i++) + { + int w = wins[i]; + if (w > best2_w) + { + best2_w = w; + best2_i = i; + } + } + } + + ci->best_parents[0] = best1_i; + ci->best_parents[1] = best2_i; + + return (best1_w >= 0) && (best2_w >= 0); +} + +int eval_parents(struct chimera_info_s * ci) +{ + int status = 1; + + /* create msa */ + + /* find max insertions in front of each position in the query sequence */ + memset(ci->maxi, 0, (ci->query_len + 1) * sizeof(int)); + + for(int j=0; j<2; j++) + { + char * p = ci->nwcigar[ci->best_parents[j]]; + char * e = p + strlen(p); + int pos = 0; + while (p < e) + { + int run = 1; + int scanlength = 0; + sscanf(p, "%d%n", &run, &scanlength); + p += scanlength; + char op = *p++; + switch (op) + { + case 'M': + case 'D': + pos += run; + break; + + case 'I': + if (run > ci->maxi[pos]) + ci->maxi[pos] = run; + break; + } + } + } + + /* find total alignment length */ + int alnlen = 0; + for(int i=0; i < ci->query_len+1; i++) + alnlen += ci->maxi[i]; + alnlen += ci->query_len; + + /* fill in alignment string for query */ + + char * q = ci->qaln; + int qpos = 0; + for (int i=0; i < ci->query_len; i++) + { + for (int j=0; j < ci->maxi[i]; j++) + *q++ = '-'; + *q++ = ci->query_seq[qpos++]; + } + for (int j=0; j < ci->maxi[ci->query_len]; j++) + *q++ = '-'; + *q = 0; + + /* fill in alignment strings for the 2 parents */ + + for(int j=0; j<2; j++) + { + int cand = ci->best_parents[j]; + int target_seqno = ci->cand_list[cand]; + char * target_seq = db_getsequence(target_seqno); + + int inserted = 0; + qpos = 0; + int tpos = 0; + + char * t = ci->paln[j]; + + char * p = ci->nwcigar[cand]; + char * e = p + strlen(p); + while (p < e) + { + int run = 1; + int scanlength = 0; + sscanf(p, "%d%n", &run, &scanlength); + p += scanlength; + char op = *p++; + + if (op == 'I') + { + for(int x=0; x < ci->maxi[qpos]; x++) + { + if (x < run) + *t++ = target_seq[tpos++]; + else + *t++ = '-'; + } + inserted = 1; + } + else + { + for(int x=0; x < run; x++) + { + if (!inserted) + for(int y=0; y < ci->maxi[qpos]; y++) + *t++ = '-'; + + if (op == 'M') + *t++ = target_seq[tpos++]; + else + *t++ = '-'; + + qpos++; + inserted = 0; + } + } + } + + /* add any gaps at the end */ + + if (!inserted) + for(int x=0; x < ci->maxi[qpos]; x++) + *t++ = '-'; + + /* end of sequence string */ + *t = 0; + } + + memset(ci->ignore, 0, alnlen); + + for(int i = 0; i < alnlen; i++) + { + char qsym = chrmap_4bit[(int)(ci->qaln [i])]; + char p1sym = chrmap_4bit[(int)(ci->paln[0][i])]; + char p2sym = chrmap_4bit[(int)(ci->paln[1][i])]; + + /* mark positions to ignore in voting */ + + /* ignore gap positions and those next to the gap */ + if ((!qsym) || (!p1sym) || (!p2sym)) + { + ci->ignore[i] = 1; + if (i>0) + ci->ignore[i-1] = 1; + if (iignore[i+1] = 1; + } + + /* ignore ambigous symbols */ + if ((qsym>4) || (p1sym>4) || (p2sym>4)) + ci->ignore[i] = 1; + + /* lower case parent symbols that differ from query */ + + if (p1sym && (p1sym != qsym)) + ci->paln[0][i] = tolower(ci->paln[0][i]); + + if (p2sym && (p2sym != qsym)) + ci->paln[1][i] = tolower(ci->paln[1][i]); + + /* compute diffs */ + + char diff; + + if (qsym && p1sym && p2sym) + { + if (p1sym == p2sym) + { + if (qsym == p1sym) + diff = ' '; + else + diff = 'N'; + } + else + { + if (qsym == p1sym) + diff = 'A'; + else if (qsym == p2sym) + diff = 'B'; + else + diff = '?'; + } + } + else + diff = ' '; + + ci->diffs[i] = diff; + } + + ci->diffs[alnlen] = 0; + + /* compute score */ + + int sumA = 0; + int sumB = 0; + int sumN = 0; + + for (int i = 0; i < alnlen; i++) + if (!ci->ignore[i]) + { + char diff = ci->diffs[i]; + + if (diff == 'A') + sumA++; + else if (diff == 'B') + sumB++; + else if (diff != ' ') + sumN++; + } + + int left_n = 0; + int left_a = 0; + int left_y = 0; + int right_n = sumA; + int right_a = sumN; + int right_y = sumB; + + double best_h = -1; + int best_i = -1; + int best_reverse = 0; + + int best_left_y = 0; + int best_right_y = 0; + int best_left_n = 0; + int best_right_n = 0; + int best_left_a = 0; + int best_right_a = 0; + + for (int i=0; iignore[i]) + { + char diff = ci->diffs[i]; + if (diff != ' ') + { + if (diff == 'A') + { + left_y++; + right_n--; + } + else if (diff == 'B') + { + left_n++; + right_y--; + } + else + { + left_a++; + right_a--; + } + + double left_h, right_h, h; + + if ((left_y > left_n) && (right_y > right_n)) + { + left_h = left_y / (opt_xn * (left_n + opt_dn) + left_a); + right_h = right_y / (opt_xn * (right_n + opt_dn) + right_a); + h = left_h * right_h; + + if (h > best_h) + { + best_reverse = 0; + best_h = h; + best_i = i; + best_left_n = left_n; + best_left_y = left_y; + best_left_a = left_a; + best_right_n = right_n; + best_right_y = right_y; + best_right_a = right_a; + } + } + else if ((left_n > left_y) && (right_n > right_y)) + { + /* swap left/right and yes/no */ + + left_h = left_n / (opt_xn * (left_y + opt_dn) + left_a); + right_h = right_n / (opt_xn * (right_y + opt_dn) + right_a); + h = left_h * right_h; + + if (h > best_h) + { + best_reverse = 1; + best_h = h; + best_i = i; + best_left_n = left_y; + best_left_y = left_n; + best_left_a = left_a; + best_right_n = right_y; + best_right_y = right_n; + best_right_a = right_a; + } + } + } + } + } + + if (best_h >= 0.0) + { + status = 2; + + /* flip A and B if necessary */ + + if (best_reverse) + for(int i = 0; i < alnlen; i++) + { + char diff = ci->diffs[i]; + if (diff == 'A') + ci->diffs[i] = 'B'; + else if (diff == 'B') + ci->diffs[i] = 'A'; + } + + /* fill in votes and model */ + + for(int i = 0; i < alnlen; i++) + { + char m = i <= best_i ? 'A' : 'B'; + ci->model[i] = m; + + char v = ' '; + if (!ci->ignore[i]) + { + char d = ci->diffs[i]; + + if ((d == 'A') || (d == 'B')) + { + if (d == m) + v = '+'; + else + v = '!'; + } + else if ((d == 'N') || (d == '?')) + { + v = '0'; + } + } + ci->votes[i] = v; + + /* lower case diffs for no votes */ + if (v == '!') + ci->diffs[i] = tolower(ci->diffs[i]); + } + + /* fill in crossover region */ + + for(int i = best_i + 1; i < alnlen; i++) + if ((ci->diffs[i] == ' ') || (ci->diffs[i] == 'A')) + ci->model[i] = 'x'; + else + break; + + ci->votes[alnlen] = 0; + ci->model[alnlen] = 0; + + /* count matches */ + + int index_a = best_reverse ? 1 : 0; + int index_b = best_reverse ? 0 : 1; + + int match_QA = 0; + int match_QB = 0; + int match_AB = 0; + int match_QM = 0; + int cols = 0; + + for(int i = 0; i < alnlen; i++) + { + if (! ci->ignore[i]) + { + cols++; + + char qsym = chrmap_4bit[(int)(ci->qaln[i])]; + char asym = chrmap_4bit[(int)(ci->paln[index_a][i])]; + char bsym = chrmap_4bit[(int)(ci->paln[index_b][i])]; + char msym = i <= best_i ? asym : bsym; + + if (qsym == asym) + match_QA++; + + if (qsym == bsym) + match_QB++; + + if (asym == bsym) + match_AB++; + + if (qsym == msym) + match_QM++; + } + } + + int seqno_a = ci->cand_list[ci->best_parents[index_a]]; + int seqno_b = ci->cand_list[ci->best_parents[index_b]]; + + double QA = 100.0 * match_QA / cols; + double QB = 100.0 * match_QB / cols; + double AB = 100.0 * match_AB / cols; + double QT = MAX(QA, QB); + double QM = 100.0 * match_QM / cols; + double divdiff = QM - QT; + double divfrac = 100.0 * divdiff / QT; + + int sumL = best_left_n + best_left_a + best_left_y; + int sumR = best_right_n + best_right_a + best_right_y; + + if (best_h >= opt_minh) + { + status = 3; + if ((divdiff >= opt_mindiv) && + (sumL >= opt_mindiffs) && + (sumR >= opt_mindiffs)) + status = 4; + } + + /* print alignment */ + + pthread_mutex_lock(&mutex_output); + + if (opt_uchimealns && (status == 4)) + { + fprintf(fp_uchimealns, "\n"); + fprintf(fp_uchimealns, "----------------------------------------" + "--------------------------------\n"); + fprintf(fp_uchimealns, "Query (%5d nt) %s\n", + ci->query_len, ci->query_head); + fprintf(fp_uchimealns, "ParentA (%5lu nt) %s\n", + db_getsequencelen(seqno_a), + db_getheader(seqno_a)); + fprintf(fp_uchimealns, "ParentB (%5lu nt) %s\n", + db_getsequencelen(seqno_b), + db_getheader(seqno_b)); + fprintf(fp_uchimealns, "\n"); + + int width = opt_alignwidth > 0 ? opt_alignwidth : alnlen; + qpos = 0; + int p1pos = 0; + int p2pos = 0; + int rest = alnlen; + + for(int i = 0; i < alnlen; i += width) + { + /* count non-gap symbols on current line */ + + int qnt, p1nt, p2nt; + qnt = p1nt = p2nt = 0; + + int w = MIN(rest,width); + + for(int j=0; jqaln[i+j] != '-') + qnt++; + if (ci->paln[0][i+j] != '-') + p1nt++; + if (ci->paln[1][i+j] != '-') + p2nt++; + } + + if (! best_reverse) + { + fprintf(fp_uchimealns, "A %5d %.*s %d\n", + p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); + fprintf(fp_uchimealns, "Q %5d %.*s %d\n", + qpos+1, w, ci->qaln+i, qpos+qnt); + fprintf(fp_uchimealns, "B %5d %.*s %d\n", + p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); + } + else + { + fprintf(fp_uchimealns, "A %5d %.*s %d\n", + p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); + fprintf(fp_uchimealns, "Q %5d %.*s %d\n", + qpos+1, w, ci->qaln+i, qpos+qnt); + fprintf(fp_uchimealns, "B %5d %.*s %d\n", + p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); + } + + fprintf(fp_uchimealns, "Diffs %.*s\n", w, ci->diffs+i); + fprintf(fp_uchimealns, "Votes %.*s\n", w, ci->votes+i); + fprintf(fp_uchimealns, "Model %.*s\n", w, ci->model+i); + fprintf(fp_uchimealns, "\n"); + + qpos += qnt; + p1pos += p1nt; + p2pos += p2nt; + rest -= width; + } + + fprintf(fp_uchimealns, "Ids. QA %.1f%%, QB %.1f%%, AB %.1f%%, " + "QModel %.1f%%, Div. %+.1f%%\n", + QA, QB, AB, QM, divfrac); + + fprintf(fp_uchimealns, "Diffs Left %d: N %d, A %d, Y %d (%.1f%%); " + "Right %d: N %d, A %d, Y %d (%.1f%%), Score %.4f\n", + sumL, best_left_n, best_left_a, best_left_y, + 100.0 * best_left_y / sumL, + sumR, best_right_n, best_right_a, best_right_y, + 100.0 * best_right_y / sumR, + best_h); + } + + if (opt_uchimeout) + { + if (opt_uchimeout5) + { + fprintf(fp_uchimeout, + "%.4f\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" + "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", + best_h, + ci->query_head, + db_getheader(seqno_a), + db_getheader(seqno_b), + QM, + QA, + QB, + AB, + QT, + best_left_y, + best_left_n, + best_left_a, + best_right_y, + best_right_n, + best_right_a, + divdiff, + status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); + } + else + { + fprintf(fp_uchimeout, + "%.4f\t%s\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" + "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", + best_h, + ci->query_head, + db_getheader(seqno_a), + db_getheader(seqno_b), + db_getheader(QA >= QB ? seqno_a : seqno_b), + QM, + QA, + QB, + AB, + QT, + best_left_y, + best_left_n, + best_left_a, + best_right_y, + best_right_n, + best_right_a, + divdiff, + status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); + } + } + pthread_mutex_unlock(&mutex_output); + } + + return status; +} + +/* + new chimeric status: + 0: no parents, non-chimeric + 1: score < 0 (no alignment), non-chimeric + 2: score < minh, non-chimeric + 3: score >= minh, suspicious + 4: score >= minh && (divdiff >= opt_mindiv) && ..., chimeric +*/ + +void query_init(struct searchinfo_s * si) +{ + si->qsequence = 0; + si->kmers = 0; + si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); + si->kmers = (count_t *) xmalloc(db_getsequencecount() * + sizeof(count_t) + 32); + si->hit_count = 0; + si->uh = unique_init(); + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + si->nw = nw_init(); + si->m = minheap_init(tophits); +} + +void query_exit(struct searchinfo_s * si) +{ + search16_exit(si->s); + unique_exit(si->uh); + minheap_exit(si->m); + nw_exit(si->nw); + + if (si->qsequence) + free(si->qsequence); + if (si->hits) + free(si->hits); + if (si->kmers) + free(si->kmers); +} + +void partition_query(struct chimera_info_s * ci) +{ + int rest = ci->query_len; + char * p = ci->query_seq; + for (int i=0; isi + i; + + si->query_no = ci->query_no; + si->strand = 0; + si->qsize = ci->query_size; + si->query_head_len = ci->query_head_len; + si->query_head = ci->query_head; + si->qseqlen = len; + strncpy(si->qsequence, p, len); + si->qsequence[len] = 0; + + rest -= len; + p += len; + } +} + +void chimera_thread_init(struct chimera_info_s * ci) +{ + ci->query_alloc = 0; + ci->head_alloc = 0; + ci->query_head = 0; + ci->query_seq = 0; + ci->maxi = 0; + ci->maxsmooth = 0; + ci->match = 0; + ci->smooth = 0; + ci->paln[0] = 0; + ci->paln[1] = 0; + ci->qaln = 0; + ci->diffs = 0; + ci->votes = 0; + ci->model = 0; + ci->ignore = 0; + + for(int i = 0; i < parts; i++) + query_init(ci->si + i); + + ci->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); +} + +void chimera_thread_exit(struct chimera_info_s * ci) +{ + search16_exit(ci->s); + + for(int i = 0; i < parts; i++) + query_exit(ci->si + i); + + if (ci->maxsmooth) + free(ci->maxsmooth); + if (ci->match) + free(ci->match); + if (ci->smooth) + free(ci->smooth); + if (ci->diffs) + free(ci->diffs); + if (ci->votes) + free(ci->votes); + if (ci->model) + free(ci->model); + if (ci->ignore) + free(ci->ignore); + if (ci->maxi) + free(ci->maxi); + if (ci->qaln) + free(ci->qaln); + if (ci->paln[0]) + free(ci->paln[0]); + if (ci->paln[1]) + free(ci->paln[1]); + + if (ci->query_seq) + free(ci->query_seq); + if (ci->query_head) + free(ci->query_head); +} + +unsigned long chimera_thread_core(struct chimera_info_s * ci) +{ + chimera_thread_init(ci); + + struct hit * allhits_list = (struct hit *) xmalloc(maxcandidates * + sizeof(struct hit)); + + LinearMemoryAligner lma; + + long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); + + lma.set_parameters(scorematrix, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + while(1) + { + /* get next sequence */ + + pthread_mutex_lock(&mutex_input); + + if (opt_uchime_ref) + { + if (fasta_next(query_fasta_h, ! opt_notrunclabels, + chrmap_upcase)) + { + ci->query_head_len = fasta_get_header_length(query_fasta_h); + ci->query_len = fasta_get_sequence_length(query_fasta_h); + ci->query_no = fasta_get_seqno(query_fasta_h); + ci->query_size = fasta_get_abundance(query_fasta_h); + + /* if necessary expand memory for arrays based on query length */ + realloc_arrays(ci); + + /* copy the data locally (query seq, head) */ + strcpy(ci->query_head, fasta_get_header(query_fasta_h)); + strcpy(ci->query_seq, fasta_get_sequence(query_fasta_h)); + } + else + { + pthread_mutex_unlock(&mutex_input); + break; /* end while loop */ + } + } + else + { + if (seqno < db_getsequencecount()) + { + ci->query_no = seqno; + ci->query_head_len = db_getheaderlen(seqno); + ci->query_len = db_getsequencelen(seqno); + ci->query_size = db_getabundance(seqno); + + /* if necessary expand memory for arrays based on query length */ + realloc_arrays(ci); + + strcpy(ci->query_head, db_getheader(seqno)); + strcpy(ci->query_seq, db_getsequence(seqno)); + } + else + { + pthread_mutex_unlock(&mutex_input); + break; /* end while loop */ + } + } + + pthread_mutex_unlock(&mutex_input); + + + + int status = 0; + + /* partition query */ + partition_query(ci); + + /* perform searches and collect candidate parents */ + ci->cand_count = 0; + int allhits_count = 0; + + for (int i=0; isi+i); + search_joinhits(ci->si+i, 0, & hits, & hit_count); + for(int j=0; jcand_count; k++) + if (ci->cand_list[k] == target) + break; + + if (k == ci->cand_count) + ci->cand_list[ci->cand_count++] = target; + + /* deallocate cigar */ + if (allhits_list[i].nwalignment) + free(allhits_list[i].nwalignment); + } + + + /* align full query to each candidate */ + + search16_qprep(ci->s, ci->query_seq, ci->query_len); + + search16(ci->s, + ci->cand_count, + ci->cand_list, + ci->snwscore, + ci->snwalignmentlength, + ci->snwmatches, + ci->snwmismatches, + ci->snwgaps, + ci->nwcigar); + + for(int i=0; i < ci->cand_count; i++) + { + long target = ci->cand_list[i]; + long nwscore = ci->snwscore[i]; + char * nwcigar; + long nwalignmentlength; + long nwmatches; + long nwmismatches; + long nwgaps; + + if (nwscore == SHRT_MAX) + { + /* In case the SIMD aligner cannot align, + perform a new alignment with the + linear memory aligner */ + + char * tseq = db_getsequence(target); + long tseqlen = db_getsequencelen(target); + + if (ci->nwcigar[i]) + free(ci->nwcigar[i]); + + nwcigar = xstrdup(lma.align(ci->query_seq, + tseq, + ci->query_len, + tseqlen)); + lma.alignstats(nwcigar, + ci->query_seq, + tseq, + & nwscore, + & nwalignmentlength, + & nwmatches, + & nwmismatches, + & nwgaps); + + ci->nwcigar[i] = nwcigar; + ci->nwscore[i] = nwscore; + ci->nwalignmentlength[i] = nwalignmentlength; + ci->nwmatches[i] = nwmatches; + ci->nwmismatches[i] = nwmismatches; + ci->nwgaps[i] = nwgaps; + } + else + { + ci->nwscore[i] = ci->snwscore[i]; + ci->nwalignmentlength[i] = ci->snwalignmentlength[i]; + ci->nwmatches[i] = ci->snwmatches[i]; + ci->nwmismatches[i] = ci->snwmismatches[i]; + ci->nwgaps[i] = ci->snwgaps[i]; + } + } + + + /* find the best pair of parents, then compute score for them */ + + if (find_best_parents(ci)) + status = eval_parents(ci); + else + status = 0; + + /* output results */ + + pthread_mutex_lock(&mutex_output); + + if (status == 4) + { + chimera_count++; + + if (opt_chimeras) + { + fprint_fasta_hdr_only(fp_chimeras, ci->query_head); + fprint_fasta_seq_only(fp_chimeras, ci->query_seq, + ci->query_len, opt_fasta_width); + } + + +#ifdef ALT2 + if (opt_uchime_denovo) + dbindex_addsequence(seqno); +#endif + } + + if (status == 3) + { + if (opt_borderline) + { + fprint_fasta_hdr_only(fp_borderline, ci->query_head); + fprint_fasta_seq_only(fp_borderline, ci->query_seq, + ci->query_len, opt_fasta_width); + } + } + + if (status < 3) + { + nonchimera_count++; + + /* output no parents, no chimeras */ + if ((status < 2) && opt_uchimeout) + { + if (opt_uchimeout5) + fprintf(fp_uchimeout, + "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*" + "\t0\t0\t0\t0\t0\t0\t*\tN\n", + ci->query_head); + else + fprintf(fp_uchimeout, + "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*\t*" + "\t0\t0\t0\t0\t0\t0\t*\tN\n", + ci->query_head); + } + +#ifndef ALT + /* uchime_denovo: add non-chimeras to db */ + if (opt_uchime_denovo) + dbindex_addsequence(seqno); +#endif + + if (opt_nonchimeras) + { + int size = ci->query_size; + + if (opt_relabel_sha1 || opt_relabel_md5) + { + char * seq = ci->query_seq; + int len = ci->query_len; + + fprintf(fp_nonchimeras, ">"); + + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp_nonchimeras, seq, len); + else + fprint_seq_digest_md5(fp_nonchimeras, seq, len); + + if (opt_sizeout) + fprintf(fp_nonchimeras, ";size=%d;\n", size); + else + fprintf(fp_nonchimeras, "\n"); + + } + else if (opt_relabel) + { + if (opt_sizeout) + fprintf(fp_nonchimeras, ">%s%d;size=%d;\n", + opt_relabel, nonchimera_count, size); + else + fprintf(fp_nonchimeras, ">%s%d\n", + opt_relabel, nonchimera_count); + } + else + fprintf(fp_nonchimeras, ">%s\n", ci->query_head); + + fprint_fasta_seq_only(fp_nonchimeras, ci->query_seq, + ci->query_len, opt_fasta_width); + } + } + + for (int i=0; i < ci->cand_count; i++) + if (ci->nwcigar[i]) + free(ci->nwcigar[i]); + + if (opt_uchime_ref) + progress = fasta_get_position(query_fasta_h); + else + progress += db_getsequencelen(seqno); + + progress_update(progress); + + seqno++; + + pthread_mutex_unlock(&mutex_output); + } + + if (allhits_list) + free(allhits_list); + + chimera_thread_exit(ci); + + free(scorematrix); + + return 0; +} + +void * chimera_thread_worker(void * vp) +{ + return (void *) chimera_thread_core(cia + (long) vp); +} + +void chimera_threads_run() +{ + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* create worker threads */ + for(long t=0; t, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void chimera(); diff --git a/source/vsearch_src/cityhash/city.cc b/source/vsearch_src/cityhash/city.cc new file mode 100644 index 00000000..29fd4a0f --- /dev/null +++ b/source/vsearch_src/cityhash/city.cc @@ -0,0 +1,628 @@ +// Copyright (c) 2011 Google, Inc. +// +// Permission is hereby granted, free of charge, to any person obtaining a copy +// of this software and associated documentation files (the "Software"), to deal +// in the Software without restriction, including without limitation the rights +// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +// copies of the Software, and to permit persons to whom the Software is +// furnished to do so, subject to the following conditions: +// +// The above copyright notice and this permission notice shall be included in +// all copies or substantial portions of the Software. +// +// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +// THE SOFTWARE. +// +// CityHash, by Geoff Pike and Jyrki Alakuijala +// +// This file provides CityHash64() and related functions. +// +// It's probably possible to create even faster hash functions by +// writing a program that systematically explores some of the space of +// possible hash functions, by using SIMD instructions, or by +// compromising on hash quality. + + +#include +//#include "config.h" +#include +#include // for memcpy and memset + +using namespace std; + +static uint64 UNALIGNED_LOAD64(const char *p) { + uint64 result; + memcpy(&result, p, sizeof(result)); + return result; +} + +static uint32 UNALIGNED_LOAD32(const char *p) { + uint32 result; + memcpy(&result, p, sizeof(result)); + return result; +} + +#ifdef _MSC_VER + +#include +#define bswap_32(x) _byteswap_ulong(x) +#define bswap_64(x) _byteswap_uint64(x) + +#elif defined(__APPLE__) + +// Mac OS X / Darwin features +#include +#define bswap_32(x) OSSwapInt32(x) +#define bswap_64(x) OSSwapInt64(x) + +#elif defined(__NetBSD__) + +#include +#include +#if defined(__BSWAP_RENAME) && !defined(__bswap_32) +#define bswap_32(x) bswap32(x) +#define bswap_64(x) bswap64(x) +#endif + +#else + +#include + +#endif + +#ifdef WORDS_BIGENDIAN +#define uint32_in_expected_order(x) (bswap_32(x)) +#define uint64_in_expected_order(x) (bswap_64(x)) +#else +#define uint32_in_expected_order(x) (x) +#define uint64_in_expected_order(x) (x) +#endif + +#if !defined(LIKELY) +#if HAVE_BUILTIN_EXPECT +#define LIKELY(x) (__builtin_expect(!!(x), 1)) +#else +#define LIKELY(x) (x) +#endif +#endif + +static uint64 Fetch64(const char *p) { + return uint64_in_expected_order(UNALIGNED_LOAD64(p)); +} + +static uint32 Fetch32(const char *p) { + return uint32_in_expected_order(UNALIGNED_LOAD32(p)); +} + +// Some primes between 2^63 and 2^64 for various uses. +static const uint64 k0 = 0xc3a5c85c97cb3127ULL; +static const uint64 k1 = 0xb492b66fbe98f273ULL; +static const uint64 k2 = 0x9ae16a3b2f90404fULL; + +// Magic numbers for 32-bit hashing. Copied from Murmur3. +static const uint32_t c1 = 0xcc9e2d51; +static const uint32_t c2 = 0x1b873593; + +// A 32-bit to 32-bit integer hash copied from Murmur3. +static uint32 fmix(uint32 h) +{ + h ^= h >> 16; + h *= 0x85ebca6b; + h ^= h >> 13; + h *= 0xc2b2ae35; + h ^= h >> 16; + return h; +} + +static uint32 Rotate32(uint32 val, int shift) { + // Avoid shifting by 32: doing so yields an undefined result. + return shift == 0 ? val : ((val >> shift) | (val << (32 - shift))); +} + +#undef PERMUTE3 +#define PERMUTE3(a, b, c) do { std::swap(a, b); std::swap(a, c); } while (0) + +static uint32 Mur(uint32 a, uint32 h) { + // Helper from Murmur3 for combining two 32-bit values. + a *= c1; + a = Rotate32(a, 17); + a *= c2; + h ^= a; + h = Rotate32(h, 19); + return h * 5 + 0xe6546b64; +} + +static uint32 Hash32Len13to24(const char *s, size_t len) { + uint32 a = Fetch32(s - 4 + (len >> 1)); + uint32 b = Fetch32(s + 4); + uint32 c = Fetch32(s + len - 8); + uint32 d = Fetch32(s + (len >> 1)); + uint32 e = Fetch32(s); + uint32 f = Fetch32(s + len - 4); + uint32 h = len; + + return fmix(Mur(f, Mur(e, Mur(d, Mur(c, Mur(b, Mur(a, h))))))); +} + +static uint32 Hash32Len0to4(const char *s, size_t len) { + uint32 b = 0; + uint32 c = 9; + for (int i = 0; i < len; i++) { + signed char v = s[i]; + b = b * c1 + v; + c ^= b; + } + return fmix(Mur(b, Mur(len, c))); +} + +static uint32 Hash32Len5to12(const char *s, size_t len) { + uint32 a = len, b = len * 5, c = 9, d = b; + a += Fetch32(s); + b += Fetch32(s + len - 4); + c += Fetch32(s + ((len >> 1) & 4)); + return fmix(Mur(c, Mur(b, Mur(a, d)))); +} + +uint32 CityHash32(const char *s, size_t len) { + if (len <= 24) { + return len <= 12 ? + (len <= 4 ? Hash32Len0to4(s, len) : Hash32Len5to12(s, len)) : + Hash32Len13to24(s, len); + } + + // len > 24 + uint32 h = len, g = c1 * len, f = g; + uint32 a0 = Rotate32(Fetch32(s + len - 4) * c1, 17) * c2; + uint32 a1 = Rotate32(Fetch32(s + len - 8) * c1, 17) * c2; + uint32 a2 = Rotate32(Fetch32(s + len - 16) * c1, 17) * c2; + uint32 a3 = Rotate32(Fetch32(s + len - 12) * c1, 17) * c2; + uint32 a4 = Rotate32(Fetch32(s + len - 20) * c1, 17) * c2; + h ^= a0; + h = Rotate32(h, 19); + h = h * 5 + 0xe6546b64; + h ^= a2; + h = Rotate32(h, 19); + h = h * 5 + 0xe6546b64; + g ^= a1; + g = Rotate32(g, 19); + g = g * 5 + 0xe6546b64; + g ^= a3; + g = Rotate32(g, 19); + g = g * 5 + 0xe6546b64; + f += a4; + f = Rotate32(f, 19); + f = f * 5 + 0xe6546b64; + size_t iters = (len - 1) / 20; + do { + uint32 a0 = Rotate32(Fetch32(s) * c1, 17) * c2; + uint32 a1 = Fetch32(s + 4); + uint32 a2 = Rotate32(Fetch32(s + 8) * c1, 17) * c2; + uint32 a3 = Rotate32(Fetch32(s + 12) * c1, 17) * c2; + uint32 a4 = Fetch32(s + 16); + h ^= a0; + h = Rotate32(h, 18); + h = h * 5 + 0xe6546b64; + f += a1; + f = Rotate32(f, 19); + f = f * c1; + g += a2; + g = Rotate32(g, 18); + g = g * 5 + 0xe6546b64; + h ^= a3 + a1; + h = Rotate32(h, 19); + h = h * 5 + 0xe6546b64; + g ^= a4; + g = bswap_32(g) * 5; + h += a4 * 5; + h = bswap_32(h); + f += a0; + PERMUTE3(f, h, g); + s += 20; + } while (--iters != 0); + g = Rotate32(g, 11) * c1; + g = Rotate32(g, 17) * c1; + f = Rotate32(f, 11) * c1; + f = Rotate32(f, 17) * c1; + h = Rotate32(h + g, 19); + h = h * 5 + 0xe6546b64; + h = Rotate32(h, 17) * c1; + h = Rotate32(h + f, 19); + h = h * 5 + 0xe6546b64; + h = Rotate32(h, 17) * c1; + return h; +} + +// Bitwise right rotate. Normally this will compile to a single +// instruction, especially if the shift is a manifest constant. +static uint64 Rotate(uint64 val, int shift) { + // Avoid shifting by 64: doing so yields an undefined result. + return shift == 0 ? val : ((val >> shift) | (val << (64 - shift))); +} + +static uint64 ShiftMix(uint64 val) { + return val ^ (val >> 47); +} + +static uint64 HashLen16(uint64 u, uint64 v) { + return Hash128to64(uint128(u, v)); +} + +static uint64 HashLen16(uint64 u, uint64 v, uint64 mul) { + // Murmur-inspired hashing. + uint64 a = (u ^ v) * mul; + a ^= (a >> 47); + uint64 b = (v ^ a) * mul; + b ^= (b >> 47); + b *= mul; + return b; +} + +static uint64 HashLen0to16(const char *s, size_t len) { + if (len >= 8) { + uint64 mul = k2 + len * 2; + uint64 a = Fetch64(s) + k2; + uint64 b = Fetch64(s + len - 8); + uint64 c = Rotate(b, 37) * mul + a; + uint64 d = (Rotate(a, 25) + b) * mul; + return HashLen16(c, d, mul); + } + if (len >= 4) { + uint64 mul = k2 + len * 2; + uint64 a = Fetch32(s); + return HashLen16(len + (a << 3), Fetch32(s + len - 4), mul); + } + if (len > 0) { + uint8 a = s[0]; + uint8 b = s[len >> 1]; + uint8 c = s[len - 1]; + uint32 y = static_cast(a) + (static_cast(b) << 8); + uint32 z = len + (static_cast(c) << 2); + return ShiftMix(y * k2 ^ z * k0) * k2; + } + return k2; +} + +// This probably works well for 16-byte strings as well, but it may be overkill +// in that case. +static uint64 HashLen17to32(const char *s, size_t len) { + uint64 mul = k2 + len * 2; + uint64 a = Fetch64(s) * k1; + uint64 b = Fetch64(s + 8); + uint64 c = Fetch64(s + len - 8) * mul; + uint64 d = Fetch64(s + len - 16) * k2; + return HashLen16(Rotate(a + b, 43) + Rotate(c, 30) + d, + a + Rotate(b + k2, 18) + c, mul); +} + +// Return a 16-byte hash for 48 bytes. Quick and dirty. +// Callers do best to use "random-looking" values for a and b. +static pair WeakHashLen32WithSeeds( + uint64 w, uint64 x, uint64 y, uint64 z, uint64 a, uint64 b) { + a += w; + b = Rotate(b + a + z, 21); + uint64 c = a; + a += x; + a += y; + b += Rotate(a, 44); + return make_pair(a + z, b + c); +} + +// Return a 16-byte hash for s[0] ... s[31], a, and b. Quick and dirty. +static pair WeakHashLen32WithSeeds( + const char* s, uint64 a, uint64 b) { + return WeakHashLen32WithSeeds(Fetch64(s), + Fetch64(s + 8), + Fetch64(s + 16), + Fetch64(s + 24), + a, + b); +} + +// Return an 8-byte hash for 33 to 64 bytes. +static uint64 HashLen33to64(const char *s, size_t len) { + uint64 mul = k2 + len * 2; + uint64 a = Fetch64(s) * k2; + uint64 b = Fetch64(s + 8); + uint64 c = Fetch64(s + len - 24); + uint64 d = Fetch64(s + len - 32); + uint64 e = Fetch64(s + 16) * k2; + uint64 f = Fetch64(s + 24) * 9; + uint64 g = Fetch64(s + len - 8); + uint64 h = Fetch64(s + len - 16) * mul; + uint64 u = Rotate(a + g, 43) + (Rotate(b, 30) + c) * 9; + uint64 v = ((a + g) ^ d) + f + 1; + uint64 w = bswap_64((u + v) * mul) + h; + uint64 x = Rotate(e + f, 42) + c; + uint64 y = (bswap_64((v + w) * mul) + g) * mul; + uint64 z = e + f + c; + a = bswap_64((x + z) * mul + y) + b; + b = ShiftMix((z + a) * mul + d + h) * mul; + return b + x; +} + +uint64 CityHash64(const char *s, size_t len) { + if (len <= 32) { + if (len <= 16) { + return HashLen0to16(s, len); + } else { + return HashLen17to32(s, len); + } + } else if (len <= 64) { + return HashLen33to64(s, len); + } + + // For strings over 64 bytes we hash the end first, and then as we + // loop we keep 56 bytes of state: v, w, x, y, and z. + uint64 x = Fetch64(s + len - 40); + uint64 y = Fetch64(s + len - 16) + Fetch64(s + len - 56); + uint64 z = HashLen16(Fetch64(s + len - 48) + len, Fetch64(s + len - 24)); + pair v = WeakHashLen32WithSeeds(s + len - 64, len, z); + pair w = WeakHashLen32WithSeeds(s + len - 32, y + k1, x); + x = x * k1 + Fetch64(s); + + // Decrease len to the nearest multiple of 64, and operate on 64-byte chunks. + len = (len - 1) & ~static_cast(63); + do { + x = Rotate(x + y + v.first + Fetch64(s + 8), 37) * k1; + y = Rotate(y + v.second + Fetch64(s + 48), 42) * k1; + x ^= w.second; + y += v.first + Fetch64(s + 40); + z = Rotate(z + w.first, 33) * k1; + v = WeakHashLen32WithSeeds(s, v.second * k1, x + w.first); + w = WeakHashLen32WithSeeds(s + 32, z + w.second, y + Fetch64(s + 16)); + std::swap(z, x); + s += 64; + len -= 64; + } while (len != 0); + return HashLen16(HashLen16(v.first, w.first) + ShiftMix(y) * k1 + z, + HashLen16(v.second, w.second) + x); +} + +uint64 CityHash64WithSeed(const char *s, size_t len, uint64 seed) { + return CityHash64WithSeeds(s, len, k2, seed); +} + +uint64 CityHash64WithSeeds(const char *s, size_t len, + uint64 seed0, uint64 seed1) { + return HashLen16(CityHash64(s, len) - seed0, seed1); +} + +// A subroutine for CityHash128(). Returns a decent 128-bit hash for strings +// of any length representable in signed long. Based on City and Murmur. +static uint128 CityMurmur(const char *s, size_t len, uint128 seed) { + uint64 a = Uint128Low64(seed); + uint64 b = Uint128High64(seed); + uint64 c = 0; + uint64 d = 0; + signed long l = len - 16; + if (l <= 0) { // len <= 16 + a = ShiftMix(a * k1) * k1; + c = b * k1 + HashLen0to16(s, len); + d = ShiftMix(a + (len >= 8 ? Fetch64(s) : c)); + } else { // len > 16 + c = HashLen16(Fetch64(s + len - 8) + k1, a); + d = HashLen16(b + len, c + Fetch64(s + len - 16)); + a += d; + do { + a ^= ShiftMix(Fetch64(s) * k1) * k1; + a *= k1; + b ^= a; + c ^= ShiftMix(Fetch64(s + 8) * k1) * k1; + c *= k1; + d ^= c; + s += 16; + l -= 16; + } while (l > 0); + } + a = HashLen16(a, c); + b = HashLen16(d, b); + return uint128(a ^ b, HashLen16(b, a)); +} + +uint128 CityHash128WithSeed(const char *s, size_t len, uint128 seed) { + if (len < 128) { + return CityMurmur(s, len, seed); + } + + // We expect len >= 128 to be the common case. Keep 56 bytes of state: + // v, w, x, y, and z. + pair v, w; + uint64 x = Uint128Low64(seed); + uint64 y = Uint128High64(seed); + uint64 z = len * k1; + v.first = Rotate(y ^ k1, 49) * k1 + Fetch64(s); + v.second = Rotate(v.first, 42) * k1 + Fetch64(s + 8); + w.first = Rotate(y + z, 35) * k1 + x; + w.second = Rotate(x + Fetch64(s + 88), 53) * k1; + + // This is the same inner loop as CityHash64(), manually unrolled. + do { + x = Rotate(x + y + v.first + Fetch64(s + 8), 37) * k1; + y = Rotate(y + v.second + Fetch64(s + 48), 42) * k1; + x ^= w.second; + y += v.first + Fetch64(s + 40); + z = Rotate(z + w.first, 33) * k1; + v = WeakHashLen32WithSeeds(s, v.second * k1, x + w.first); + w = WeakHashLen32WithSeeds(s + 32, z + w.second, y + Fetch64(s + 16)); + std::swap(z, x); + s += 64; + x = Rotate(x + y + v.first + Fetch64(s + 8), 37) * k1; + y = Rotate(y + v.second + Fetch64(s + 48), 42) * k1; + x ^= w.second; + y += v.first + Fetch64(s + 40); + z = Rotate(z + w.first, 33) * k1; + v = WeakHashLen32WithSeeds(s, v.second * k1, x + w.first); + w = WeakHashLen32WithSeeds(s + 32, z + w.second, y + Fetch64(s + 16)); + std::swap(z, x); + s += 64; + len -= 128; + } while (LIKELY(len >= 128)); + x += Rotate(v.first + z, 49) * k0; + y = y * k0 + Rotate(w.second, 37); + z = z * k0 + Rotate(w.first, 27); + w.first *= 9; + v.first *= k0; + // If 0 < len < 128, hash up to 4 chunks of 32 bytes each from the end of s. + for (size_t tail_done = 0; tail_done < len; ) { + tail_done += 32; + y = Rotate(x + y, 42) * k0 + v.second; + w.first += Fetch64(s + len - tail_done + 16); + x = x * k0 + w.first; + z += w.second + Fetch64(s + len - tail_done); + w.second += v.first; + v = WeakHashLen32WithSeeds(s + len - tail_done, v.first + z, v.second); + v.first *= k0; + } + // At this point our 56 bytes of state should contain more than + // enough information for a strong 128-bit hash. We use two + // different 56-byte-to-8-byte hashes to get a 16-byte final result. + x = HashLen16(x, v.first); + y = HashLen16(y + z, w.first); + return uint128(HashLen16(x + v.second, w.second) + y, + HashLen16(x + w.second, y + v.second)); +} + +uint128 CityHash128(const char *s, size_t len) { + return len >= 16 ? + CityHash128WithSeed(s + 16, len - 16, + uint128(Fetch64(s), Fetch64(s + 8) + k0)) : + CityHash128WithSeed(s, len, uint128(k0, k1)); +} + +#ifdef __SSE4_2__ +#include +#include + +// Requires len >= 240. +static void CityHashCrc256Long(const char *s, size_t len, + uint32 seed, uint64 *result) { + uint64 a = Fetch64(s + 56) + k0; + uint64 b = Fetch64(s + 96) + k0; + uint64 c = result[0] = HashLen16(b, len); + uint64 d = result[1] = Fetch64(s + 120) * k0 + len; + uint64 e = Fetch64(s + 184) + seed; + uint64 f = 0; + uint64 g = 0; + uint64 h = c + d; + uint64 x = seed; + uint64 y = 0; + uint64 z = 0; + + // 240 bytes of input per iter. + size_t iters = len / 240; + len -= iters * 240; + do { +#undef CHUNK +#define CHUNK(r) \ + PERMUTE3(x, z, y); \ + b += Fetch64(s); \ + c += Fetch64(s + 8); \ + d += Fetch64(s + 16); \ + e += Fetch64(s + 24); \ + f += Fetch64(s + 32); \ + a += b; \ + h += f; \ + b += c; \ + f += d; \ + g += e; \ + e += z; \ + g += x; \ + z = _mm_crc32_u64(z, b + g); \ + y = _mm_crc32_u64(y, e + h); \ + x = _mm_crc32_u64(x, f + a); \ + e = Rotate(e, r); \ + c += e; \ + s += 40 + + CHUNK(0); PERMUTE3(a, h, c); + CHUNK(33); PERMUTE3(a, h, f); + CHUNK(0); PERMUTE3(b, h, f); + CHUNK(42); PERMUTE3(b, h, d); + CHUNK(0); PERMUTE3(b, h, e); + CHUNK(33); PERMUTE3(a, h, e); + } while (--iters > 0); + + while (len >= 40) { + CHUNK(29); + e ^= Rotate(a, 20); + h += Rotate(b, 30); + g ^= Rotate(c, 40); + f += Rotate(d, 34); + PERMUTE3(c, h, g); + len -= 40; + } + if (len > 0) { + s = s + len - 40; + CHUNK(33); + e ^= Rotate(a, 43); + h += Rotate(b, 42); + g ^= Rotate(c, 41); + f += Rotate(d, 40); + } + result[0] ^= h; + result[1] ^= g; + g += h; + a = HashLen16(a, g + z); + x += y << 32; + b += x; + c = HashLen16(c, z) + h; + d = HashLen16(d, e + result[0]); + g += e; + h += HashLen16(x, f); + e = HashLen16(a, d) + g; + z = HashLen16(b, c) + a; + y = HashLen16(g, h) + c; + result[0] = e + z + y + x; + a = ShiftMix((a + y) * k0) * k0 + b; + result[1] += a + result[0]; + a = ShiftMix(a * k0) * k0 + c; + result[2] = a + result[1]; + a = ShiftMix((a + e) * k0) * k0; + result[3] = a + result[2]; +} + +// Requires len < 240. +static void CityHashCrc256Short(const char *s, size_t len, uint64 *result) { + char buf[240]; + memcpy(buf, s, len); + memset(buf + len, 0, 240 - len); + CityHashCrc256Long(buf, 240, ~static_cast(len), result); +} + +void CityHashCrc256(const char *s, size_t len, uint64 *result) { + if (LIKELY(len >= 240)) { + CityHashCrc256Long(s, len, 0, result); + } else { + CityHashCrc256Short(s, len, result); + } +} + +uint128 CityHashCrc128WithSeed(const char *s, size_t len, uint128 seed) { + if (len <= 900) { + return CityHash128WithSeed(s, len, seed); + } else { + uint64 result[4]; + CityHashCrc256(s, len, result); + uint64 u = Uint128High64(seed) + result[0]; + uint64 v = Uint128Low64(seed) + result[1]; + return uint128(HashLen16(u, v + result[2]), + HashLen16(Rotate(v, 32), u * k0 + result[3])); + } +} + +uint128 CityHashCrc128(const char *s, size_t len) { + if (len <= 900) { + return CityHash128(s, len); + } else { + uint64 result[4]; + CityHashCrc256(s, len, result); + return uint128(result[2], result[3]); + } +} + +#endif diff --git a/source/vsearch_src/cityhash/city.h b/source/vsearch_src/cityhash/city.h new file mode 100644 index 00000000..9ab228d8 --- /dev/null +++ b/source/vsearch_src/cityhash/city.h @@ -0,0 +1,113 @@ +// Copyright (c) 2011 Google, Inc. +// +// Permission is hereby granted, free of charge, to any person obtaining a copy +// of this software and associated documentation files (the "Software"), to deal +// in the Software without restriction, including without limitation the rights +// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +// copies of the Software, and to permit persons to whom the Software is +// furnished to do so, subject to the following conditions: +// +// The above copyright notice and this permission notice shall be included in +// all copies or substantial portions of the Software. +// +// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +// THE SOFTWARE. +// +// CityHash, by Geoff Pike and Jyrki Alakuijala +// +// http://code.google.com/p/cityhash/ +// +// This file provides a few functions for hashing strings. All of them are +// high-quality functions in the sense that they pass standard tests such +// as Austin Appleby's SMHasher. They are also fast. +// +// For 64-bit x86 code, on short strings, we don't know of anything faster than +// CityHash64 that is of comparable quality. We believe our nearest competitor +// is Murmur3. For 64-bit x86 code, CityHash64 is an excellent choice for hash +// tables and most other hashing (excluding cryptography). +// +// For 64-bit x86 code, on long strings, the picture is more complicated. +// On many recent Intel CPUs, such as Nehalem, Westmere, Sandy Bridge, etc., +// CityHashCrc128 appears to be faster than all competitors of comparable +// quality. CityHash128 is also good but not quite as fast. We believe our +// nearest competitor is Bob Jenkins' Spooky. We don't have great data for +// other 64-bit CPUs, but for long strings we know that Spooky is slightly +// faster than CityHash on some relatively recent AMD x86-64 CPUs, for example. +// Note that CityHashCrc128 is declared in citycrc.h. +// +// For 32-bit x86 code, we don't know of anything faster than CityHash32 that +// is of comparable quality. We believe our nearest competitor is Murmur3A. +// (On 64-bit CPUs, it is typically faster to use the other CityHash variants.) +// +// Functions in the CityHash family are not suitable for cryptography. +// +// Please see CityHash's README file for more details on our performance +// measurements and so on. +// +// WARNING: This code has been only lightly tested on big-endian platforms! +// It is known to work well on little-endian platforms that have a small penalty +// for unaligned reads, such as current Intel and AMD moderate-to-high-end CPUs. +// It should work on all 32-bit and 64-bit platforms that allow unaligned reads; +// bug reports are welcome. +// +// By the way, for some hash functions, given strings a and b, the hash +// of a+b is easily derived from the hashes of a and b. This property +// doesn't hold for any hash functions in this file. + +#ifndef CITY_HASH_H_ +#define CITY_HASH_H_ + + +#include // for size_t. +#include +#include + +typedef uint8_t uint8; +typedef uint32_t uint32; +typedef uint64_t uint64; +typedef std::pair uint128; + +inline uint64 Uint128Low64(const uint128& x) { return x.first; } +inline uint64 Uint128High64(const uint128& x) { return x.second; } + +// Hash function for a byte array. +uint64 CityHash64(const char *buf, size_t len); + +// Hash function for a byte array. For convenience, a 64-bit seed is also +// hashed into the result. +uint64 CityHash64WithSeed(const char *buf, size_t len, uint64 seed); + +// Hash function for a byte array. For convenience, two seeds are also +// hashed into the result. +uint64 CityHash64WithSeeds(const char *buf, size_t len, + uint64 seed0, uint64 seed1); + +// Hash function for a byte array. +uint128 CityHash128(const char *s, size_t len); + +// Hash function for a byte array. For convenience, a 128-bit seed is also +// hashed into the result. +uint128 CityHash128WithSeed(const char *s, size_t len, uint128 seed); + +// Hash function for a byte array. Most useful in 32-bit binaries. +uint32 CityHash32(const char *buf, size_t len); + +// Hash 128 input bits down to 64 bits of output. +// This is intended to be a reasonably good hash function. +inline uint64 Hash128to64(const uint128& x) { + // Murmur-inspired hashing. + const uint64 kMul = 0x9ddfea08eb382d69ULL; + uint64 a = (Uint128Low64(x) ^ Uint128High64(x)) * kMul; + a ^= (a >> 47); + uint64 b = (Uint128High64(x) ^ a) * kMul; + b ^= (b >> 47); + b *= kMul; + return b; +} + +#endif // CITY_HASH_H_ diff --git a/source/vsearch_src/cityhash/citycrc.h b/source/vsearch_src/cityhash/citycrc.h new file mode 100644 index 00000000..318e3917 --- /dev/null +++ b/source/vsearch_src/cityhash/citycrc.h @@ -0,0 +1,43 @@ +// Copyright (c) 2011 Google, Inc. +// +// Permission is hereby granted, free of charge, to any person obtaining a copy +// of this software and associated documentation files (the "Software"), to deal +// in the Software without restriction, including without limitation the rights +// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +// copies of the Software, and to permit persons to whom the Software is +// furnished to do so, subject to the following conditions: +// +// The above copyright notice and this permission notice shall be included in +// all copies or substantial portions of the Software. +// +// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +// THE SOFTWARE. +// +// CityHash, by Geoff Pike and Jyrki Alakuijala +// +// This file declares the subset of the CityHash functions that require +// _mm_crc32_u64(). See the CityHash README for details. +// +// Functions in the CityHash family are not suitable for cryptography. + +#ifndef CITY_HASH_CRC_H_ +#define CITY_HASH_CRC_H_ + +#include + +// Hash function for a byte array. +uint128 CityHashCrc128(const char *s, size_t len); + +// Hash function for a byte array. For convenience, a 128-bit seed is also +// hashed into the result. +uint128 CityHashCrc128WithSeed(const char *s, size_t len, uint128 seed); + +// Hash function for a byte array. Sets result[0] ... result[3]. +void CityHashCrc256(const char *s, size_t len, uint64 *result); + +#endif // CITY_HASH_CRC_H_ diff --git a/source/vsearch_src/cluster.cc b/source/vsearch_src/cluster.cc new file mode 100644 index 00000000..659077b2 --- /dev/null +++ b/source/vsearch_src/cluster.cc @@ -0,0 +1,1400 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static int tophits; /* the maximum number of hits to keep */ +static int seqcount; /* number of database sequences */ + +typedef struct clusterinfo_s +{ + int seqno; + int clusterno; + char * cigar; + int strand; +} clusterinfo_t; + +static clusterinfo_t * clusterinfo = 0; +static int clusters = 0; + +static long * cluster_abundance; + +static FILE * fp_centroids = 0; +static FILE * fp_uc = 0; +static FILE * fp_alnout = 0; +static FILE * fp_samout = 0; +static FILE * fp_userout = 0; +static FILE * fp_blast6out = 0; +static FILE * fp_fastapairs = 0; +static FILE * fp_matched = 0; +static FILE * fp_notmatched = 0; + +static pthread_attr_t attr; + +static struct searchinfo_s * si_plus; +static struct searchinfo_s * si_minus; + +typedef struct thread_info_s +{ + pthread_t thread; + pthread_mutex_t mutex; + pthread_cond_t cond; + int work; + int query_first; + int query_count; +} thread_info_t; + +static thread_info_t * ti; + +inline int compare_byclusterno(const void * a, const void * b) +{ + clusterinfo_t * x = (clusterinfo_t *) a; + clusterinfo_t * y = (clusterinfo_t *) b; + if (x->clusterno < y->clusterno) + return -1; + else if (x->clusterno > y->clusterno) + return +1; + else if (x->seqno < y->seqno) + return -1; + else if (x->seqno > y->seqno) + return +1; + else + return 0; +} + +inline int compare_byclusterabundance(const void * a, const void * b) +{ + clusterinfo_t * x = (clusterinfo_t *) a; + clusterinfo_t * y = (clusterinfo_t *) b; + if (cluster_abundance[x->clusterno] > cluster_abundance[y->clusterno]) + return -1; + else if (cluster_abundance[x->clusterno] < cluster_abundance[y->clusterno]) + return +1; + else if (x->clusterno < y->clusterno) + return -1; + else if (x->clusterno > y->clusterno) + return +1; + else if (x->seqno < y->seqno) + return -1; + else if (x->seqno > y->seqno) + return +1; + else + return 0; +} + + +inline void cluster_query_core(struct searchinfo_s * si) +{ + /* the main core function for clustering */ + + /* get sequence etc */ + int seqno = si->query_no; + si->query_head_len = db_getheaderlen(seqno); + si->query_head = db_getheader(seqno); + si->qsize = db_getabundance(seqno); + si->qseqlen = db_getsequencelen(seqno); + if (si->strand) + reverse_complement(si->qsequence, db_getsequence(seqno), si->qseqlen); + else + strcpy(si->qsequence, db_getsequence(seqno)); + + /* perform search */ + search_onequery(si); +} + +inline void cluster_worker(long t) +{ + /* wrapper for the main threaded core function for clustering */ + for (int q = 0; q < ti[t].query_count; q++) + { + cluster_query_core(si_plus + ti[t].query_first + q); + if (opt_strand>1) + cluster_query_core(si_minus + ti[t].query_first + q); + } +} + +void * threads_worker(void * vp) +{ + long t = (long) vp; + thread_info_s * tip = ti + t; + pthread_mutex_lock(&tip->mutex); + /* loop until signalled to quit */ + while (tip->work >= 0) + { + /* wait for work available */ + if (tip->work == 0) + pthread_cond_wait(&tip->cond, &tip->mutex); + if (tip->work > 0) + { + cluster_worker(t); + tip->work = 0; + pthread_cond_signal(&tip->cond); + } + } + pthread_mutex_unlock(&tip->mutex); + return 0; +} + +void threads_wakeup(int queries) +{ + int threads = queries > opt_threads ? opt_threads : queries; + int queries_rest = queries; + int threads_rest = threads; + int query_next = 0; + + /* tell the threads that there is work to do */ + for(int t=0; t < threads; t++) + { + thread_info_t * tip = ti + t; + + tip->query_first = query_next; + tip->query_count = (queries_rest + threads_rest - 1) / threads_rest; + queries_rest -= tip->query_count; + query_next += tip->query_count; + threads_rest--; + + pthread_mutex_lock(&tip->mutex); + tip->work = 1; + pthread_cond_signal(&tip->cond); + pthread_mutex_unlock(&tip->mutex); + } + + /* wait for theads to finish their work */ + for(int t=0; t < threads; t++) + { + thread_info_t * tip = ti + t; + pthread_mutex_lock(&tip->mutex); + while (tip->work > 0) + pthread_cond_wait(&tip->cond, &tip->mutex); + pthread_mutex_unlock(&tip->mutex); + } +} + +void threads_init() +{ + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* allocate memory for thread info */ + ti = (thread_info_t *) xmalloc(opt_threads * sizeof(thread_info_t)); + + /* init and create worker threads */ + for(int t=0; t < opt_threads; t++) + { + thread_info_t * tip = ti + t; + tip->work = 0; + pthread_mutex_init(&tip->mutex, 0); + pthread_cond_init(&tip->cond, 0); + if (pthread_create(&tip->thread, &attr, threads_worker, (void*)(long)t)) + fatal("Cannot create thread"); + } +} + +void threads_exit() +{ + /* finish and clean up worker threads */ + for(int t=0; tmutex); + tip->work = -1; + pthread_cond_signal(&tip->cond); + pthread_mutex_unlock(&tip->mutex); + + /* wait for worker to quit */ + if (pthread_join(tip->thread, 0)) + fatal("Cannot join thread"); + + pthread_cond_destroy(&tip->cond); + pthread_mutex_destroy(&tip->mutex); + } + free(ti); + pthread_attr_destroy(&attr); +} + +void cluster_query_init(struct searchinfo_s * si) +{ + /* initialisation of data for one thread; run once for each thread */ + /* thread specific initialiation */ + + si->qsize = 1; + si->nw = 0; + si->hit_count = 0; + + /* allocate memory for sequence */ + + si->seq_alloc = db_getlongestsequence() + 1; + si->qsequence = (char *) xmalloc(si->seq_alloc); + + si->kmers = (count_t *) xmalloc(seqcount * sizeof(count_t) + 32); + si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); + + si->uh = unique_init(); + si->m = minheap_init(tophits); + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + si->nw = nw_init(); +} + +void cluster_query_exit(struct searchinfo_s * si) +{ + /* clean up after thread execution; called once per thread */ + + search16_exit(si->s); + unique_exit(si->uh); + minheap_exit(si->m); + nw_exit(si->nw); + + if (si->qsequence) + free(si->qsequence); + if (si->hits) + free(si->hits); + if (si->kmers) + free(si->kmers); +} + +void cluster_core_results_hit(struct hit * best, + int clusterno, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ + if (opt_uc) + { + fprintf(fp_uc, "H\t%d\t%d\t%.1f\t%c\t0\t0\t%s\t%s\t%s\n", + clusterno, + qseqlen, + best->id, + best->strand ? '-' : '+', + best->nwalignment, + query_head, + db_getheader(best->target)); + } + + if (fp_alnout) + results_show_alnout(fp_alnout, + best, 1, query_head, + qsequence, qseqlen, qsequence_rc); + + if (fp_samout) + results_show_samout(fp_samout, + best, 1, query_head, + qsequence, qseqlen, qsequence_rc); + + if (fp_fastapairs) + results_show_fastapairs_one(fp_fastapairs, + best, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, best, query_head, + qsequence, qseqlen, qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, best, query_head, + qsequence, qseqlen, qsequence_rc); + + if (opt_matched) + { + fprintf(fp_matched, ">%s\n", query_head); + fprint_fasta_seq_only(fp_matched, qsequence, qseqlen, + opt_fasta_width); + } +} + +void cluster_core_results_nohit(int clusterno, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ + if (opt_uc) + { + fprintf(fp_uc, "S\t%d\t%d\t*\t*\t*\t*\t*\t%s\t*\n", + clusters, qseqlen, query_head); + } + + if (opt_output_no_hits) + { + if (fp_userout) + results_show_userout_one(fp_userout, 0, query_head, + qsequence, qseqlen, qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, 0, query_head, + qsequence, qseqlen, qsequence_rc); + } + + if (opt_notmatched) + { + fprintf(fp_notmatched, ">%s\n", query_head); + fprint_fasta_seq_only(fp_notmatched, qsequence, qseqlen, + opt_fasta_width); + } +} + +int compare_kmersample(const void * a, const void * b) +{ + unsigned int x = * (unsigned int *) a; + unsigned int y = * (unsigned int *) b; + + if (x < y) + return -1; + else if (x > y) + return +1; + else + return 0; +} + +void cluster_core_parallel() +{ + /* create threads and set them in stand-by mode */ + threads_init(); + + const int queries_per_thread = 1; + int max_queries = queries_per_thread * opt_threads; + + /* allocate memory for the search information for each query; + and initialize it */ + si_plus = (struct searchinfo_s *) xmalloc(max_queries * + sizeof(struct searchinfo_s)); + if (opt_strand>1) + si_minus = (struct searchinfo_s *) xmalloc(max_queries * + sizeof(struct searchinfo_s)); + for(int i = 0; i < max_queries; i++) + { + cluster_query_init(si_plus+i); + si_plus[i].strand = 0; + if (opt_strand > 1) + { + cluster_query_init(si_minus+i); + si_minus[i].strand = 1; + } + } + + int * extra_list = (int*) xmalloc(max_queries*sizeof(int)); + + LinearMemoryAligner lma; + long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); + lma.set_parameters(scorematrix, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + int aligncount = 0; + + int lastlength = INT_MAX; + + int seqno = 0; + + long sum_nucleotides = 0; + + progress_init("Clustering", db_getnucleotidecount()); + + while(seqno < seqcount) + { + /* prepare work for the threads in sia[i] */ + /* read query sequences into the search info (si) for each thread */ + + int queries = 0; + + for(int i = 0; i < max_queries; i++) + { + if (seqno < seqcount) + { + int length = db_getsequencelen(seqno); + +#if 1 + if (opt_cluster_smallmem && (!opt_usersort) && (length > lastlength)) + fatal("Sequences not sorted by length and --usersort not specified."); +#endif + + lastlength = length; + + si_plus[i].query_no = seqno; + si_plus[i].strand = 0; + + if (opt_strand > 1) + { + si_minus[i].query_no = seqno; + si_minus[i].strand = 1; + } + + queries++; + seqno++; + } + } + + /* perform work in threads */ + threads_wakeup(queries); + + /* analyse results */ + int extra_count = 0; + + for(int i=0; i < queries; i++) + { + struct searchinfo_s * si_p = si_plus + i; + struct searchinfo_s * si_m = opt_strand > 1 ? si_minus + i : 0; + + for(int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_m : si_p; + + int added = 0; + + if (extra_count) + { + /* Check if there is a hit with one of the non-matching + extra sequences just analysed in this round */ + + for (int j=0; juh, + opt_wordlength, + sic->kmersamplecount, + sic->kmersample); + + /* check if min number of shared kmers is satisfied */ + if ((shared >= MINMATCHSAMPLECOUNT) && + (shared >= si->kmersamplecount / MINMATCHSAMPLEFREQ)) + { + unsigned int length = sic->qseqlen; + + /* Go through the list of hits and see if the current + match is better than any on the list in terms of + more shared kmers (or shorter length if equal + no of kmers). Determine insertion point (x). */ + + int x = si->hit_count; + while ((x > 0) && + ((si->hits[x-1].count < shared) || + ((si->hits[x-1].count == shared) && + (db_getsequencelen(si->hits[x-1].target) + > length)))) + x--; + + if (x < opt_maxaccepts + opt_maxrejects - 1) + { + /* insert into list at position x */ + + /* trash bottom element if no more space */ + if (si->hit_count >= opt_maxaccepts + opt_maxrejects - 1) + { + if (si->hits[si->hit_count-1].aligned) + free(si->hits[si->hit_count-1].nwalignment); + si->hit_count--; + } + + /* move the rest down */ + for(int z = si->hit_count; z > x; z--) + si->hits[z] = si->hits[z-1]; + + /* init new hit */ + struct hit * hit = si->hits + x; + si->hit_count++; + + hit->target = sic->query_no; + hit->strand = si->strand; + hit->count = shared; + hit->accepted = 0; + hit->rejected = 0; + hit->aligned = 0; + hit->weak = 0; + hit->nwalignment = 0; + + added++; + } + } + } + } + + /* now go through the hits and determine final status of each */ + + if (added) + { + si->rejects = 0; + si->accepts = 0; + + /* set all statuses to undetermined */ + + for(int t=0; t< si->hit_count; t++) + { + si->hits[t].accepted = 0; + si->hits[t].rejected = 0; + } + + for(int t = 0; + (si->accepts < opt_maxaccepts) && + (si->rejects < opt_maxrejects) && + (t < si->hit_count); + t++) + { + struct hit * hit = si->hits + t; + + if (! hit->aligned) + { + /* Test accept/reject criteria before alignment */ + unsigned int target = hit->target; + if (search_acceptable_unaligned(si, target)) + { + aligncount++; + + /* perform vectorized alignment */ + /* but only using 1 sequence ! */ + + unsigned int nwtarget = target; + + long nwscore; + long nwalignmentlength; + long nwmatches; + long nwmismatches; + long nwgaps; + char * nwcigar = 0; + + /* short variants for simd aligner */ + CELL snwscore; + unsigned short snwalignmentlength; + unsigned short snwmatches; + unsigned short snwmismatches; + unsigned short snwgaps; + + search16(si->s, + 1, + & nwtarget, + & snwscore, + & snwalignmentlength, + & snwmatches, + & snwmismatches, + & snwgaps, + & nwcigar); + + long tseqlen = db_getsequencelen(target); + + if (snwscore == SHRT_MAX) + { + /* In case the SIMD aligner cannot align, + perform a new alignment with the + linear memory aligner */ + + char * tseq = db_getsequence(target); + + if (nwcigar) + free(nwcigar); + + nwcigar = xstrdup(lma.align(si->qsequence, + tseq, + si->qseqlen, + tseqlen)); + + lma.alignstats(nwcigar, + si->qsequence, + tseq, + & nwscore, + & nwalignmentlength, + & nwmatches, + & nwmismatches, + & nwgaps); + } + else + { + nwscore = snwscore; + nwalignmentlength = snwalignmentlength; + nwmatches = snwmatches; + nwmismatches = snwmismatches; + nwgaps = snwgaps; + } + + + long nwdiff = nwalignmentlength - nwmatches; + long nwindels = nwdiff - nwmismatches; + + hit->aligned = 1; + hit->nwalignment = nwcigar; + hit->nwscore = nwscore; + hit->nwdiff = nwdiff; + hit->nwgaps = nwgaps; + hit->nwindels = nwindels; + hit->nwalignmentlength = nwalignmentlength; + hit->matches = nwmatches; + hit->mismatches = nwmismatches; + + hit->nwid = 100.0 * + (nwalignmentlength - hit->nwdiff) / + nwalignmentlength; + + hit->shortest = MIN(si->qseqlen, tseqlen); + hit->longest = MAX(si->qseqlen, tseqlen); + + /* trim alignment and compute numbers + excluding terminal gaps */ + align_trim(hit); + } + else + { + /* rejection without alignment */ + hit->rejected = 1; + si->rejects++; + } + } + + if (! hit->rejected) + { + /* test accept/reject criteria after alignment */ + if (search_acceptable_aligned(si, hit)) + si->accepts++; + else + si->rejects++; + } + } + + /* delete all undetermined hits */ + + int new_hit_count = si->hit_count; + for(int t=si->hit_count-1; t>=0; t--) + { + struct hit * hit = si->hits + t; + if (!hit->accepted && !hit->rejected) + { + new_hit_count = t; + if (hit->aligned) + free(hit->nwalignment); + } + } + si->hit_count = new_hit_count; + } + } + + /* find best hit */ + struct hit * best = 0; + if (opt_sizeorder) + best = search_findbest2_bysize(si_p, si_m); + else + best = search_findbest2_byid(si_p, si_m); + + int myseqno = si_p->query_no; + + if (best) + { + /* a hit was found, cluster current sequence with hit */ + int target = best->target; + + /* output intermediate results to uc etc */ + cluster_core_results_hit(best, + clusterinfo[target].clusterno, + si_p->query_head, + si_p->qseqlen, + si_p->qsequence, + best->strand ? si_m->qsequence : 0); + + /* update cluster info about this sequence */ + clusterinfo[myseqno].seqno = myseqno; + clusterinfo[myseqno].clusterno = clusterinfo[target].clusterno; + clusterinfo[myseqno].cigar = best->nwalignment; + clusterinfo[myseqno].strand = best->strand; + best->nwalignment = 0; + } + else + { + /* no hit found; add it to the list of extra sequences + that must be considered by the coming queries in this + round */ + extra_list[extra_count++] = i; + + /* update cluster info about this sequence */ + clusterinfo[myseqno].seqno = myseqno; + clusterinfo[myseqno].clusterno = clusters; + clusterinfo[myseqno].cigar = 0; + clusterinfo[myseqno].strand = 0; + + /* add current sequence to database */ + dbindex_addsequence(myseqno); + + /* output intermediate results to uc etc */ + cluster_core_results_nohit(clusters, + si_p->query_head, + si_p->qseqlen, + si_p->qsequence, + 0); + clusters++; + } + + /* free alignments */ + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_m : si_p; + for(int j=0; jhit_count; j++) + if (si->hits[j].aligned) + if (si->hits[j].nwalignment) + free(si->hits[j].nwalignment); + } + + sum_nucleotides += si_p->qseqlen; + } + + progress_update(sum_nucleotides); + } + progress_done(); + +#if 0 + if (!opt_quiet) + fprintf(stderr, "Extra alignments computed: %d\n", aligncount); +#endif + + /* clean up search info */ + for(int i = 0; i < max_queries; i++) + { + cluster_query_exit(si_plus+i); + if (opt_strand > 1) + cluster_query_exit(si_minus+i); + } + + free(extra_list); + + free(si_plus); + if (opt_strand>1) + free(si_minus); + + /* terminate threads and clean up */ + threads_exit(); + + free(scorematrix); +} + +void cluster_core_serial() +{ + struct searchinfo_s si_p[1]; + struct searchinfo_s si_m[1]; + + cluster_query_init(si_p); + if (opt_strand > 1) + cluster_query_init(si_m); + + int lastlength = INT_MAX; + + progress_init("Clustering", seqcount); + for (int seqno=0; seqno lastlength)) + fatal("Sequences not sorted by length and --usersort not specified."); +#endif + + lastlength = length; + + si_p->query_no = seqno; + si_p->strand = 0; + cluster_query_core(si_p); + + if (opt_strand > 1) + { + si_m->query_no = seqno; + si_m->strand = 1; + cluster_query_core(si_m); + } + + struct hit * best = 0; + if (opt_sizeorder) + best = search_findbest2_bysize(si_p, si_m); + else + best = search_findbest2_byid(si_p, si_m); + + if (best) + { + int target = best->target; + cluster_core_results_hit(best, + clusterinfo[target].clusterno, + si_p->query_head, + si_p->qseqlen, + si_p->qsequence, + best->strand ? si_m->qsequence : 0); + clusterinfo[seqno].seqno = seqno; + clusterinfo[seqno].clusterno = clusterinfo[target].clusterno; + clusterinfo[seqno].cigar = best->nwalignment; + clusterinfo[seqno].strand = best->strand; + best->nwalignment = 0; + } + else + { + clusterinfo[seqno].seqno = seqno; + clusterinfo[seqno].clusterno = clusters; + clusterinfo[seqno].cigar = 0; + clusterinfo[seqno].strand = 0; + dbindex_addsequence(seqno); + cluster_core_results_nohit(clusters, + si_p->query_head, + si_p->qseqlen, + si_p->qsequence, + 0); + clusters++; + } + + /* free alignments */ + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_m : si_p; + for(int i=0; ihit_count; i++) + if (si->hits[i].aligned) + if (si->hits[i].nwalignment) + free(si->hits[i].nwalignment); + } + + progress_update(seqno); + } + progress_done(); + + cluster_query_exit(si_p); + if (opt_strand>1) + cluster_query_exit(si_m); +} + + +void cluster(char * dbname, + char * cmdline, + char * progheader) +{ + if (opt_centroids) + { + fp_centroids = fopen(opt_centroids, "w"); + if (!fp_centroids) + fatal("Unable to open centroids file for writing"); + } + + if (opt_uc) + { + fp_uc = fopen(opt_uc, "w"); + if (!fp_uc) + fatal("Unable to open uc file for writing"); + } + + if (opt_alnout) + { + fp_alnout = fopen(opt_alnout, "w"); + if (! fp_alnout) + fatal("Unable to open alignment output file for writing"); + + fprintf(fp_alnout, "%s\n", cmdline); + fprintf(fp_alnout, "%s\n", progheader); + } + + if (opt_samout) + { + fp_samout = fopen(opt_samout, "w"); + if (! fp_samout) + fatal("Unable to open SAM output file for writing"); + } + + if (opt_userout) + { + fp_userout = fopen(opt_userout, "w"); + if (! fp_userout) + fatal("Unable to open user-defined output file for writing"); + } + + if (opt_blast6out) + { + fp_blast6out = fopen(opt_blast6out, "w"); + if (! fp_blast6out) + fatal("Unable to open blast6-like output file for writing"); + } + + if (opt_fastapairs) + { + fp_fastapairs = fopen(opt_fastapairs, "w"); + if (! fp_fastapairs) + fatal("Unable to open fastapairs output file for writing"); + } + + if (opt_matched) + { + fp_matched = fopen(opt_matched, "w"); + if (! fp_matched) + fatal("Unable to open matched output file for writing"); + } + + if (opt_notmatched) + { + fp_notmatched = fopen(opt_notmatched, "w"); + if (! fp_notmatched) + fatal("Unable to open notmatched output file for writing"); + } + + db_read(dbname, opt_qmask != MASK_SOFT); + + results_show_samheader(fp_samout, cmdline, dbname); + + if (opt_qmask == MASK_DUST) + dust_all(); + else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) + hardmask_all(); + + show_rusage(); + + seqcount = db_getsequencecount(); + + if (opt_cluster_fast) + db_sortbylength(); + else if (opt_cluster_size) + db_sortbyabundance(); + + dbindex_prepare(1); + + /* tophits = the maximum number of hits we need to store */ + + if ((opt_maxrejects == 0) || (opt_maxrejects > seqcount)) + opt_maxrejects = seqcount; + + if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) + opt_maxaccepts = seqcount; + + tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; + + if (tophits > seqcount) + tophits = seqcount; + + clusterinfo = (clusterinfo_t *) xmalloc(seqcount * sizeof(clusterinfo_t)); + + if (opt_log) + { + unsigned long slots = 1UL << (opt_wordlength << 1UL); + fprintf(fp_log, "\n"); + fprintf(fp_log, " Alphabet nt\n"); + fprintf(fp_log, " Word width %ld\n", opt_wordlength); + fprintf(fp_log, " Word ones %ld\n", opt_wordlength); + fprintf(fp_log, " Spaced No\n"); + fprintf(fp_log, " Hashed No\n"); + fprintf(fp_log, " Coded No\n"); + fprintf(fp_log, " Stepped No\n"); + fprintf(fp_log, " Slots %lu (%.1fk)\n", slots, slots/1000.0); + fprintf(fp_log, " DBAccel 100%%\n"); + fprintf(fp_log, "\n"); + } + + if (opt_threads == 1) + cluster_core_serial(); + else + cluster_core_parallel(); + + + /* find size and abundance of each cluster and save stats */ + + cluster_abundance = (long *) xmalloc(clusters * sizeof(long)); + int * cluster_size = (int *) xmalloc(clusters * sizeof(int)); + + memset(cluster_abundance, 0, clusters * sizeof(long)); + memset(cluster_size, 0, clusters * sizeof(int)); + + for(int i=0; i abundance_max) + abundance_max = abundance; + + if (abundance == 1) + singletons++; + + int size = cluster_size[z]; + if (size > size_max) + size_max = size; + } + + + /* Sort clusters */ + /* Sequences in same cluster must always come right after each other. */ + /* The centroid sequence must be the first in each cluster. */ + + progress_init("Sorting clusters", clusters); + qsort(clusterinfo, seqcount, sizeof(clusterinfo_t), compare_byclusterno); + progress_done(); + + progress_init("Writing clusters", seqcount); + + /* allocate memory for full file name of the clusters files */ + FILE * fp_clusters = 0; + char * fn_clusters = 0; + if (opt_clusters) + fn_clusters = (char *) xmalloc(strlen(opt_clusters) + 25); + + int lastcluster = -1; + + for(int i=0; i"); + + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp_centroids, seq, len); + else + fprint_seq_digest_md5(fp_centroids, seq, len); + + if (opt_sizeout) + fprintf(fp_centroids, ";size=%u;\n", size); + else + fprintf(fp_centroids, "\n"); + + db_fprint_fasta_seq_only(fp_centroids, seqno); + } + else if (opt_relabel) + { + if (opt_sizeout) + fprintf(fp_centroids, ">%s%d;size=%u;\n", opt_relabel, i+1, size); + else + fprintf(fp_centroids, ">%s%d\n", opt_relabel, i+1); + + db_fprint_fasta_seq_only(fp_centroids, seqno); + } + else + { + if (opt_sizeout) + db_fprint_fasta_with_size(fp_centroids, seqno, size); + else + db_fprint_fasta(fp_centroids, seqno); + } + } + + if (opt_uc) + { + fprintf(fp_uc, "C\t%d\t%ld\t*\t*\t*\t*\t*\t%s\t*\n", + clusterno, + cluster_abundance[clusterno], + db_getheader(seqno)); + } + + if (opt_clusters) + { + /* close previous (except for first time) and open new file */ + if (lastcluster != -1) + fclose(fp_clusters); + + sprintf(fn_clusters, "%s%d", opt_clusters, clusterno); + fp_clusters = fopen(fn_clusters, "w"); + if (!fp_clusters) + fatal("Unable to open clusters file for writing"); + } + + lastcluster = clusterno; + } + + /* performed for all sequences */ + + if (opt_clusters) + { + fprintf(fp_clusters, ">%s\n", db_getheader(seqno)); + fprint_fasta_seq_only(fp_clusters, + db_getsequence(seqno), + db_getsequencelen(seqno), + opt_fasta_width); + } + + progress_update(i); + } + + if (lastcluster != -1) + { + /* performed with the last sequence */ + if (opt_clusters) + { + fclose(fp_clusters); + if (fn_clusters) + free(fn_clusters); + } + } + + progress_done(); + + if (!opt_quiet) + { + fprintf(stderr, + "Clusters: %d Size min %ld, max %ld, avg %.1f\n", + clusters, + abundance_min, + abundance_max, + 1.0 * seqcount / clusters); + fprintf(stderr, + "Singletons: %d, %.1f%% of seqs, %.1f%% of clusters\n", + singletons, + 100.0 * singletons / seqcount, + 100.0 * singletons / clusters); + } + + if (opt_log) + { + fprintf(fp_log, + "Clusters: %d Size min %ld, max %ld, avg %.1f\n", + clusters, + abundance_min, + abundance_max, + 1.0 * seqcount / clusters); + fprintf(fp_log, + "Singletons: %d, %.1f%% of seqs, %.1f%% of clusters\n", + singletons, + 100.0 * singletons / seqcount, + 100.0 * singletons / clusters); + fprintf(fp_log, "\n"); + } + + if (opt_clusterout_sort) + { + /* Optionally sort clusters by abundance */ + progress_init("Sorting clusters by abundance", clusters); + qsort(clusterinfo, seqcount, sizeof(clusterinfo_t), + compare_byclusterabundance); + progress_done(); + } + + if (opt_msaout || opt_consout || opt_profile) + { + int msa_target_count = 0; + struct msa_target_s * msa_target_list = + (struct msa_target_s *) xmalloc(sizeof(struct msa_target_s) * size_max); + progress_init("Multiple alignments", seqcount); + + FILE * fp_msaout = 0; + FILE * fp_consout = 0; + FILE * fp_profile = 0; + + if (opt_msaout) + if (!(fp_msaout = fopen(opt_msaout, "w"))) + fatal("Unable to open msaout file"); + + if (opt_consout) + if (!(fp_consout = fopen(opt_consout, "w"))) + fatal("Unable to open consout file"); + + if (opt_profile) + if (!(fp_profile = fopen(opt_profile, "w"))) + fatal("Unable to open profile file"); + + lastcluster = -1; + + abundance_t * abundance_handle = abundance_init(); + + for(int i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void cluster_smallmem(char * cmdline, char * progheader); +void cluster_fast(char * cmdline, char * progheader); +void cluster_size(char * cmdline, char * progheader); diff --git a/source/vsearch_src/cpu.cc b/source/vsearch_src/cpu.cc new file mode 100644 index 00000000..1f6dd9a1 --- /dev/null +++ b/source/vsearch_src/cpu.cc @@ -0,0 +1,130 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* This file contains code dependent on special cpu features (e.g. ssse3) */ +/* The file will be compiled several times with different cpu options */ + +#ifdef SSSE3 +void increment_counters_from_bitmap_ssse3(unsigned short * counters, + unsigned char * bitmap, + unsigned int totalbits) +#else +void increment_counters_from_bitmap_sse2(unsigned short * counters, + unsigned char * bitmap, + unsigned int totalbits) +#endif +{ + /* + Increment selected elements in an array of 16 bit counters. + The counters to increment are indicated by 1's in the bitmap. + + We read 16 bytes from the bitmap, but use only two bytes (16 bits). + Convert these 16 bits into 16 bytes with either 0x00 or 0xFF. + Extend these to 16 words (32 bytes) with either 0x0000 or 0xFFFF. + Use these values to increment 16 words in an array by subtraction. + + See article below for some hints: + http://stackoverflow.com/questions/21622212/ + how-to-perform-the-inverse-of-mm256-movemask-epi8-vpmovmskb + + Because the efficient PSHUFB instruction is a SSSE3 instruction + lacking in many AMD cpus, we provide slightly slower alternative + SSE2 code. + */ + +#ifdef SSSE3 + const __m128i c1 = + _mm_set_epi32(0x01010101, 0x01010101, 0x00000000, 0x00000000); +#endif + + const __m128i c2 = + _mm_set_epi32(0x7fbfdfef, 0xf7fbfdfe, 0x7fbfdfef, 0xf7fbfdfe); + + const __m128i c3 = + _mm_set_epi32(0xffffffff, 0xffffffff, 0xffffffff, 0xffffffff); + + unsigned short * p = (unsigned short *)(bitmap); + __m128i * q = (__m128i *)(counters); + int r = (totalbits + 15) / 16; + + for(int j=0; j, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void increment_counters_from_bitmap_sse2(unsigned short * counters, + unsigned char * bitmap, + unsigned int totalbits); + +void increment_counters_from_bitmap_ssse3(unsigned short * counters, + unsigned char * bitmap, + unsigned int totalbits); diff --git a/source/vsearch_src/db.cc b/source/vsearch_src/db.cc new file mode 100644 index 00000000..46d88483 --- /dev/null +++ b/source/vsearch_src/db.cc @@ -0,0 +1,446 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +#define MEMCHUNK 16777216 + +static fasta_handle h; +static unsigned long sequences = 0; +static unsigned long nucleotides = 0; +static unsigned long longest; +static unsigned long shortest; +static unsigned long longestheader; + +seqinfo_t * seqindex; +char * datap; +abundance_t * db_abundance; + +void db_read(const char * filename, int upcase) +{ + /* compile regexp for abundance pattern */ + + db_abundance = abundance_init(); + + h = fasta_open(filename); + + long filesize = fasta_get_size(h); + + char * prompt; + if (asprintf(& prompt, "Reading file %s", filename) == -1) + fatal("Out of memory"); + + progress_init(prompt, filesize); + + longest = 0; + shortest = LONG_MAX; + longestheader = 0; + sequences = 0; + nucleotides = 0; + + long discarded_short = 0; + long discarded_long = 0; + + /* allocate space for data */ + unsigned long dataalloc = 0; + datap = 0; + unsigned long datalen = 0; + + /* allocate space for index */ + size_t seqindex_alloc = 0; + seqindex = 0; + + while(fasta_next(h, + ! opt_notrunclabels, + upcase ? chrmap_upcase : chrmap_no_change)) + { + size_t headerlength = fasta_get_header_length(h); + size_t sequencelength = fasta_get_sequence_length(h); + + unsigned int abundance = abundance_get(db_abundance, + fasta_get_header(h)); + + if (sequencelength < (size_t)opt_minseqlength) + { + discarded_short++; + } + else if (sequencelength > (size_t)opt_maxseqlength) + { + discarded_long++; + } + else + { + /* grow space for data, if necessary */ + size_t dataalloc_old = dataalloc; + while (datalen + headerlength + sequencelength + 2 > dataalloc) + dataalloc += MEMCHUNK; + if (dataalloc > dataalloc_old) + datap = (char *) xrealloc(datap, dataalloc); + + /* store the header */ + size_t header_p = datalen; + memcpy(datap + header_p, fasta_get_header(h), headerlength + 1); + datalen += headerlength + 1; + + /* store sequence */ + size_t sequence_p = datalen; + memcpy(datap+sequence_p, fasta_get_sequence(h), sequencelength + 1); + datalen += sequencelength + 1; + + /* grow space for index, if necessary */ + size_t seqindex_alloc_old = seqindex_alloc; + while ((sequences + 1) * sizeof(seqinfo_t) > seqindex_alloc) + seqindex_alloc += MEMCHUNK; + if (seqindex_alloc > seqindex_alloc_old) + seqindex = (seqinfo_t *) xrealloc(seqindex, seqindex_alloc); + + /* update index */ + seqinfo_t * seqindex_p = seqindex + sequences; + seqindex_p->headerlen = headerlength; + seqindex_p->header_p = header_p; + seqindex_p->seqlen = sequencelength; + seqindex_p->seq_p = sequence_p; + seqindex_p->size = abundance; + + /* update statistics */ + sequences++; + nucleotides += sequencelength; + if (sequencelength > longest) + longest = sequencelength; + if (sequencelength < shortest) + shortest = sequencelength; + if (headerlength > longestheader) + longestheader = headerlength; + } + progress_update(fasta_get_position(h)); + } + + progress_done(); + free(prompt); + fasta_close(h); + + if (!opt_quiet) + { + if (sequences > 0) + fprintf(stderr, + "%'lu nt in %'lu seqs, min %'lu, max %'lu, avg %'.0f\n", + db_getnucleotidecount(), + db_getsequencecount(), + db_getshortestsequence(), + db_getlongestsequence(), + db_getnucleotidecount() * 1.0 / db_getsequencecount()); + else + fprintf(stderr, + "%'lu nt in %'lu seqs\n", + db_getnucleotidecount(), + db_getsequencecount()); + } + + if (opt_log) + { + if (sequences > 0) + fprintf(fp_log, + "%'lu nt in %'lu seqs, min %'lu, max %'lu, avg %'.0f\n\n", + db_getnucleotidecount(), + db_getsequencecount(), + db_getshortestsequence(), + db_getlongestsequence(), + db_getnucleotidecount() * 1.0 / db_getsequencecount()); + else + fprintf(fp_log, + "%'lu nt in %'lu seqs\n\n", + db_getnucleotidecount(), + db_getsequencecount()); + } + + /* Warn about discarded sequences */ + + if (discarded_short) + { + fprintf(stderr, + "WARNING: %ld sequences shorter than %ld nucleotides discarded.\n", + discarded_short, opt_minseqlength); + + if (opt_log) + fprintf(fp_log, + "WARNING: %ld sequences shorter than %ld nucleotides discarded.\n\n", + discarded_short, opt_minseqlength); + } + + if (discarded_long) + { + fprintf(stderr, + "WARNING: %ld sequences longer than %ld nucleotides discarded.\n", + discarded_long, opt_maxseqlength); + + if (opt_log) + fprintf(fp_log, + "WARNING: %ld sequences longer than %ld nucleotides discarded.\n\n", + discarded_long, opt_maxseqlength); + } + + show_rusage(); + +} + +unsigned long db_getsequencecount() +{ + return sequences; +} + +unsigned long db_getnucleotidecount() +{ + return nucleotides; +} + +unsigned long db_getlongestheader() +{ + return longestheader; +} + +unsigned long db_getlongestsequence() +{ + return longest; +} + +unsigned long db_getshortestsequence() +{ + return shortest; +} + +void db_free() +{ + abundance_exit(db_abundance); + if (datap) + free(datap); + if (seqindex) + free(seqindex); +} + +void db_fprint_fasta_seq_only(FILE * fp, unsigned long seqno) +{ + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); +} + +void db_fprint_fasta(FILE * fp, unsigned long seqno) +{ + char * hdr = db_getheader(seqno); + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + + fprint_fasta_hdr_only(fp, hdr); + fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); +} + +void db_fprint_fasta_with_size(FILE * fp, unsigned long seqno, unsigned long size) +{ + char * hdr = db_getheader(seqno); + int hdrlen = db_getheaderlen(seqno); + + abundance_fprint_header_with_size(db_abundance, + fp, + hdr, + hdrlen, + size); + + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + + fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); +} + +void db_fprint_fasta_strip_size(FILE * fp, unsigned long seqno) +{ + /* write FASTA but remove abundance information, as with --xsize option */ + + char * hdr = db_getheader(seqno); + int hdrlen = db_getheaderlen(seqno); + + abundance_fprint_header_strip_size(db_abundance, + fp, + hdr, + hdrlen); + + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + + fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); +} + +int compare_bylength(const void * a, const void * b) +{ + seqinfo_t * x = (seqinfo_t *) a; + seqinfo_t * y = (seqinfo_t *) b; + + /* longest first, then by abundance, then by label, otherwise keep order */ + + if (x->seqlen < y->seqlen) + return +1; + else if (x->seqlen > y->seqlen) + return -1; + else + { + if (x->size < y->size) + return +1; + else if (x->size > y->size) + return -1; + else + { + int r = strcmp(datap + x->header_p, datap + y->header_p); + if (r != 0) + return r; + else + { + if (x < y) + return -1; + else if (x > y) + return +1; + else + return 0; + } + } + } +} + +int compare_bylength_shortest_first(const void * a, const void * b) +{ + seqinfo_t * x = (seqinfo_t *) a; + seqinfo_t * y = (seqinfo_t *) b; + + /* shortest first, then by abundance, then by label, otherwise keep order */ + + if (x->seqlen < y->seqlen) + return -1; + else if (x->seqlen > y->seqlen) + return +1; + else + { + if (x->size < y->size) + return +1; + else if (x->size > y->size) + return -1; + else + { + int r = strcmp(datap + x->header_p, datap + y->header_p); + if (r != 0) + return r; + else + { + if (x < y) + return -1; + else if (x > y) + return +1; + else + return 0; + } + } + } +} + +inline int compare_byabundance(const void * a, const void * b) +{ + seqinfo_t * x = (seqinfo_t *) a; + seqinfo_t * y = (seqinfo_t *) b; + + /* most abundant first, then by label, otherwise keep order */ + + if (x->size > y->size) + return -1; + else if (x->size < y->size) + return +1; + else + { + int r = strcmp(datap + x->header_p, datap + y->header_p); + if (r != 0) + return r; + else + { + if (x < y) + return -1; + else if (x > y) + return +1; + else + return 0; + } + } +} + +void db_sortbylength() +{ + progress_init("Sorting by length", 100); + qsort(seqindex, sequences, sizeof(seqinfo_t), compare_bylength); + progress_done(); +} + +void db_sortbylength_shortest_first() +{ + progress_init("Sorting by length", 100); + qsort(seqindex, sequences, sizeof(seqinfo_t), compare_bylength_shortest_first); + progress_done(); +} + +void db_sortbyabundance() +{ + progress_init("Sorting by abundance", 100); + qsort(seqindex, sequences, sizeof(seqinfo_t), compare_byabundance); + progress_done(); +} diff --git a/source/vsearch_src/db.h b/source/vsearch_src/db.h new file mode 100644 index 00000000..758af205 --- /dev/null +++ b/source/vsearch_src/db.h @@ -0,0 +1,125 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +struct seqinfo_s +{ + size_t header_p; + size_t seq_p; + unsigned int headerlen; + unsigned int seqlen; + unsigned int size; +}; + +typedef struct seqinfo_s seqinfo_t; + +extern char * datap; +extern seqinfo_t * seqindex; +extern abundance_t * db_abundance; + +inline char * db_getheader(unsigned long seqno) +{ + return datap + seqindex[seqno].header_p; +} + +inline char * db_getsequence(unsigned long seqno) +{ + return datap + seqindex[seqno].seq_p; +} + +inline unsigned long db_getabundance(unsigned long seqno) +{ + return seqindex[seqno].size; +} + +inline unsigned long db_getsequencelen(unsigned long seqno) +{ + return seqindex[seqno].seqlen; +} + +inline unsigned long db_getheaderlen(unsigned long seqno) +{ + return seqindex[seqno].headerlen; +} + +void db_read(const char * filename, int upcase); +void db_free(); + +unsigned long db_getsequencecount(); +unsigned long db_getnucleotidecount(); +unsigned long db_getlongestheader(); +unsigned long db_getlongestsequence(); +unsigned long db_getshortestsequence(); + +void db_fprint_fasta(FILE * fp, unsigned long seqno); + +void db_fprint_fasta_seq_only(FILE * fp, unsigned long seqno); + +void db_fprint_fasta_with_size(FILE * fp, unsigned long seqno, unsigned long size); + +void db_fprint_fasta_strip_size(FILE * fp, unsigned long seqno); + + +/* Note: the sorting functions below must be called after db_read, + but before dbindex_prepare */ + +void db_sortbylength(); +void db_sortbylength_shortest_first(); + +void db_sortbyabundance(); diff --git a/source/vsearch_src/dbindex.cc b/source/vsearch_src/dbindex.cc new file mode 100644 index 00000000..636eb259 --- /dev/null +++ b/source/vsearch_src/dbindex.cc @@ -0,0 +1,217 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +unsigned int * kmercount; +unsigned long * kmerhash; +unsigned int * kmerindex; +bitmap_t * * kmerbitmap; +unsigned int * dbindex_map; + +static unsigned int kmerhashsize; +static unsigned long kmerindexsize; +unsigned int dbindex_count; + +static uhandle_s * dbindex_uh; + +#define BITMAP_THRESHOLD 8 + +static unsigned int bitmap_mincount; + +void fprint_kmer(FILE * f, unsigned int kk, unsigned long kmer) +{ + unsigned long x = kmer; + for(unsigned int i=0; i> (2*(kk-i-1))) & 3]); +} + +void dbindex_addsequence(unsigned int seqno) +{ +#if 0 + printf("Adding seqno %d as index element no %d\n", seqno, dbindex_count); +#endif + + unsigned int uniquecount; + unsigned int * uniquelist; + unique_count(dbindex_uh, opt_wordlength, + db_getsequencelen(seqno), db_getsequence(seqno), + & uniquecount, & uniquelist); + dbindex_map[dbindex_count] = seqno; + for(unsigned int i=0; i= bitmap_mincount) + { + kmerbitmap[i] = bitmap_init(seqcount+127); // pad for xmm + bitmap_reset_all(kmerbitmap[i]); + } + else + sum += kmercount[i]; + } + kmerindexsize = sum; + kmerhash[kmerhashsize] = sum; + +#if 0 + if (!opt_quiet) + fprintf(stderr, "Unique %ld-mers: %u\n", opt_wordlength, kmerindexsize); +#endif + + /* reset counts */ + memset(kmercount, 0, kmerhashsize * sizeof(unsigned int)); + + /* allocate space for actual data */ + kmerindex = (unsigned int *) xmalloc(kmerindexsize * sizeof(unsigned int)); + + /* allocate space for mapping from indexno to seqno */ + dbindex_map = (unsigned int *) xmalloc(seqcount * sizeof(unsigned int)); + + dbindex_count = 0; + + show_rusage(); +} + +void dbindex_free() +{ + free(kmerhash); + free(kmerindex); + free(kmercount); + free(dbindex_map); + + for(unsigned int kmer=0; kmer, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +extern unsigned int * kmercount; /* number of matching seqnos for each kmer */ +extern unsigned long * kmerhash; /* index into the list below for each kmer */ +extern unsigned int * kmerindex; /* the list of matching seqnos for kmers */ +extern bitmap_t * * kmerbitmap; +extern unsigned int * dbindex_map; +extern unsigned int dbindex_count; + +void fprint_kmer(FILE * f, unsigned int k, unsigned long kmer); + +void dbindex_prepare(int use_bitmap); +void dbindex_addallsequences(); +void dbindex_addsequence(unsigned int seqno); +void dbindex_free(); + +inline unsigned char * dbindex_getbitmap(unsigned int kmer) +{ + if (kmerbitmap[kmer]) + return kmerbitmap[kmer]->bitmap; + else + return 0; +} + +inline unsigned int dbindex_getmatchcount(unsigned int kmer) +{ + return kmercount[kmer]; +} + +inline unsigned int * dbindex_getmatchlist(unsigned int kmer) +{ + return kmerindex + kmerhash[kmer]; +} + +inline unsigned int dbindex_getmapping(unsigned int index) +{ + return dbindex_map[index]; +} + +inline unsigned int dbindex_getcount() +{ + return dbindex_count; +} diff --git a/source/vsearch_src/derep.cc b/source/vsearch_src/derep.cc new file mode 100644 index 00000000..7dd4d57c --- /dev/null +++ b/source/vsearch_src/derep.cc @@ -0,0 +1,829 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +//#define BITMAP + +#define HASH hash_cityhash64 + +struct bucket +{ + unsigned long hash; + unsigned int seqno_first; + unsigned int seqno_last; + unsigned int size; + bool deleted; +}; + +#ifdef BITMAP +unsigned char * hash_occupied = 0; + +void hash_set_occupied(unsigned long hashindex) +{ + hash_occupied[(hashindex) >> 3] |= 1 << (hashindex & 7); +} + +int hash_is_occupied(unsigned long hashindex) +{ + return hash_occupied[(hashindex) >> 3] & (1 << (hashindex & 7)); +} +#endif + +int derep_compare(const void * a, const void * b) +{ + struct bucket * x = (struct bucket *) a; + struct bucket * y = (struct bucket *) b; + + /* highest abundance first, then by label, otherwise keep order */ + + if (x->deleted > y->deleted) + return +1; + else if (x->deleted < y->deleted) + return -1; + else + { + if (x->size < y->size) + return +1; + else if (x->size > y->size) + return -1; + else + { + int r = strcmp(db_getheader(x->seqno_first), + db_getheader(y->seqno_first)); + if (r != 0) + return r; + else + { + if (x->seqno_first < y->seqno_first) + return -1; + else if (x->seqno_first > y->seqno_first) + return +1; + else + return 0; + } + } + } +} + +int seqcmp(char * a, char * b, int n) +{ + char * p = a; + char * q = b; + + if (n <= 0) + return 0; + + while ((n-- > 0) && (chrmap_4bit[(int)(*p)] == chrmap_4bit[(int)(*q)])) + { + if ((n == 0) || (*p == 0) || (*q == 0)) + break; + p++; + q++; + } + + return chrmap_4bit[(int)(*p)] - chrmap_4bit[(int)(*q)]; +} + +void derep_fulllength() +{ + FILE * fp_output = 0; + FILE * fp_uc = 0; + + if (opt_output) + { + fp_output = fopen(opt_output, "w"); + if (!fp_output) + fatal("Unable to open output file for writing"); + } + + if (opt_uc) + { + fp_uc = fopen(opt_uc, "w"); + if (!fp_uc) + fatal("Unable to open output (uc) file for writing"); + } + + db_read(opt_derep_fulllength, 0); + + show_rusage(); + + long dbsequencecount = db_getsequencecount(); + + /* adjust size of hash table for 2/3 fill rate */ + + long hashtablesize = 1; + int hash_shift = 0; + while (3 * dbsequencecount > 2 * hashtablesize) + { + hashtablesize <<= 1; + hash_shift++; + } + int hash_mask = hashtablesize - 1; + + struct bucket * hashtable = + (struct bucket *) xmalloc(sizeof(bucket) * hashtablesize); + + memset(hashtable, 0, sizeof(bucket) * hashtablesize); + +#ifdef BITMAP + hash_occupied = + (unsigned char *) xmalloc(hashtablesize / 8); + memset(hash_occupied, 0, hashtablesize / 8); +#endif + + long clusters = 0; + long sumsize = 0; + unsigned long maxsize = 0; + double median = 0.0; + double average = 0.0; + + /* alloc and init table of links to other sequences in cluster */ + + unsigned int * nextseqtab = (unsigned int*) xmalloc(sizeof(unsigned int) * dbsequencecount); + memset(nextseqtab, 0, sizeof(unsigned int) * dbsequencecount); + + char * seq_up = (char*) xmalloc(db_getlongestsequence() + 1); + char * rc_seq_up = (char*) xmalloc(db_getlongestsequence() + 1); + + progress_init("Dereplicating", dbsequencecount); + for(long i=0; i 1) + reverse_complement(rc_seq_up, seq_up, seqlen); + + /* + Find free bucket or bucket for identical sequence. + Make sure sequences are exactly identical + in case of any hash collision. + With 64-bit hashes, there is about 50% chance of a + collision when the number of sequences is about 5e9. + */ + + unsigned long hash = HASH(seq_up, seqlen); + unsigned long j = hash & hash_mask; + struct bucket * bp = hashtable + j; + + while ( +#ifdef BITMAP + (hash_is_occupied(j)) +#else + (bp->size) +#endif + && + ((bp->hash != hash) || + (seqlen != db_getsequencelen(bp->seqno_first)) || + (seqcmp(seq_up, db_getsequence(bp->seqno_first), seqlen)))) + { + bp++; + j++; + if (bp >= hashtable + hashtablesize) + { + bp = hashtable; + j = 0; + } + } + + if ((opt_strand > 1) && !bp->size) + { + /* no match on plus strand */ + /* check minus strand as well */ + + unsigned long rc_hash = HASH(rc_seq_up, seqlen); + struct bucket * rc_bp = hashtable + rc_hash % hashtablesize; + unsigned long k = rc_hash & hash_mask; + + while ( +#ifdef BITMAP + (hash_is_occupied(j)) +#else + (rc_bp->size) +#endif + && + ((rc_bp->hash != rc_hash) || + (seqlen != db_getsequencelen(rc_bp->seqno_first)) || + (seqcmp(rc_seq_up, + db_getsequence(rc_bp->seqno_first), + seqlen)))) + { + rc_bp++; + k++; + if (rc_bp >= hashtable + hashtablesize) + { + rc_bp = hashtable; + k++; + } + } + + if (rc_bp->size) + { + bp = rc_bp; + j = k; + } + } + + long ab = opt_sizein ? db_getabundance(i) : 1; + sumsize += ab; + + if (bp->size) + { + /* at least one identical sequence already */ + bp->size += ab; + unsigned int last = bp->seqno_last; + nextseqtab[last] = i; + bp->seqno_last = i; + } + else + { + /* no identical sequences yet */ + bp->size = ab; + bp->hash = hash; + bp->seqno_first = i; + bp->seqno_last = i; + clusters++; + } + + if (bp->size > maxsize) + maxsize = bp->size; + +#ifdef BITMAP + hash_set_occupied(j); +#endif + + progress_update(i); + } + progress_done(); + + free(seq_up); + free(rc_seq_up); + + show_rusage(); + + + progress_init("Sorting", 1); + qsort(hashtable, hashtablesize, sizeof(bucket), derep_compare); + progress_done(); + + + if (clusters > 0) + { + if (clusters % 2) + median = hashtable[(clusters-1)/2].size; + else + median = (hashtable[(clusters/2)-1].size + + hashtable[clusters/2].size) / 2.0; + } + + average = 1.0 * sumsize / clusters; + + if (!opt_quiet) + fprintf(stderr, + "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n", + clusters, average, median, maxsize); + + if (opt_log) + fprintf(fp_log, + "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n\n", + clusters, average, median, maxsize); + + show_rusage(); + + long selected = 0; + + if (opt_output) + progress_init("Writing output file", clusters); + + for (long i=0; isize; + if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) + { + if (opt_output) + { + if (opt_relabel_sha1 || opt_relabel_md5) + { + fprintf(fp_output, ">"); + char * seq = db_getsequence(bp->seqno_first); + unsigned int len = db_getsequencelen(bp->seqno_first); + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp_output, seq, len); + else + fprint_seq_digest_md5(fp_output, seq, len); + if (opt_sizeout) + fprintf(fp_output, ";size=%u;\n", bp->size); + else + fprintf(fp_output, "\n"); + db_fprint_fasta_seq_only(fp_output, bp->seqno_first); + } + else if (opt_relabel) + { + if (opt_sizeout) + fprintf(fp_output, ">%s%ld;size=%u;\n", opt_relabel, i+1, + bp->size); + else + fprintf(fp_output, ">%s%ld\n", opt_relabel, i+1); + db_fprint_fasta_seq_only(fp_output, bp->seqno_first); + } + else + { + if (opt_sizeout) + db_fprint_fasta_with_size(fp_output, + bp->seqno_first, bp->size); + else + db_fprint_fasta(fp_output, + bp->seqno_first); + } + } + selected++; + if (selected == opt_topn) + break; + } + if (opt_output) + progress_update(i); + } + + if (opt_output) + { + progress_done(); + fclose(fp_output); + } + + show_rusage(); + + if (opt_uc) + { + progress_init("Writing uc file, first part", clusters); + for (long i=0; iseqno_first); + long len = db_getsequencelen(bp->seqno_first); + + fprintf(fp_uc, "S\t%ld\t%ld\t*\t*\t*\t*\t*\t%s\t*\n", + i, len, h); + + for (unsigned long next = nextseqtab[bp->seqno_first]; + next; + next = nextseqtab[next]) + fprintf(fp_uc, + "H\t%ld\t%ld\t%.1f\t*\t0\t0\t*\t%s\t%s\n", + i, len, 100.0, db_getheader(next), h); + + progress_update(i); + } + progress_done(); + show_rusage(); + + progress_init("Writing uc file, second part", clusters); + for (long i=0; isize, db_getheader(bp->seqno_first)); + progress_update(i); + } + fclose(fp_uc); + progress_done(); + show_rusage(); + } + + if (selected < clusters) + { + if (!opt_quiet) + fprintf(stderr, + "%ld uniques written, %ld clusters discarded (%.1f%%)\n", + selected, clusters - selected, + 100.0 * (clusters - selected) / clusters); + + if (opt_log) + fprintf(fp_log, + "%ld uniques written, %ld clusters discarded (%.1f%%)\n\n", + selected, clusters - selected, + 100.0 * (clusters - selected) / clusters); + } + + free(nextseqtab); + free(hashtable); + db_free(); +} + + +void derep_prefix() +{ + FILE * fp_output = 0; + FILE * fp_uc = 0; + + if (opt_output) + { + fp_output = fopen(opt_output, "w"); + if (!fp_output) + fatal("Unable to open output file for writing"); + } + + if (opt_uc) + { + fp_uc = fopen(opt_uc, "w"); + if (!fp_uc) + fatal("Unable to open output (uc) file for writing"); + } + + db_read(opt_derep_prefix, 0); + + db_sortbylength_shortest_first(); + + show_rusage(); + + long dbsequencecount = db_getsequencecount(); + + /* adjust size of hash table for 2/3 fill rate */ + + long hashtablesize = 1; + int hash_shift = 0; + while (3 * dbsequencecount > 2 * hashtablesize) + { + hashtablesize <<= 1; + hash_shift++; + } + int hash_mask = hashtablesize - 1; + + struct bucket * hashtable = + (struct bucket *) xmalloc(sizeof(bucket) * hashtablesize); + + memset(hashtable, 0, sizeof(bucket) * hashtablesize); + + long clusters = 0; + long sumsize = 0; + unsigned long maxsize = 0; + double median = 0.0; + double average = 0.0; + + /* alloc and init table of links to other sequences in cluster */ + + unsigned int * nextseqtab = (unsigned int*) xmalloc(sizeof(unsigned int) * dbsequencecount); + memset(nextseqtab, 0, sizeof(unsigned int) * dbsequencecount); + + char * seq_up = (char*) xmalloc(db_getlongestsequence() + 1); + + /* make table of hash values of prefixes */ + + unsigned int len_longest = db_getlongestsequence(); + unsigned int len_shortest = db_getshortestsequence(); + unsigned long * prefix_hashes = (unsigned long *) + xmalloc(sizeof(unsigned long) * (len_longest+1)); + + progress_init("Dereplicating", dbsequencecount); + for(long i=0; isize) && + ((bp->deleted) || + (bp->hash != hash) || + (prefix_len != db_getsequencelen(bp->seqno_first)) || + (seqcmp(seq_up, db_getsequence(bp->seqno_first), prefix_len)))) + { + bp++; + if (bp >= hashtable + hashtablesize) + bp = hashtable; + } + + /* at this point, bp points either to (1) a free empty hash bucket, or + (2) a bucket with an exact match. */ + + unsigned long orig_hash = hash; + struct bucket * orig_bp = bp; + + if (bp->size) + { + /* exact match */ + bp->size += ab; + unsigned int last = bp->seqno_last; + nextseqtab[last] = i; + bp->seqno_last = i; + + if (bp->size > maxsize) + maxsize = bp->size; + } + else + { + /* look for prefix match */ + + while((! bp->size) && (prefix_len-- >= len_shortest)) + { + hash = prefix_hashes[prefix_len-1]; + bp = hashtable + (hash & hash_mask); + + while ((bp->size) && + ((bp->deleted) || + (bp->hash != hash) || + (prefix_len != db_getsequencelen(bp->seqno_first)) || + (seqcmp(seq_up, + db_getsequence(bp->seqno_first), + prefix_len)))) + { + bp++; + if (bp >= hashtable + hashtablesize) + bp = hashtable; + } + } + + if ((bp->size) && (prefix_len >= len_shortest)) + { + /* prefix match */ + + /* get necessary info, then delete prefix from hash */ + unsigned int first = bp->seqno_first; + unsigned int last = bp->seqno_last; + unsigned int size = bp->size; + bp->deleted = true; + + /* create new hash entry */ + bp = orig_bp; + bp->size = size + ab; + bp->hash = orig_hash; + bp->seqno_first = i; + nextseqtab[i] = first; + bp->seqno_last = last; + + if (bp->size > maxsize) + maxsize = bp->size; + } + else + { + /* no match */ + orig_bp->size = ab; + orig_bp->hash = orig_hash; + orig_bp->seqno_first = i; + orig_bp->seqno_last = i; + + if (ab > maxsize) + maxsize = ab; + clusters++; + } + } + + progress_update(i); + } + progress_done(); + + free(prefix_hashes); + + free(seq_up); + + show_rusage(); + + progress_init("Sorting", 1); + qsort(hashtable, hashtablesize, sizeof(bucket), derep_compare); + progress_done(); + + if (clusters > 0) + { + if (clusters % 2) + median = hashtable[(clusters-1)/2].size; + else + median = (hashtable[(clusters/2)-1].size + + hashtable[clusters/2].size) / 2.0; + } + + average = 1.0 * sumsize / clusters; + + if (!opt_quiet) + fprintf(stderr, + "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n", + clusters, average, median, maxsize); + + if (opt_log) + fprintf(fp_log, + "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n\n", + clusters, average, median, maxsize); + + show_rusage(); + + long selected = 0; + + if (opt_output) + progress_init("Writing output file", clusters); + + for (long i=0; isize; + if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) + { + if (opt_output) + { + if (opt_relabel_sha1 || opt_relabel_md5) + { + fprintf(fp_output, ">"); + char * seq = db_getsequence(bp->seqno_first); + unsigned int len = db_getsequencelen(bp->seqno_first); + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp_output, seq, len); + else + fprint_seq_digest_md5(fp_output, seq, len); + if (opt_sizeout) + fprintf(fp_output, ";size=%u;\n", bp->size); + else + fprintf(fp_output, "\n"); + db_fprint_fasta_seq_only(fp_output, bp->seqno_first); + } + else if (opt_relabel) + { + if (opt_sizeout) + fprintf(fp_output, ">%s%ld;size=%u;\n", opt_relabel, i+1, + bp->size); + else + fprintf(fp_output, ">%s%ld\n", opt_relabel, i+1); + db_fprint_fasta_seq_only(fp_output, bp->seqno_first); + } + else + { + if (opt_sizeout) + db_fprint_fasta_with_size(fp_output, + bp->seqno_first, bp->size); + else + db_fprint_fasta(fp_output, + bp->seqno_first); + } + } + selected++; + if (selected == opt_topn) + break; + } + if (opt_output) + progress_update(i); + } + + if (opt_output) + { + progress_done(); + fclose(fp_output); + } + + show_rusage(); + + if (opt_uc) + { + progress_init("Writing uc file, first part", clusters); + for (long i=0; iseqno_first); + long len = db_getsequencelen(bp->seqno_first); + + fprintf(fp_uc, "S\t%ld\t%ld\t*\t*\t*\t*\t*\t%s\t*\n", + i, len, h); + + for (unsigned long next = nextseqtab[bp->seqno_first]; + next; + next = nextseqtab[next]) + fprintf(fp_uc, + "H\t%ld\t%lu\t%.1f\t*\t0\t0\t*\t%s\t%s\n", + i, db_getsequencelen(next), 100.0, db_getheader(next), h); + + progress_update(i); + } + progress_done(); + show_rusage(); + + progress_init("Writing uc file, second part", clusters); + for (long i=0; isize, db_getheader(bp->seqno_first)); + progress_update(i); + } + fclose(fp_uc); + progress_done(); + show_rusage(); + } + + if (selected < clusters) + { + if (!opt_quiet) + fprintf(stderr, + "%ld uniques written, %ld clusters discarded (%.1f%%)\n", + selected, clusters - selected, + 100.0 * (clusters - selected) / clusters); + + if (opt_log) + fprintf(fp_log, + "%ld uniques written, %ld clusters discarded (%.1f%%)\n\n", + selected, clusters - selected, + 100.0 * (clusters - selected) / clusters); + } + + free(nextseqtab); + free(hashtable); + db_free(); +} diff --git a/source/vsearch_src/derep.h b/source/vsearch_src/derep.h new file mode 100644 index 00000000..754b8910 --- /dev/null +++ b/source/vsearch_src/derep.h @@ -0,0 +1,62 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void derep_fulllength(); +void derep_prefix(); diff --git a/source/vsearch_src/fasta.cc b/source/vsearch_src/fasta.cc new file mode 100644 index 00000000..57996512 --- /dev/null +++ b/source/vsearch_src/fasta.cc @@ -0,0 +1,545 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +#define FASTA_BUFFER_ALLOC 8192 + +#ifdef HAVE_BZLIB_H +#define BZ_VERBOSE_0 0 +#define BZ_VERBOSE_1 1 +#define BZ_VERBOSE_2 2 +#define BZ_VERBOSE_3 3 +#define BZ_VERBOSE_4 4 +#define BZ_MORE_MEM 0 /* faster decompression using more memory */ +#define BZ_LESS_MEM 1 /* slower decompression but requires less memory */ +#endif + +#define FORMAT_PLAIN 1 +#define FORMAT_BZIP 2 +#define FORMAT_GZIP 3 + +static unsigned char MAGIC_GZIP[] = "\x1f\x8b"; +static unsigned char MAGIC_BZIP[] = "BZ"; + +void buffer_init(struct fasta_buffer_s * buffer) +{ + buffer->alloc = FASTA_BUFFER_ALLOC; + buffer->data = (char*) xmalloc(buffer->alloc); + buffer->data[0] = 0; + buffer->length = 0; + buffer->position = 0; +} + +void buffer_free(struct fasta_buffer_s * buffer) +{ + if (buffer->data) + free(buffer->data); + buffer->data = 0; + buffer->alloc = 0; + buffer->length = 0; + buffer->position = 0; +} + +fasta_handle fasta_open(const char * filename) +{ + fasta_handle h = (fasta_handle) xmalloc(sizeof(struct fasta_s)); + + h->fp = NULL; + h->fp = fopen(filename, "rb"); + if(!h->fp) + fatal("Error: Unable to open fasta file for reading (%s)", filename); + + /* detect compression (plain, gzipped or bzipped) */ + + unsigned char magic[2]; + h->format = FORMAT_PLAIN; + if (fread(&magic, 1, 2, h->fp) >= 2) + { + if (!memcmp(magic, MAGIC_GZIP, 2)) + h->format = FORMAT_GZIP; + else if (!memcmp(magic, MAGIC_BZIP, 2)) + h->format = FORMAT_BZIP; + } + + /* Get size of original (uncompressed) file */ + + if (fseek(h->fp, 0, SEEK_END)) + fatal("Error: Unable to seek in fasta file (%s)", filename); + h->file_size = ftell(h->fp); + rewind(h->fp); + + if (h->format == FORMAT_GZIP) + { + /* GZIP: Close ordinary file and open again as gzipped file */ +#ifdef HAVE_ZLIB_H + fclose(h->fp); + if (! (h->fp_gz = gzopen(filename, "rb"))) + fatal("Unable to open gzip compressed fasta file (%s)", filename); +#else + fatal("Files compressed with gzip are not supported"); +#endif + } + + if (h->format == FORMAT_BZIP) + { + /* BZIP2: Keep original file open, then open as bzipped file as well */ +#ifdef HAVE_ZLIB_H + int bzError; + if (! (h->fp_bz = BZ2_bzReadOpen(& bzError, h->fp, + BZ_VERBOSE_0, BZ_MORE_MEM, NULL, 0))) + fatal("Unable to open bzip2 compressed fasta file (%s)", filename); +#else + fatal("Files compressed with bzip2 are not supported"); +#endif + } + + h->stripped_all = 0; + + for(int i=0; i<256; i++) + h->stripped[i] = 0; + + h->abundance = abundance_init(); + + h->file_position = 0; + + buffer_init(& h->file_buffer); + buffer_init(& h->header_buffer); + buffer_init(& h->sequence_buffer); + + h->lineno = 1; + h->seqno = -1; + + return h; +} + +void fasta_close(fasta_handle h) +{ + /* Warn about stripped chars */ + + if (h->stripped_all) + { + fprintf(stderr, "WARNING: invalid characters stripped from fasta file:"); + for (int i=0; i<256;i++) + if (h->stripped[i]) + fprintf(stderr, " %c(%lu)", i, h->stripped[i]); + fprintf(stderr, "\n"); + + if (opt_log) + { + fprintf(fp_log, "WARNING: invalid characters stripped from fasta file:"); + for (int i=0; i<256;i++) + if (h->stripped[i]) + fprintf(fp_log, " %c(%lu)", i, h->stripped[i]); + fprintf(fp_log, "\n"); + } + } + +#ifdef HAVE_BZLIB_H + int bz_error; +#endif + + switch(h->format) + { + case FORMAT_PLAIN: + fclose(h->fp); + h->fp = 0; + break; + + case FORMAT_GZIP: +#ifdef HAVE_ZLIB_H + gzclose(h->fp_gz); + h->fp_gz = 0; + break; +#endif + + case FORMAT_BZIP: +#ifdef HAVE_BZLIB_H + BZ2_bzReadClose(&bz_error, h->fp_bz); + h->fp_bz = 0; + break; +#endif + + default: + fatal("Internal error"); + } + + abundance_exit(h->abundance); + + buffer_free(& h->file_buffer); + buffer_free(& h->header_buffer); + buffer_free(& h->sequence_buffer); + + h->file_size = 0; + h->file_position = 0; + + h->lineno = 0; + h->seqno = -1; + + free(h); +} + + +unsigned long fasta_file_fill_buffer(fasta_handle h) +{ + /* read more data if necessary */ + unsigned long rest = h->file_buffer.length - h->file_buffer.position; + + if (rest > 0) + return rest; + else + { + unsigned long space = h->file_buffer.alloc - h->file_buffer.length; + + if (space == 0) + { + /* back to beginning of buffer */ + h->file_buffer.position = 0; + h->file_buffer.length = 0; + space = h->file_buffer.alloc; + } + + int bytes_read = 0; + +#ifdef HAVE_BZLIB_H + int bzError = 0; +#endif + + switch(h->format) + { + case FORMAT_PLAIN: + bytes_read = fread(h->file_buffer.data + + h->file_buffer.position, + 1, + space, + h->fp); + break; + + case FORMAT_GZIP: +#ifdef HAVE_ZLIB_H + bytes_read = gzread(h->fp_gz, + h->file_buffer.data + h->file_buffer.position, + space); + if (bytes_read < 0) + fatal("Error reading gzip compressed fasta file"); + break; +#endif + + case FORMAT_BZIP: +#ifdef HAVE_BZLIB_H + bytes_read = BZ2_bzRead(& bzError, + h->fp_bz, + h->file_buffer.data + + h->file_buffer.position, + space); + if ((bytes_read < 0) || + ! ((bzError == BZ_OK) || + (bzError == BZ_STREAM_END) || + (bzError == BZ_SEQUENCE_ERROR))) + fatal("Error reading bzip2 compressed fasta file"); + break; +#endif + + default: + fatal("Internal error"); + } + + h->file_buffer.length += bytes_read; + return bytes_read; + } +} + +void buffer_extend(struct fasta_buffer_s * buffer, char * buf, unsigned long len) +{ + if (buffer->length + len + 1 > buffer->alloc) + { + /* alloc space for len more characters + terminating zero, + but round up to nearest block size */ + buffer->alloc = + (FASTA_BUFFER_ALLOC * + ((buffer->length + len) / FASTA_BUFFER_ALLOC) + 1); + buffer->data = (char*) xrealloc(buffer->data, buffer->alloc); + } + + /* copy string */ + memcpy(buffer->data + buffer->length, buf, len); + buffer->length += len; + + /* add terminator */ + buffer->data[buffer->length] = 0; +} + +void fasta_truncate_header(fasta_handle h, bool truncateatspace) +{ + /* Truncate the zero-terminated header string by inserting a new + terminator (zero byte) at the first space (if truncateatspace) + or first linefeed. */ + + if (truncateatspace) + h->header_buffer.length = strcspn(h->header_buffer.data, " \n"); + else + h->header_buffer.length = strcspn(h->header_buffer.data, "\n"); + + h->header_buffer.data[h->header_buffer.length] = 0; +} + +void fasta_filter_sequence(fasta_handle h, + unsigned int * char_action, + char * char_mapping) +{ + /* Strip unwanted characters from the sequence and raise warnings or + errors on certain characters. */ + + char * p = h->sequence_buffer.data; + char * q = p; + char c; + char msg[200]; + + while ((c = *p++)) + { + char m = char_action[(int)c]; + + switch(m) + { + case 0: + /* stripped */ + h->stripped_all++; + h->stripped[(int)c]++; + break; + + case 1: + /* legal character */ + *q++ = char_mapping[(int)(c)]; + break; + + case 2: + /* fatal character */ + if ((c>=32) && (c<127)) + snprintf(msg, + 200, + "illegal character '%c' on line %lu in fasta file", + c, + h->lineno); + else + snprintf(msg, + 200, + "illegal unprintable character %#.2x (hexadecimal) on line %lu in fasta file", + c, + h->lineno); + fatal(msg); + break; + + case 3: + /* silently stripped chars (whitespace) */ + break; + + case 4: + /* newline (silently stripped) */ + h->lineno++; + break; + } + } + + /* add zero after sequence */ + *q = 0; + h->sequence_buffer.length = q - h->sequence_buffer.data; +} + +bool fasta_next(fasta_handle h, + bool truncateatspace, + char * char_mapping) +{ + h->header_buffer.length = 0; + h->sequence_buffer.length = 0; + + unsigned long rest = fasta_file_fill_buffer(h); + + if (rest == 0) + return 0; + + /* read header */ + + /* check initial > character */ + + if (h->file_buffer.data[h->file_buffer.position] != '>') + fatal("Invalid FASTA - header must start with > character"); + h->file_buffer.position++; + rest--; + + char * lf = 0; + while (lf == 0) + { + /* get more data if buffer empty*/ + rest = fasta_file_fill_buffer(h); + if (rest == 0) + fatal("Invalid FASTA - header must be terminated with newline"); + + /* find LF */ + lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, + '\n', + rest); + + /* copy to header buffer */ + unsigned long len = rest; + if (lf) + { + /* LF found, copy up to and including LF */ + len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; + h->lineno++; + } + buffer_extend(& h->header_buffer, + h->file_buffer.data + h->file_buffer.position, + len); + h->file_buffer.position += len; + rest -= len; + } + + /* read one or more sequence lines */ + + while (1) + { + /* get more data, if necessary */ + rest = fasta_file_fill_buffer(h); + + /* end if no more data */ + if (rest == 0) + break; + + /* end if new sequence starts */ + if (lf && (h->file_buffer.data[h->file_buffer.position] == '>')) + break; + + /* find LF */ + lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, + '\n', rest); + + unsigned long len = rest; + if (lf) + { + /* LF found, copy up to and including LF */ + len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; + } + buffer_extend(& h->sequence_buffer, + h->file_buffer.data + h->file_buffer.position, + len); + h->file_buffer.position += len; + rest -= len; + } + + h->seqno++; + + fasta_truncate_header(h, truncateatspace); + fasta_filter_sequence(h, char_fasta_action, char_mapping); + +#ifdef HAVE_ZLIB_H + if (h->format == FORMAT_GZIP) + h->file_position = gzoffset(h->fp_gz); + else +#endif + h->file_position = ftell(h->fp); + + return 1; +} + +long fasta_get_abundance(fasta_handle h) +{ + return abundance_get(h->abundance, h->header_buffer.data); +} + +unsigned long fasta_get_position(fasta_handle h) +{ + return h->file_position; +} + +unsigned long fasta_get_size(fasta_handle h) +{ + return h->file_size; +} + +unsigned long fasta_get_lineno(fasta_handle h) +{ + return h->lineno; +} + +unsigned long fasta_get_seqno(fasta_handle h) +{ + return h->seqno; +} + +unsigned long fasta_get_header_length(fasta_handle h) +{ + return h->header_buffer.length; +} + +unsigned long fasta_get_sequence_length(fasta_handle h) +{ + return h->sequence_buffer.length; +} + +char * fasta_get_header(fasta_handle h) +{ + return h->header_buffer.data; +} + +char * fasta_get_sequence(fasta_handle h) +{ + return h->sequence_buffer.data; +} + diff --git a/source/vsearch_src/fasta.h b/source/vsearch_src/fasta.h new file mode 100644 index 00000000..e1f718bd --- /dev/null +++ b/source/vsearch_src/fasta.h @@ -0,0 +1,114 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +struct fasta_buffer_s +{ + char * data; + unsigned long length; + unsigned long alloc; + unsigned long position; +}; + +struct fasta_s +{ + FILE * fp; + +#ifdef HAVE_ZLIB_H + gzFile fp_gz; +#endif + +#ifdef HAVE_BZLIB_H + BZFILE * fp_bz; +#endif + + abundance_t * abundance; + + struct fasta_buffer_s file_buffer; + struct fasta_buffer_s header_buffer; + struct fasta_buffer_s sequence_buffer; + + unsigned long file_size; + unsigned long file_position; + + unsigned long lineno; + long seqno; + + unsigned long stripped_all; + unsigned long stripped[256]; + + int format; +}; + +typedef struct fasta_s * fasta_handle; + +fasta_handle fasta_open(const char * filename); +void fasta_close(fasta_handle h); +bool fasta_next(fasta_handle h, + bool truncateatspace, + char * char_mapping); +unsigned long fasta_get_position(fasta_handle h); +unsigned long fasta_get_size(fasta_handle h); +unsigned long fasta_get_lineno(fasta_handle h); +unsigned long fasta_get_seqno(fasta_handle h); +char * fasta_get_header(fasta_handle h); +char * fasta_get_sequence(fasta_handle h); +unsigned long fasta_get_header_length(fasta_handle h); +unsigned long fasta_get_sequence_length(fasta_handle h); +long fasta_get_abundance(fasta_handle h); diff --git a/source/vsearch_src/fastq.cc b/source/vsearch_src/fastq.cc new file mode 100644 index 00000000..bd7420d7 --- /dev/null +++ b/source/vsearch_src/fastq.cc @@ -0,0 +1,709 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +#define FASTQ_BUFFER_ALLOC 8192 + +#ifdef HAVE_BZLIB_H +#define BZ_VERBOSE_0 0 +#define BZ_VERBOSE_1 1 +#define BZ_VERBOSE_2 2 +#define BZ_VERBOSE_3 3 +#define BZ_VERBOSE_4 4 +#define BZ_MORE_MEM 0 /* faster decompression using more memory */ +#define BZ_LESS_MEM 1 /* slower decompression but requires less memory */ +#endif + +#define FORMAT_PLAIN 1 +#define FORMAT_BZIP 2 +#define FORMAT_GZIP 3 + +static unsigned char MAGIC_GZIP[] = "\x1f\x8b"; +static unsigned char MAGIC_BZIP[] = "BZ"; + +static char map_identity[256]; + +void fastq_fatal(unsigned long lineno, const char * msg) +{ + char * string; + if (asprintf(& string, + "Invalid line %lu in FASTQ file: %s", + lineno, + msg) == -1) + fatal("Out of memory"); + + if (string) + { + fatal(string); + free(string); + } + else + fatal("Out of memory"); +} + +void buffer_init(struct fastq_buffer_s * buffer) +{ + buffer->alloc = FASTQ_BUFFER_ALLOC; + buffer->data = (char*) xmalloc(buffer->alloc); + buffer->data[0] = 0; + buffer->length = 0; + buffer->position = 0; +} + +void buffer_free(struct fastq_buffer_s * buffer) +{ + if (buffer->data) + free(buffer->data); + buffer->data = 0; + buffer->alloc = 0; + buffer->length = 0; + buffer->position = 0; +} + +void buffer_makespace(struct fastq_buffer_s * buffer, unsigned long x) +{ + /* make sure there is space for x more chars in buffer */ + + if (buffer->length + x > buffer->alloc) + { + /* alloc space for x more characters, + but round up to nearest block size */ + buffer->alloc = + ((buffer->length + x + FASTQ_BUFFER_ALLOC - 1) / FASTQ_BUFFER_ALLOC) + * FASTQ_BUFFER_ALLOC; + buffer->data = (char*) xrealloc(buffer->data, buffer->alloc); + } +} + +void buffer_truncate(struct fastq_buffer_s * buffer, bool truncateatspace) +{ + /* Truncate the zero-terminated header string by inserting a new + terminator (zero byte) at the first space (if truncateatspace) + or first linefeed. */ + + if (truncateatspace) + buffer->length = strcspn(buffer->data, " \n"); + else + buffer->length = strcspn(buffer->data, "\n"); + + buffer->data[buffer->length] = 0; +} + + +fastq_handle fastq_open(const char * filename) +{ + fastq_handle h = (fastq_handle) xmalloc(sizeof(struct fastq_s)); + + h->fp = NULL; + h->fp = fopen(filename, "rb"); + if(!h->fp) + fatal("Error: Unable to open fastq file for reading (%s)", filename); + + /* detect compression (plain, gzipped or bzipped) */ + + unsigned char magic[2]; + h->format = FORMAT_PLAIN; + if (fread(&magic, 1, 2, h->fp) >= 2) + { + if (!memcmp(magic, MAGIC_GZIP, 2)) + h->format = FORMAT_GZIP; + else if (!memcmp(magic, MAGIC_BZIP, 2)) + h->format = FORMAT_BZIP; + } + + /* Get size of original (uncompressed) file */ + + if (fseek(h->fp, 0, SEEK_END)) + fatal("Error: Unable to seek in fastq file (%s)", filename); + h->file_size = ftell(h->fp); + rewind(h->fp); + + if (h->format == FORMAT_GZIP) + { + /* GZIP: Close ordinary file and open again as gzipped file */ +#ifdef HAVE_ZLIB_H + fclose(h->fp); + if (! (h->fp_gz = gzopen(filename, "rb"))) + fatal("Unable to open gzip compressed fastq file (%s)", filename); +#else + fatal("Files compressed with gzip are not supported"); +#endif + } + + if (h->format == FORMAT_BZIP) + { + /* BZIP2: Keep original file open, then open as bzipped file as well */ +#ifdef HAVE_ZLIB_H + int bzError; + if (! (h->fp_bz = BZ2_bzReadOpen(& bzError, h->fp, + BZ_VERBOSE_0, BZ_MORE_MEM, NULL, 0))) + fatal("Unable to open bzip2 compressed fastq file (%s)", filename); +#else + fatal("Files compressed with bzip2 are not supported"); +#endif + } + + h->stripped_all = 0; + + for(int i=0; i<256; i++) + h->stripped[i] = 0; + + h->file_position = 0; + + buffer_init(& h->file_buffer); + buffer_init(& h->header_buffer); + buffer_init(& h->sequence_buffer); + buffer_init(& h->quality_buffer); + + h->lineno = 1; + h->seqno = -1; + + for(int i=0; i<256; i++) + map_identity[i] = i; + + return h; +} + +void fastq_close(fastq_handle h) +{ + /* Warn about stripped chars */ + + if (h->stripped_all) + { + fprintf(stderr, "WARNING: invalid characters stripped from fastq file:"); + for (int i=0; i<256;i++) + if (h->stripped[i]) + fprintf(stderr, " %c(%lu)", i, h->stripped[i]); + fprintf(stderr, "\n"); + + if (opt_log) + { + fprintf(fp_log, "WARNING: invalid characters stripped from fastq file:"); + for (int i=0; i<256;i++) + if (h->stripped[i]) + fprintf(fp_log, " %c(%lu)", i, h->stripped[i]); + fprintf(fp_log, "\n"); + } + } + +#ifdef HAVE_BZLIB_H + int bz_error; +#endif + + switch(h->format) + { + case FORMAT_PLAIN: + fclose(h->fp); + h->fp = 0; + break; + + case FORMAT_GZIP: +#ifdef HAVE_ZLIB_H + gzclose(h->fp_gz); + h->fp_gz = 0; + break; +#endif + + case FORMAT_BZIP: +#ifdef HAVE_BZLIB_H + BZ2_bzReadClose(&bz_error, h->fp_bz); + h->fp_bz = 0; + break; +#endif + + default: + fatal("Internal error"); + } + + buffer_free(& h->file_buffer); + buffer_free(& h->header_buffer); + buffer_free(& h->sequence_buffer); + buffer_free(& h->quality_buffer); + + h->file_size = 0; + h->file_position = 0; + + h->lineno = 0; + h->seqno = -1; + + free(h); +} + + +unsigned long fastq_file_fill_buffer(fastq_handle h) +{ + /* read more data if necessary */ + unsigned long rest = h->file_buffer.length - h->file_buffer.position; + + if (rest > 0) + return rest; + else + { + unsigned long space = h->file_buffer.alloc - h->file_buffer.length; + + if (space == 0) + { + /* back to beginning of buffer */ + h->file_buffer.position = 0; + h->file_buffer.length = 0; + space = h->file_buffer.alloc; + } + + int bytes_read = 0; + +#ifdef HAVE_BZLIB_H + int bzError = 0; +#endif + + switch(h->format) + { + case FORMAT_PLAIN: + bytes_read = fread(h->file_buffer.data + + h->file_buffer.position, + 1, + space, + h->fp); + break; + + case FORMAT_GZIP: +#ifdef HAVE_ZLIB_H + bytes_read = gzread(h->fp_gz, + h->file_buffer.data + h->file_buffer.position, + space); + if (bytes_read < 0) + fatal("Error reading gzip compressed fastq file"); + break; +#endif + + case FORMAT_BZIP: +#ifdef HAVE_BZLIB_H + bytes_read = BZ2_bzRead(& bzError, + h->fp_bz, + h->file_buffer.data + + h->file_buffer.position, + space); + if ((bytes_read < 0) || + ! ((bzError == BZ_OK) || + (bzError == BZ_STREAM_END) || + (bzError == BZ_SEQUENCE_ERROR))) + fatal("Error reading bzip2 compressed fastq file"); + break; +#endif + + default: + fatal("Internal error"); + } + + h->file_buffer.length += bytes_read; + return bytes_read; + } +} + +void buffer_extend(struct fastq_buffer_s * dest_buffer, + char * source_buf, + unsigned long len) +{ + buffer_makespace(dest_buffer, len+1); + memcpy(dest_buffer->data + dest_buffer->length, + source_buf, + len); + dest_buffer->length += len; + dest_buffer->data[dest_buffer->length] = 0; +} + +void buffer_filter_extend(fastq_handle h, + struct fastq_buffer_s * dest_buffer, + char * source_buf, + unsigned long len, + unsigned int * char_action, + char * char_mapping, + unsigned long lineno_start) +{ + buffer_makespace(dest_buffer, len+1); + + /* Strip unwanted characters from the string and raise warnings or + errors on certain characters. */ + + unsigned long lineno = lineno_start; + + char * p = source_buf; + char * d = dest_buffer->data + dest_buffer->length; + char * q = d; + char msg[200]; + + for(unsigned long i = 0; i < len; i++) + { + char c = *p++; + char m = char_action[(int)c]; + + switch(m) + { + case 0: + /* stripped */ + h->stripped_all++; + h->stripped[(int)c]++; + break; + + case 1: + /* legal character */ + *q++ = char_mapping[(int)(c)]; + break; + + case 2: + /* fatal character */ + if ((c>=32) && (c<127)) + snprintf(msg, + 200, + "Illegal character '%c'", + c); + else + snprintf(msg, + 200, + "Illegal unprintable character %#.2x (hexadecimal)", + c); + fastq_fatal(lineno, msg); + break; + + case 3: + /* silently stripped chars (whitespace) */ + break; + + case 4: + /* newline (silently stripped) */ + lineno++; + break; + } + } + + /* add zero after sequence */ + *q = 0; + dest_buffer->length += q - d; +} + +bool fastq_next(fastq_handle h, + bool truncateatspace, + char * char_mapping) +{ + h->header_buffer.length = 0; + h->header_buffer.data[0] = 0; + h->sequence_buffer.length = 0; + h->sequence_buffer.data[0] = 0; + h->quality_buffer.length = 0; + h->quality_buffer.data[0] = 0; + + unsigned long rest = fastq_file_fill_buffer(h); + + /* check end of file */ + + if (rest == 0) + return 0; + + /* read header */ + + /* check initial @ character */ + + if (h->file_buffer.data[h->file_buffer.position] != '@') + fastq_fatal(h->lineno, "Header line must start with '@' character"); + h->file_buffer.position++; + rest--; + + char * lf = 0; + while (lf == 0) + { + /* get more data if buffer empty */ + rest = fastq_file_fill_buffer(h); + if (rest == 0) + fastq_fatal(h->lineno, "Unexpected end of file"); + + /* find LF */ + lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, + '\n', + rest); + + /* copy to header buffer */ + unsigned long len = rest; + if (lf) + { + /* LF found, copy up to and including LF */ + len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; + h->lineno++; + } + buffer_extend(& h->header_buffer, + h->file_buffer.data + h->file_buffer.position, + len); + h->file_buffer.position += len; + rest -= len; + } + + unsigned long lineno_seq = h->lineno; + + /* read sequence line(s) */ + lf = 0; + while (1) + { + /* get more data, if necessary */ + rest = fastq_file_fill_buffer(h); + + /* cannot end here */ + if (rest == 0) + fastq_fatal(h->lineno, "Unexpected end of file"); + + /* end when new line starting with + is seen */ + if (lf && (h->file_buffer.data[h->file_buffer.position] == '+')) + break; + + /* find LF */ + lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, + '\n', rest); + + /* copy to sequence buffer */ + unsigned long len = rest; + if (lf) + { + /* LF found, copy up to and including LF */ + len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; + h->lineno++; + } + + buffer_filter_extend(h, + & h->sequence_buffer, + h->file_buffer.data + h->file_buffer.position, + len, + char_fq_action_seq, char_mapping, lineno_seq); + h->file_buffer.position += len; + rest -= len; + } + + if (h->sequence_buffer.length == 0) + fastq_fatal(lineno_seq, "Empty sequence line"); + + unsigned long lineno_plus = h->lineno; + + /* read + line */ + fastq_buffer_s plusline_buffer; + buffer_init(&plusline_buffer); + + /* skip + character */ + h->file_buffer.position++; + rest--; + + lf = 0; + while (lf == 0) + { + /* get more data if buffer empty */ + rest = fastq_file_fill_buffer(h); + + /* cannot end here */ + if (rest == 0) + fastq_fatal(h->lineno, "Unexpected end of file"); + + /* find LF */ + lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, + '\n', + rest); + /* copy to plusline buffer */ + unsigned long len = rest; + if (lf) + { + /* LF found, copy up to and including LF */ + len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; + h->lineno++; + } + buffer_extend(& plusline_buffer, + h->file_buffer.data + h->file_buffer.position, + len); + h->file_buffer.position += len; + rest -= len; + } + + /* check that the plus line is empty or identical to @ line */ + + bool plusline_invalid = 0; + if (h->header_buffer.length == plusline_buffer.length) + { + if (memcmp(h->header_buffer.data, + plusline_buffer.data, + h->header_buffer.length)) + plusline_invalid = 1; + } + else + { + if ((plusline_buffer.length > 2) || + ((plusline_buffer.length == 2) && (plusline_buffer.data[0] != '\r'))) + plusline_invalid = 1; + } + if (plusline_invalid) + fastq_fatal(lineno_plus, + "'+' line must be empty or identical to header"); + + buffer_free(&plusline_buffer); + + /* read quality line(s) */ + + unsigned long lineno_qual = h->lineno; + + lf = 0; + while (1) + { + /* get more data, if necessary */ + rest = fastq_file_fill_buffer(h); + + /* end if no more data */ + if (rest == 0) + break; + + /* end if next entry starts : LF + '@' + correct length */ + if (lf && + (h->file_buffer.data[h->file_buffer.position] == '@') && + (h->quality_buffer.length == h->sequence_buffer.length)) + break; + + /* find LF */ + lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, + '\n', rest); + + /* copy to quality buffer */ + unsigned long len = rest; + if (lf) + { + /* LF found, copy up to and including LF */ + len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; + h->lineno++; + } + buffer_filter_extend(h, + & h->quality_buffer, + h->file_buffer.data + h->file_buffer.position, + len, + char_fq_action_qual, map_identity, lineno_qual); + h->file_buffer.position += len; + rest -= len; + } + + if (h->quality_buffer.length == 0) + fastq_fatal(lineno_seq, "Empty quality line"); + + if (h->sequence_buffer.length != h->quality_buffer.length) + fastq_fatal(lineno_qual, + "Sequence and quality lines must be equally long"); + + buffer_truncate(& h->header_buffer, truncateatspace); + +#ifdef HAVE_ZLIB_H + if (h->format == FORMAT_GZIP) + h->file_position = gzoffset(h->fp_gz); + else +#endif + h->file_position = ftell(h->fp); + + h->seqno++; + + return 1; +} + +char * fastq_get_quality(fastq_handle h) +{ + return h->quality_buffer.data; +} + +unsigned long fastq_get_quality_length(fastq_handle h) +{ + return h->quality_buffer.length; +} + +unsigned long fastq_get_position(fastq_handle h) +{ + return h->file_position; +} + +unsigned long fastq_get_size(fastq_handle h) +{ + return h->file_size; +} + +unsigned long fastq_get_lineno(fastq_handle h) +{ + return h->lineno; +} + +unsigned long fastq_get_seqno(fastq_handle h) +{ + return h->seqno; +} + +unsigned long fastq_get_header_length(fastq_handle h) +{ + return h->header_buffer.length; +} + +unsigned long fastq_get_sequence_length(fastq_handle h) +{ + return h->sequence_buffer.length; +} + +char * fastq_get_header(fastq_handle h) +{ + return h->header_buffer.data; +} + +char * fastq_get_sequence(fastq_handle h) +{ + return h->sequence_buffer.data; +} diff --git a/source/vsearch_src/fastq.h b/source/vsearch_src/fastq.h new file mode 100644 index 00000000..2e7ebc63 --- /dev/null +++ b/source/vsearch_src/fastq.h @@ -0,0 +1,115 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +struct fastq_buffer_s +{ + char * data; + unsigned long length; + unsigned long alloc; + unsigned long position; +}; + +struct fastq_s +{ + FILE * fp; + +#ifdef HAVE_ZLIB_H + gzFile fp_gz; +#endif + +#ifdef HAVE_BZLIB_H + BZFILE * fp_bz; +#endif + + struct fastq_buffer_s file_buffer; + + struct fastq_buffer_s header_buffer; + struct fastq_buffer_s sequence_buffer; + struct fastq_buffer_s quality_buffer; + + unsigned long file_size; + unsigned long file_position; + + unsigned long lineno; + long seqno; + + unsigned long stripped_all; + unsigned long stripped[256]; + + int format; +}; + +typedef struct fastq_s * fastq_handle; + +fastq_handle fastq_open(const char * filename); +void fastq_close(fastq_handle h); +bool fastq_next(fastq_handle h, + bool truncateatspace, + char * char_mapping); +unsigned long fastq_get_position(fastq_handle h); +unsigned long fastq_get_size(fastq_handle h); +unsigned long fastq_get_lineno(fastq_handle h); +unsigned long fastq_get_seqno(fastq_handle h); +char * fastq_get_header(fastq_handle h); +char * fastq_get_sequence(fastq_handle h); +char * fastq_get_quality(fastq_handle h); +unsigned long fastq_get_header_length(fastq_handle h); +unsigned long fastq_get_sequence_length(fastq_handle h); +unsigned long fastq_get_quality_length(fastq_handle h); diff --git a/source/vsearch_src/fastqops.cc b/source/vsearch_src/fastqops.cc new file mode 100644 index 00000000..8e129584 --- /dev/null +++ b/source/vsearch_src/fastqops.cc @@ -0,0 +1,970 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +int fastq_get_qual(char q) +{ + int qual = q - opt_fastq_ascii; + char msg[200]; + + if (qual < opt_fastq_qmin) + { + snprintf(msg, 200, "FASTQ quality value (%d) below qmin (%ld)", + qual, opt_fastq_qmin); + fatal(msg); + } + else if (qual > opt_fastq_qmax) + { + snprintf(msg, 200, "FASTQ quality value (%d) above qmax (%ld)", + qual, opt_fastq_qmax); + fatal(msg); + } + return qual; +} + +void fastq_filter() +{ + fastq_handle h = fastq_open(opt_fastq_filter); + + unsigned long filesize = fastq_get_size(h); + + FILE * fp_fastaout = 0; + FILE * fp_fastqout = 0; + FILE * fp_fastaout_discarded = 0; + FILE * fp_fastqout_discarded = 0; + + if (opt_fastaout) + { + fp_fastaout = fopen(opt_fastaout, "w"); + if (!fp_fastaout) + fatal("Unable to open fasta output file for writing"); + } + + if (opt_fastqout) + { + fp_fastqout = fopen(opt_fastqout, "w"); + if (!fp_fastqout) + fatal("Unable to open fastq output file for writing"); + } + + if (opt_fastaout_discarded) + { + fp_fastaout_discarded = fopen(opt_fastaout_discarded, "w"); + if (!fp_fastaout_discarded) + fatal("Unable to open fasta output file for writing"); + } + + if (opt_fastqout_discarded) + { + fp_fastqout_discarded = fopen(opt_fastqout_discarded, "w"); + if (!fp_fastqout_discarded) + fatal("Unable to open fastq output file for writing"); + } + + unsigned long header_alloc = 0; + char * header = 0; + if (opt_relabel) + { + header_alloc = strlen(opt_relabel) + 25; + header = (char*) xmalloc(header_alloc); + } + + progress_init("Reading fastq file", filesize); + + long kept = 0; + long discarded = 0; + long truncated = 0; + + char hex_md5[LEN_HEX_DIG_MD5]; + char hex_sha1[LEN_HEX_DIG_SHA1]; + + while(fastq_next(h, 0, chrmap_upcase)) + { + long length = fastq_get_sequence_length(h); + char * d = fastq_get_header(h); + char * p = fastq_get_sequence(h); + char * q = fastq_get_quality(h); + + /* strip initial part */ + if (opt_fastq_stripleft > 0) + { + if (opt_fastq_stripleft < length) + { + p += opt_fastq_stripleft; + q += opt_fastq_stripleft; + length -= opt_fastq_stripleft; + } + else + { + p += length; + q += length; + length = 0; + } + } + + /* truncate trailing part */ + if (opt_fastq_trunclen > 0) + { + if (length >= opt_fastq_trunclen) + length = opt_fastq_trunclen; + else + length = 0; + } + + /* quality truncation */ + for (long i = 0; i < length; i++) + { + int qual = fastq_get_qual(q[i]); + + if (qual <= opt_fastq_truncqual) + { + length = i; + break; + } + } + + /* count n's */ + long ncount = 0; + for (long i = 0; i < length; i++) + { + int pc = p[i]; + if ((pc == 'N') || (pc == 'n')) + ncount++; + } + + /* compute ee */ + double ee = 0.0; + for (long i = 0; i < length; i++) + { + int qual = fastq_get_qual(q[i]); + ee += pow(10.0, - qual / 10.0); + } + + if ((length >= opt_fastq_minlen) && + ((opt_fastq_trunclen == 0) || (length >= opt_fastq_trunclen)) && + (ee <= opt_fastq_maxee) && + (ee / length <= opt_fastq_maxee_rate) && + (ncount <= opt_fastq_maxns)) + { + /* keep the sequence */ + kept++; + if ((unsigned long)(length) < fastq_get_sequence_length(h)) + { + truncated++; + p[length] = 0; + q[length] = 0; + } + + if (opt_relabel) + { + (void) snprintf(header, header_alloc, + "%s%ld", opt_relabel, kept); + d = header; + } + else if (opt_relabel_md5) + { + get_hex_seq_digest_md5(hex_md5, p, length); + d = hex_md5; + } + else if (opt_relabel_sha1) + { + get_hex_seq_digest_sha1(hex_sha1, p, length); + d = hex_sha1; + } + + if (opt_fastaout) + { + fprint_fasta_hdr_only(fp_fastaout, d); + fprint_fasta_seq_only(fp_fastaout, p, length, opt_fasta_width); + } + if (opt_fastqout) + fprint_fastq(fp_fastqout, d, p, q, opt_eeout, ee); + } + else + { + discarded++; + p = fastq_get_sequence(h); + q = fastq_get_quality(h); + + if (opt_relabel) + { + (void) snprintf(header, header_alloc, "%s%ld", opt_relabel, discarded); + d = header; + } + else if (opt_relabel_md5) + { + get_hex_seq_digest_md5(hex_md5, p, length); + d = hex_md5; + } + else if (opt_relabel_sha1) + { + get_hex_seq_digest_sha1(hex_sha1, p, length); + d = hex_sha1; + } + + if (opt_fastaout_discarded) + { + fprint_fasta_hdr_only(fp_fastaout_discarded, d); + fprint_fasta_seq_only(fp_fastaout_discarded, + p, + length, + opt_fasta_width); + } + if (opt_fastqout_discarded) + fprint_fastq(fp_fastqout_discarded, d, p, q, opt_eeout, ee); + } + + progress_update(fastq_get_position(h)); + } + progress_done(); + + fprintf(stderr, + "%ld sequences kept (of which %ld truncated), %ld sequences discarded.\n", + kept, + truncated, + discarded); + + if (header) + free(header); + + if (opt_fastaout) + fclose(fp_fastaout); + + if (opt_fastqout) + fclose(fp_fastqout); + + if (opt_fastaout_discarded) + fclose(fp_fastaout_discarded); + + if (opt_fastqout_discarded) + fclose(fp_fastqout_discarded); + + fastq_close(h); +} + +void fastq_chars() +{ + unsigned long sequence_chars[256]; + unsigned long quality_chars[256]; + unsigned long tail_chars[256]; + unsigned long total_chars = 0; + int maxrun[256]; + + for(int c=0; c<256; c++) + { + sequence_chars[c] = 0; + quality_chars[c] = 0; + tail_chars[c] = 0; + maxrun[c] = 0; + } + + fastq_handle h = fastq_open(opt_fastq_chars); + + unsigned long filesize = fastq_get_size(h); + + progress_init("Reading fastq file", filesize); + + unsigned long seq_count = 0; + + int qmin_n = 255, qmax_n = 0; + + while(fastq_next(h, 0, chrmap_upcase)) + { + long len = fastq_get_sequence_length(h); + char * p = fastq_get_sequence(h); + char * q = fastq_get_quality(h); + + seq_count++; + total_chars += len; + + int run_char = -1; + int run = 0; + + long i = 0; + while(i qmax_n) + qmax_n = qc; + } + + if (pc == run_char) + { + run++; + if (run > maxrun[run_char]) + maxrun[run_char] = run; + } + else + { + run_char = pc; + run = 0; + } + + i++; + } + + if (len >= opt_fastq_tail) + { + q = fastq_get_quality(h) + len - 1; + int tail_char = *q--; + int tail_len = 1; + while(*q-- == tail_char) + { + tail_len++; + if (tail_len >= opt_fastq_tail) + break; + } + if (tail_len >= opt_fastq_tail) + tail_chars[tail_char]++; + } + + progress_update(fastq_get_position(h)); + } + progress_done(); + + fastq_close(h); + + fprintf(stderr, "Read %lu sequences.\n", seq_count); + + char qmin = 0; + char qmax = 0; + + for(int c=0; c<=255; c++) + { + if (quality_chars[c]) + { + qmin = c; + break; + } + } + + for(int c=255; c>=0; c--) + { + if (quality_chars[c]) + { + qmax = c; + break; + } + } + + char fastq_ascii, fastq_qmin, fastq_qmax; + + if (qmin < 59) + fastq_ascii = 33; + else + fastq_ascii = 64; + + fprintf(stderr, "Qmin %d, QMax %d, Range %d\n", + qmin, qmax, qmax-qmin+1); + + fastq_qmax = qmax - fastq_ascii; + fastq_qmin = qmin - fastq_ascii; + + fprintf(stderr, "Guess: -fastq_qmin %d -fastq_qmax %d -fastq_ascii %d\n", + fastq_qmin, fastq_qmax, fastq_ascii); + + if (fastq_ascii == 64) + { + if (qmin < 64) + fprintf(stderr, "Guess: Solexa format\n"); + else if (qmin < 66) + fprintf(stderr, "Guess: Illumina 1.3+ format\n"); + else + fprintf(stderr, "Guess: Illumina 1.5+ format\n"); + } + else + { + fprintf(stderr, "Guess: Sanger / Illumina 1.8+ format\n"); + } + + fprintf(stderr, "\n"); + fprintf(stderr, "Letter N Freq MaxRun\n"); + fprintf(stderr, "------ ---------- ------ ------\n"); + + for(int c=0; c<256; c++) + { + if (sequence_chars[c] > 0) + { + fprintf(stderr, " %c %10lu %5.1f%% %6d", + c, + sequence_chars[c], + 100.0 * sequence_chars[c] / total_chars, + maxrun[c]); + if ((c == 'N') || (c == 'n')) + { + if (qmin_n < qmax_n) + fprintf(stderr, " Q=%c..%c", qmin_n, qmax_n); + else + fprintf(stderr, " Q=%c", qmin_n); + } + fprintf(stderr, "\n"); + } + } + + fprintf(stderr, "\n"); + fprintf(stderr, "Char ASCII Freq Tails\n"); + fprintf(stderr, "---- ----- ------ ----------\n"); + + for(int c=qmin; c<=qmax; c++) + { + if (quality_chars[c] > 0) + { + fprintf(stderr, " '%c' %5d %5.1f%% %10lu\n", + c, + c, + 100.0 * quality_chars[c] / total_chars, + tail_chars[c]); + } + } +} + +double q2p(double q) +{ + return pow(10.0, - q / 10.0); +} + +void fastq_stats() +{ + fastq_handle h = fastq_open(opt_fastq_stats); + + unsigned long filesize = fastq_get_size(h); + + progress_init("Reading fastq file", filesize); + + unsigned long seq_count = 0; + unsigned long symbols = 0; + + long read_length_alloc = 512; + int * read_length_table = (int*) xmalloc(sizeof(int) * read_length_alloc); + memset(read_length_table, 0, sizeof(int) * read_length_alloc); + int * qual_length_table = (int*) xmalloc(sizeof(int) * read_length_alloc * 256); + memset(qual_length_table, 0, sizeof(int) * read_length_alloc * 256); + int * ee_length_table = (int *) xmalloc(sizeof(int) * read_length_alloc * 4); + memset(ee_length_table, 0, sizeof(int) * read_length_alloc * 4); + int * q_length_table = (int *) xmalloc(sizeof(int) * read_length_alloc * 4); + memset(q_length_table, 0, sizeof(int) * read_length_alloc * 4); + + long len_min = LONG_MAX; + long len_max = 0; + + int qmin = +1000; + int qmax = -1000; + + unsigned long quality_chars[256]; + for(int c=0; c<256; c++) + quality_chars[c] = 0; + + while(fastq_next(h, 0, chrmap_upcase)) + { + seq_count++; + + long len = fastq_get_sequence_length(h); + char * q = fastq_get_quality(h); + + /* update length statistics */ + + if (len+1 > read_length_alloc) + { + read_length_table = (int*) xrealloc(read_length_table, + sizeof(int) * (len+1)); + memset(read_length_table + read_length_alloc, 0, + sizeof(int) * (len + 1 - read_length_alloc)); + qual_length_table = (int*) xrealloc(qual_length_table, + sizeof(int) * (len+1) * 256); + memset(qual_length_table + 256 * read_length_alloc, 0, + sizeof(int) * (len + 1 - read_length_alloc) * 256); + ee_length_table = (int*) xrealloc(ee_length_table, + sizeof(int) * (len+1) * 4); + memset(ee_length_table + 4 * read_length_alloc, 0, + sizeof(int) * (len + 1 - read_length_alloc) * 4); + q_length_table = (int*) xrealloc(q_length_table, + sizeof(int) * (len+1) * 4); + memset(q_length_table + 4 * read_length_alloc, 0, + sizeof(int) * (len + 1 - read_length_alloc) * 4); + read_length_alloc = len + 1; + } + + read_length_table[len]++; + + if (len < len_min) + len_min = len; + if (len > len_max) + len_max = len; + + /* update quality statistics */ + + symbols += len; + + double ee_limit[4] = { 1.0, 0.5, 0.25, 0.1 }; + + double ee = 0.0; + int qmin_this = 1000; + for(long i=0; i < len; i++) + { + int qc = q[i]; + + int qual = qc - opt_fastq_ascii; + if ((qual < opt_fastq_qmin) || (qual > opt_fastq_qmax)) + fatal("FASTQ quality value out of range"); + + quality_chars[qc]++; + if (qc < qmin) + qmin = qc; + if (qc > qmax) + qmax = qc; + + qual_length_table[256*i + qc]++; + + ee += q2p(qual); + + for(int z=0; z<4; z++) + { + if (ee <= ee_limit[z]) + ee_length_table[4*i+z]++; + else + break; + } + + if (qual < qmin_this) + qmin_this = qual; + + for(int z=0; z<4; z++) + { + if (qmin_this > 5*(z+1)) + q_length_table[4*i+z]++; + else + break; + } + } + + progress_update(fastq_get_position(h)); + } + progress_done(); + + /* compute various distributions */ + + int * length_dist = (int*) xmalloc(sizeof(int) * (len_max+1)); + long * symb_dist = (long*) xmalloc(sizeof(long) * (len_max+1)); + + double * rate_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); + double * avgq_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); + double * avgee_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); + double * avgp_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); + + long length_accum = 0; + long symb_accum = 0; + double p_sum = 0.0; + + for(long i = 0; i <= len_max; i++) + { + length_accum += read_length_table[i]; + length_dist[i] = length_accum; + + symb_accum += seq_count - length_accum; + symb_dist[i] = symb_accum; + + long q = 0; + long x = 0; + double e_sum = 0.0; + for(int c=qmin; c<=qmax; c++) + { + int qual = c - opt_fastq_ascii; + x += qual_length_table[256*i + c]; + + q += qual_length_table[256*i + c] * qual; + + p_sum += qual_length_table[256*i + c] * q2p(qual); + e_sum += qual_length_table[256*i + c] * q2p(qual); + } + avgq_dist[i] = 1.0 * q / x; + avgp_dist[i] = e_sum / x; + avgee_dist[i] = 1.0 * p_sum / x; + rate_dist[i] = 1.0 * p_sum / symb_accum; + } + + if (fp_log) + { + fprintf(fp_log, "\n"); + fprintf(fp_log, "Read length distribution\n"); + fprintf(fp_log, " L N Pct AccPct\n"); + fprintf(fp_log, "------- ---------- ------- -------\n"); + + for(long i = len_max; i >= len_min; i--) + { + fprintf(fp_log, "%2s%5ld %10d %5.1lf%% %5.1lf%%\n", + (i == len_max ? ">=" : " "), + i, + read_length_table[i], + read_length_table[i] * 100.0 / seq_count, + 100.0 * (seq_count - length_dist[i-1]) / seq_count); + } + + fprintf(fp_log, "\n"); + fprintf(fp_log, "Q score distribution\n"); + fprintf(fp_log, "ASCII Q Pe N Pct AccPct\n"); + fprintf(fp_log, "----- --- ------- ---------- ------- -------\n"); + + long qual_accum = 0; + for(int c = qmax ; c >= qmin ; c--) + { + if (quality_chars[c] > 0) + { + qual_accum += quality_chars[c]; + fprintf(fp_log, + " %c %3ld %7.5lf %10lu %6.1lf%% %6.1lf%%\n", + c, + c - opt_fastq_ascii, + q2p(c - opt_fastq_ascii), + quality_chars[c], + 100.0 * quality_chars[c] / symbols, + 100.0 * qual_accum / symbols); + } + } + + fprintf(fp_log, "\n"); + fprintf(fp_log, " L PctRecs AvgQ P(AvgQ) AvgP AvgEE Rate RatePct\n"); + fprintf(fp_log, "----- ------- ---- ------- -------- ----- --------- --------\n"); + + for(long i = 2; i <= len_max; i++) + { + double PctRecs = 100.0 * (seq_count - length_dist[i-1]) / seq_count; + double AvgQ = avgq_dist[i-1]; + double AvgP = avgp_dist[i-1]; + double AvgEE = avgee_dist[i-1]; + double Rate = rate_dist[i-1]; + + fprintf(fp_log, + "%5ld %6.1lf%% %4.1lf %7.5lf %8.6lf %5.2lf %9.6lf %7.3lf%%\n", + i, + PctRecs, + AvgQ, + q2p(AvgQ), + AvgP, + AvgEE, + Rate, + 100.0 * Rate); + } + + fprintf(fp_log, "\n"); + fprintf(fp_log, " L 1.0000 0.5000 0.2500 0.1000 1.0000 0.5000 0.2500 0.1000\n"); + fprintf(fp_log, "----- ------- ------- ------- ------- ------- ------- ------- -------\n"); + + for(long i = len_max+1; i >= 1; i--) + { + long read_count[4]; + double read_percentage[4]; + + for(int z=0; z<4; z++) + { + if (i>=2) + read_count[z] = ee_length_table[4*(i-2)+z]; + else + read_count[z] = seq_count; + read_percentage[z] = 100.0 * read_count[z] / seq_count; + } + + fprintf(fp_log, + "%5ld %7ld %7ld %7ld %7ld " + "%6.2lf%% %6.2lf%% %6.2lf%% %6.2lf%%\n", + i, + read_count[0], read_count[1], + read_count[2], read_count[3], + read_percentage[0], read_percentage[1], + read_percentage[2], read_percentage[3]); + } + + + fprintf(fp_log, "\n"); + fprintf(fp_log, "Truncate at first Q\n"); + fprintf(fp_log, " Len Q=5 Q=10 Q=15 Q=20\n"); + fprintf(fp_log, "----- ------ ------ ------ ------\n"); + + for(long i = len_max; i >= len_max/2; i--) + { + double read_percentage[4]; + + for(int z=0; z<4; z++) + read_percentage[z] = 100.0 * q_length_table[4*(i-1)+z] / seq_count; + + fprintf(fp_log, "%5ld %5.1lf%% %5.1lf%% %5.1lf%% %5.1lf%%\n", + i, + read_percentage[0], read_percentage[1], + read_percentage[2], read_percentage[3]); + } + + fprintf(fp_log, "\n"); + fprintf(fp_log, "%10lu Recs (%.1lfM), 0 too long\n", + seq_count, seq_count / 1.0e6); + fprintf(fp_log, "%10.1lf Avg length\n", 1.0 * symbols / seq_count); + fprintf(fp_log, "%9.1lfM Bases\n", symbols / 1.0e6); + } + + free(read_length_table); + free(qual_length_table); + free(ee_length_table); + free(q_length_table); + + free(length_dist); + free(symb_dist); + free(rate_dist); + free(avgq_dist); + free(avgee_dist); + free(avgp_dist); + + fastq_close(h); + + fprintf(stderr, "Read %lu sequences.\n", seq_count); +} + +void fastx_revcomp() +{ + int filetype = fastx_detect(opt_fastx_revcomp); + + unsigned long buffer_alloc = 512; + char * seq_buffer = (char*) xmalloc(buffer_alloc); + char * qual_buffer = (char*) xmalloc(buffer_alloc); + + unsigned long header_alloc = 512; + char * header = (char*) xmalloc(header_alloc); + + unsigned long suffix_length = opt_label_suffix ? strlen(opt_label_suffix) : 0; + + if (filetype == 1) + { + /* fasta */ + fasta_handle h = fasta_open(opt_fastx_revcomp); + unsigned long filesize = fasta_get_size(h); + + FILE * fp_fastaout = 0; + FILE * fp_fastqout = 0; + + if (opt_fastaout) + { + fp_fastaout = fopen(opt_fastaout, "w"); + if (!fp_fastaout) + fatal("Unable to open fasta output file for writing"); + } + + if (opt_fastqout) + { + fp_fastqout = fopen(opt_fastqout, "w"); + if (!fp_fastqout) + fatal("Unable to open fastq output file for writing"); + + fprintf(stderr, "WARNING: Writing FASTQ output without base quality information; using max value\n"); + } + + progress_init("Reading fasta file", filesize); + + while(fasta_next(h, 0, chrmap_no_change)) + { + unsigned long length = fasta_get_sequence_length(h); + unsigned long hlen = fasta_get_header_length(h); + char * d = fasta_get_header(h); + char * p = fasta_get_sequence(h); + + if (hlen + suffix_length + 1 > header_alloc) + header_alloc = hlen + suffix_length + 1; + header = (char*) xrealloc(header, header_alloc); + + if (length + 1 > buffer_alloc) + buffer_alloc = length + 1; + seq_buffer = (char *) xrealloc(seq_buffer, buffer_alloc); + qual_buffer = (char *) xrealloc(qual_buffer, buffer_alloc); + + if (opt_label_suffix) + snprintf(header, header_alloc, "%s%s", d, opt_label_suffix); + else + snprintf(header, header_alloc, "%s", d); + + reverse_complement(seq_buffer, p, length); + + /* set quality values to max */ + for(unsigned long i=0; i header_alloc) + header_alloc = hlen + suffix_length + 1; + header = (char*) xrealloc(header, header_alloc); + + if (length + 1 > buffer_alloc) + buffer_alloc = length + 1; + seq_buffer = (char *) xrealloc(seq_buffer, buffer_alloc); + qual_buffer = (char *) xrealloc(qual_buffer, buffer_alloc); + + if (opt_label_suffix) + snprintf(header, header_alloc, "%s%s", d, opt_label_suffix); + else + snprintf(header, header_alloc, "%s", d); + + reverse_complement(seq_buffer, p, length); + + /* reverse quality values */ + for(unsigned long i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void fastq_chars(); +void fastq_filter(); +void fastq_stats(); +void fastx_revcomp(); diff --git a/source/vsearch_src/fastxdetect.cc b/source/vsearch_src/fastxdetect.cc new file mode 100644 index 00000000..870011d3 --- /dev/null +++ b/source/vsearch_src/fastxdetect.cc @@ -0,0 +1,224 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +#ifdef HAVE_BZLIB_H +#define BZ_VERBOSE_0 0 +#define BZ_VERBOSE_1 1 +#define BZ_VERBOSE_2 2 +#define BZ_VERBOSE_3 3 +#define BZ_VERBOSE_4 4 +#define BZ_MORE_MEM 0 /* faster decompression using more memory */ +#define BZ_LESS_MEM 1 /* slower decompression but requires less memory */ +#endif + +#define FORMAT_PLAIN 1 +#define FORMAT_BZIP 2 +#define FORMAT_GZIP 3 + +static unsigned char MAGIC_GZIP[] = "\x1f\x8b"; +static unsigned char MAGIC_BZIP[] = "BZ"; + +int fastx_detect(const char * filename) +{ +#ifdef HAVE_ZLIB_H + gzFile fp_gz = 0; +#endif + +#ifdef HAVE_BZLIB_H + BZFILE * fp_bz = 0; +#endif + + int format; + + FILE * fp = fopen(filename, "rb"); + if (!fp) + fatal("Error: Unable to open file for reading (%s)", filename); + + /* detect compression (plain, gzipped or bzipped) */ + + unsigned char magic[2]; + format = FORMAT_PLAIN; + if (fread(&magic, 1, 2, fp) >= 2) + { + if (!memcmp(magic, MAGIC_GZIP, 2)) + format = FORMAT_GZIP; + else if (!memcmp(magic, MAGIC_BZIP, 2)) + format = FORMAT_BZIP; + } + + rewind(fp); + + if (format == FORMAT_GZIP) + { + /* GZIP: Close ordinary file and open again as gzipped file */ +#ifdef HAVE_ZLIB_H + fclose(fp); + if (! (fp_gz = gzopen(filename, "rb"))) + fatal("Unable to open gzip compressed file (%s)", filename); +#else + fatal("Files compressed with gzip are not supported"); +#endif + } + + if (format == FORMAT_BZIP) + { + /* BZIP2: Keep original file open, then open as bzipped file as well */ +#ifdef HAVE_ZLIB_H + int bzError; + if (! (fp_bz = BZ2_bzReadOpen(& bzError, fp, + BZ_VERBOSE_0, BZ_MORE_MEM, NULL, 0))) + fatal("Unable to open bzip2 compressed file (%s)", filename); +#else + fatal("Files compressed with bzip2 are not supported"); +#endif + } + + /* read one char and see if it starts with > or @ */ + + const int BUFFERLEN = 1; + char buffer[BUFFERLEN]; + + int bytes_read = 0; + +#ifdef HAVE_BZLIB_H + int bzError = 0; +#endif + + switch(format) + { + case FORMAT_PLAIN: + bytes_read = fread(buffer, + 1, + BUFFERLEN, + fp); + break; + + case FORMAT_GZIP: +#ifdef HAVE_ZLIB_H + bytes_read = gzread(fp_gz, + buffer, + BUFFERLEN); + if (bytes_read < 0) + fatal("Error reading gzip compressed file (%s)", filename); + break; +#endif + + case FORMAT_BZIP: +#ifdef HAVE_BZLIB_H + bytes_read = BZ2_bzRead(& bzError, + fp_bz, + buffer, + BUFFERLEN); + if ((bytes_read < 0) || + ! ((bzError == BZ_OK) || + (bzError == BZ_STREAM_END) || + (bzError == BZ_SEQUENCE_ERROR))) + fatal("Error reading bzip2 compressed file (%s)", filename); + break; +#endif + + default: + fatal("Internal error"); + } + + if (bytes_read < BUFFERLEN) + fatal("Error reading file (%s)", filename); + + int filetype = 0; + if (buffer[0] == '>') + filetype = 1; + else if (buffer[0] == '@') + filetype = 2; + + /* close files */ + +#ifdef HAVE_BZLIB_H + int bz_error; +#endif + + switch(format) + { + case FORMAT_PLAIN: + fclose(fp); + fp = 0; + break; + + case FORMAT_GZIP: +#ifdef HAVE_ZLIB_H + gzclose(fp_gz); + fp_gz = 0; + break; +#endif + + case FORMAT_BZIP: +#ifdef HAVE_BZLIB_H + BZ2_bzReadClose(&bz_error, fp_bz); + fp_bz = 0; + break; +#endif + + default: + fatal("Internal error"); + } + + return filetype; +} diff --git a/source/vsearch_src/fastxdetect.h b/source/vsearch_src/fastxdetect.h new file mode 100644 index 00000000..f74c0eba --- /dev/null +++ b/source/vsearch_src/fastxdetect.h @@ -0,0 +1,61 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +int fastx_detect(const char * filename); diff --git a/source/vsearch_src/linmemalign.cc b/source/vsearch_src/linmemalign.cc new file mode 100644 index 00000000..2711ef05 --- /dev/null +++ b/source/vsearch_src/linmemalign.cc @@ -0,0 +1,708 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* + + Compute the optimal global alignment of two sequences + in linear space using the divide and conquer method. + + These functions are based on the following articles: + - Hirschberg (1975) Comm ACM 18:341-343 + - Myers & Miller (1988) CABIOS 4:11-17 + + The method has been adapted for the use of different + gap penalties for query/target/left/interior/right gaps. + + scorematrix consists of 16x16 long integers + + Sequences and alignment matrix: + A/a/i/query/q/downwards/vertical/top/bottom + B/b/j/target/t/rightwards/horizontal/left/right + + f corresponds to score ending with gap in A/query + EE corresponds to score ending with gap in B/target + +*/ + +LinearMemoryAligner::LinearMemoryAligner() +{ + scorematrix = 0; + + cigar_alloc = 0; + cigar_string = 0; + + vector_alloc = 0; + HH = 0; + EE = 0; + XX = 0; + YY = 0; +} + +LinearMemoryAligner::~LinearMemoryAligner() +{ + if (cigar_string) + free(cigar_string); + if (HH) + free(HH); + if (EE) + free(EE); + if (XX) + free(XX); + if (YY) + free(YY); +} + +long * LinearMemoryAligner::scorematrix_create(long match, long mismatch) +{ + long * newscorematrix = (long*) xmalloc(16*16*sizeof(long)); + + for(int i=0; i<16; i++) + for(int j=0; j<16; j++) + { + long value; + if ((i==0) || (j==0) || (i>4) || (j>4)) + value = 0; + else if (i==j) + value = match; + else + value = mismatch; + newscorematrix[16*i+j] = value; + } + return newscorematrix; +} + +void LinearMemoryAligner::alloc_vectors(size_t x) +{ + if (vector_alloc < x) + { + vector_alloc = x; + + if (HH) + free(HH); + if (EE) + free(EE); + if (XX) + free(XX); + if (YY) + free(YY); + + HH = (long*) xmalloc(vector_alloc * (sizeof(long))); + EE = (long*) xmalloc(vector_alloc * (sizeof(long))); + XX = (long*) xmalloc(vector_alloc * (sizeof(long))); + YY = (long*) xmalloc(vector_alloc * (sizeof(long))); + } +} + +void LinearMemoryAligner::cigar_flush() +{ + if (op_run > 0) + { + while (1) + { + /* try writing string until enough memory has been allocated */ + + long rest = cigar_alloc - cigar_length; + int n; + if (op_run > 1) + n = snprintf(cigar_string + cigar_length, + rest, + "%ld%c", op_run, op); + else + n = snprintf(cigar_string + cigar_length, + rest, + "%c", op); + if (n < 0) + { + fatal("snprintf returned a negative number.\n"); + } + else if (n >= rest) + { + cigar_alloc += MAX(n - rest + 1, 64); + cigar_string = (char*) xrealloc(cigar_string, cigar_alloc); + } + else + { + cigar_length += n; + break; + } + } + } +} + +void LinearMemoryAligner::cigar_add(char _op, long run) + { + if (op == _op) + op_run += run; + else + { + cigar_flush(); + op = _op; + op_run = run; + } + } + +void LinearMemoryAligner::show_matrix() +{ + for(int i=0; i<16; i++) + { + printf("%2d:", i); + for(int j=0; j<16; j++) + printf(" %2ld", scorematrix[16*i+j]); + printf("\n"); + } +} + +void LinearMemoryAligner::diff(long a_start, + long b_start, + long a_len, + long b_len, + bool gap_b_left, /* gap open left of b */ + bool gap_b_right, /* gap open right of b */ + bool a_left, /* includes left end of a */ + bool a_right, /* includes right end of a */ + bool b_left, /* includes left end of b */ + bool b_right) /* includes right end of b */ +{ + if (b_len == 0) + { + /* B and possibly A is empty */ + if (a_len > 0) + { + // Delete a_len from A + // AAA + // --- + + cigar_add('D', a_len); + } + } + else if (a_len == 0) + { + /* A is empty, B is not */ + + // Delete b_len from B + // --- + // BBB + + cigar_add('I', b_len); + } + else if (a_len == 1) + { + /* + Convert 1 symbol from A to b_len symbols from B + b_len >= 1 + */ + + + long MaxScore; + long best; + + long Score = 0; + + /* First possibility */ + + // Delete 1 from A, Insert b_len from B + // A---- + // -BBBB + + /* gap penalty for gap in B of length 1 */ + + if (! gap_b_left) + Score -= b_left ? go_t_l : go_t_i; + + Score -= b_left ? ge_t_l : ge_t_i; + + /* gap penalty for gap in A of length b_len */ + + Score -= a_right ? go_q_r + b_len * ge_q_r : go_q_i + b_len * ge_q_i; + + MaxScore = Score; + best = -1; + + + /* Second possibility */ + + // Insert b_len from B, Delete 1 from A + // ----A + // BBBB- + + /* gap penalty for gap in A of length b_len */ + + Score -= a_left ? go_q_l + b_len * ge_q_l : go_q_i + b_len * ge_q_i; + + /* gap penalty for gap in B of length 1 */ + + if (! gap_b_right) + Score -= b_right ? go_t_r : go_t_i; + + Score -= b_right ? ge_t_r : ge_t_i; + + if (Score > MaxScore) + { + MaxScore = Score; + best = b_len; + } + + + /* Third possibility */ + + for (long j = 0; j < b_len; j++) + { + // Insert zero or more from B, replace 1, insert rest of B + // -A-- + // BBBB + + Score = 0; + + if (j > 0) + Score -= a_left ? go_q_l + j * ge_q_l : go_q_i + j * ge_q_i; + + Score += subst_score(a_start, b_start + j); + + if (j < b_len - 1) + Score -= a_right ? + go_q_r + (b_len-1-j) * ge_q_r : + go_q_i + (b_len-1-j) * ge_q_i; + + if (Score > MaxScore) + { + MaxScore = Score; + best = j; + } + } + + if (best == -1) + { + cigar_add('D', 1); + cigar_add('I', b_len); + } + else if (best == b_len) + { + cigar_add('I', b_len); + cigar_add('D', 1); + } + else + { + if (best > 0) + cigar_add('I', best); + cigar_add('M', 1); + if (best < b_len - 1) + cigar_add('I', b_len - 1 - best); + } + } + else + { + /* a_len >= 2, b_len >= 1 */ + + long I = a_len / 2; + long i, j; + + // Compute HH & EE in forward phase + // Upper part + + /* initialize HH and EE for values corresponding to + empty seq A vs B of j symbols, + i.e. a gap of length j in A */ + + HH[0] = 0; + EE[0] = 0; + + for (j = 1; j <= b_len; j++) + { + HH[j] = - (a_left ? go_q_l + j * ge_q_l : go_q_i + j * ge_q_i); + EE[j] = LONG_MIN; + } + + /* compute matrix */ + + for (i = 1; i <= I; i++) + { + long p = HH[0]; + + long h = - (b_left ? + (gap_b_left ? 0 : go_t_l) + i * ge_t_l : + (gap_b_left ? 0 : go_t_i) + i * ge_t_i); + + HH[0] = h; + long f = LONG_MIN; + + for (j = 1; j <= b_len; j++) + { + f = MAX(f, h - go_q_i) - ge_q_i; + if (b_right && (j==b_len)) + EE[j] = MAX(EE[j], HH[j] - go_t_r) - ge_t_r; + else + EE[j] = MAX(EE[j], HH[j] - go_t_i) - ge_t_i; + + h = p + subst_score(a_start + i - 1, b_start + j - 1); + + if (f > h) + h = f; + if (EE[j] > h) + h = EE[j]; + p = HH[j]; + HH[j] = h; + } + } + + EE[0] = HH[0]; + + // Compute XX & YY in reverse phase + // Lower part + + /* initialize XX and YY */ + + XX[0] = 0; + YY[0] = 0; + + for (j = 1; j <= b_len; j++) + { + XX[j] = - (a_right ? go_q_r + j * ge_q_r : go_q_i + j * ge_q_i); + YY[j] = LONG_MIN; + } + + /* compute matrix */ + + for (i = 1; i <= a_len - I; i++) + { + long p = XX[0]; + + long h = - (b_right ? + (gap_b_right ? 0 : go_t_r) + i * ge_t_r : + (gap_b_right ? 0 : go_t_i) + i * ge_t_i); + XX[0] = h; + long f = LONG_MIN; + + for (j = 1; j <= b_len; j++) + { + f = MAX(f, h - go_q_i) - ge_q_i; + if (b_left && (j==b_len)) + YY[j] = MAX(YY[j], XX[j] - go_t_l) - ge_t_l; + else + YY[j] = MAX(YY[j], XX[j] - go_t_i) - ge_t_i; + + h = p + subst_score(a_start + a_len - i, b_start + b_len - j); + + if (f > h) + h = f; + if (YY[j] > h) + h = YY[j]; + p = XX[j]; + XX[j] = h; + } + } + + YY[0] = XX[0]; + + + /* find maximum score along division line */ + + long MaxScore0 = LONG_MIN; + long best0 = -1; + + /* solutions with diagonal at break */ + + for (j=0; j <= b_len; j++) + { + long Score = HH[j] + XX[b_len - j]; + + if (Score > MaxScore0) + { + MaxScore0 = Score; + best0 = j; + } + } + + long MaxScore1 = LONG_MIN; + long best1 = -1; + + /* solutions that end with a gap in b from both ends at break */ + + for (j=0; j <= b_len; j++) + { + long g; + if (b_left && (j==0)) + g = go_t_l; + else if (b_right && (j==b_len)) + g = go_t_r; + else + g = go_t_i; + + long Score = EE[j] + YY[b_len - j] + g; + + if (Score > MaxScore1) + { + MaxScore1 = Score; + best1 = j; + } + } + + long P; + long best; + + if (MaxScore0 > MaxScore1) + { + P = 0; + best = best0; + } + else if (MaxScore1 > MaxScore0) + { + P = 1; + best = best1; + } + else + { + if (best0 <= best1) + { + P = 0; + best = best0; + } + else + { + P = 1; + best = best1; + } + } + + /* recursively compute upper left and lower right parts */ + + if (P == 0) + { + diff(a_start, b_start, + I, best, + gap_b_left, false, + a_left, false, + b_left, b_right && (best == b_len)); + + diff(a_start + I, b_start + best, + a_len - I, b_len - best, + false, gap_b_right, + false, a_right, + b_left && (best == 0), b_right); + } + else if (P == 1) + { + diff(a_start, b_start, + I - 1, best, + gap_b_left, true, + a_left, false, + b_left, b_right && (best == b_len)); + + cigar_add('D', 2); + + diff(a_start + I + 1, b_start + best, + a_len - I - 1, b_len - best, + true, gap_b_right, + false, a_right, + b_left && (best == 0), b_right); + } + } +} + +void LinearMemoryAligner::set_parameters(long * _scorematrix, + long _gap_open_query_left, + long _gap_open_target_left, + long _gap_open_query_interior, + long _gap_open_target_interior, + long _gap_open_query_right, + long _gap_open_target_right, + long _gap_extension_query_left, + long _gap_extension_target_left, + long _gap_extension_query_interior, + long _gap_extension_target_interior, + long _gap_extension_query_right, + long _gap_extension_target_right) +{ + scorematrix = _scorematrix; + + /* a = query/q b = t/target */ + + go_q_l = _gap_open_query_left; + go_t_l = _gap_open_target_left; + go_q_i = _gap_open_query_interior; + go_t_i = _gap_open_target_interior; + go_q_r = _gap_open_query_right; + go_t_r = _gap_open_target_right; + ge_q_l = _gap_extension_query_left; + ge_t_l = _gap_extension_target_left; + ge_q_i = _gap_extension_query_interior; + ge_t_i = _gap_extension_target_interior; + ge_q_r = _gap_extension_query_right; + ge_t_r = _gap_extension_target_right; + + q = _gap_open_query_interior; + r = _gap_extension_query_interior; +} + + + +char * LinearMemoryAligner::align(char * _a_seq, + char * _b_seq, + long a_len, + long b_len) +{ + /* copy parameters */ + a_seq = _a_seq; + b_seq = _b_seq; + + /* init cigar operations */ + op = 0; + op_run = 0; + cigar_length = 0; + + /* allocate enough memory for vectors */ + alloc_vectors(b_len+1); + + /* perform alignment */ + diff(0, 0, a_len, b_len, 0, 0, true, true, true, true); + + /* ensure entire cigar has been written */ + cigar_flush(); + + /* return cigar */ + return cigar_string; +} + +void LinearMemoryAligner::alignstats(char * cigar, + char * _a_seq, + char * _b_seq, + long * _nwscore, + long * _nwalignmentlength, + long * _nwmatches, + long * _nwmismatches, + long * _nwgaps) +{ + a_seq = _a_seq; + b_seq = _b_seq; + + long nwscore = 0; + long nwalignmentlength = 0; + long nwmatches = 0; + long nwmismatches = 0; + long nwgaps = 0; + + long a_pos = 0; + long b_pos = 0; + + char * p = cigar; + + long g; + + while (*p) + { + long run = 1; + int scanlength = 0; + sscanf(p, "%ld%n", &run, &scanlength); + p += scanlength; + switch (*p++) + { + case 'M': + nwalignmentlength += run; + for(long k=0; k, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +class LinearMemoryAligner +{ + char op; + long op_run; + long cigar_alloc; + long cigar_length; + char * cigar_string; + + char * a_seq; + char * b_seq; + + long * scorematrix; + + long q; + long r; + + /* gap penalties for open/extension query/target left/interior/right */ + long go_q_l; + long go_t_l; + long go_q_i; + long go_t_i; + long go_q_r; + long go_t_r; + long ge_q_l; + long ge_t_l; + long ge_q_i; + long ge_t_i; + long ge_q_r; + long ge_t_r; + + size_t vector_alloc; + + long * HH; + long * EE; + long * XX; + long * YY; + + void cigar_flush(); + + void cigar_add(char _op, long run); + + inline long subst_score(long x, long y) + { + /* return substitution score for replacing symbol at position x in a + with symbol at position y in b */ + return scorematrix[chrmap_4bit[(int)(b_seq[y])] * 16 + + chrmap_4bit[(int)(a_seq[x])]]; + } + + void diff(long a_start, + long b_start, + long a_len, + long b_len, + bool gap_b_left, /* gap open left of b */ + bool gap_b_right, /* gap open right of b */ + bool a_left, /* includes left end of a */ + bool a_right, /* includes right end of a */ + bool b_left, /* includes left end of b */ + bool b_right); /* includes right end of b */ + + void alloc_vectors(size_t N); + + void show_matrix(); + +public: + + LinearMemoryAligner(); + + ~LinearMemoryAligner(); + + long * scorematrix_create(long match, long mismatch); + + void set_parameters(long * _scorematrix, + long _gap_open_query_left, + long _gap_open_target_left, + long _gap_open_query_interior, + long _gap_open_target_interior, + long _gap_open_query_right, + long _gap_open_target_right, + long _gap_extension_query_left, + long _gap_extension_target_left, + long _gap_extension_query_interior, + long _gap_extension_target_interior, + long _gap_extension_query_right, + long _gap_extension_target_right); + + char * align(char * _a_seq, + char * _b_seq, + long M, + long N); + + void alignstats(char * cigar, + char * a_seq, + char * b_seq, + long * nwscore, + long * nwalignmentlength, + long * nwmatches, + long * nwmismatches, + long * nwgaps); + +}; diff --git a/source/vsearch_src/maps.cc b/source/vsearch_src/maps.cc new file mode 100644 index 00000000..a955bb41 --- /dev/null +++ b/source/vsearch_src/maps.cc @@ -0,0 +1,402 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* + legal symbols: *abcdefghiklmnpqrstuvxyz (all except j and o), also upper case + fatal symbols: .- + fatal: ascii 0-26 except tab (9), newline (10 and 13), vt (11), formfeed (12) + stripped: !"#$&'()+,/0123456789:;<=>?@JO[\]^_`jo{|}~ and chrs 9-13, 127 + + includes both amino acid and nucleotide sequences, adapt to nt only +*/ + +char sym_nt_2bit[] = "ACGT"; +char sym_nt_4bit[] = "-ACGTRYSWKMDBHVN"; + +unsigned int char_fasta_action[256] = + { + /* + How to handle input characters for FASTA + + 0=stripped, 1=legal, 2=fatal, 3=silently stripped, 4=newline + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 4, 3, 3, 3, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 2, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 1, 1, 1, 1, 0, 0, 1, 1, 0, 0, 1, 0, 1, 1, 0, + 0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, + 0, 1, 1, 1, 1, 0, 0, 1, 1, 0, 0, 1, 0, 1, 1, 0, + 0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + +unsigned int char_fq_action_seq[256] = + { + /* + How to handle input characters for FASTQ: + All IUPAC characters are valid. + CR (^M) silently stripped. + LF is newline. + Rest is fatal + + 0=stripped, 1=legal, 2=fatal, 3=silently stripped, 4=newline + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 3, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 1, 1, 1, 1, 2, 2, 1, 1, 2, 2, 1, 2, 1, 1, 2, + 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, 2, 2, + 2, 1, 1, 1, 1, 2, 2, 1, 1, 2, 2, 1, 2, 1, 1, 2, + 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + }; + +unsigned int char_fq_action_qual[256] = + { + /* + Quality characters, any from 33 to 126 is valid. + CR (^M) silently stripped. + LF is newline. + Rest is fatal + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 3, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 + }; + +unsigned int chrmap_2bit[256] = + { + /* + + Map from ascii to 2-bit nucleotide code + + Aa: 0 + Cc: 1 + Gg: 2 + TtUu: 3 + All others: 0 + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 1, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 1, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + + +unsigned int chrmap_4bit[256] = + { + /* + + Map from ascii to 4-bit nucleotide code + + Aa: 1 + Cc: 2 + Gg: 3 + TtUu: 4 + Rr: 5 + Yy: 6 + Ss: 7 + Ww: 8 + Kk: 9 + Mm: 10 + Bb: 11 + Dd: 12 + Hh: 13 + Vv: 14 + Nn: 15 + Others: 0 + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 1, 11, 2, 12, 0, 0, 3, 13, 0, 0, 9, 0, 10, 15, 0, + 0, 0, 5, 7, 4, 4, 14, 8, 0, 6, 0, 0, 0, 0, 0, 0, + 0, 1, 11, 2, 12, 0, 0, 3, 13, 0, 0, 9, 0, 10, 15, 0, + 0, 0, 5, 7, 4, 4, 14, 8, 0, 6, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + }; + +unsigned int chrmap_masked[256] = + { + /* + + Should character be masked and not used for search ? + Mask everything but A, C, G, T and U. + All lower case letters are masked (soft masking). + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 + }; + + +char chrmap_complement[256] = + { + /* + + Map from ascii to ascii, complementary nucleotide + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','T','V','G','H','N','N','C','D','N','N','M','N','K','N','N', + 'N','N','Y','S','A','A','B','W','N','R','N','N','N','N','N','N', + 'N','t','v','g','h','N','N','c','d','N','N','m','N','k','n','N', + 'N','N','y','s','a','a','b','w','N','r','N','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' + }; + +char chrmap_normalize[256] = + { + /* + + Map from ascii to ascii + Convert to upper case nucleotide, and replace U by T + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','A','B','C','D','N','N','G','H','N','N','K','N','M','N','N', + 'N','N','R','S','T','T','V','W','N','Y','N','N','N','N','N','N', + 'N','A','B','C','D','N','N','G','H','N','N','K','N','M','N','N', + 'N','N','R','S','T','T','V','W','N','Y','N','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' + }; + +char chrmap_upcase[256] = + { + /* + + Map from ascii to ascii + Convert to upper case nucleotide + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','A','B','C','D','E','F','G','H','I','J','K','L','M','N','O', + 'P','Q','R','S','T','U','V','W','X','Y','Z','N','N','N','N','N', + 'N','A','B','C','D','E','F','G','H','I','J','K','L','M','N','O', + 'P','Q','R','S','T','U','V','W','X','Y','Z','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' + }; + +char chrmap_no_change[256] = + { + /* + + Map from ascii to ascii - no change + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','A','B','C','D','E','F','G','H','I','J','K','L','M','N','O', + 'P','Q','R','S','T','U','V','W','X','Y','Z','N','N','N','N','N', + 'N','a','b','c','d','e','f','g','h','i','j','k','l','m','n','o', + 'p','q','r','s','t','u','v','w','x','y','z','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', + 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' + }; diff --git a/source/vsearch_src/maps.h b/source/vsearch_src/maps.h new file mode 100644 index 00000000..b2309527 --- /dev/null +++ b/source/vsearch_src/maps.h @@ -0,0 +1,73 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +extern char sym_nt_2bit[5]; +extern char sym_nt_4bit[17]; + +extern unsigned int char_fasta_action[256]; +extern unsigned int char_fq_action_seq[256]; +extern unsigned int char_fq_action_qual[256]; +extern unsigned int chrmap_2bit[256]; +extern unsigned int chrmap_4bit[256]; +extern unsigned int chrmap_masked[256]; +extern char chrmap_complement[256]; +extern char chrmap_normalize[256]; +extern char chrmap_upcase[256]; +extern char chrmap_no_change[256]; diff --git a/source/vsearch_src/mask.cc b/source/vsearch_src/mask.cc new file mode 100644 index 00000000..466f2ad0 --- /dev/null +++ b/source/vsearch_src/mask.cc @@ -0,0 +1,245 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static int dust_word = 3; +static int dust_level = 20; +static int dust_window = 64; +static int dust_window2 = dust_window >> 1; +static int word_count = 1 << (dust_word << 1); +static int bitmask = word_count - 1; + +int wo(int len, const char *s, int *beg, int *end) +{ + int l1 = len - dust_word + 1 - 5; /* smallest possible region is 8 */ + if (l1 < 0) + return 0; + + int bestv = 0; + int besti = 0; + int bestj = 0; + int counts[word_count]; + int words[dust_window]; + int word = 0; + + for (int j = 0; j < len; j++) + { + word <<= 2; + word |= chrmap_2bit[(int)(s[j])]; + words[j] = word & bitmask; + } + + for (int i=0; i < l1; i++) + { + memset(counts, 0, sizeof(counts)); + + int sum = 0; + + for (int j = dust_word-1; j bestv) + { + bestv = v; + besti = i; + bestj = j; + } + } + counts[word]++; + } + } + + *beg = besti; + *end = besti + bestj; + + return bestv; +} + +void dust(char * m, int len) +{ + int a, b; + + /* make a local copy of the original sequence */ + char * s = (char*) alloca(len); + memcpy(s, m, len); + + for (int i=0; i < len; i += dust_window2) + { + int l = (len > i + dust_window) ? dust_window : len-i; + int v = wo(l, s+i, &a, &b); + + if (v > dust_level) + { + if (opt_hardmask) + for(int j=a+i; j<=b+i; j++) + m[j] = 'N'; + else + for(int j=a+i; j<=b+i; j++) + m[j] = s[j] | 0x20; + + if (b < dust_window2) + i += dust_window2 - b; + } + } +} + +static pthread_t * pthread; +static pthread_attr_t attr; +static pthread_mutex_t myMutex; +static int nextseq = 0; +static int seqcount = 0; + +void * dust_all_worker(void * vp) +{ + while(1) + { + pthread_mutex_lock(&myMutex); + int seqno = nextseq; + if (seqno < seqcount) + { + nextseq++; + progress_update(seqno); + pthread_mutex_unlock(&myMutex); + dust(db_getsequence(seqno), db_getsequencelen(seqno)); + } + else + { + pthread_mutex_unlock(&myMutex); + break; + } + } + return 0; +} + +void dust_all() +{ + progress_init("Masking", seqcount); + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); + + for(int t=0; t, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#define MASK_ERROR -1 +#define MASK_NONE 0 +#define MASK_DUST 1 +#define MASK_SOFT 2 + +void maskfasta(); +void dust(char * m, int len); +void hardmask(char * m, int len); +void dust_all(); +void hardmask_all(); + +} + + diff --git a/source/vsearch_src/md5.c b/source/vsearch_src/md5.c new file mode 100644 index 00000000..7d43a603 --- /dev/null +++ b/source/vsearch_src/md5.c @@ -0,0 +1,295 @@ +/* + * This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. + * MD5 Message-Digest Algorithm (RFC 1321). + * + * Homepage: + * http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 + * + * Author: + * Alexander Peslyak, better known as Solar Designer + * + * This software was written by Alexander Peslyak in 2001. No copyright is + * claimed, and the software is hereby placed in the public domain. + * In case this attempt to disclaim copyright and place the software in the + * public domain is deemed null and void, then the software is + * Copyright (c) 2001 Alexander Peslyak and it is hereby released to the + * general public under the following terms: + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted. + * + * There's ABSOLUTELY NO WARRANTY, express or implied. + * + * (This is a heavily cut-down "BSD license".) + * + * This differs from Colin Plumb's older public domain implementation in that + * no exactly 32-bit integer data type is required (any 32-bit or wider + * unsigned integer data type will do), there's no compile-time endianness + * configuration, and the function prototypes match OpenSSL's. No code from + * Colin Plumb's implementation has been reused; this comment merely compares + * the properties of the two independent implementations. + * + * The primary goals of this implementation are portability and ease of use. + * It is meant to be fast, but not as fast as possible. Some known + * optimizations are not included to reduce source code size and avoid + * compile-time configuration. + */ + +#ifndef HAVE_OPENSSL + +#include + +#include "md5.h" + +/* + * The basic MD5 functions. + * + * F and G are optimized compared to their RFC 1321 definitions for + * architectures that lack an AND-NOT instruction, just like in Colin Plumb's + * implementation. + */ +#define F(x, y, z) ((z) ^ ((x) & ((y) ^ (z)))) +#define G(x, y, z) ((y) ^ ((z) & ((x) ^ (y)))) +#define H(x, y, z) ((x) ^ (y) ^ (z)) +#define I(x, y, z) ((y) ^ ((x) | ~(z))) + +/* + * The MD5 transformation for all four rounds. + */ +#define STEP(f, a, b, c, d, x, t, s) \ + (a) += f((b), (c), (d)) + (x) + (t); \ + (a) = (((a) << (s)) | (((a) & 0xffffffff) >> (32 - (s)))); \ + (a) += (b); + +/* + * SET reads 4 input bytes in little-endian byte order and stores them + * in a properly aligned word in host byte order. + * + * The check for little-endian architectures that tolerate unaligned + * memory accesses is just an optimization. Nothing will break if it + * doesn't work. + */ +#if defined(__i386__) || defined(__x86_64__) || defined(__vax__) +#define SET(n) \ + (*(MD5_u32plus *)&ptr[(n) * 4]) +#define GET(n) \ + SET(n) +#else +#define SET(n) \ + (ctx->block[(n)] = \ + (MD5_u32plus)ptr[(n) * 4] | \ + ((MD5_u32plus)ptr[(n) * 4 + 1] << 8) | \ + ((MD5_u32plus)ptr[(n) * 4 + 2] << 16) | \ + ((MD5_u32plus)ptr[(n) * 4 + 3] << 24)) +#define GET(n) \ + (ctx->block[(n)]) +#endif + +/* + * This processes one or more 64-byte data blocks, but does NOT update + * the bit counters. There are no alignment requirements. + */ +static void *body(MD5_CTX *ctx, void *data, unsigned long size) +{ + unsigned char *ptr; + MD5_u32plus a, b, c, d; + MD5_u32plus saved_a, saved_b, saved_c, saved_d; + + ptr = data; + + a = ctx->a; + b = ctx->b; + c = ctx->c; + d = ctx->d; + + do { + saved_a = a; + saved_b = b; + saved_c = c; + saved_d = d; + +/* Round 1 */ + STEP(F, a, b, c, d, SET(0), 0xd76aa478, 7) + STEP(F, d, a, b, c, SET(1), 0xe8c7b756, 12) + STEP(F, c, d, a, b, SET(2), 0x242070db, 17) + STEP(F, b, c, d, a, SET(3), 0xc1bdceee, 22) + STEP(F, a, b, c, d, SET(4), 0xf57c0faf, 7) + STEP(F, d, a, b, c, SET(5), 0x4787c62a, 12) + STEP(F, c, d, a, b, SET(6), 0xa8304613, 17) + STEP(F, b, c, d, a, SET(7), 0xfd469501, 22) + STEP(F, a, b, c, d, SET(8), 0x698098d8, 7) + STEP(F, d, a, b, c, SET(9), 0x8b44f7af, 12) + STEP(F, c, d, a, b, SET(10), 0xffff5bb1, 17) + STEP(F, b, c, d, a, SET(11), 0x895cd7be, 22) + STEP(F, a, b, c, d, SET(12), 0x6b901122, 7) + STEP(F, d, a, b, c, SET(13), 0xfd987193, 12) + STEP(F, c, d, a, b, SET(14), 0xa679438e, 17) + STEP(F, b, c, d, a, SET(15), 0x49b40821, 22) + +/* Round 2 */ + STEP(G, a, b, c, d, GET(1), 0xf61e2562, 5) + STEP(G, d, a, b, c, GET(6), 0xc040b340, 9) + STEP(G, c, d, a, b, GET(11), 0x265e5a51, 14) + STEP(G, b, c, d, a, GET(0), 0xe9b6c7aa, 20) + STEP(G, a, b, c, d, GET(5), 0xd62f105d, 5) + STEP(G, d, a, b, c, GET(10), 0x02441453, 9) + STEP(G, c, d, a, b, GET(15), 0xd8a1e681, 14) + STEP(G, b, c, d, a, GET(4), 0xe7d3fbc8, 20) + STEP(G, a, b, c, d, GET(9), 0x21e1cde6, 5) + STEP(G, d, a, b, c, GET(14), 0xc33707d6, 9) + STEP(G, c, d, a, b, GET(3), 0xf4d50d87, 14) + STEP(G, b, c, d, a, GET(8), 0x455a14ed, 20) + STEP(G, a, b, c, d, GET(13), 0xa9e3e905, 5) + STEP(G, d, a, b, c, GET(2), 0xfcefa3f8, 9) + STEP(G, c, d, a, b, GET(7), 0x676f02d9, 14) + STEP(G, b, c, d, a, GET(12), 0x8d2a4c8a, 20) + +/* Round 3 */ + STEP(H, a, b, c, d, GET(5), 0xfffa3942, 4) + STEP(H, d, a, b, c, GET(8), 0x8771f681, 11) + STEP(H, c, d, a, b, GET(11), 0x6d9d6122, 16) + STEP(H, b, c, d, a, GET(14), 0xfde5380c, 23) + STEP(H, a, b, c, d, GET(1), 0xa4beea44, 4) + STEP(H, d, a, b, c, GET(4), 0x4bdecfa9, 11) + STEP(H, c, d, a, b, GET(7), 0xf6bb4b60, 16) + STEP(H, b, c, d, a, GET(10), 0xbebfbc70, 23) + STEP(H, a, b, c, d, GET(13), 0x289b7ec6, 4) + STEP(H, d, a, b, c, GET(0), 0xeaa127fa, 11) + STEP(H, c, d, a, b, GET(3), 0xd4ef3085, 16) + STEP(H, b, c, d, a, GET(6), 0x04881d05, 23) + STEP(H, a, b, c, d, GET(9), 0xd9d4d039, 4) + STEP(H, d, a, b, c, GET(12), 0xe6db99e5, 11) + STEP(H, c, d, a, b, GET(15), 0x1fa27cf8, 16) + STEP(H, b, c, d, a, GET(2), 0xc4ac5665, 23) + +/* Round 4 */ + STEP(I, a, b, c, d, GET(0), 0xf4292244, 6) + STEP(I, d, a, b, c, GET(7), 0x432aff97, 10) + STEP(I, c, d, a, b, GET(14), 0xab9423a7, 15) + STEP(I, b, c, d, a, GET(5), 0xfc93a039, 21) + STEP(I, a, b, c, d, GET(12), 0x655b59c3, 6) + STEP(I, d, a, b, c, GET(3), 0x8f0ccc92, 10) + STEP(I, c, d, a, b, GET(10), 0xffeff47d, 15) + STEP(I, b, c, d, a, GET(1), 0x85845dd1, 21) + STEP(I, a, b, c, d, GET(8), 0x6fa87e4f, 6) + STEP(I, d, a, b, c, GET(15), 0xfe2ce6e0, 10) + STEP(I, c, d, a, b, GET(6), 0xa3014314, 15) + STEP(I, b, c, d, a, GET(13), 0x4e0811a1, 21) + STEP(I, a, b, c, d, GET(4), 0xf7537e82, 6) + STEP(I, d, a, b, c, GET(11), 0xbd3af235, 10) + STEP(I, c, d, a, b, GET(2), 0x2ad7d2bb, 15) + STEP(I, b, c, d, a, GET(9), 0xeb86d391, 21) + + a += saved_a; + b += saved_b; + c += saved_c; + d += saved_d; + + ptr += 64; + } while (size -= 64); + + ctx->a = a; + ctx->b = b; + ctx->c = c; + ctx->d = d; + + return ptr; +} + +void MD5_Init(MD5_CTX *ctx) +{ + ctx->a = 0x67452301; + ctx->b = 0xefcdab89; + ctx->c = 0x98badcfe; + ctx->d = 0x10325476; + + ctx->lo = 0; + ctx->hi = 0; +} + +void MD5_Update(MD5_CTX *ctx, void *data, unsigned long size) +{ + MD5_u32plus saved_lo; + unsigned long used, free; + + saved_lo = ctx->lo; + if ((ctx->lo = (saved_lo + size) & 0x1fffffff) < saved_lo) + ctx->hi++; + ctx->hi += size >> 29; + + used = saved_lo & 0x3f; + + if (used) { + free = 64 - used; + + if (size < free) { + memcpy(&ctx->buffer[used], data, size); + return; + } + + memcpy(&ctx->buffer[used], data, free); + data = (unsigned char *)data + free; + size -= free; + body(ctx, ctx->buffer, 64); + } + + if (size >= 64) { + data = body(ctx, data, size & ~(unsigned long)0x3f); + size &= 0x3f; + } + + memcpy(ctx->buffer, data, size); +} + +void MD5_Final(unsigned char *result, MD5_CTX *ctx) +{ + unsigned long used, free; + + used = ctx->lo & 0x3f; + + ctx->buffer[used++] = 0x80; + + free = 64 - used; + + if (free < 8) { + memset(&ctx->buffer[used], 0, free); + body(ctx, ctx->buffer, 64); + used = 0; + free = 64; + } + + memset(&ctx->buffer[used], 0, free - 8); + + ctx->lo <<= 3; + ctx->buffer[56] = ctx->lo; + ctx->buffer[57] = ctx->lo >> 8; + ctx->buffer[58] = ctx->lo >> 16; + ctx->buffer[59] = ctx->lo >> 24; + ctx->buffer[60] = ctx->hi; + ctx->buffer[61] = ctx->hi >> 8; + ctx->buffer[62] = ctx->hi >> 16; + ctx->buffer[63] = ctx->hi >> 24; + + body(ctx, ctx->buffer, 64); + + result[0] = ctx->a; + result[1] = ctx->a >> 8; + result[2] = ctx->a >> 16; + result[3] = ctx->a >> 24; + result[4] = ctx->b; + result[5] = ctx->b >> 8; + result[6] = ctx->b >> 16; + result[7] = ctx->b >> 24; + result[8] = ctx->c; + result[9] = ctx->c >> 8; + result[10] = ctx->c >> 16; + result[11] = ctx->c >> 24; + result[12] = ctx->d; + result[13] = ctx->d >> 8; + result[14] = ctx->d >> 16; + result[15] = ctx->d >> 24; + + memset(ctx, 0, sizeof(*ctx)); +} + +#endif diff --git a/source/vsearch_src/md5.h b/source/vsearch_src/md5.h new file mode 100644 index 00000000..6f32ff63 --- /dev/null +++ b/source/vsearch_src/md5.h @@ -0,0 +1,53 @@ +/* Slightly modified for vsearch by Torbjorn Rognes, 29 Sep 2015 */ + +/* + * This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. + * MD5 Message-Digest Algorithm (RFC 1321). + * + * Homepage: + * http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 + * + * Author: + * Alexander Peslyak, better known as Solar Designer + * + * This software was written by Alexander Peslyak in 2001. No copyright is + * claimed, and the software is hereby placed in the public domain. + * In case this attempt to disclaim copyright and place the software in the + * public domain is deemed null and void, then the software is + * Copyright (c) 2001 Alexander Peslyak and it is hereby released to the + * general public under the following terms: + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted. + * + * There's ABSOLUTELY NO WARRANTY, express or implied. + * + * See md5.c for more information. + */ + +#ifndef __MD5_H +#define __MD5_H + +#ifdef __cplusplus +extern "C" { +#endif + +/* Any 32-bit or wider unsigned integer data type will do */ +typedef unsigned int MD5_u32plus; + +typedef struct { + MD5_u32plus lo, hi; + MD5_u32plus a, b, c, d; + unsigned char buffer[64]; + MD5_u32plus block[16]; +} MD5_CTX; + +extern void MD5_Init(MD5_CTX *ctx); +extern void MD5_Update(MD5_CTX *ctx, void *data, unsigned long size); +extern void MD5_Final(unsigned char *result, MD5_CTX *ctx); + +#ifdef __cplusplus +} +#endif + +#endif /* __MD5_H */ diff --git a/source/vsearch_src/minheap.cc b/source/vsearch_src/minheap.cc new file mode 100644 index 00000000..545eca12 --- /dev/null +++ b/source/vsearch_src/minheap.cc @@ -0,0 +1,261 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* implement a priority queue with a min heap binary array structure */ +/* elements with the lowest count should be at the top (root) */ + +int +elem_smaller(elem_t * a, elem_t * b) +{ + /* return 1 if a is smaller than b, 0 if equal or greater */ + if (a->count < b->count) + return 1; + else if (a->count > b->count) + return 0; + else if (a->length > b->length) + return 1; + else if (a->length < b->length) + return 0; + else if (a->seqno > b->seqno) + return 1; + else + return 0; +} + +int minheap_compare(const void * a, const void * b) +{ + elem_t * x = (elem_t*) a; + elem_t * y = (elem_t*) b; + + if (elem_smaller(x, y)) + return -1; + else + return +1; +} + +minheap_t * +minheap_init(int size) +{ + minheap_t * m = (minheap_t *) xmalloc(sizeof(minheap_t)); + m->alloc = size; + m->array = (elem_t *) xmalloc(size * sizeof(elem_t)); + m->count = 0; + return m; +} + +void +minheap_exit(minheap_t * m) +{ + free(m->array); + free(m); +} + +static int swaps = 0; + +void +minheap_replaceroot(minheap_t * m, elem_t tmp) +{ + /* remove the element at the root, then swap children up + to the root and insert tmp at suitable place */ + + /* start with root */ + int p = 0; + int c = 2*p+1; + + /* while at least one child */ + while (c < m->count) + { + /* if two children: swap with the one with smallest value */ + if ((c + 1 < m->count) && (elem_smaller(m->array + c + 1, m->array + c))) + c++; + + /* swap parent and child if child has lower value */ + if (elem_smaller(m->array + c, &tmp)) + { + m->array[p] = m->array[c]; + swaps++; + } + else + break; + + /* step down */ + p = c; + c = 2*p+1; + } + + m->array[p] = tmp; +} + + +void +minheap_add(minheap_t * m, elem_t * n) +{ + if (m->count < m->alloc) + { + /* space for another item at end; swap upwards */ + + int i = m->count++; + int p = (i-1)/2; + while ((i>0) && elem_smaller(n, m->array+p)) + { + m->array[i] = m->array[p]; + i = p; + p = (i-1)/2; + swaps++; + } + m->array[i] = *n; + } + else if (elem_smaller(m->array, n)) + { + /* replace the root if new element is larger than root */ + minheap_replaceroot(m, *n); + } +} + +#if 0 +inline int +minheap_isempty(minheap_t * m) +{ + return !m->count; +} + +inline void +minheap_empty(minheap_t * m) +{ + m->count = 0; +} +#endif + +elem_t +minheap_pop(minheap_t * m) +{ + /* return top element and restore order */ + static elem_t zero = {0,0,0}; + + if (m->count) + { + elem_t top = m->array[0]; + m->count--; + if (m->count) + { + elem_t tmp = m->array[m->count]; + minheap_replaceroot(m, tmp); + } + return top; + } + else + return zero; +} + +void +minheap_sort(minheap_t * m) +{ + qsort(m->array, m->count, sizeof(elem_t), minheap_compare); +} + +void +minheap_dump(minheap_t * m) +{ + for(int i=0; i < m->count; i++) + printf("%s%u", i>0 ? " " : "", m->array[i].count); + printf("\n"); +} + +elem_t +minheap_poplast(minheap_t * m) +{ + /* return top element and restore order */ + static elem_t zero = {0,0,0}; + + if (m->count) + return m->array[--m->count]; + else + return zero; +} + + +void +minheap_test() +{ + minheap_t * m = minheap_init(10000000); + + int samples = 10000000; + swaps = 0; + + for(int i=samples; i>=0; i--) + { + elem_t x = {(unsigned int)(random()),0,1}; + minheap_add(m, & x); + } + + minheap_sort(m); + + while(! minheap_isempty(m)) + { + elem_t x = minheap_poplast(m); + printf("%u\n", x.count); + } + + printf("Swaps: %d\n\n", swaps); + + minheap_exit(m); +} diff --git a/source/vsearch_src/minheap.h b/source/vsearch_src/minheap.h new file mode 100644 index 00000000..cd4debfd --- /dev/null +++ b/source/vsearch_src/minheap.h @@ -0,0 +1,92 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +typedef struct topscore +{ + unsigned int count; + unsigned int seqno; + unsigned int length; +} elem_t; + + +typedef struct minheap_s +{ + int alloc; + int count; + elem_t * array; +} minheap_t; + +inline int minheap_isempty(minheap_t * m) +{ + return !m->count; +} + +inline void minheap_empty(minheap_t * m) +{ + m->count = 0; +} + +elem_t minheap_poplast(minheap_t * m); +void minheap_sort(minheap_t * m); +minheap_t * minheap_init(int size); +void minheap_exit(minheap_t * m); +void minheap_add(minheap_t * m, elem_t * n); +elem_t minheap_pop(minheap_t * m); + diff --git a/source/vsearch_src/msa.cc b/source/vsearch_src/msa.cc new file mode 100644 index 00000000..e9a2b3a6 --- /dev/null +++ b/source/vsearch_src/msa.cc @@ -0,0 +1,436 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* Compute consensus sequence and msa of clustered sequences */ + +static char * aln; +static int alnpos; +static int * profile; + +void msa_add(char c) +{ + int * p = profile + 4 * alnpos; + + switch(toupper(c)) + { + case 'A': + p[0] += 12; + break; + case 'C': + p[1] += 12; + break; + case 'G': + p[2] += 12; + break; + case 'T': + case 'U': + p[3] += 12; + break; + case 'R': + p[0] += 6; + p[2] += 6; + break; + case 'Y': + p[1] += 6; + p[3] += 6; + break; + case 'S': + p[1] += 6; + p[2] += 6; + break; + case 'W': + p[0] += 6; + p[3] += 6; + break; + case 'K': + p[2] += 6; + p[3] += 6; + break; + case 'M': + p[0] += 6; + p[1] += 6; + break; + case 'B': + p[1] += 4; + p[2] += 4; + p[3] += 4; + break; + case 'D': + p[0] += 4; + p[2] += 4; + p[3] += 4; + break; + case 'H': + p[0] += 4; + p[1] += 4; + p[3] += 4; + break; + case 'V': + p[0] += 4; + p[1] += 4; + p[2] += 4; + break; + case 'N': + p[0] += 3; + p[1] += 3; + p[2] += 3; + p[3] += 3; + break; + } + + aln[alnpos++] = c; +} + +void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, + int cluster, + int target_count, struct msa_target_s * target_list, + long totalabundance, abundance_t * abundance_handle) +{ + int centroid_seqno = target_list[0].seqno; + int centroid_len = db_getsequencelen(centroid_seqno); + + /* find max insertions in front of each position in the centroid sequence */ + int * maxi = (int *) xmalloc((centroid_len + 1) * sizeof(int)); + memset(maxi, 0, (centroid_len + 1) * sizeof(int)); + + for(int j=1; j maxi[pos]) + maxi[pos] = run; + break; + } + } + } + + /* find total alignment length */ + int alnlen = 0; + for(int i=0; i < centroid_len+1; i++) + alnlen += maxi[i]; + alnlen += centroid_len; + + /* allocate memory for profile (for consensus) and aligned seq */ + profile = (int *) xmalloc(4 * sizeof(int) * alnlen); + memset(profile, 0, 4 * sizeof(int) * alnlen); + aln = (char *) xmalloc(alnlen+1); + char * cons = (char *) xmalloc(alnlen+1); + + /* Find longest target sequence on reverse strand and allocate buffer */ + long longest_reversed = 0; + for(int i=0; i < target_count; i++) + if (target_list[i].strand) + { + long len = db_getsequencelen(target_list[i].seqno); + if (len > longest_reversed) + longest_reversed = len; + } + char * rc_buffer = 0; + if (longest_reversed > 0) + rc_buffer = (char*) xmalloc(longest_reversed + 1); + + /* blank line before each msa */ + if (fp_msaout) + fprintf(fp_msaout, "\n"); + + for(int j=0; j%s%s\n", j ? "" : "*", + db_getheader(target_seqno)); + fprint_fasta_seq_only(fp_msaout, aln, alnlen, opt_fasta_width); + } + } + + if (rc_buffer) + free(rc_buffer); + + /* consensus */ + + int conslen = 0; + + /* Censor part of the consensus sequence outside the centroid sequence */ + + int left_censored = maxi[0]; + int right_censored = maxi[centroid_len]; + + for(int i=0; i= alnlen - right_censored)) + { + aln[i] = '+'; + } + else + { + /* find most common symbol */ + char best_sym = 0; + int best_count = -1; + int nongap_count = 0; + for(int c=0; c<4; c++) + { + int count = profile[4*i+c]; + if (count > best_count) + { + best_count = count; + best_sym = c; + } + nongap_count += count; + } + + int gap_count = 12 * target_count - nongap_count; + + if (best_count >= gap_count) + { + char sym = sym_nt_2bit[(int)best_sym]; + aln[i] = sym; + cons[conslen++] = sym; + } + else + aln[i] = '-'; + } + } + + aln[alnlen] = 0; + cons[conslen] = 0; + + if (fp_msaout) + { + fprint_fasta_hdr_only(fp_msaout, "consensus"); + fprint_fasta_seq_only(fp_msaout, aln, alnlen, opt_fasta_width); + } + + if (fp_consout) + { + if (opt_sizeout) + { + /* must remove old size info first */ + char * header_wo_size + = abundance_strip_size(abundance_handle, + db_getheader(centroid_seqno), + db_getheaderlen(centroid_seqno)); + fprintf(fp_consout, + ">centroid=%s;seqs=%d;size=%ld;", + header_wo_size, + target_count, + totalabundance); + free(header_wo_size); + } + else + fprintf(fp_consout, + ">centroid=%s;seqs=%d;", + db_getheader(centroid_seqno), + target_count); + + if (opt_clusterout_id) + fprintf(fp_consout, "clusterid=%d;", cluster); + + fprintf(fp_consout, "\n"); + + fprint_fasta_seq_only(fp_consout, cons, conslen, opt_fasta_width); + } + + if (fp_profile) + { + /* must remove old size info first */ + if (opt_sizeout) + { + char * header_wo_size + = abundance_strip_size(abundance_handle, + db_getheader(centroid_seqno), + db_getheaderlen(centroid_seqno)); + fprintf(fp_profile, + ">centroid=%s;seqs=%d;size=%ld;", + header_wo_size, + target_count, + totalabundance); + free(header_wo_size); + } + else + fprintf(fp_profile, + ">centroid=%s;seqs=%d;", + db_getheader(centroid_seqno), + target_count); + + if (opt_clusterout_id) + fprintf(fp_profile, "clusterid=%d;", cluster); + + fprintf(fp_profile, "\n"); + + for (int i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +struct msa_target_s +{ + int seqno; + char * cigar; + int strand; +}; + +void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, + int cluster, + int target_count, struct msa_target_s * target_list, + long totalabundance, abundance_t * abundance_handle); diff --git a/source/vsearch_src/results.cc b/source/vsearch_src/results.cc new file mode 100644 index 00000000..7409a0bc --- /dev/null +++ b/source/vsearch_src/results.cc @@ -0,0 +1,740 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +void results_show_fastapairs_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc) +{ + /* http://www.drive5.com/usearch/manual/fastapairs.html */ + + if (hp) + { + char * qrow = align_getrow(hp->strand ? rc : qsequence, + hp->nwalignment, + hp->nwalignmentlength, + 0); + fprint_fasta_hdr_only(fp, query_head); + fprint_fasta_seq_only(fp, qrow + hp->trim_q_left + hp->trim_t_left, + hp->internal_alignmentlength, 0); + free(qrow); + + char * trow = align_getrow(db_getsequence(hp->target), + hp->nwalignment, + hp->nwalignmentlength, + 1); + fprint_fasta_hdr_only(fp, db_getheader(hp->target)); + fprint_fasta_seq_only(fp, trow + hp->trim_q_left + hp->trim_t_left, + hp->internal_alignmentlength, 0); + free(trow); + + fprintf(fp, "\n"); + } +} + + +void results_show_blast6out_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc) +{ + + /* + http://www.drive5.com/usearch/manual/blast6out.html + + query label + target label + percent identity + alignment length + number of mismatches + number of gap opens + 1-based position of start in query + 1-based position of end in query + 1-based position of start in target + 1-based position of end in target + E-value + bit score + + Note that USEARCH shows 13 fields when there is no hit, + but only 12 when there is a hit. Fixed in VSEARCH. + */ + + if (hp) + { + int qstart, qend; + + if (hp->strand) + { + /* minus strand */ + qstart = qseqlen; + qend = 1; + } + else + { + /* plus strand */ + qstart = 1; + qend = qseqlen; + } + + fprintf(fp, + "%s\t%s\t%.1f\t%d\t%d\t%d\t%d\t%d\t%d\t%lu\t%d\t%d\n", + query_head, + db_getheader(hp->target), + hp->id, + hp->internal_alignmentlength, + hp->mismatches, + hp->internal_gaps, + qstart, + qend, + 1, + db_getsequencelen(hp->target), + -1, + 0); + } + else + { + fprintf(fp, "%s\t*\t0.0\t0\t0\t0\t0\t0\t0\t0\t-1\t0\n", query_head); + } +} + +void results_show_uc_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc) +{ + /* + http://www.drive5.com/usearch/manual/ucout.html + + Columns: + H/N + cluster no (0-based) (target sequence no) + sequence length (query) + percent identity + strand: + or - + 0 + 0 + compressed alignment, e.g. 9I92M14D + query label + target label + */ + + if (hp) + { + bool perfect = (hp->matches == qseqlen) && + (qseqlen = db_getsequencelen(hp->target)); + + fprintf(fp, + "H\t%d\t%ld\t%.1f\t%c\t0\t0\t%s\t%s\t%s\n", + hp->target, + qseqlen, + hp->id, + hp->strand ? '-' : '+', + perfect ? "=" : hp->nwalignment, + query_head, + db_getheader(hp->target)); + } + else + fprintf(fp, "N\t*\t*\t*\t.\t*\t*\t*\t%s\t*\n", query_head); +} + +void results_show_userout_one(FILE * fp, struct hit * hp, + char * query_head, + char * qsequence, long qseqlen, + char * rc) +{ + + /* + http://drive5.com/usearch/manual/userout.html + qlo, qhi, tlo, thi and raw are given more meaningful values here + */ + + for (int c = 0; c < userfields_requested_count; c++) + { + if (c) + fprintf(fp, "\t"); + + int field = userfields_requested[c]; + + char * tsequence = 0; + long tseqlen = 0; + char * t_head = 0; + + if (hp) + { + tsequence = db_getsequence(hp->target); + tseqlen = db_getsequencelen(hp->target); + t_head = db_getheader(hp->target); + } + + char * qrow; + char * trow; + + switch (field) + { + case 0: /* query */ + fprintf(fp, "%s", query_head); + break; + case 1: /* target */ + fprintf(fp, "%s", hp ? t_head : "*"); + break; + case 2: /* evalue */ + fprintf(fp, "-1"); + break; + case 3: /* id */ + fprintf(fp, "%.1f", hp ? hp->id : 0.0); + break; + case 4: /* pctpv */ + fprintf(fp, "%.1f", (hp && (hp->internal_alignmentlength > 0)) ? 100.0 * hp->matches / hp->internal_alignmentlength : 0.0); + break; + case 5: /* pctgaps */ + fprintf(fp, "%.1f", (hp && (hp->internal_alignmentlength > 0)) ? 100.0 * hp->internal_indels / hp->internal_alignmentlength : 0.0); + break; + case 6: /* pairs */ + fprintf(fp, "%d", hp ? hp->matches + hp->mismatches : 0); + break; + case 7: /* gaps */ + fprintf(fp, "%d", hp ? hp->internal_indels : 0); + break; + case 8: /* qlo */ + fprintf(fp, "%ld", hp ? (hp->strand ? qseqlen : 1) : 0); + break; + case 9: /* qhi */ + fprintf(fp, "%ld", hp ? (hp->strand ? 1 : qseqlen) : 0); + break; + case 10: /* tlo */ + fprintf(fp, "%d", hp ? 1 : 0); + break; + case 11: /* thi */ + fprintf(fp, "%ld", tseqlen); + break; + case 12: /* pv */ + fprintf(fp, "%d", hp ? hp->matches : 0); + break; + case 13: /* ql */ + fprintf(fp, "%ld", qseqlen); + break; + case 14: /* tl */ + fprintf(fp, "%ld", hp ? tseqlen : 0); + break; + case 15: /* qs */ + fprintf(fp, "%ld", qseqlen); + break; + case 16: /* ts */ + fprintf(fp, "%ld", hp ? tseqlen : 0); + break; + case 17: /* alnlen */ + fprintf(fp, "%d", hp ? hp->internal_alignmentlength : 0); + break; + case 18: /* opens */ + fprintf(fp, "%d", hp ? hp->internal_gaps : 0); + break; + case 19: /* exts */ + fprintf(fp, "%d", hp ? hp->internal_indels - hp->internal_gaps : 0); + break; + case 20: /* raw */ + fprintf(fp, "%d", hp ? hp->nwscore : 0); + break; + case 21: /* bits */ + fprintf(fp, "%d", 0); + break; + case 22: /* aln */ + if (hp) + align_fprint_uncompressed_alignment(fp, hp->nwalignment); + break; + case 23: /* caln */ + if (hp) + fprintf(fp, "%s", hp->nwalignment); + break; + case 24: /* qstrand */ + if (hp) + fprintf(fp, "%c", hp->strand ? '-' : '+'); + break; + case 25: /* tstrand */ + if (hp) + fprintf(fp, "%c", '+'); + break; + case 26: /* qrow */ + if (hp) + { + qrow = align_getrow(hp->strand ? rc : qsequence, + hp->nwalignment, + hp->nwalignmentlength, + 0); + fprintf(fp, "%.*s", + (int)(hp->internal_alignmentlength), + qrow + hp->trim_q_left + hp->trim_t_left); + free(qrow); + } + break; + case 27: /* trow */ + if (hp) + { + trow = align_getrow(tsequence, + hp->nwalignment, + hp->nwalignmentlength, + 1); + fprintf(fp, "%.*s", + (int)(hp->internal_alignmentlength), + trow + hp->trim_q_left + hp->trim_t_left); + free(trow); + } + break; + case 28: /* qframe */ + fprintf(fp, "+0"); + break; + case 29: /* tframe */ + fprintf(fp, "+0"); + break; + case 30: /* mism */ + fprintf(fp, "%d", hp ? hp->mismatches : 0); + break; + case 31: /* ids */ + fprintf(fp, "%d", hp ? hp->matches : 0); + break; + case 32: /* qcov */ + fprintf(fp, "%.1f", + hp ? 100.0 * (hp->matches + hp->mismatches) / qseqlen : 0.0); + break; + case 33: /* tcov */ + fprintf(fp, "%.1f", + hp ? 100.0 * (hp->matches + hp->mismatches) / tseqlen : 0.0); + break; + case 34: /* id0 */ + fprintf(fp, "%.1f", hp ? hp->id0 : 0.0); + break; + case 35: /* id1 */ + fprintf(fp, "%.1f", hp ? hp->id1 : 0.0); + break; + case 36: /* id2 */ + fprintf(fp, "%.1f", hp ? hp->id2 : 0.0); + break; + case 37: /* id3 */ + fprintf(fp, "%.1f", hp ? hp->id3 : 0.0); + break; + case 38: /* id4 */ + fprintf(fp, "%.1f", hp ? hp->id4 : 0.0); + break; + + /* new internal alignment coordinates */ + + case 39: /* qilo */ + fprintf(fp, "%d", hp ? hp->trim_q_left + 1 : 0); + break; + case 40: /* qihi */ + fprintf(fp, "%ld", hp ? qseqlen - hp->trim_q_right : 0); + break; + case 41: /* tilo */ + fprintf(fp, "%d", hp ? hp->trim_t_left + 1 : 0); + break; + case 42: /* tihi */ + fprintf(fp, "%ld", hp ? tseqlen - hp->trim_t_right : 0); + break; + } + } + fprintf(fp, "\n"); +} + +void results_show_alnout(FILE * fp, + struct hit * hits, + int hitcount, + char * query_head, + char * qsequence, + long qseqlen, + char * rc) +{ + /* http://drive5.com/usearch/manual/alnout.html */ + + if (hitcount) + { + fprintf(fp, "\n"); + + fprintf(fp,"Query >%s\n", query_head); + fprintf(fp," %%Id TLen Target\n"); + + double top_hit_id = hits[0].id; + + for(int t = 0; t < hitcount; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + fprintf(fp,"%3.0f%% %6lu %s\n", + hp->id, + db_getsequencelen(hp->target), + db_getheader(hp->target)); + } + + for(int t = 0; t < hitcount; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + fprintf(fp,"\n"); + + + char * dseq = db_getsequence(hp->target); + long dseqlen = db_getsequencelen(hp->target); + + char dummy; + int qlenlen = snprintf(&dummy, 1, "%ld", qseqlen); + int tlenlen = snprintf(&dummy, 1, "%ld", dseqlen); + int numwidth = MAX(qlenlen, tlenlen); + + fprintf(fp," Query %*ldnt >%s\n", numwidth, + qseqlen, query_head); + fprintf(fp,"Target %*ldnt >%s\n", numwidth, + dseqlen, db_getheader(hp->target)); + + int rowlen = opt_rowlen == 0 ? qseqlen+dseqlen : opt_rowlen; + + align_show(fp, + qsequence, + qseqlen, + hp->trim_q_left, + "Qry", + dseq, + dseqlen, + hp->trim_t_left, + "Tgt", + hp->nwalignment + hp->trim_aln_left, + strlen(hp->nwalignment) + - hp->trim_aln_left - hp->trim_aln_right, + numwidth, + 3, + rowlen, + hp->strand); + + fprintf(fp, "\n%d cols, %d ids (%3.1f%%), %d gaps (%3.1f%%)\n", + hp->internal_alignmentlength, + hp->matches, + hp->id, + hp->internal_indels, + hp->internal_alignmentlength > 0 ? + 100.0 * hp->internal_indels / hp->internal_alignmentlength : + 0.0); + +#if 0 + fprintf(fp, "%d kmers, %d score, %d gap opens. %s\n", + hp->count, hp->nwscore, hp->nwgaps, + hp->accepted ? "accepted" : "not accepted"); +#endif + } + } + else if (opt_output_no_hits) + { + fprintf(fp, "\n"); + fprintf(fp,"Query >%s\n", query_head); + fprintf(fp,"No hits\n"); + } +} + +bool inline nucleotide_equal(char a, char b) +{ + return chrmap_4bit[(int)a] == chrmap_4bit[(int)b]; +} + +void build_sam_strings(char * alignment, + char * queryseq, + char * targetseq, + xstring * cigar, + xstring * md) +{ + /* + convert cigar to sam format: + add "1" to operations without run length + flip direction of indels in cigar string + + build MD-string with substitutions + */ + + cigar->empty(); + md->empty(); + + char * p = alignment; + char * e = p + strlen(p); + + int qpos = 0; + int tpos = 0; + + int matched = 0; + bool flag = 0; /* 1: MD string ends with a number */ + + while(p < e) + { + int run = 1; + int scanned = 0; + sscanf(p, "%d%n", & run, & scanned); + p += scanned; + char op = *p++; + + switch (op) + { + case 'M': + cigar->add_d(run); + cigar->add_c('M'); + + for(int i=0; iadd_d(matched); + matched = 0; + flag = 1; + } + + md->add_c(targetseq[tpos]); + flag = 0; + } + qpos++; + tpos++; + } + + break; + + case 'D': + cigar->add_d(run); + cigar->add_c('I'); + qpos += run; + break; + + case 'I': + cigar->add_d(run); + cigar->add_c('D'); + + if (!flag) + { + md->add_d(matched); + matched = 0; + flag = 1; + } + + md->add_c('^'); + for(int i=0; iadd_c(targetseq[tpos++]); + flag = 0; + break; + } + } + + if (!flag) + { + md->add_d(matched); + matched = 0; + flag = 1; + } +} + +void results_show_samheader(FILE * fp, + char * cmdline, + char * dbname) +{ + if (opt_samout && opt_samheader) + { + fprintf(fp, "@HD\tVN:1.0\tSO:unsorted\tGO:query\n"); + + for(unsigned long i=0; i 0) + { + double top_hit_id = hits[0].id; + + for(int t = 0; t < hitcount; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + /* + + */ + + xstring cigar; + xstring md; + + build_sam_strings(hp->nwalignment, + hp->strand ? rc : qsequence, + db_getsequence(hp->target), + & cigar, + & md); + + fprintf(fp, + "%s\t%u\t%s\t%lu\t%u\t%s\t%s\t%lu\t%lu\t%s\t%s\t" + "AS:i:%.0f\tXN:i:%d\tXM:i:%d\tXO:i:%d\t" + "XG:i:%d\tNM:i:%d\tMD:Z:%s\tYT:Z:%s\n", + query_head, + 0x10 * hp->strand | (t>0 ? 0x100 : 0), + db_getheader(hp->target), + 1UL, + 255, + cigar.get_string(), + "*", + 0UL, + 0UL, + hp->strand ? rc : qsequence, + "*", + hp->id, + 0, + hp->mismatches, + hp->internal_gaps, + hp->internal_indels, + hp->mismatches + hp->internal_indels, + md.get_string(), + "UU"); + } + } + else if (opt_output_no_hits) + { + fprintf(fp, + "%s\t%u\t%s\t%lu\t%u\t%s\t%s\t%lu\t%lu\t%s\t%s\n", + query_head, + 0x04, + "*", + 0UL, + 255, + "*", + "*", + 0UL, + 0UL, + qsequence, + "*"); + } +} diff --git a/source/vsearch_src/results.h b/source/vsearch_src/results.h new file mode 100644 index 00000000..7eaa764c --- /dev/null +++ b/source/vsearch_src/results.h @@ -0,0 +1,107 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void results_show_alnout(FILE * fp, + struct hit * hits, + int hitcount, + char * query_head, + char * qsequence, + long qseqlen, + char * rc); + +void results_show_blast6out_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc); + +void results_show_uc_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc); + +void results_show_userout_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc); + +void results_show_fastapairs_one(FILE * fp, + struct hit * hp, + char * query_head, + char * qsequence, + long qseqlen, + char * rc); + +void results_show_samheader(FILE * fp, + char * cmdline, + char * dbname); + +void results_show_samout(FILE * fp, + struct hit * hits, + int hitcount, + char * query_head, + char * qsequence, + long qseqlen, + char * rc); diff --git a/source/vsearch_src/search.cc b/source/vsearch_src/search.cc new file mode 100644 index 00000000..e0bfe2b4 --- /dev/null +++ b/source/vsearch_src/search.cc @@ -0,0 +1,661 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static struct searchinfo_s * si_plus; +static struct searchinfo_s * si_minus; +static pthread_t * pthread; + +/* global constants/data, no need for synchronization */ +static int tophits; /* the maximum number of hits to keep */ +static int seqcount; /* number of database sequences */ +static pthread_attr_t attr; +static fasta_handle query_fasta_h; + +/* global data protected by mutex */ +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; +static int qmatches; +static int queries; +static int * dbmatched; +static FILE * fp_samout = 0; +static FILE * fp_alnout = 0; +static FILE * fp_userout = 0; +static FILE * fp_blast6out = 0; +static FILE * fp_uc = 0; +static FILE * fp_fastapairs = 0; +static FILE * fp_matched = 0; +static FILE * fp_notmatched = 0; +static FILE * fp_dbmatched = 0; +static FILE * fp_dbnotmatched = 0; + +void search_output_results(int hit_count, + struct hit * hits, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ + pthread_mutex_lock(&mutex_output); + + /* show results */ + long toreport = MIN(opt_maxhits, hit_count); + + if (fp_alnout) + results_show_alnout(fp_alnout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_samout) + results_show_samout(fp_samout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (toreport) + { + double top_hit_id = hits[0].id; + + for(int t = 0; t < toreport; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + if (fp_fastapairs) + results_show_fastapairs_one(fp_fastapairs, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_uc) + if ((t==0) || opt_uc_allhits) + results_show_uc_one(fp_uc, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + } + else if (opt_output_no_hits) + { + if (fp_uc) + results_show_uc_one(fp_uc, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + + if (hit_count) + { + if (opt_matched) + { + fprintf(fp_matched, + ">%s\n", + query_head); + fprint_fasta_seq_only(fp_matched, + qsequence, + qseqlen, + opt_fasta_width); + } + } + else + { + if (opt_notmatched) + { + fprintf(fp_notmatched, + ">%s\n", + query_head); + fprint_fasta_seq_only(fp_notmatched, + qsequence, + qseqlen, + opt_fasta_width); + } + } + + /* update matching db sequences */ + for (int i=0; i < hit_count; i++) + if (hits[i].accepted) + dbmatched[hits[i].target]++; + + pthread_mutex_unlock(&mutex_output); +} + +int search_query(long t) +{ + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_minus+t : si_plus+t; + + /* mask query */ + if (opt_qmask == MASK_DUST) + { + dust(si->qsequence, si->qseqlen); + } + else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) + { + hardmask(si->qsequence, si->qseqlen); + } + + /* perform search */ + search_onequery(si); + } + + struct hit * hits; + int hit_count; + + search_joinhits(si_plus + t, + opt_strand > 1 ? si_minus + t : 0, + & hits, + & hit_count); + + search_output_results(hit_count, + hits, + si_plus[t].query_head, + si_plus[t].qseqlen, + si_plus[t].qsequence, + opt_strand > 1 ? si_minus[t].qsequence : 0); + + /* free memory for alignment strings */ + for(int i=0; iquery_head_len = query_head_len; + si->qseqlen = qseqlen; + si->query_no = query_no; + si->qsize = qsize; + si->strand = s; + + /* allocate more memory for header and sequence, if necessary */ + + if (si->query_head_len + 1 > si->query_head_alloc) + { + si->query_head_alloc = si->query_head_len + 2001; + si->query_head = (char*) + xrealloc(si->query_head, (size_t)(si->query_head_alloc)); + } + + if (si->qseqlen + 1 > si->seq_alloc) + { + si->seq_alloc = si->qseqlen + 2001; + si->qsequence = (char*) + xrealloc(si->qsequence, (size_t)(si->seq_alloc)); + } + } + + /* plus strand: copy header and sequence */ + strcpy(si_plus[t].query_head, qhead); + strcpy(si_plus[t].qsequence, qseq); + + /* get progress as amount of input file read */ + unsigned long progress = fasta_get_position(query_fasta_h); + + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); + + /* minus strand: copy header and reverse complementary sequence */ + if (opt_strand > 1) + { + strcpy(si_minus[t].query_head, si_plus[t].query_head); + reverse_complement(si_minus[t].qsequence, + si_plus[t].qsequence, + si_plus[t].qseqlen); + } + + int match = search_query(t); + + /* lock mutex for update of global data and output */ + pthread_mutex_lock(&mutex_output); + + /* update stats */ + queries++; + + if (match) + qmatches++; + + /* show progress */ + progress_update(progress); + + pthread_mutex_unlock(&mutex_output); + } + else + { + pthread_mutex_unlock(&mutex_input); + break; + } + } +} + +void search_thread_init(struct searchinfo_s * si) +{ + /* thread specific initialiation */ + si->uh = unique_init(); + si->kmers = (count_t *) xmalloc(seqcount * sizeof(count_t) + 32); + si->m = minheap_init(tophits); + si->hits = (struct hit *) xmalloc + (sizeof(struct hit) * (tophits) * opt_strand); + si->qsize = 1; + si->query_head_alloc = 0; + si->query_head = 0; + si->seq_alloc = 0; + si->qsequence = 0; +#ifdef COMPARENONVECTORIZED + si->nw = nw_init(); +#else + si->nw = 0; +#endif + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); +} + +void search_thread_exit(struct searchinfo_s * si) +{ + /* thread specific clean up */ + search16_exit(si->s); +#ifdef COMPARENONVECTORIZED + nw_exit(si->nw); +#endif + unique_exit(si->uh); + free(si->hits); + minheap_exit(si->m); + free(si->kmers); + if (si->query_head) + free(si->query_head); + if (si->qsequence) + free(si->qsequence); +} + + + +void * search_thread_worker(void * vp) +{ + long t = (long) vp; + search_thread_run(t); + return 0; +} + +void search_thread_worker_run() +{ + /* initialize threads, start them, join them and return */ + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* init and create worker threads, put them into stand-by mode */ + for(int t=0; t seqcount)) + opt_maxrejects = seqcount; + + if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) + opt_maxaccepts = seqcount; + + tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; + + if (tophits > seqcount) + tophits = seqcount; +} + +void search_done() +{ + /* clean up, global */ + dbindex_free(); + db_free(); + if (opt_matched) + fclose(fp_matched); + if (opt_notmatched) + fclose(fp_notmatched); + if (opt_fastapairs) + fclose(fp_fastapairs); + if (fp_uc) + fclose(fp_uc); + if (fp_blast6out) + fclose(fp_blast6out); + if (fp_userout) + fclose(fp_userout); + if (fp_alnout) + fclose(fp_alnout); + if (fp_samout) + fclose(fp_samout); + show_rusage(); +} + +void usearch_global(char * cmdline, char * progheader) +{ + search_prep(cmdline, progheader); + + if (opt_dbmatched) + { + fp_dbmatched = fopen(opt_dbmatched, "w"); + if (! fp_dbmatched) + fatal("Unable to open dbmatched output file for writing"); + } + + if (opt_dbnotmatched) + { + fp_dbnotmatched = fopen(opt_dbnotmatched, "w"); + if (! fp_dbnotmatched) + fatal("Unable to open dbnotmatched output file for writing"); + } + + dbmatched = (int*) xmalloc(seqcount * sizeof(int*)); + memset(dbmatched, 0, seqcount * sizeof(int*)); + + /* prepare reading of queries */ + qmatches = 0; + queries = 0; + query_fasta_h = fasta_open(opt_usearch_global); + + /* allocate memory for thread info */ + si_plus = (struct searchinfo_s *) xmalloc(opt_threads * + sizeof(struct searchinfo_s)); + if (opt_strand > 1) + si_minus = (struct searchinfo_s *) xmalloc(opt_threads * + sizeof(struct searchinfo_s)); + else + si_minus = 0; + + pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); + + /* init mutexes for input and output */ + pthread_mutex_init(&mutex_input, NULL); + pthread_mutex_init(&mutex_output, NULL); + + progress_init("Searching", fasta_get_size(query_fasta_h)); + search_thread_worker_run(); + progress_done(); + + pthread_mutex_destroy(&mutex_output); + pthread_mutex_destroy(&mutex_input); + + free(pthread); + free(si_plus); + if (si_minus) + free(si_minus); + + fasta_close(query_fasta_h); + + if (!opt_quiet) + fprintf(stderr, "Matching query sequences: %d of %d (%.2f%%)\n", + qmatches, queries, 100.0 * qmatches / queries); + + if (opt_log) + fprintf(fp_log, "Matching query sequences: %d of %d (%.2f%%)\n", + qmatches, queries, 100.0 * qmatches / queries); + + if (opt_dbmatched || opt_dbnotmatched) + { + for(long i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void usearch_global(char * cmdline, char * progheader); diff --git a/source/vsearch_src/searchcore.cc b/source/vsearch_src/searchcore.cc new file mode 100644 index 00000000..1b05438e --- /dev/null +++ b/source/vsearch_src/searchcore.cc @@ -0,0 +1,757 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* per thread data */ + +inline int hit_compare_byid_typed(struct hit * x, struct hit * y) +{ + // high id, then low id + // early target, then late target + + if (x->rejected < y->rejected) + return -1; + else + if (x->rejected > y->rejected) + return +1; + else + if (x->rejected == 1) + return 0; + else + if (x->aligned > y->aligned) + return -1; + else + if (x->aligned < y->aligned) + return +1; + else + if (x->aligned == 0) + return 0; + else + if (x->id > y->id) + return -1; + else + if (x->id < y->id) + return +1; + else + if (x->target < y->target) + return -1; + else + if (x->target > y->target) + return +1; + else + return 0; +} + +inline int hit_compare_bysize_typed(struct hit * x, struct hit * y) +{ + // high abundance, then low abundance + // high id, then low id + // early target, then late target + + if (x->rejected < y->rejected) + return -1; + else + if (x->rejected > y->rejected) + return +1; + else + if (x->rejected == 1) + return 0; + else + if (x->aligned > y->aligned) + return -1; + else + if (x->aligned < y->aligned) + return +1; + else + if (x->aligned == 0) + return 0; + else + if (db_getabundance(x->target) > db_getabundance(y->target)) + return -1; + else + if (db_getabundance(x->target) < db_getabundance(y->target)) + return +1; + else + if (x->id > y->id) + return -1; + else + if (x->id < y->id) + return +1; + else + if (x->target < y->target) + return -1; + else + if (x->target > y->target) + return +1; + else + return 0; +} + +int hit_compare_byid(const void * a, const void * b) +{ + return hit_compare_byid_typed((struct hit *) a, (struct hit *) b); +} + +int hit_compare_bysize(const void * a, const void * b) +{ + return hit_compare_bysize_typed((struct hit *) a, (struct hit *) b); +} + +inline void topscore_insert(int i, struct searchinfo_s * si) +{ + count_t count = si->kmers[i]; + + /* ignore sequences with very few kmer matches */ + + if (count < MINMATCHSAMPLECOUNT) + return; + + if (count < si->kmersamplecount / MINMATCHSAMPLEFREQ) + return; + + unsigned int seqno = dbindex_getmapping(i); + unsigned int length = db_getsequencelen(seqno); + + elem_t novel; + novel.count = count; + novel.seqno = seqno; + novel.length = length; + + minheap_add(si->m, & novel); +} + +void _mm_print_epi8(__m128i x) +{ + unsigned char * y = (unsigned char*)&x; + for (int i=0; i<16; i++) + printf("%s%02x", (i>0?" ":""), y[15-i]); +} + +void search_topscores(struct searchinfo_s * si) +{ + /* + Count the kmer hits in each database sequence and + make a sorted list of a given number (th) + of the database sequences with the highest number of matching kmers. + These are stored in the min heap array. + */ + + /* count kmer hits in the database sequences */ + int indexed_count = dbindex_getcount(); + + /* zero counts */ + memset(si->kmers, 0, indexed_count * sizeof(count_t)); + + minheap_empty(si->m); + + for(unsigned int i=0; ikmersamplecount; i++) + { + unsigned int kmer = si->kmersample[i]; + unsigned char * bitmap = dbindex_getbitmap(kmer); + + if (bitmap) + { + if (ssse3_present) + increment_counters_from_bitmap_ssse3(si->kmers, + bitmap, indexed_count); + else + increment_counters_from_bitmap_sse2(si->kmers, + bitmap, indexed_count); + } + else + { + unsigned int * list = dbindex_getmatchlist(kmer); + unsigned int count = dbindex_getmatchcount(kmer); + for(unsigned int j=0; j < count; j++) + si->kmers[list[j]]++; + } + } + + for(int i=0; i < indexed_count; i++) + topscore_insert(i, si); + + minheap_sort(si->m); +} + +int seqncmp(char * a, char * b, unsigned long n) +{ + for(unsigned int i = 0; i y) + return +1; + } + return 0; +} + + +void align_trim(struct hit * hit) +{ + /* trim alignment and fill in info */ + /* assumes that the hit has been aligned */ + + /* info for semi-global alignment (without gaps at ends) */ + + hit->trim_aln_left = 0; + hit->trim_q_left = 0; + hit->trim_t_left = 0; + hit->trim_aln_right = 0; + hit->trim_q_right = 0; + hit->trim_t_right = 0; + + /* left trim alignment */ + + char * p = hit->nwalignment; + long run = 1; + int scanlength = 0; + sscanf(p, "%ld%n", &run, &scanlength); + char op = *(p+scanlength); + if (op != 'M') + { + hit->trim_aln_left = 1 + scanlength; + if (op == 'D') + hit->trim_q_left = run; + else + hit->trim_t_left = run; + } + + /* right trim alignment */ + + char * e = hit->nwalignment + strlen(hit->nwalignment); + p = e - 1; + op = *p; + if (op != 'M') + { + while (*(p-1) <= '9') + p--; + run = 1; + sscanf(p, "%ld", &run); + hit->trim_aln_right = e - p; + if (op == 'D') + hit->trim_q_right = run; + else + hit->trim_t_right = run; + } + + hit->internal_alignmentlength = hit->nwalignmentlength + - hit->trim_q_left - hit->trim_t_left + - hit->trim_q_right - hit->trim_t_right; + + hit->internal_indels = hit->nwindels + - hit->trim_q_left - hit->trim_t_left + - hit->trim_q_right - hit->trim_t_right; + + hit->internal_gaps = hit->nwgaps + - (hit->trim_q_left + hit->trim_t_left > 0 ? 1 : 0) + - (hit->trim_q_right + hit->trim_t_right > 0 ? 1 : 0); + + /* CD-HIT */ + hit->id0 = hit->shortest > 0 ? 100.0 * hit->matches / hit->shortest : 0.0; + /* all diffs */ + hit->id1 = hit->nwalignmentlength > 0 ? + 100.0 * hit->matches / hit->nwalignmentlength : 0.0; + /* internal diffs */ + hit->id2 = hit->internal_alignmentlength > 0 ? + 100.0 * hit->matches / hit->internal_alignmentlength : 0.0; + /* Marine Biology Lab */ + hit->id3 = MAX(0.0, 100.0 * (1.0 - (1.0 * (hit->mismatches + hit->nwgaps) / + hit->longest))); + /* BLAST */ + hit->id4 = hit->nwalignmentlength > 0 ? + 100.0 * hit->matches / hit->nwalignmentlength : 0.0; + + switch (opt_iddef) + { + case 0: + hit->id = hit->id0; + break; + case 1: + hit->id = hit->id1; + break; + case 2: + hit->id = hit->id2; + break; + case 3: + hit->id = hit->id3; + break; + case 4: + hit->id = hit->id4; + break; + } +} + +int search_acceptable_unaligned(struct searchinfo_s * si, + int target) +{ + /* consider whether a hit satisfy accept criteria before alignment */ + + char * qseq = si->qsequence; + char * dlabel = db_getheader(target); + char * dseq = db_getsequence(target); + long dseqlen = db_getsequencelen(target); + long tsize = db_getabundance(target); + + if ( + /* maxqsize */ + (si->qsize <= opt_maxqsize) + && + /* mintsize */ + (tsize >= opt_mintsize) + && + /* minsizeratio */ + (si->qsize >= opt_minsizeratio * tsize) + && + /* maxsizeratio */ + (si->qsize <= opt_maxsizeratio * tsize) + && + /* minqt */ + (si->qseqlen >= opt_minqt * dseqlen) + && + /* maxqt */ + (si->qseqlen <= opt_maxqt * dseqlen) + && + /* minsl */ + (si->qseqlen < dseqlen ? + si->qseqlen >= opt_minsl * dseqlen : + dseqlen >= opt_minsl * si->qseqlen) + && + /* maxsl */ + (si->qseqlen < dseqlen ? + si->qseqlen <= opt_maxsl * dseqlen : + dseqlen <= opt_maxsl * si->qseqlen) + && + /* idprefix */ + ((si->qseqlen >= opt_idprefix) && + (dseqlen >= opt_idprefix) && + (!seqncmp(qseq, dseq, opt_idprefix))) + && + /* idsuffix */ + ((si->qseqlen >= opt_idsuffix) && + (dseqlen >= opt_idsuffix) && + (!seqncmp(qseq+si->qseqlen-opt_idsuffix, + dseq+dseqlen-opt_idsuffix, + opt_idsuffix))) + && + /* self */ + ((!opt_self) || (strcmp(si->query_head, dlabel))) + && + /* selfid */ + ((!opt_selfid) || + (si->qseqlen != dseqlen) || + (seqncmp(qseq, dseq, si->qseqlen))) + ) + { + /* needs further consideration */ + return 1; + } + else + { + /* reject */ + return 0; + } +} + +int search_acceptable_aligned(struct searchinfo_s * si, + struct hit * hit) +{ + if (/* weak_id */ + (hit->id >= 100.0 * opt_weak_id) && + /* maxsubs */ + (hit->mismatches <= opt_maxsubs) && + /* maxgaps */ + (hit->internal_gaps <= opt_maxgaps) && + /* mincols */ + (hit->internal_alignmentlength >= opt_mincols) && + /* leftjust */ + ((!opt_leftjust) || (hit->trim_q_left + + hit->trim_t_left == 0)) && + /* rightjust */ + ((!opt_rightjust) || (hit->trim_q_right + + hit->trim_t_right == 0)) && + /* query_cov */ + (hit->internal_alignmentlength >= opt_query_cov * si->qseqlen) && + /* target_cov */ + (hit->internal_alignmentlength >= + opt_target_cov * db_getsequencelen(hit->target)) && + /* maxid */ + (hit->id <= 100.0 * opt_maxid) && + /* mid */ + (100.0 * hit->matches / (hit->matches + hit->mismatches) >= opt_mid) && + /* maxdiffs */ + (hit->mismatches + hit->internal_indels <= opt_maxdiffs)) + { + if (hit->id >= 100.0 * opt_id) + { + /* accepted */ + hit->accepted = 1; + hit->weak = 0; + return 1; + } + else + { + /* rejected, but weak hit */ + hit->rejected = 1; + hit->weak = 1; + return 0; + } + } + else + { + /* rejected */ + hit->rejected = 1; + hit->weak = 0; + return 0; + } +} + +void align_delayed(struct searchinfo_s * si) +{ + /* compute global alignment */ + + unsigned int target_list[MAXDELAYED]; + CELL nwscore_list[MAXDELAYED]; + unsigned short nwalignmentlength_list[MAXDELAYED]; + unsigned short nwmatches_list[MAXDELAYED]; + unsigned short nwmismatches_list[MAXDELAYED]; + unsigned short nwgaps_list[MAXDELAYED]; + char * nwcigar_list[MAXDELAYED]; + + int target_count = 0; + + for(int x = si->finalized; x < si->hit_count; x++) + { + struct hit * hit = si->hits + x; + if (! hit->rejected) + target_list[target_count++] = hit->target; + } + + if (target_count) + search16(si->s, + target_count, + target_list, + nwscore_list, + nwalignmentlength_list, + nwmatches_list, + nwmismatches_list, + nwgaps_list, + nwcigar_list); + + int i = 0; + + for(int x = si->finalized; x < si->hit_count; x++) + { + /* maxrejects or maxaccepts reached - ignore remaining hits */ + if ((si->rejects < opt_maxrejects) && (si->accepts < opt_maxaccepts)) + { + struct hit * hit = si->hits + x; + + if (hit->rejected) + { + si->rejects++; + } + else + { + long target = hit->target; + long nwscore = nwscore_list[i]; + + char * nwcigar; + long nwalignmentlength; + long nwmatches; + long nwmismatches; + long nwgaps; + + long dseqlen = db_getsequencelen(target); + + if (nwscore == SHRT_MAX) + { + /* In case the SIMD aligner cannot align, + perform a new alignment with the + linear memory aligner */ + + char * dseq = db_getsequence(target); + + if (nwcigar_list[i]) + free(nwcigar_list[i]); + + nwcigar = xstrdup(si->lma->align(si->qsequence, + dseq, + si->qseqlen, + dseqlen)); + + si->lma->alignstats(nwcigar, + si->qsequence, + dseq, + & nwscore, + & nwalignmentlength, + & nwmatches, + & nwmismatches, + & nwgaps); + } + else + { + nwalignmentlength = nwalignmentlength_list[i]; + nwmatches = nwmatches_list[i]; + nwmismatches = nwmismatches_list[i]; + nwgaps = nwgaps_list[i]; + nwcigar = nwcigar_list[i]; + } + + hit->aligned = 1; + hit->shortest = MIN(si->qseqlen, dseqlen); + hit->longest = MAX(si->qseqlen, dseqlen); + hit->nwalignment = nwcigar; + hit->nwscore = nwscore; + hit->nwdiff = nwalignmentlength - nwmatches; + hit->nwgaps = nwgaps; + hit->nwindels = nwalignmentlength - nwmatches - nwmismatches; + hit->nwalignmentlength = nwalignmentlength; + hit->nwid = 100.0 * (nwalignmentlength - hit->nwdiff) / + nwalignmentlength; + hit->matches = nwalignmentlength - hit->nwdiff; + hit->mismatches = hit->nwdiff - hit->nwindels; + + /* trim alignment and compute numbers excluding terminal gaps */ + align_trim(hit); + + /* test accept/reject criteria after alignment */ + if (search_acceptable_aligned(si, hit)) + si->accepts++; + else + si->rejects++; + + i++; + } + } + } + + /* free ignored alignments */ + while (i < target_count) + free(nwcigar_list[i++]); + + si->finalized = si->hit_count; +} + +void search_onequery(struct searchinfo_s * si) +{ + si->hit_count = 0; + + search16_qprep(si->s, si->qsequence, si->qseqlen); + + si->lma = new LinearMemoryAligner; + + long * scorematrix = si->lma->scorematrix_create(opt_match, opt_mismatch); + + si->lma->set_parameters(scorematrix, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + /* extract unique kmer samples from query*/ + unique_count(si->uh, opt_wordlength, + si->qseqlen, si->qsequence, + & si->kmersamplecount, & si->kmersample); + + /* find database sequences with the most kmer hits */ + search_topscores(si); + + /* analyse targets with the highest number of kmer hits */ + si->accepts = 0; + si->rejects = 0; + si->finalized = 0; + + int delayed = 0; + + int t = 0; + while ((si->finalized + delayed < opt_maxaccepts + opt_maxrejects - 1) && + (si->rejects < opt_maxrejects) && + (si->accepts < opt_maxaccepts) && + (!minheap_isempty(si->m))) + { + elem_t e = minheap_poplast(si->m); + + struct hit * hit = si->hits + si->hit_count; + + hit->target = e.seqno; + hit->count = e.count; + hit->strand = si->strand; + hit->rejected = 0; + hit->accepted = 0; + hit->aligned = 0; + hit->weak = 0; + hit->nwalignment = 0; + + /* Test some accept/reject criteria before alignment */ + if (search_acceptable_unaligned(si, e.seqno)) + { + delayed++; + } + else + { + hit->rejected = 1; + } + + si->hit_count++; + + if (delayed == MAXDELAYED) + { + align_delayed(si); + delayed = 0; + } + t++; + } + if (delayed > 0) + align_delayed(si); + + delete si->lma; + free(scorematrix); +} + +struct hit * search_findbest2_byid(struct searchinfo_s * si_p, + struct searchinfo_s * si_m) +{ + struct hit * best = 0; + + for(int i=0; i < si_p->hit_count; i++) + if ((!best) || (hit_compare_byid_typed(si_p->hits + i, best) < 0)) + best = si_p->hits + i; + + if (opt_strand>1) + for(int i=0; i < si_m->hit_count; i++) + if ((!best) || (hit_compare_byid_typed(si_m->hits + i, best) < 0)) + best = si_m->hits + i; + + if (best && ! best->accepted) + best = 0; + + return best; +} + +struct hit * search_findbest2_bysize(struct searchinfo_s * si_p, + struct searchinfo_s * si_m) +{ + struct hit * best = 0; + + for(int i=0; i < si_p->hit_count; i++) + if ((!best) || (hit_compare_bysize_typed(si_p->hits + i, best) < 0)) + best = si_p->hits + i; + + if (opt_strand>1) + for(int i=0; i < si_m->hit_count; i++) + if ((!best) || (hit_compare_bysize_typed(si_m->hits + i, best) < 0)) + best = si_m->hits + i; + + if (best && ! best->accepted) + best = 0; + + return best; +} + +void search_joinhits(struct searchinfo_s * si_p, + struct searchinfo_s * si_m, + struct hit * * hitsp, + int * hit_count) +{ + /* join and sort accepted hits from both strands */ + /* remove and unallocate unaccepted hits */ + + int a = 0; + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_m : si_p; + for(int i=0; ihit_count; i++) + if (si->hits[i].accepted) + a++; + } + + struct hit * hits = (struct hit *) xmalloc(a * sizeof(struct hit)); + + a = 0; + + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_m : si_p; + for(int i=0; ihit_count; i++) + { + struct hit * h = si->hits + i; + if (h->accepted) + hits[a++] = *h; + else if (h->aligned) + free(h->nwalignment); + } + } + + qsort(hits, a, sizeof(struct hit), hit_compare_byid); + + *hitsp = hits; + *hit_count = a; +} diff --git a/source/vsearch_src/searchcore.h b/source/vsearch_src/searchcore.h new file mode 100644 index 00000000..9bb407f6 --- /dev/null +++ b/source/vsearch_src/searchcore.h @@ -0,0 +1,165 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +//#define COMPARENONVECTORIZED + +/* the number of alignments that can be delayed */ +#define MAXDELAYED 8 + +/* minimum number of kmer matches */ +#define MINMATCHSAMPLECOUNT 6 + +/* minimum kmer match frequency */ +#define MINMATCHSAMPLEFREQ 16 + +struct hit +{ + int target; + int strand; + + /* candidate info */ + unsigned int count; /* number of unique kmers shared with query */ + + bool accepted; /* is it accepted? */ + bool rejected; /* is it rejected? */ + bool aligned; /* has this hit been aligned */ + bool weak; /* weak hits are aligned with id > weak_id */ + + /* info about global alignment, including terminal gaps */ + + int nwscore; /* alignment score */ + int nwdiff; /* indels and mismatches in global alignment */ + int nwgaps; /* gaps in global alignment */ + int nwindels; /* indels in global alignment */ + int nwalignmentlength; /* length of global alignment */ + double nwid; /* percent identity of global alignment */ + char * nwalignment; /* alignment string (cigar) of global alignment */ + int matches; + int mismatches; + + /* info about alignment excluding terminal gaps */ + + int internal_alignmentlength; + int internal_gaps; + int internal_indels; + int trim_q_left; + int trim_q_right; + int trim_t_left; + int trim_t_right; + int trim_aln_left; + int trim_aln_right; + + /* more info */ + + double id; /* identity used for ranking */ + double id0, id1, id2, id3, id4; + + int shortest; /* length of shortest of query and target */ + int longest; /* length of longest of query and target */ +}; + +/* type of kmer hit counter element remember possibility of overflow */ +typedef unsigned short count_t; + +struct searchinfo_s +{ + int query_no; /* query number, zero-based */ + int strand; /* strand of query being analysed */ + int qsize; /* query abundance */ + int query_head_len; /* query header length */ + int query_head_alloc; /* bytes allocated for the header */ + char * query_head; /* query header */ + int qseqlen; /* query length */ + int seq_alloc; /* bytes allocated for the query sequence */ + char * qsequence; /* query sequence */ + unsigned int kmersamplecount; /* number of kmer samples from query */ + unsigned int * kmersample; /* list of kmers sampled from query */ + count_t * kmers; /* list of kmer counts for each db seq */ + struct hit * hits; /* list of hits */ + int hit_count; /* number of hits in the above list */ + struct uhandle_s * uh; /* unique kmer finder instance */ + struct s16info_s * s; /* SIMD aligner instance */ + struct nwinfo_s * nw; /* NW aligner instance */ + LinearMemoryAligner * lma; /* Linear memory aligner instance pointer */ + int accepts; /* number of accepts */ + int rejects; /* number of rejects */ + minheap_t * m; /* min heap with the top kmer db seqs */ + int finalized; +}; + +void search_onequery(struct searchinfo_s * si); + +struct hit * search_findbest2_byid(struct searchinfo_s * si_p, + struct searchinfo_s * si_m); + +struct hit * search_findbest2_bysize(struct searchinfo_s * si_p, + struct searchinfo_s * si_m); + +int search_acceptable_unaligned(struct searchinfo_s * si, int target); + +int search_acceptable_aligned(struct searchinfo_s * si, + struct hit * hit); + +void align_trim(struct hit * hit); + +void search_joinhits(struct searchinfo_s * si_p, + struct searchinfo_s * si_m, + struct hit * * hits, + int * hit_count); diff --git a/source/vsearch_src/sha1.c b/source/vsearch_src/sha1.c new file mode 100644 index 00000000..9ffe49db --- /dev/null +++ b/source/vsearch_src/sha1.c @@ -0,0 +1,377 @@ +/* Slightly modified for vsearch by Torbjorn Rognes */ + +/* +SHA-1 in C +By Steve Reid +100% Public Domain + +----------------- +Modified 7/98 +By James H. Brown +Still 100% Public Domain + +Corrected a problem which generated improper hash values on 16 bit machines +Routine SHA1Update changed from + void SHA1Update(SHA1_CTX* context, unsigned char* data, unsigned int +len) +to + void SHA1Update(SHA1_CTX* context, unsigned char* data, unsigned +long len) + +The 'len' parameter was declared an int which works fine on 32 bit machines. +However, on 16 bit machines an int is too small for the shifts being done +against +it. This caused the hash function to generate incorrect values if len was +greater than 8191 (8K - 1) due to the 'len << 3' on line 3 of SHA1Update(). + +Since the file IO in main() reads 16K at a time, any file 8K or larger would +be guaranteed to generate the wrong hash (e.g. Test Vector #3, a million +"a"s). + +I also changed the declaration of variables i & j in SHA1Update to +unsigned long from unsigned int for the same reason. + +These changes should make no difference to any 32 bit implementations since +an +int and a long are the same size in those environments. + +-- +I also corrected a few compiler warnings generated by Borland C. +1. Added #include for exit() prototype +2. Removed unused variable 'j' in SHA1Final +3. Changed exit(0) to return(0) at end of main. + +ALL changes I made can be located by searching for comments containing 'JHB' +----------------- +Modified 8/98 +By Steve Reid +Still 100% public domain + +1- Removed #include and used return() instead of exit() +2- Fixed overwriting of finalcount in SHA1Final() (discovered by Chris Hall) +3- Changed email address from steve@edmweb.com to sreid@sea-to-sky.net + +----------------- +Modified 4/01 +By Saul Kravitz +Still 100% PD +Modified to run on Compaq Alpha hardware. + +----------------- +Modified 07/2002 +By Ralph Giles +Still 100% public domain +modified for use with stdint types, autoconf +code cleanup, removed attribution comments +switched SHA1Final() argument order for consistency +use SHA1_ prefix for public api +move public api to sha1.h +*/ + +/* +Test Vectors (from FIPS PUB 180-1) +"abc" + A9993E36 4706816A BA3E2571 7850C26C 9CD0D89D +"abcdbcdecdefdefgefghfghighijhijkijkljklmklmnlmnomnopnopq" + 84983E44 1C3BD26E BAAE4AA1 F95129E5 E54670F1 +A million repetitions of "a" + 34AA973C D4C4DAA4 F61EEB2B DBAD2731 6534016F +*/ + +/* #define SHA1HANDSOFF */ + +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#include +#include + +#include +#include "sha1.h" + +void SHA1_Transform(uint32_t state[5], const uint8_t buffer[64]); + +#define rol(value, bits) (((value) << (bits)) | ((value) >> (32 - (bits)))) + +/* blk0() and blk() perform the initial expand. */ +/* I got the idea of expanding during the round function from SSLeay */ +/* FIXME: can we do this in an endian-proof way? */ +#ifdef WORDS_BIGENDIAN +#define blk0(i) block->l[i] +#else +#define blk0(i) (block->l[i] = (rol(block->l[i],24)&0xFF00FF00) \ + |(rol(block->l[i],8)&0x00FF00FF)) +#endif +#define blk(i) (block->l[i&15] = rol(block->l[(i+13)&15]^block->l[(i+8)&15] \ + ^block->l[(i+2)&15]^block->l[i&15],1)) + +/* (R0+R1), R2, R3, R4 are the different operations used in SHA1 */ +#define R0(v,w,x,y,z,i) z+=((w&(x^y))^y)+blk0(i)+0x5A827999+rol(v,5);w=rol(w,30); +#define R1(v,w,x,y,z,i) z+=((w&(x^y))^y)+blk(i)+0x5A827999+rol(v,5);w=rol(w,30); +#define R2(v,w,x,y,z,i) z+=(w^x^y)+blk(i)+0x6ED9EBA1+rol(v,5);w=rol(w,30); +#define R3(v,w,x,y,z,i) z+=(((w|x)&y)|(w&x))+blk(i)+0x8F1BBCDC+rol(v,5);w=rol(w,30); +#define R4(v,w,x,y,z,i) z+=(w^x^y)+blk(i)+0xCA62C1D6+rol(v,5);w=rol(w,30); + + +#ifdef VERBOSE /* SAK */ +void SHAPrintContext(SHA1_CTX *context, char *msg){ + printf("%s (%d,%d) %x %x %x %x %x\n", + msg, + context->count[0], context->count[1], + context->state[0], + context->state[1], + context->state[2], + context->state[3], + context->state[4]); +} +#endif /* VERBOSE */ + +/* Hash a single 512-bit block. This is the core of the algorithm. */ +void SHA1_Transform(uint32_t state[5], const uint8_t buffer[64]) +{ + uint32_t a, b, c, d, e; + typedef union { + uint8_t c[64]; + uint32_t l[16]; + } CHAR64LONG16; + CHAR64LONG16* block; + +#ifdef SHA1HANDSOFF + static uint8_t workspace[64]; + block = (CHAR64LONG16*)workspace; + memcpy(block, buffer, 64); +#else + block = (CHAR64LONG16*)buffer; +#endif + + /* Copy context->state[] to working vars */ + a = state[0]; + b = state[1]; + c = state[2]; + d = state[3]; + e = state[4]; + + /* 4 rounds of 20 operations each. Loop unrolled. */ + R0(a,b,c,d,e, 0); R0(e,a,b,c,d, 1); R0(d,e,a,b,c, 2); R0(c,d,e,a,b, 3); + R0(b,c,d,e,a, 4); R0(a,b,c,d,e, 5); R0(e,a,b,c,d, 6); R0(d,e,a,b,c, 7); + R0(c,d,e,a,b, 8); R0(b,c,d,e,a, 9); R0(a,b,c,d,e,10); R0(e,a,b,c,d,11); + R0(d,e,a,b,c,12); R0(c,d,e,a,b,13); R0(b,c,d,e,a,14); R0(a,b,c,d,e,15); + R1(e,a,b,c,d,16); R1(d,e,a,b,c,17); R1(c,d,e,a,b,18); R1(b,c,d,e,a,19); + R2(a,b,c,d,e,20); R2(e,a,b,c,d,21); R2(d,e,a,b,c,22); R2(c,d,e,a,b,23); + R2(b,c,d,e,a,24); R2(a,b,c,d,e,25); R2(e,a,b,c,d,26); R2(d,e,a,b,c,27); + R2(c,d,e,a,b,28); R2(b,c,d,e,a,29); R2(a,b,c,d,e,30); R2(e,a,b,c,d,31); + R2(d,e,a,b,c,32); R2(c,d,e,a,b,33); R2(b,c,d,e,a,34); R2(a,b,c,d,e,35); + R2(e,a,b,c,d,36); R2(d,e,a,b,c,37); R2(c,d,e,a,b,38); R2(b,c,d,e,a,39); + R3(a,b,c,d,e,40); R3(e,a,b,c,d,41); R3(d,e,a,b,c,42); R3(c,d,e,a,b,43); + R3(b,c,d,e,a,44); R3(a,b,c,d,e,45); R3(e,a,b,c,d,46); R3(d,e,a,b,c,47); + R3(c,d,e,a,b,48); R3(b,c,d,e,a,49); R3(a,b,c,d,e,50); R3(e,a,b,c,d,51); + R3(d,e,a,b,c,52); R3(c,d,e,a,b,53); R3(b,c,d,e,a,54); R3(a,b,c,d,e,55); + R3(e,a,b,c,d,56); R3(d,e,a,b,c,57); R3(c,d,e,a,b,58); R3(b,c,d,e,a,59); + R4(a,b,c,d,e,60); R4(e,a,b,c,d,61); R4(d,e,a,b,c,62); R4(c,d,e,a,b,63); + R4(b,c,d,e,a,64); R4(a,b,c,d,e,65); R4(e,a,b,c,d,66); R4(d,e,a,b,c,67); + R4(c,d,e,a,b,68); R4(b,c,d,e,a,69); R4(a,b,c,d,e,70); R4(e,a,b,c,d,71); + R4(d,e,a,b,c,72); R4(c,d,e,a,b,73); R4(b,c,d,e,a,74); R4(a,b,c,d,e,75); + R4(e,a,b,c,d,76); R4(d,e,a,b,c,77); R4(c,d,e,a,b,78); R4(b,c,d,e,a,79); + + /* Add the working vars back into context.state[] */ + state[0] += a; + state[1] += b; + state[2] += c; + state[3] += d; + state[4] += e; + + /* Wipe variables */ + a = b = c = d = e = 0; +} + + +/* SHA1Init - Initialize new context */ +void SHA1_Init(SHA1_CTX* context) +{ + /* SHA1 initialization constants */ + context->state[0] = 0x67452301; + context->state[1] = 0xEFCDAB89; + context->state[2] = 0x98BADCFE; + context->state[3] = 0x10325476; + context->state[4] = 0xC3D2E1F0; + context->count[0] = context->count[1] = 0; +} + + +/* Run your data through this. */ +void SHA1_Update(SHA1_CTX* context, const uint8_t* data, const size_t len) +{ + size_t i, j; + +#ifdef VERBOSE + SHAPrintContext(context, "before"); +#endif + + j = (context->count[0] >> 3) & 63; + if ((context->count[0] += len << 3) < (len << 3)) context->count[1]++; + context->count[1] += (len >> 29); + if ((j + len) > 63) { + memcpy(&context->buffer[j], data, (i = 64-j)); + SHA1_Transform(context->state, context->buffer); + for ( ; i + 63 < len; i += 64) { + SHA1_Transform(context->state, data + i); + } + j = 0; + } + else i = 0; + memcpy(&context->buffer[j], &data[i], len - i); + +#ifdef VERBOSE + SHAPrintContext(context, "after "); +#endif +} + + +/* Add padding and return the message digest. */ +void SHA1_Final(SHA1_CTX* context, uint8_t digest[SHA1_DIGEST_SIZE]) +{ + uint32_t i; + uint8_t finalcount[8]; + + for (i = 0; i < 8; i++) { + finalcount[i] = (unsigned char)((context->count[(i >= 4 ? 0 : 1)] + >> ((3-(i & 3)) * 8) ) & 255); /* Endian independent */ + } + SHA1_Update(context, (uint8_t *)"\200", 1); + while ((context->count[0] & 504) != 448) { + SHA1_Update(context, (uint8_t *)"\0", 1); + } + SHA1_Update(context, finalcount, 8); /* Should cause a SHA1_Transform() */ + for (i = 0; i < SHA1_DIGEST_SIZE; i++) { + digest[i] = (uint8_t) + ((context->state[i>>2] >> ((3-(i & 3)) * 8) ) & 255); + } + + /* Wipe variables */ + i = 0; + memset(context->buffer, 0, 64); + memset(context->state, 0, 20); + memset(context->count, 0, 8); + memset(finalcount, 0, 8); /* SWR */ + +#ifdef SHA1HANDSOFF /* make SHA1Transform overwrite its own static vars */ + SHA1_Transform(context->state, context->buffer); +#endif +} + +/*************************************************************/ + +#if 0 +int main(int argc, char** argv) +{ +int i, j; +SHA1_CTX context; +unsigned char digest[SHA1_DIGEST_SIZE], buffer[16384]; +FILE* file; + + if (argc > 2) { + puts("Public domain SHA-1 implementation - by Steve Reid "); + puts("Modified for 16 bit environments 7/98 - by James H. Brown "); /* JHB */ + puts("Produces the SHA-1 hash of a file, or stdin if no file is specified."); + return(0); + } + if (argc < 2) { + file = stdin; + } + else { + if (!(file = fopen(argv[1], "rb"))) { + fputs("Unable to open file.", stderr); + return(-1); + } + } + SHA1_Init(&context); + while (!feof(file)) { /* note: what if ferror(file) */ + i = fread(buffer, 1, 16384, file); + SHA1_Update(&context, buffer, i); + } + SHA1_Final(&context, digest); + fclose(file); + for (i = 0; i < SHA1_DIGEST_SIZE/4; i++) { + for (j = 0; j < 4; j++) { + printf("%02X", digest[i*4+j]); + } + putchar(' '); + } + putchar('\n'); + return(0); /* JHB */ +} +#endif + +/* self test */ + +#ifdef TEST + +static char *test_data[] = { + "abc", + "abcdbcdecdefdefgefghfghighijhijkijkljklmklmnlmnomnopnopq", + "A million repetitions of 'a'"}; +static char *test_results[] = { + "A9993E36 4706816A BA3E2571 7850C26C 9CD0D89D", + "84983E44 1C3BD26E BAAE4AA1 F95129E5 E54670F1", + "34AA973C D4C4DAA4 F61EEB2B DBAD2731 6534016F"}; + + +void digest_to_hex(const uint8_t digest[SHA1_DIGEST_SIZE], char *output) +{ + int i,j; + char *c = output; + + for (i = 0; i < SHA1_DIGEST_SIZE/4; i++) { + for (j = 0; j < 4; j++) { + sprintf(c,"%02X", digest[i*4+j]); + c += 2; + } + sprintf(c, " "); + c += 1; + } + *(c - 1) = '\0'; +} + +int main(int argc, char** argv) +{ + int k; + SHA1_CTX context; + uint8_t digest[20]; + char output[80]; + + fprintf(stdout, "verifying SHA-1 implementation... "); + + for (k = 0; k < 2; k++){ + SHA1_Init(&context); + SHA1_Update(&context, (uint8_t*)test_data[k], strlen(test_data[k])); + SHA1_Final(&context, digest); + digest_to_hex(digest, output); + + if (strcmp(output, test_results[k])) { + fprintf(stdout, "FAIL\n"); + fprintf(stderr,"* hash of \"%s\" incorrect:\n", test_data[k]); + fprintf(stderr,"\t%s returned\n", output); + fprintf(stderr,"\t%s is correct\n", test_results[k]); + return (1); + } + } + /* million 'a' vector we feed separately */ + SHA1_Init(&context); + for (k = 0; k < 1000000; k++) + SHA1_Update(&context, (uint8_t*)"a", 1); + SHA1_Final(&context, digest); + digest_to_hex(digest, output); + if (strcmp(output, test_results[2])) { + fprintf(stdout, "FAIL\n"); + fprintf(stderr,"* hash of \"%s\" incorrect:\n", test_data[2]); + fprintf(stderr,"\t%s returned\n", output); + fprintf(stderr,"\t%s is correct\n", test_results[2]); + return (1); + } + + /* success */ + fprintf(stdout, "ok\n"); + return(0); +} +#endif /* TEST */ diff --git a/source/vsearch_src/sha1.h b/source/vsearch_src/sha1.h new file mode 100644 index 00000000..e57a8c3e --- /dev/null +++ b/source/vsearch_src/sha1.h @@ -0,0 +1,27 @@ +/* public api for steve reid's public domain SHA-1 implementation */ +/* this file is in the public domain */ + +#ifndef __SHA1_H +#define __SHA1_H + +#ifdef __cplusplus +extern "C" { +#endif + +typedef struct { + uint32_t state[5]; + uint32_t count[2]; + uint8_t buffer[64]; +} SHA1_CTX; + +#define SHA1_DIGEST_SIZE 20 + +void SHA1_Init(SHA1_CTX* context); +void SHA1_Update(SHA1_CTX* context, const uint8_t* data, const size_t len); +void SHA1_Final(SHA1_CTX* context, uint8_t digest[SHA1_DIGEST_SIZE]); + +#ifdef __cplusplus +} +#endif + +#endif /* __SHA1_H */ diff --git a/source/vsearch_src/showalign.cc b/source/vsearch_src/showalign.cc new file mode 100644 index 00000000..f2b5c231 --- /dev/null +++ b/source/vsearch_src/showalign.cc @@ -0,0 +1,305 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static long line_pos; + +static char * q_seq; +static char * d_seq; + +static long q_start; +static long d_start; + +static long q_pos; +static long d_pos; + +static long q_strand; + +static long alignlen; + +static char * q_line; +static char * a_line; +static char * d_line; + +static FILE * out; + +static int poswidth = 3; +static int headwidth = 5; + +static const char * q_name; +static const char * d_name; + +static long q_len; +static long d_len; + +inline int nt_identical(char a, char b) +{ + if (chrmap_4bit[(int)a] == chrmap_4bit[(int)b]) + return 1; + else + return 0; +} + +inline void putop(char c, long len) +{ + long delta = q_strand ? -1 : +1; + + long count = len; + while(count) + { + if (line_pos == 0) + { + q_start = q_pos; + d_start = d_pos; + } + + char qs; + char ds; + + switch(c) + { + case 'M': + qs = q_strand ? chrmap_complement[(int)(q_seq[q_pos])] : q_seq[q_pos]; + ds = d_seq[d_pos]; + q_pos += delta; + d_pos += 1; + q_line[line_pos] = qs; + a_line[line_pos] = nt_identical(qs, ds) ? '|' : ' '; + d_line[line_pos] = ds; + line_pos++; + break; + + case 'D': + qs = q_strand ? chrmap_complement[(int)(q_seq[q_pos])] : q_seq[q_pos]; + q_pos += delta; + q_line[line_pos] = qs; + a_line[line_pos] = ' '; + d_line[line_pos] = '-'; + line_pos++; + break; + + case 'I': + ds = d_seq[d_pos]; + d_pos += 1; + q_line[line_pos] = '-'; + a_line[line_pos] = ' '; + d_line[line_pos] = ds; + line_pos++; + break; + } + + if ((line_pos == alignlen) || ((c == 0) && (line_pos > 0))) + { + q_line[line_pos] = 0; + a_line[line_pos] = 0; + d_line[line_pos] = 0; + + long q1 = q_start + 1; + if (q1 > q_len) + q1 = q_len; + + long q2 = q_strand ? q_pos +2 : q_pos; + + long d1 = d_start + 1; + if (d1 > d_len) + d1 = d_len; + + long d2 = d_pos; + + fprintf(out, "\n"); + fprintf(out, "%*s %*ld %c %s %ld\n", headwidth, q_name, poswidth, + q1, q_strand ? '-' : '+', q_line, q2); + fprintf(out, "%*s %*s %s\n", headwidth, "", poswidth, + "", a_line); + fprintf(out, "%*s %*ld %c %s %ld\n", headwidth, d_name, poswidth, + d1, '+', d_line, d2); + + line_pos = 0; + } + count--; + } +} + +void align_show(FILE * f, + char * seq1, + long seq1len, + long seq1off, + const char * seq1name, + char * seq2, + long seq2len, + long seq2off, + const char * seq2name, + char * cigar, + long cigarlen, + int numwidth, + int namewidth, + int alignwidth, + int strand) +{ + out = f; + + q_seq = seq1; + q_len = seq1len; + q_name = seq1name; + q_strand = strand; + + d_seq = seq2; + d_len = seq2len; + d_name = seq2name; + + char * p = cigar; + char * e = p + cigarlen; + + poswidth = numwidth; + headwidth = namewidth; + alignlen = alignwidth; + + q_line = (char*) xmalloc(alignwidth+1); + a_line = (char*) xmalloc(alignwidth+1); + d_line = (char*) xmalloc(alignwidth+1); + + q_pos = strand ? seq1len - 1 - seq1off : seq1off; + d_pos = seq2off; + + line_pos = 0; + + while(p < e) + { + long len; + int n; + if (!sscanf(p, "%ld%n", & len, & n)) + { + n = 0; + len = 1; + } + p += n; + char op = *p++; + putop(op, len); + } + + putop(0, 1); + + free(q_line); + free(a_line); + free(d_line); +} + +char * align_getrow(char * seq, char * cigar, int alen, int origin) +{ + char * row = (char*) xmalloc(alen+1); + char * r = row; + char * p = cigar; + char * s = seq; + + while(*p) + { + long len; + int n; + if (!sscanf(p, "%ld%n", & len, & n)) + { + n = 0; + len = 1; + } + p += n; + char op = *p++; + + if ((op == 'M') || + ((op == 'D') && (origin == 0)) || + ((op == 'I') && (origin == 1))) + { + strncpy(r, s, len); + r += len; + } + else + { + /* insert len gap symbols */ + for(long i = 0; i < len; i++) + *r++ = '-'; + } + } + + *r = 0; + return row; +} + +void align_fprint_uncompressed_alignment(FILE * f, char * cigar) +{ + char * p = cigar; + while(*p) + { + if (*p > '9') + fprintf(f, "%c", *p++); + else + { + int n = 0; + char c = 0; + int x = 0; + if (sscanf(p, "%d%c%n", &n, &c, &x) == 2) + { + for(int i = 0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +char * align_getrow(char * seq, char * cigar, int alignlen, int origin); + +void align_fprint_uncompressed_alignment(FILE * f, char * cigar); + +void align_show(FILE * f, + char * seq1, + long seq1len, + long seq1off, + const char * seq1name, + char * seq2, + long seq2len, + long seq2off, + const char * seq2name, + char * cigar, + long cigarlen, + int numwidth, + int namewidth, + int alignwidth, + int strand); diff --git a/source/vsearch_src/shuffle.cc b/source/vsearch_src/shuffle.cc new file mode 100644 index 00000000..505f62d0 --- /dev/null +++ b/source/vsearch_src/shuffle.cc @@ -0,0 +1,113 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +void shuffle() +{ + FILE * fp_output = fopen(opt_output, "w"); + if (!fp_output) + fatal("Unable to open shuffle output file for writing"); + + db_read(opt_shuffle, 0); + show_rusage(); + + int dbsequencecount = db_getsequencecount(); + int * deck = (int*) xmalloc(dbsequencecount * sizeof(int)); + + for(int i=0; i0; i--) + { + /* generate a random number j in the range 0 to i, inclusive */ + int j = random_int(i+1); + + /* exchange elements i and j */ + int t = deck[i]; + deck[i] = deck[j]; + deck[j] = t; + + passed++; + progress_update(i); + } + progress_done(); + show_rusage(); + + passed = MIN(dbsequencecount, opt_topn); + + progress_init("Writing output", passed); + for(int i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void shuffle(); diff --git a/source/vsearch_src/sortbylength.cc b/source/vsearch_src/sortbylength.cc new file mode 100644 index 00000000..07dafb6f --- /dev/null +++ b/source/vsearch_src/sortbylength.cc @@ -0,0 +1,200 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static struct sortinfo_s +{ + unsigned int length; + unsigned int size; + unsigned int seqno; +} * sortinfo; + +int sortbylength_compare(const void * a, const void * b) +{ + struct sortinfo_s * x = (struct sortinfo_s *) a; + struct sortinfo_s * y = (struct sortinfo_s *) b; + + /* longest first, then most abundant, then by label, otherwise keep order */ + + if (x->length < y->length) + return +1; + else if (x->length > y->length) + return -1; + else + if (x->size < y->size) + return +1; + else if (x->size > y->size) + return -1; + else + { + int r = strcmp(db_getheader(x->seqno), db_getheader(y->seqno)); + if (r != 0) + return r; + else + { + if (x->seqno < y->seqno) + return -1; + else if (x->seqno > y->seqno) + return +1; + else + return 0; + } + } +} + +void sortbylength() +{ + FILE * fp_output = fopen(opt_output, "w"); + if (!fp_output) + fatal("Unable to open sortbylength output file for writing"); + + db_read(opt_sortbylength, 0); + show_rusage(); + + int dbsequencecount = db_getsequencecount(); + sortinfo = (struct sortinfo_s *) xmalloc(dbsequencecount * sizeof(sortinfo_s)); + + int passed = 0; + + progress_init("Getting lengths", dbsequencecount); + for(int i=0; i 0) + { + if (passed % 2) + median = sortinfo[(passed-1)/2].length; + else + median = (sortinfo[(passed/2)-1].length + + sortinfo[passed/2].length) / 2.0; + } + + if (!opt_quiet) + fprintf(stderr, "Median length: %.0f\n", median); + + if (opt_log) + fprintf(fp_log, "Median length: %.0f\n", median); + + show_rusage(); + + passed = MIN(passed, opt_topn); + + progress_init("Writing output", passed); + for(int i=0; i"); + + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp_output, seq, len); + else + fprint_seq_digest_md5(fp_output, seq, len); + + if (opt_sizeout) + fprintf(fp_output, ";size=%u;\n", size); + else + fprintf(fp_output, "\n"); + + db_fprint_fasta_seq_only(fp_output, seqno); + } + else if (opt_relabel) + { + if (opt_sizeout) + fprintf(fp_output, ">%s%d;size=%u;\n", opt_relabel, i+1, size); + else + fprintf(fp_output, ">%s%d\n", opt_relabel, i+1); + + db_fprint_fasta_seq_only(fp_output, seqno); + } + else + { + db_fprint_fasta(fp_output, seqno); + } + + progress_update(i); + } + progress_done(); + show_rusage(); + + free(sortinfo); + db_free(); + fclose(fp_output); +} diff --git a/source/vsearch_src/sortbylength.h b/source/vsearch_src/sortbylength.h new file mode 100644 index 00000000..aeb991e2 --- /dev/null +++ b/source/vsearch_src/sortbylength.h @@ -0,0 +1,61 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void sortbylength(); diff --git a/source/vsearch_src/sortbysize.cc b/source/vsearch_src/sortbysize.cc new file mode 100644 index 00000000..35579984 --- /dev/null +++ b/source/vsearch_src/sortbysize.cc @@ -0,0 +1,203 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static struct sortinfo_s +{ + unsigned int size; + unsigned int seqno; +} * sortinfo; + +int sortbysize_compare(const void * a, const void * b) +{ + struct sortinfo_s * x = (struct sortinfo_s *) a; + struct sortinfo_s * y = (struct sortinfo_s *) b; + + /* highest abundance first, then by label, otherwise keep order */ + + if (x->size < y->size) + return +1; + else if (x->size > y->size) + return -1; + else + { + int r = strcmp(db_getheader(x->seqno), db_getheader(y->seqno)); + if (r != 0) + return r; + else + { + if (x->seqno < y->seqno) + return -1; + else if (x->seqno > y->seqno) + return +1; + else + return 0; + } + } +} + +void sortbysize() +{ + FILE * fp_output = fopen(opt_output, "w"); + if (!fp_output) + fatal("Unable to open sortbysize output file for writing"); + + db_read(opt_sortbysize, 0); + + show_rusage(); + + int dbsequencecount = db_getsequencecount(); + + progress_init("Getting sizes", dbsequencecount); + + sortinfo = (struct sortinfo_s*) xmalloc(dbsequencecount * sizeof(sortinfo_s)); + + int passed = 0; + + for(int i=0; i= opt_minsize) && (size <= opt_maxsize)) + { + sortinfo[passed].seqno = i; + sortinfo[passed].size = (unsigned int) size; + passed++; + } + progress_update(i); + } + + progress_done(); + + show_rusage(); + + progress_init("Sorting", 100); + qsort(sortinfo, passed, sizeof(sortinfo_s), sortbysize_compare); + progress_done(); + + double median = 0.0; + if (passed > 0) + { + if (passed % 2) + median = sortinfo[(passed-1)/2].size; + else + median = (sortinfo[(passed/2)-1].size + + sortinfo[passed/2].size) / 2.0; + } + + if (! opt_quiet) + fprintf(stderr, "Median abundance: %.0f\n", median); + + if (opt_log) + fprintf(fp_log, "Median abundance: %.0f\n", median); + + show_rusage(); + + passed = MIN(passed, opt_topn); + + progress_init("Writing output", passed); + for(int i=0; i"); + + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp_output, seq, len); + else + fprint_seq_digest_md5(fp_output, seq, len); + + if (opt_sizeout) + fprintf(fp_output, ";size=%u;\n", size); + else + fprintf(fp_output, "\n"); + + db_fprint_fasta_seq_only(fp_output, seqno); + } + else if (opt_relabel) + { + if (opt_sizeout) + fprintf(fp_output, ">%s%d;size=%u;\n", opt_relabel, i+1, size); + else + fprintf(fp_output, ">%s%d\n", opt_relabel, i+1); + + db_fprint_fasta_seq_only(fp_output, seqno); + } + else + { + db_fprint_fasta(fp_output, seqno); + } + + progress_update(i); + } + progress_done(); + show_rusage(); + + free(sortinfo); + db_free(); + fclose(fp_output); +} diff --git a/source/vsearch_src/sortbysize.h b/source/vsearch_src/sortbysize.h new file mode 100644 index 00000000..3718e088 --- /dev/null +++ b/source/vsearch_src/sortbysize.h @@ -0,0 +1,61 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void sortbysize(); diff --git a/source/vsearch_src/subsample.cc b/source/vsearch_src/subsample.cc new file mode 100644 index 00000000..61423eca --- /dev/null +++ b/source/vsearch_src/subsample.cc @@ -0,0 +1,160 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +void subsample() +{ + FILE * fp_output = fopen(opt_fastaout, "w"); + if (!fp_output) + fatal("Unable to open subsampling output file for writing"); + + db_read(opt_fastx_subsample, 0); + show_rusage(); + + int dbsequencecount = db_getsequencecount(); + + unsigned long mass_total = 0; + + if (!opt_sizein) + mass_total = dbsequencecount; + else + for(int i=0; i mass_total) + fatal("Cannot subsample more reads than in the original sample"); + + unsigned long x = n; /* number of reads left */ + int a = 0; /* amplicon number */ + unsigned long r = 0; /* read being checked */ + unsigned long m = 0; /* accumulated mass */ + + unsigned long mass = /* mass of current amplicon */ + opt_sizein ? db_getabundance(0) : 1; + + progress_init("Subsampling", mass_total); + while (x > 0) + { + unsigned long random = random_ulong(mass_total - r); + + if (random < x) + { + /* selected read r from amplicon a */ + abundance[a]++; + x--; + } + + r++; + m++; + if (m >= mass) + { + /* next amplicon */ + a++; + mass = opt_sizein ? db_getabundance(a) : 1; + m = 0; + } + progress_update(r); + } + progress_done(); + + int sampled = 0; + progress_init("Writing output", dbsequencecount); + for(int i=0; i0) + { + if (opt_sizeout) + db_fprint_fasta_with_size(fp_output, i, abundance[i]); + else if (opt_xsize) + db_fprint_fasta_strip_size(fp_output, i); + else + db_fprint_fasta(fp_output, i); + + sampled++; + } + progress_update(i); + } + progress_done(); + + free(abundance); + + fprintf(stderr, "Subsampled %lu reads from %d amplicons\n", n, sampled); + + db_free(); + fclose(fp_output); +} diff --git a/source/vsearch_src/subsample.h b/source/vsearch_src/subsample.h new file mode 100644 index 00000000..ae5e044c --- /dev/null +++ b/source/vsearch_src/subsample.h @@ -0,0 +1,61 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void subsample(); diff --git a/source/vsearch_src/unique.cc b/source/vsearch_src/unique.cc new file mode 100644 index 00000000..4c1d899a --- /dev/null +++ b/source/vsearch_src/unique.cc @@ -0,0 +1,350 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* Find the unique kmers or words in a given sequence. Currently the + definintion of "unique kmers" are the kmers that appear exactly once; + kmers that appear twice or more often are ignored. + Maybe the definition should be all kmers that appear in the input + sequence, but that each of those kmers shoudl appear only + once in the resulting list. + Experiments indicate that the current (first) definition gives + both the highest sensitivity and precision. */ + +#define HASH CityHash64 + +struct bucket_s +{ + unsigned int kmer; + unsigned int count; +}; + +struct uhandle_s +{ + struct bucket_s * hash; + unsigned int * list; + unsigned int hash_mask; + int size; + int alloc; + + unsigned long bitmap_size; + unsigned long * bitmap; +}; + +struct uhandle_s * unique_init() +{ + uhandle_s * uh = (struct uhandle_s *) xmalloc(sizeof(struct uhandle_s)); + + uh->alloc = 2048; + uh->size = 0; + uh->hash_mask = uh->alloc - 1; + uh->hash = (struct bucket_s *) xmalloc(sizeof(struct bucket_s) * uh->alloc); + uh->list = (unsigned int *) xmalloc(sizeof(unsigned int) * uh->alloc); + + uh->bitmap_size = 0; + uh->bitmap = 0; + + return uh; +} + +void unique_exit(struct uhandle_s * uh) +{ + if (uh->bitmap) + free(uh->bitmap); + if (uh->hash) + free(uh->hash); + if (uh->list) + free(uh->list); + free(uh); +} + +int unique_compare(const void * a, const void * b) +{ + unsigned int * x = (unsigned int*) a; + unsigned int * y = (unsigned int*) b; + + if (xy) + return +1; + else + return 0; +} + + +void unique_count_bitmap(struct uhandle_s * uh, + int k, + int seqlen, + char * seq, + unsigned int * listlen, + unsigned int * * list) +{ + /* if necessary, reallocate list of unique kmers */ + + if (uh->alloc < seqlen) + { + while (uh->alloc < seqlen) + uh->alloc *= 2; + uh->list = (unsigned int *) + xrealloc(uh->list, sizeof(unsigned int) * uh->alloc); + } + + unsigned long size = 1UL << (k << 1UL); + + /* reallocate bitmap arrays if necessary */ + + if (uh->bitmap_size < size) + { + uh->bitmap = (unsigned long *) xrealloc(uh->bitmap, size >> 2UL); + uh->bitmap_size = size; + } + + memset(uh->bitmap, 0, size >> 2UL); + + unsigned long bad = 0; + unsigned long kmer = 0; + unsigned long mask = size - 1UL; + char * s = seq; + char * e1 = s + k-1; + char * e2 = s + seqlen; + if (e2 < e1) + e1 = e2; + + while (s < e1) + { + bad <<= 2UL; + bad |= chrmap_masked[(int)(*s)]; + + kmer <<= 2UL; + kmer |= chrmap_2bit[(int)(*s++)]; + } + + int candidates = 0; + + while (s < e2) + { + bad <<= 2UL; + bad |= chrmap_masked[(int)(*s)]; + bad &= mask; + + kmer <<= 2UL; + kmer |= chrmap_2bit[(int)(*s++)]; + kmer &= mask; + + if (!bad) + { + unsigned long x = kmer >> 6UL; + unsigned long y = 1UL << (kmer & 63UL); + + unsigned long uniq = uh->bitmap[2*x]; + unsigned long seen = uh->bitmap[2*x+1]; + + uh->bitmap[2*x] = (uniq & ~y) | (y & ~seen); + uh->bitmap[2*x+1] = seen | y; + + uh->list[candidates++] = kmer; + } + } + + int unique = 0; + + for (int i = 0; i < candidates; i++) + { + kmer = uh->list[i]; + unsigned long x = kmer >> 6UL; + unsigned long y = 1UL << (kmer & 63UL); + + if (uh->bitmap[2*x] & y) + uh->list[unique++] = uh->list[i]; + } + + *listlen = unique; + *list = uh->list; +} + +void unique_count_hash(struct uhandle_s * uh, + int k, + int seqlen, + char * seq, + unsigned int * listlen, + unsigned int * * list) +{ + unsigned long unique; + + /* if necessary, reallocate hash table and list of unique kmers */ + + if (uh->alloc < 2*seqlen) + { + while (uh->alloc < 2*seqlen) + uh->alloc *= 2; + uh->hash = (struct bucket_s *) + xrealloc(uh->hash, sizeof(struct bucket_s) * uh->alloc); + uh->list = (unsigned int *) + xrealloc(uh->list, sizeof(unsigned int) * uh->alloc); + } + + /* hashtable variant */ + + uh->size = 1; + while (uh->size < 2*seqlen) + uh->size *= 2; + uh->hash_mask = uh->size - 1; + + memset(uh->hash, 0, sizeof(struct bucket_s) * uh->size); + + unsigned long bad = 0; + unsigned long j; + unsigned int kmer = 0; + unsigned int mask = (1<<(2*k)) - 1; + char * s = seq; + char * e1 = s + k-1; + char * e2 = s + seqlen; + if (e2 < e1) + e1 = e2; + + while (s < e1) + { + bad <<= 2UL; + bad |= chrmap_masked[(int)(*s)]; + + kmer <<= 2; + kmer |= chrmap_2bit[(int)(*s++)]; + } + + while (s < e2) + { + bad <<= 2UL; + bad |= chrmap_masked[(int)(*s)]; + bad &= mask; + + kmer <<= 2; + kmer |= chrmap_2bit[(int)(*s++)]; + kmer &= mask; + + if (!bad) + { + /* find free appropriate bucket in hash */ + j = HASH((char*)&kmer, (k+3)/4) & uh->hash_mask; + while((uh->hash[j].count) && (uh->hash[j].kmer != kmer)) + j = (j + 1) & uh->hash_mask; + + uh->hash[j].kmer = kmer; + uh->hash[j].count++; + } + } + + unique = 0; + for(int i=0; isize; i++) + if (uh->hash[i].count == 1) + uh->list[unique++] = uh->hash[i].kmer; + + *listlen = unique; + *list = uh->list; +} + +void unique_count(struct uhandle_s * uh, + int k, + int seqlen, + char * seq, + unsigned int * listlen, + unsigned int * * list) +{ + if (k<10) + unique_count_bitmap(uh, k, seqlen, seq, listlen, list); + else + unique_count_hash(uh, k, seqlen, seq, listlen, list); +} + +int unique_count_shared(struct uhandle_s * uh, + int k, + int listlen, + unsigned int * list) +{ + /* counts how many of the kmers in list are present in the + (already computed) hash or bitmap */ + + int count = 0; + if (k<10) + { + for(int i = 0; i> 6UL; + unsigned long y = 1UL << (kmer & 63UL); + if (uh->bitmap[2*x] & y) + count++; + } + } + else + { + for(int i = 0; ihash_mask; + while((uh->hash[j].count) && (uh->hash[j].kmer != kmer)) + j = (j + 1) & uh->hash_mask; + if (uh->hash[j].count == 1) + count++; + } + } + return count; +} diff --git a/source/vsearch_src/unique.h b/source/vsearch_src/unique.h new file mode 100644 index 00000000..557fc2f6 --- /dev/null +++ b/source/vsearch_src/unique.h @@ -0,0 +1,78 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +struct bucket_s; +struct uhandle_s; + +struct uhandle_s * unique_init(); + +void unique_exit(struct uhandle_s * u); + +void unique_count(struct uhandle_s * uh, + int k, + int seqlen, + char * seq, + unsigned int * listlen, + unsigned int * * list); + +int unique_count_shared(struct uhandle_s * uh, + int k, + int listlen, + unsigned int * list); diff --git a/source/vsearch_src/userfields.cc b/source/vsearch_src/userfields.cc new file mode 100644 index 00000000..6d722ff3 --- /dev/null +++ b/source/vsearch_src/userfields.cc @@ -0,0 +1,165 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static const char * userfields_names[] = + { + "query", // 0 + "target", // 1 + "evalue", // 2 + "id", // 3 + "pctpv", + "pctgaps", + "pairs", + "gaps", + "qlo", + "qhi", + "tlo", + "thi", + "pv", + "ql", + "tl", + "qs", + "ts", + "alnlen", + "opens", + "exts", + "raw", + "bits", + "aln", + "caln", + "qstrand", + "tstrand", + "qrow", + "trow", + "qframe", + "tframe", + "mism", + "ids", + "qcov", + "tcov", // 33 + "id0", + "id1", + "id2", + "id3", + "id4", // 38 + "qilo", // 39 + "qihi", + "tilo", + "tihi", // 42 + 0 + }; + +int * userfields_requested = 0; +int userfields_requested_count = 0; + +int parse_userfields_arg(char * arg) +{ + // Parses the userfields option argument, e.g. query+target+id+alnlen+mism + // and returns 1 if it is ok or 0 if not. + + char * p = arg; + char * e = p + strlen(p); // pointer to end of string + + userfields_requested_count = 1; + while(p unrecognized field + return 0; // bad argument + + int i = (int)(((const char**)u) - userfields_names); + userfields_requested[fields++] = i; + + p = q; + + if (p == e) // reached end of argument + return 1; + + p++; + } +} diff --git a/source/vsearch_src/userfields.h b/source/vsearch_src/userfields.h new file mode 100644 index 00000000..62e876c1 --- /dev/null +++ b/source/vsearch_src/userfields.h @@ -0,0 +1,64 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +extern int * userfields_requested; +extern int userfields_requested_count; + +int parse_userfields_arg(char * arg); diff --git a/source/vsearch_src/util.cc b/source/vsearch_src/util.cc new file mode 100644 index 00000000..f09fc411 --- /dev/null +++ b/source/vsearch_src/util.cc @@ -0,0 +1,412 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static const char * progress_prompt; +static unsigned long progress_next; +static unsigned long progress_size; +static unsigned long progress_chunk; +static const unsigned long progress_granularity = 200; + +void progress_init(const char * prompt, unsigned long size) +{ + if (! opt_quiet) + { + progress_prompt = prompt; + progress_size = size; + progress_chunk = size < progress_granularity ? + 1 : size / progress_granularity; + progress_next = 0; + fprintf(stderr, "%s %.0f%%", prompt, 0.0); + } +} + +void progress_update(unsigned long progress) +{ + if (! opt_quiet) + if (progress >= progress_next) + { + fprintf(stderr, " \r%s %.0f%%", progress_prompt, + 100.0 * progress / progress_size); + progress_next = progress + progress_chunk; + } +} + +void progress_done() +{ + if (! opt_quiet) + fprintf(stderr, " \r%s %.0f%%\n", progress_prompt, 100.0); +} + +long gcd(long a, long b) +{ + if (b == 0) + { + return a; + } + else + { + return gcd(b, a % b); + } +} + +void __attribute__((noreturn)) fatal(const char * msg) +{ + fprintf(stderr, "\n\n"); + fprintf(stderr, "fatal error: %s\n", msg); + + if (opt_log) + { + fprintf(fp_log, "\n\n"); + fprintf(fp_log, "fatal error: %s\n", msg); + } + + exit(EXIT_FAILURE); +} + +void __attribute__((noreturn)) fatal(const char * format, const char * message) +{ + fprintf(stderr, "\n\n"); + fprintf(stderr, format, message); + fprintf(stderr, "\n"); + + if (opt_log) + { + fprintf(fp_log, "\n\n"); + fprintf(fp_log, format, message); + fprintf(fp_log, "\n"); + } + + exit(EXIT_FAILURE); +} + +void * xmalloc(size_t size) +{ + const size_t alignment = 16; + void * t = 0; + if (posix_memalign(& t, alignment, size)) + fatal("Unable to allocate enough memory."); + if (!t) + fatal("Unable to allocate enough memory."); + return t; +} + +void * xrealloc(void *ptr, size_t size) +{ + if (size == 0) + size = 1; + void * t = realloc(ptr, size); + if (!t) + fatal("Unable to allocate enough memory."); + return t; +} + +char * xstrdup(const char *s) +{ + size_t len = strlen(s); + char * p = (char*) xmalloc(len+1); + return strcpy(p, s); +} + + +char * xstrchrnul(char *s, int c) +{ + char * r = strchr(s, c); + + if (r) + return r; + else + return (char *)s + strlen(s); +} + +unsigned long hash_cityhash64(char * s, unsigned long n) +{ + return CityHash64((const char*)s, n); +} + +long getusec(void) +{ + struct timeval tv; + if(gettimeofday(&tv,0) != 0) return 0; + return tv.tv_sec * 1000000 + tv.tv_usec; +} + +void show_rusage() +{ +#if 0 + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + + fprintf(stderr, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); + fprintf(stderr, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); + + fprintf(stderr, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); + + if (opt_log) + { + fprintf(fp_log, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); + fprintf(fp_log, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); + + fprintf(fp_log, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); + } +#endif +} + +void fprint_fasta_hdr_only(FILE * fp, const char * hdr) +{ + fprintf(fp, ">%s\n", hdr); +} + +void fprint_fasta_seq_only(FILE * fp, char * seq, unsigned long len, int width) +{ + /* + The actual length of the sequence may be longer than "len", but only + "len" characters are printed. + + Specify width of lines - zero (or <1) means linearize (all on one line). + */ + + if (width < 1) + fprintf(fp, "%.*s\n", (int)(len), seq); + else + { + long rest = len; + for(unsigned long i=0; i 0 + The random() function returns a random number in the range + 0 to 2147483647 (=2^31-1=RAND_MAX), inclusive. + We should avoid some of the upper generated numbers to + avoid modulo bias. + */ + + long random_max = RAND_MAX; + long limit = random_max - (random_max + 1) % n; + long r = random(); + while (r > limit) + r = random(); + return r % n; +} + +unsigned long random_ulong(unsigned long n) +{ + /* + Generate a random integer in the range 0 to n-1, inclusive, + n must be > 0 + */ + + unsigned long random_max = ULONG_MAX; + unsigned long limit = random_max - (random_max - n + 1) % n; + unsigned long r = ((random() << 48) ^ (random() << 32) ^ + (random() << 16) ^ (random())); + while (r > limit) + r = ((random() << 48) ^ (random() << 32) ^ + (random() << 16) ^ (random())); + return r % n; +} + +void string_normalize(char * normalized, char * s, unsigned int len) +{ + /* convert string to upper case and replace U by T */ + char * p = s; + char * q = normalized; + for(unsigned int i=0; i> 4]; + hex[2*i+1] = hexdigits[digest[i] & 15]; + } + hex[2*LEN_DIG_SHA1] = 0; +} + +void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen) +{ + /* Save hexadecimal representation of the MD5 hash of the sequence. + The string array digest must be large enough (LEN_HEX_DIG_MD5). + First normalize string by uppercasing it and replacing U's with T's. */ + + char * normalized = (char*) xmalloc(seqlen+1); + string_normalize(normalized, seq, seqlen); + + unsigned char digest[LEN_DIG_MD5]; + + MD5(normalized, (size_t) seqlen, digest); + + free(normalized); + + for(int i=0; i> 4]; + hex[2*i+1] = hexdigits[digest[i] & 15]; + } + hex[2*LEN_DIG_MD5] = 0; +} + + +void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen) +{ + char digest[LEN_HEX_DIG_SHA1]; + get_hex_seq_digest_sha1(digest, seq, seqlen); + fprintf(fp, "%s", digest); +} + +void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen) +{ + char digest[LEN_HEX_DIG_MD5]; + get_hex_seq_digest_md5(digest, seq, seqlen); + fprintf(fp, "%s", digest); +} diff --git a/source/vsearch_src/util.h b/source/vsearch_src/util.h new file mode 100644 index 00000000..1dcc1e5d --- /dev/null +++ b/source/vsearch_src/util.h @@ -0,0 +1,116 @@ + + +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#ifndef MIN +#define MIN(a,b) ((a) < (b) ? (a) : (b)) +#endif + +#ifndef MAX +#define MAX(a,b) ((a) > (b) ? (a) : (b)) +#endif + +#define MD5_DIGEST_LENGTH 16 +#define SHA_DIGEST_LENGTH SHA1_DIGEST_SIZE + +#define LEN_DIG_MD5 MD5_DIGEST_LENGTH +#define LEN_DIG_SHA1 SHA_DIGEST_LENGTH + +#define LEN_HEX_DIG_MD5 (2*LEN_DIG_MD5+1) +#define LEN_HEX_DIG_SHA1 (2*LEN_DIG_SHA1+1) + + +long gcd(long a, long b); +void fatal(const char * msg); +void fatal(const char * format, const char * message); +void * xmalloc(size_t size); +void * xrealloc(void * ptr, size_t size); +char * xstrdup(const char *s); +char * xstrchrnul(char *s, int c); +unsigned long hash_cityhash64(char * s, unsigned long n); +long getusec(void); +void show_rusage(); +void fprint_fasta_hdr_only(FILE * fp, const char * hdr); +void fprint_fasta_seq_only(FILE * fp, char * seq, unsigned long len, int width); +void reverse_complement(char * rc, char * seq, long len); + +void fprint_fastq(FILE * fp, char * header, char * sequence, char * quality, + bool add_ee, double ee); + +void progress_init(const char * prompt, unsigned long size); +void progress_update(unsigned long progress); +void progress_done(); + +void random_init(); +long random_int(long n); +unsigned long random_ulong(unsigned long n); + +void string_normalize(char * normalized, char * s, unsigned int len); + +void fprint_hex(FILE * fp, unsigned char * data, int len); + +void get_hex_seq_digest_sha1(char * hex, char * seq, int seqlen); +void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen); + +void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen); +void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen); + + diff --git a/source/vsearch_src/vsearch.cc b/source/vsearch_src/vsearch.cc new file mode 100644 index 00000000..26bd6d74 --- /dev/null +++ b/source/vsearch_src/vsearch.cc @@ -0,0 +1,2092 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + + + +#include "vsearch.h" + +/* options */ + +bool opt_clusterout_id; +bool opt_clusterout_sort; +bool opt_eeout; +bool opt_quiet; +bool opt_relabel_md5; +bool opt_relabel_sha1; +bool opt_samheader; +bool opt_sizeorder; +bool opt_xsize; +char * opt_allpairs_global; +char * opt_alnout; +char * opt_blast6out; +char * opt_borderline; +char * opt_centroids; +char * opt_chimeras; +char * opt_cluster_fast; +char * opt_cluster_size; +char * opt_cluster_smallmem; +char * opt_clusters; +char * opt_consout; +char * opt_db; +char * opt_dbmatched; +char * opt_dbnotmatched; +char * opt_derep_fulllength; +char * opt_derep_prefix; +char * opt_fastaout; +char * opt_fastaout_discarded; +char * opt_fastapairs; +char * opt_fastq_chars; +char * opt_fastq_filter; +char * opt_fastq_stats; +char * opt_fastqout; +char * opt_fastqout_discarded; +char * opt_fastx_revcomp; +char * opt_fastx_subsample; +char * opt_label_suffix; +char * opt_log; +char * opt_maskfasta; +char * opt_matched; +char * opt_msaout; +char * opt_nonchimeras; +char * opt_notmatched; +char * opt_output; +char * opt_pattern; +char * opt_profile; +char * opt_relabel; +char * opt_samout; +char * opt_shuffle; +char * opt_sortbylength; +char * opt_sortbysize; +char * opt_uc; +char * opt_uchime_denovo; +char * opt_uchime_ref; +char * opt_uchimealns; +char * opt_uchimeout; +char * opt_usearch_global; +char * opt_userout; +double opt_abskew; +double opt_dn; +double opt_fastq_maxee; +double opt_fastq_maxee_rate; +double opt_id; +double opt_maxid; +double opt_maxqt; +double opt_maxsizeratio; +double opt_maxsl; +double opt_mid; +double opt_mindiv; +double opt_minh; +double opt_minqt; +double opt_minsizeratio; +double opt_minsl; +double opt_query_cov; +double opt_sample_pct; +double opt_target_cov; +double opt_weak_id; +double opt_xn; +int opt_acceptall; +int opt_alignwidth; +int opt_cons_truncate; +int opt_gap_extension_query_interior; +int opt_gap_extension_query_left; +int opt_gap_extension_query_right; +int opt_gap_extension_target_interior; +int opt_gap_extension_target_left; +int opt_gap_extension_target_right; +int opt_gap_open_query_interior; +int opt_gap_open_query_left; +int opt_gap_open_query_right; +int opt_gap_open_target_interior; +int opt_gap_open_target_left; +int opt_gap_open_target_right; +int opt_help; +int opt_mindiffs; +int opt_slots; +int opt_uchimeout5; +int opt_usersort; +int opt_version; +long opt_dbmask; +long opt_fasta_width; +long opt_fastq_ascii; +long opt_fastq_maxns; +long opt_fastq_minlen; +long opt_fastq_qmax; +long opt_fastq_qmaxout; +long opt_fastq_qmin; +long opt_fastq_stripleft; +long opt_fastq_tail; +long opt_fastq_trunclen; +long opt_fastq_truncqual; +long opt_fulldp; +long opt_hardmask; +long opt_iddef; +long opt_idprefix; +long opt_idsuffix; +long opt_leftjust; +long opt_match; +long opt_maxaccepts; +long opt_maxdiffs; +long opt_maxgaps; +long opt_maxhits; +long opt_maxqsize; +long opt_maxrejects; +long opt_maxseqlength; +long opt_maxsize; +long opt_maxsubs; +long opt_maxuniquesize; +long opt_mincols; +long opt_minseqlength; +long opt_minsize; +long opt_mintsize; +long opt_minuniquesize; +long opt_mismatch; +long opt_notrunclabels; +long opt_output_no_hits; +long opt_qmask; +long opt_randseed; +long opt_rightjust; +long opt_rowlen; +long opt_sample_size; +long opt_self; +long opt_selfid; +long opt_sizein; +long opt_sizeout; +long opt_strand; +long opt_threads; +long opt_top_hits_only; +long opt_topn; +long opt_uc_allhits; +long opt_wordlength; + +/* Other variables */ + +/* cpu features available */ + +long mmx_present = 0; +long sse_present = 0; +long sse2_present = 0; +long sse3_present = 0; +long ssse3_present = 0; +long sse41_present = 0; +long sse42_present = 0; +long popcnt_present = 0; +long avx_present = 0; +long avx2_present = 0; + +static char * progname; +static char progheader[80]; +static char * cmdline; +static time_t time_start; +static time_t time_finish; + +FILE * fp_log = 0; + +#define cpuid(f1, f2, a, b, c, d) \ + __asm__ __volatile__ ("cpuid" \ + : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ + : "a" (f1), "c" (f2)); + +void cpu_features_detect() +{ + unsigned int a, b, c, d; + + cpuid(0, 0, a, b, c, d); + unsigned int maxlevel = a & 0xff; + + if (maxlevel >= 1) + { + cpuid(1, 0, a, b, c, d); + mmx_present = (d >> 23) & 1; + sse_present = (d >> 25) & 1; + sse2_present = (d >> 26) & 1; + sse3_present = (c >> 0) & 1; + ssse3_present = (c >> 9) & 1; + sse41_present = (c >> 19) & 1; + sse42_present = (c >> 20) & 1; + popcnt_present = (c >> 23) & 1; + avx_present = (c >> 28) & 1; + + if (maxlevel >= 7) + { + cpuid(7, 0, a, b, c, d); + avx2_present = (b >> 5) & 1; + } + } +} + +void cpu_features_show() +{ + fprintf(stderr, "CPU features:"); + if (mmx_present) + fprintf(stderr, " mmx"); + if (sse_present) + fprintf(stderr, " sse"); + if (sse2_present) + fprintf(stderr, " sse2"); + if (sse3_present) + fprintf(stderr, " sse3"); + if (ssse3_present) + fprintf(stderr, " ssse3"); + if (sse41_present) + fprintf(stderr, " sse4.1"); + if (sse42_present) + fprintf(stderr, " sse4.2"); + if (popcnt_present) + fprintf(stderr, " popcnt"); + if (avx_present) + fprintf(stderr, " avx"); + if (avx2_present) + fprintf(stderr, " avx2"); + fprintf(stderr, "\n"); +} + + +void args_get_gap_penalty_string(char * arg, int is_open) +{ + /* See http://www.drive5.com/usearch/manual/aln_params.html + + --gapopen *E/10I/1E/2L/3RQ/4RT/1IQ + --gapext *E/10I/1E/2L/3RQ/4RT/1IQ + + integer or * + followed by I, E, L, R, Q or T characters + separated by / + * means infinitely high (disallow) + E=end + I=interior + L=left + R=right + Q=query + T=target + + E cannot be combined with L or R + + We do not support floating point values. Therefore, + all default score and penalties are multiplied by 2. + + */ + + char *p = arg; + + while (*p) + { + int skip = 0; + int pen = 0; + + if (sscanf(p, "%d%n", &pen, &skip) == 1) + { + p += skip; + } + else if (*p == '*') + { + pen = 10000; + p++; + } + else + fatal("Invalid gap penalty argument (%s)", p); + + char * q = p; + + int set_E = 0; + int set_I = 0; + int set_L = 0; + int set_R = 0; + int set_Q = 0; + int set_T = 0; + + while((*p) && (*p != '/')) + { + switch(*p) + { + case 'E': + set_E = 1; + break; + case 'I': + set_I = 1; + break; + case 'L': + set_L = 1; + break; + case 'R': + set_R = 1; + break; + case 'Q': + set_Q = 1; + break; + case 'T': + set_T = 1; + break; + default: + fatal("Invalid char '%.1s' in gap penalty string", p); + break; + } + p++; + } + + if (*p == '/') + p++; + + if (set_E && (set_L || set_R)) + fatal("Invalid gap penalty string (E and L or R) '%s'", q); + + if (set_E) + { + set_L = 1; + set_R = 1; + } + + /* if neither L, I, R nor E is specified, it applies to all */ + + if ((!set_L) && (!set_I) && (!set_R)) + { + set_L = 1; + set_I = 1; + set_R = 1; + } + + /* if neither Q nor T is specified, it applies to both */ + + if ((!set_Q) && (!set_T)) + { + set_Q = 1; + set_T = 1; + } + + if (is_open) + { + if (set_Q) + { + if (set_L) + opt_gap_open_query_left = pen; + if (set_I) + opt_gap_open_query_interior = pen; + if (set_R) + opt_gap_open_query_right = pen; + } + if (set_T) + { + if (set_L) + opt_gap_open_target_left = pen; + if (set_I) + opt_gap_open_target_interior = pen; + if (set_R) + opt_gap_open_target_right = pen; + } + } + else + { + if (set_Q) + { + if (set_L) + opt_gap_extension_query_left = pen; + if (set_I) + opt_gap_extension_query_interior = pen; + if (set_R) + opt_gap_extension_query_right = pen; + } + if (set_T) + { + if (set_L) + opt_gap_extension_target_left = pen; + if (set_I) + opt_gap_extension_target_interior = pen; + if (set_R) + opt_gap_extension_target_right = pen; + } + } + } +} + + +long args_getlong(char * arg) +{ + int len = 0; + long temp = 0; + int ret = sscanf(arg, "%ld%n", &temp, &len); + if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) + fatal("Illegal option argument"); + return temp; +} + +double args_getdouble(char * arg) +{ + int len = 0; + double temp = 0; + int ret = sscanf(arg, "%lf%n", &temp, &len); + if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) + fatal("Illegal option argument"); + return temp; +} + +void args_init(int argc, char **argv) +{ + /* Set defaults */ + + progname = argv[0]; + + opt_abskew = 2.0; + opt_acceptall = 0; + opt_alignwidth = 80; + opt_allpairs_global = 0; + opt_alnout = 0; + opt_borderline = 0; + opt_centroids = 0; + opt_chimeras = 0; + opt_cluster_fast = 0; + opt_cluster_size = 0; + opt_cluster_smallmem = 0; + opt_clusterout_id = 0; + opt_clusterout_sort = 0; + opt_clusters = 0; + opt_cons_truncate = 0; + opt_consout = 0; + opt_db = 0; + opt_dbmask = MASK_DUST; + opt_dbmatched = 0; + opt_dbnotmatched = 0; + opt_derep_fulllength = 0; + opt_derep_prefix = 0; + opt_dn = 1.4; + opt_eeout = 0; + opt_fasta_width = 80; + opt_fastaout = 0; + opt_fastaout_discarded = 0; + opt_fastapairs = 0; + opt_fastq_ascii = 33; + opt_fastq_chars = 0; + opt_fastq_maxee = DBL_MAX; + opt_fastq_maxee_rate = DBL_MAX; + opt_fastq_maxns = LONG_MAX; + opt_fastq_minlen = 1; + opt_fastq_qmax = 41; + opt_fastq_qmaxout = 41; + opt_fastq_qmin = 0; + opt_fastq_stats = 0; + opt_fastq_stripleft = 0; + opt_fastq_tail = 4; + opt_fastq_trunclen = 0; + opt_fastq_truncqual = LONG_MIN; + opt_fastqout = 0; + opt_fastqout_discarded = 0; + opt_fastx_revcomp = 0; + opt_fastx_subsample = 0; + opt_fulldp = 0; + opt_gap_extension_query_interior=2; + opt_gap_extension_query_left=1; + opt_gap_extension_query_right=1; + opt_gap_extension_target_interior=2; + opt_gap_extension_target_left=1; + opt_gap_extension_target_right=1; + opt_gap_open_query_interior=20; + opt_gap_open_query_left=2; + opt_gap_open_query_right=2; + opt_gap_open_target_interior=20; + opt_gap_open_target_left=2; + opt_gap_open_target_right=2; + opt_hardmask = 0; + opt_help = 0; + opt_id = -1.0; + opt_iddef = 2; + opt_idprefix = 0; + opt_idsuffix = 0; + opt_label_suffix = 0; + opt_leftjust = 0; + opt_log = 0; + opt_match = 2; + opt_matched = 0; + opt_maxaccepts = 1; + opt_maxdiffs = INT_MAX; + opt_maxgaps = INT_MAX; + opt_maxhits = LONG_MAX; + opt_maxid = 1.0; + opt_maxqsize = INT_MAX; + opt_maxqt = DBL_MAX; + opt_maxrejects = -1; + opt_maxseqlength = 50000; + opt_maxsize = LONG_MAX; + opt_maxsizeratio = DBL_MAX; + opt_maxsl = DBL_MAX; + opt_maxsubs = INT_MAX; + opt_maxuniquesize = LONG_MAX; + opt_mid = 0.0; + opt_mincols = 0; + opt_mindiffs = 3; + opt_mindiv = 0.8; + opt_minh = 0.28; + opt_minqt = 0.0; + opt_minseqlength = 0; + opt_minsize = 0; + opt_minsizeratio = 0.0; + opt_minsl = 0.0; + opt_mintsize = 0; + opt_minuniquesize = 0; + opt_mismatch = -4; + opt_msaout = 0; + opt_nonchimeras = 0; + opt_notmatched = 0; + opt_notrunclabels = 0; + opt_output = 0; + opt_output_no_hits = 0; + opt_pattern = 0; + opt_profile = 0; + opt_qmask = MASK_DUST; + opt_query_cov = 0.0; + opt_quiet = false; + opt_randseed = 0; + opt_relabel = 0; + opt_relabel_md5 = 0; + opt_relabel_sha1 = 0; + opt_rightjust = 0; + opt_rowlen = 64; + opt_samheader = 0; + opt_samout = 0; + opt_sample_pct = 0; + opt_sample_size = 0; + opt_self = 0; + opt_selfid = 0; + opt_shuffle = 0; + opt_sizein = 0; + opt_sizeorder = 0; + opt_sizeout = 0; + opt_slots = 0; + opt_sortbylength = 0; + opt_sortbysize = 0; + opt_strand = 1; + opt_target_cov = 0.0; + opt_threads = 0; + opt_top_hits_only = 0; + opt_topn = LONG_MAX; + opt_uc_allhits = 0; + opt_uchime_denovo = 0; + opt_uchime_ref = 0; + opt_uchimealns = 0; + opt_uchimeout = 0; + opt_uchimeout5 = 0; + opt_usearch_global = 0; + opt_userout = 0; + opt_usersort = 0; + opt_version = 0; + opt_weak_id = 10.0; + opt_wordlength = 8; + opt_xn = 8.0; + opt_xsize = 0; + + opterr = 1; + + static struct option long_options[] = + + { + {"help", no_argument, 0, 0 }, + {"version", no_argument, 0, 0 }, + {"alnout", required_argument, 0, 0 }, + {"usearch_global", required_argument, 0, 0 }, + {"db", required_argument, 0, 0 }, + {"id", required_argument, 0, 0 }, + {"maxaccepts", required_argument, 0, 0 }, + {"maxrejects", required_argument, 0, 0 }, + {"wordlength", required_argument, 0, 0 }, + {"match", required_argument, 0, 0 }, + {"mismatch", required_argument, 0, 0 }, + {"fulldp", no_argument, 0, 0 }, + {"strand", required_argument, 0, 0 }, + {"threads", required_argument, 0, 0 }, + {"gapopen", required_argument, 0, 0 }, + {"gapext", required_argument, 0, 0 }, + {"rowlen", required_argument, 0, 0 }, + {"userfields", required_argument, 0, 0 }, + {"userout", required_argument, 0, 0 }, + {"self", no_argument, 0, 0 }, + {"blast6out", required_argument, 0, 0 }, + {"uc", required_argument, 0, 0 }, + {"weak_id", required_argument, 0, 0 }, + {"uc_allhits", no_argument, 0, 0 }, + {"notrunclabels", no_argument, 0, 0 }, + {"sortbysize", required_argument, 0, 0 }, + {"output", required_argument, 0, 0 }, + {"minsize", required_argument, 0, 0 }, + {"maxsize", required_argument, 0, 0 }, + {"relabel", required_argument, 0, 0 }, + {"sizeout", no_argument, 0, 0 }, + {"derep_fulllength", required_argument, 0, 0 }, + {"minseqlength", required_argument, 0, 0 }, + {"minuniquesize", required_argument, 0, 0 }, + {"topn", required_argument, 0, 0 }, + {"maxseqlength", required_argument, 0, 0 }, + {"sizein", no_argument, 0, 0 }, + {"sortbylength", required_argument, 0, 0 }, + {"matched", required_argument, 0, 0 }, + {"notmatched", required_argument, 0, 0 }, + {"dbmatched", required_argument, 0, 0 }, + {"dbnotmatched", required_argument, 0, 0 }, + {"fastapairs", required_argument, 0, 0 }, + {"output_no_hits", no_argument, 0, 0 }, + {"maxhits", required_argument, 0, 0 }, + {"top_hits_only", no_argument, 0, 0 }, + {"fasta_width", required_argument, 0, 0 }, + {"query_cov", required_argument, 0, 0 }, + {"target_cov", required_argument, 0, 0 }, + {"idprefix", required_argument, 0, 0 }, + {"idsuffix", required_argument, 0, 0 }, + {"minqt", required_argument, 0, 0 }, + {"maxqt", required_argument, 0, 0 }, + {"minsl", required_argument, 0, 0 }, + {"maxsl", required_argument, 0, 0 }, + {"leftjust", no_argument, 0, 0 }, + {"rightjust", no_argument, 0, 0 }, + {"selfid", no_argument, 0, 0 }, + {"maxid", required_argument, 0, 0 }, + {"minsizeratio", required_argument, 0, 0 }, + {"maxsizeratio", required_argument, 0, 0 }, + {"maxdiffs", required_argument, 0, 0 }, + {"maxsubs", required_argument, 0, 0 }, + {"maxgaps", required_argument, 0, 0 }, + {"mincols", required_argument, 0, 0 }, + {"maxqsize", required_argument, 0, 0 }, + {"mintsize", required_argument, 0, 0 }, + {"mid", required_argument, 0, 0 }, + {"shuffle", required_argument, 0, 0 }, + {"randseed", required_argument, 0, 0 }, + {"maskfasta", required_argument, 0, 0 }, + {"hardmask", no_argument, 0, 0 }, + {"qmask", required_argument, 0, 0 }, + {"dbmask", required_argument, 0, 0 }, + {"cluster_smallmem", required_argument, 0, 0 }, + {"cluster_fast", required_argument, 0, 0 }, + {"centroids", required_argument, 0, 0 }, + {"clusters", required_argument, 0, 0 }, + {"consout", required_argument, 0, 0 }, + {"cons_truncate", no_argument, 0, 0 }, + {"msaout", required_argument, 0, 0 }, + {"usersort", no_argument, 0, 0 }, + {"xn", required_argument, 0, 0 }, + {"iddef", required_argument, 0, 0 }, + {"slots", required_argument, 0, 0 }, + {"pattern", required_argument, 0, 0 }, + {"maxuniquesize", required_argument, 0, 0 }, + {"abskew", required_argument, 0, 0 }, + {"chimeras", required_argument, 0, 0 }, + {"dn", required_argument, 0, 0 }, + {"mindiffs", required_argument, 0, 0 }, + {"mindiv", required_argument, 0, 0 }, + {"minh", required_argument, 0, 0 }, + {"nonchimeras", required_argument, 0, 0 }, + {"uchime_denovo", required_argument, 0, 0 }, + {"uchime_ref", required_argument, 0, 0 }, + {"uchimealns", required_argument, 0, 0 }, + {"uchimeout", required_argument, 0, 0 }, + {"uchimeout5", no_argument, 0, 0 }, + {"alignwidth", required_argument, 0, 0 }, + {"allpairs_global", required_argument, 0, 0 }, + {"acceptall", no_argument, 0, 0 }, + {"cluster_size", required_argument, 0, 0 }, + {"samout", required_argument, 0, 0 }, + {"log", required_argument, 0, 0 }, + {"quiet", no_argument, 0, 0 }, + {"fastx_subsample", required_argument, 0, 0 }, + {"sample_pct", required_argument, 0, 0 }, + {"fastq_chars", required_argument, 0, 0 }, + {"profile", required_argument, 0, 0 }, + {"sample_size", required_argument, 0, 0 }, + {"fastaout", required_argument, 0, 0 }, + {"xsize", no_argument, 0, 0 }, + {"clusterout_id", no_argument, 0, 0 }, + {"clusterout_sort", no_argument, 0, 0 }, + {"borderline", required_argument, 0, 0 }, + {"relabel_sha1", no_argument, 0, 0 }, + {"relabel_md5", no_argument, 0, 0 }, + {"derep_prefix", required_argument, 0, 0 }, + {"fastq_filter", required_argument, 0, 0 }, + {"fastqout", required_argument, 0, 0 }, + {"fastaout_discarded", required_argument, 0, 0 }, + {"fastqout_discarded", required_argument, 0, 0 }, + {"fastq_truncqual", required_argument, 0, 0 }, + {"fastq_maxee", required_argument, 0, 0 }, + {"fastq_trunclen", required_argument, 0, 0 }, + {"fastq_minlen", required_argument, 0, 0 }, + {"fastq_stripleft", required_argument, 0, 0 }, + {"fastq_maxee_rate", required_argument, 0, 0 }, + {"fastq_maxns", required_argument, 0, 0 }, + {"eeout", no_argument, 0, 0 }, + {"fastq_ascii", required_argument, 0, 0 }, + {"fastq_qmin", required_argument, 0, 0 }, + {"fastq_qmax", required_argument, 0, 0 }, + {"fastq_qmaxout", required_argument, 0, 0 }, + {"fastq_stats", required_argument, 0, 0 }, + {"fastq_tail", required_argument, 0, 0 }, + {"fastx_revcomp", required_argument, 0, 0 }, + {"label_suffix", required_argument, 0, 0 }, + {"h", no_argument, 0, 0 }, + {"samheader", no_argument, 0, 0 }, + {"sizeorder", no_argument, 0, 0 }, + { 0, 0, 0, 0 } + }; + + int option_count = sizeof(long_options) / sizeof(struct option); + bool options_selected[option_count]; + + memset(options_selected, 0, sizeof(options_selected)); + + int option_index = 0; + int c; + + while ((c = getopt_long_only(argc, argv, "", long_options, + &option_index)) == 0) + { + if (option_index < option_count) + options_selected[option_index] = 1; + + switch(option_index) + { + case 0: + opt_help = 1; + break; + + case 1: + opt_version = 1; + break; + + case 2: + opt_alnout = optarg; + break; + + case 3: + opt_usearch_global = optarg; + break; + + case 4: + opt_db = optarg; + break; + + case 5: + opt_id = args_getdouble(optarg); + break; + + case 6: + opt_maxaccepts = args_getlong(optarg); + break; + + case 7: + opt_maxrejects = args_getlong(optarg); + break; + + case 8: + opt_wordlength = args_getlong(optarg); + break; + + case 9: + opt_match = args_getlong(optarg); + break; + + case 10: + opt_mismatch = args_getlong(optarg); + break; + + case 11: + opt_fulldp = 1; + break; + + case 12: + if (strcasecmp(optarg, "plus") == 0) + opt_strand = 1; + else if (strcasecmp(optarg, "both") == 0) + opt_strand = 2; + else + opt_strand = 0; + break; + + case 13: + opt_threads = args_getlong(optarg); + break; + + case 14: + args_get_gap_penalty_string(optarg, 1); + break; + + case 15: + args_get_gap_penalty_string(optarg, 0); + break; + + case 16: + opt_rowlen = args_getlong(optarg); + break; + + case 17: + if (!parse_userfields_arg(optarg)) + fatal("Unrecognized userfield argument"); + break; + + case 18: + opt_userout = optarg; + break; + + case 19: + opt_self = 1; + break; + + case 20: + opt_blast6out = optarg; + break; + + case 21: + opt_uc = optarg; + break; + + case 22: + opt_weak_id = args_getdouble(optarg); + break; + + case 23: + opt_uc_allhits = 1; + break; + + case 24: + opt_notrunclabels = 1; + break; + + case 25: + opt_sortbysize = optarg; + break; + + case 26: + opt_output = optarg; + break; + + case 27: + opt_minsize = args_getlong(optarg); + break; + + case 28: + opt_maxsize = args_getlong(optarg); + break; + + case 29: + opt_relabel = optarg; + break; + + case 30: + opt_sizeout = 1; + break; + + case 31: + opt_derep_fulllength = optarg; + break; + + case 32: + opt_minseqlength = args_getlong(optarg); + break; + + case 33: + opt_minuniquesize = args_getlong(optarg); + break; + + case 34: + opt_topn = args_getlong(optarg); + break; + + case 35: + opt_maxseqlength = args_getlong(optarg); + break; + + case 36: + opt_sizein = 1; + break; + + case 37: + opt_sortbylength = optarg; + break; + + case 38: + opt_matched = optarg; + break; + + case 39: + opt_notmatched = optarg; + break; + + case 40: + opt_dbmatched = optarg; + break; + + case 41: + opt_dbnotmatched = optarg; + break; + + case 42: + opt_fastapairs = optarg; + break; + + case 43: + opt_output_no_hits = 1; + break; + + case 44: + opt_maxhits = args_getlong(optarg); + break; + + case 45: + opt_top_hits_only = 1; + break; + + case 46: + opt_fasta_width = args_getlong(optarg); + break; + + case 47: + opt_query_cov = args_getdouble(optarg); + break; + + case 48: + opt_target_cov = args_getdouble(optarg); + break; + + case 49: + opt_idprefix = args_getlong(optarg); + break; + + case 50: + opt_idsuffix = args_getlong(optarg); + break; + + case 51: + opt_minqt = args_getdouble(optarg); + break; + + case 52: + opt_maxqt = args_getdouble(optarg); + break; + + case 53: + opt_minsl = args_getdouble(optarg); + break; + + case 54: + opt_maxsl = args_getdouble(optarg); + break; + + case 55: + opt_leftjust = 1; + break; + + case 56: + opt_rightjust = 1; + break; + + case 57: + opt_selfid = 1; + break; + + case 58: + opt_maxid = args_getdouble(optarg); + break; + + case 59: + opt_minsizeratio = args_getdouble(optarg); + break; + + case 60: + opt_maxsizeratio = args_getdouble(optarg); + break; + + case 61: + opt_maxdiffs = args_getlong(optarg); + break; + + case 62: + opt_maxsubs = args_getlong(optarg); + break; + + case 63: + opt_maxgaps = args_getlong(optarg); + break; + + case 64: + opt_mincols = args_getlong(optarg); + break; + + case 65: + opt_maxqsize = args_getlong(optarg); + break; + + case 66: + opt_mintsize = args_getlong(optarg); + break; + + case 67: + opt_mid = args_getdouble(optarg); + break; + + case 68: + opt_shuffle = optarg; + break; + + case 69: + opt_randseed = args_getlong(optarg); + break; + + case 70: + opt_maskfasta = optarg; + break; + + case 71: + opt_hardmask = 1; + break; + + case 72: + if (strcasecmp(optarg, "none") == 0) + opt_qmask = MASK_NONE; + else if (strcasecmp(optarg, "dust") == 0) + opt_qmask = MASK_DUST; + else if (strcasecmp(optarg, "soft") == 0) + opt_qmask = MASK_SOFT; + else + opt_qmask = MASK_ERROR; + break; + + case 73: + if (strcasecmp(optarg, "none") == 0) + opt_dbmask = MASK_NONE; + else if (strcasecmp(optarg, "dust") == 0) + opt_dbmask = MASK_DUST; + else if (strcasecmp(optarg, "soft") == 0) + opt_dbmask = MASK_SOFT; + else + opt_dbmask = MASK_ERROR; + break; + + case 74: + opt_cluster_smallmem = optarg; + break; + + case 75: + opt_cluster_fast = optarg; + break; + + case 76: + opt_centroids = optarg; + break; + + case 77: + opt_clusters = optarg; + break; + + case 78: + opt_consout = optarg; + break; + + case 79: + fprintf(stderr, "WARNING: Option --cons_truncate is ignored\n"); + opt_cons_truncate = 1; + break; + + case 80: + opt_msaout = optarg; + break; + + case 81: + opt_usersort = 1; + break; + + case 82: + opt_xn = args_getdouble(optarg); + break; + + case 83: + opt_iddef = args_getlong(optarg); + break; + + case 84: + fprintf(stderr, "WARNING: Option --slots is ignored\n"); + opt_slots = args_getlong(optarg); + break; + + case 85: + fprintf(stderr, "WARNING: Option --pattern is ignored\n"); + opt_pattern = optarg; + break; + + case 86: + opt_maxuniquesize = args_getlong(optarg); + break; + + case 87: + opt_abskew = args_getdouble(optarg); + break; + + case 88: + opt_chimeras = optarg; + break; + + case 89: + opt_dn = args_getdouble(optarg); + break; + + case 90: + opt_mindiffs = args_getlong(optarg); + break; + + case 91: + opt_mindiv = args_getdouble(optarg); + break; + + case 92: + opt_minh = args_getdouble(optarg); + break; + + case 93: + opt_nonchimeras = optarg; + break; + + case 94: + opt_uchime_denovo = optarg; + break; + + case 95: + opt_uchime_ref = optarg; + break; + + case 96: + opt_uchimealns = optarg; + break; + + case 97: + opt_uchimeout = optarg; + break; + + case 98: + opt_uchimeout5 = 1; + break; + + case 99: + opt_alignwidth = args_getlong(optarg); + break; + + case 100: + opt_allpairs_global = optarg; + break; + + case 101: + opt_acceptall = 1; + break; + + case 102: + opt_cluster_size = optarg; + break; + + case 103: + opt_samout = optarg; + break; + + case 104: + opt_log = optarg; + break; + + case 105: + opt_quiet = true; + break; + + case 106: + opt_fastx_subsample = optarg; + break; + + case 107: + opt_sample_pct = args_getdouble(optarg); + break; + + case 108: + opt_fastq_chars = optarg; + break; + + case 109: + opt_profile = optarg; + break; + + case 110: + opt_sample_size = args_getlong(optarg); + break; + + case 111: + opt_fastaout = optarg; + break; + + case 112: + opt_xsize = 1; + break; + + case 113: + opt_clusterout_id = 1; + break; + + case 114: + opt_clusterout_sort = 1; + break; + + case 115: + opt_borderline = optarg; + break; + + case 116: + opt_relabel_sha1 = 1; + break; + + case 117: + opt_relabel_md5 = 1; + break; + + case 118: + opt_derep_prefix = optarg; + break; + + case 119: + opt_fastq_filter = optarg; + break; + + case 120: + opt_fastqout = optarg; + break; + + case 121: + opt_fastaout_discarded = optarg; + break; + + case 122: + opt_fastqout_discarded = optarg; + break; + + case 123: + opt_fastq_truncqual = args_getlong(optarg); + break; + + case 124: + opt_fastq_maxee = args_getdouble(optarg); + break; + + case 125: + opt_fastq_trunclen = args_getlong(optarg); + break; + + case 126: + opt_fastq_minlen = args_getlong(optarg); + break; + + case 127: + opt_fastq_stripleft = args_getlong(optarg); + break; + + case 128: + opt_fastq_maxee_rate = args_getdouble(optarg); + break; + + case 129: + opt_fastq_maxns = args_getlong(optarg); + break; + + case 130: + opt_eeout = 1; + break; + + case 131: + opt_fastq_ascii = args_getlong(optarg); + break; + + case 132: + opt_fastq_qmin = args_getlong(optarg); + break; + + case 133: + opt_fastq_qmax = args_getlong(optarg); + break; + + case 134: + opt_fastq_qmaxout = args_getlong(optarg); + break; + + case 135: + opt_fastq_stats = optarg; + break; + + case 136: + opt_fastq_tail = args_getlong(optarg); + break; + + case 137: + opt_fastx_revcomp = optarg; + break; + + case 138: + opt_label_suffix = optarg; + break; + + case 139: + opt_help = 1; + break; + + case 140: + opt_samheader = 1; + break; + + case 141: + opt_sizeorder = 1; + break; + + default: + fatal("Internal error in option parsing"); + } + } + + /* Terminate if ambiguous or illegal options have been detected */ + if (c != -1) + exit(EXIT_FAILURE); + + /* Terminate after reporting any extra non-option arguments */ + if (optind < argc) + fatal("Unrecognized string on command line (%s)", argv[optind]); + + int commands = 0; + + if (opt_fastq_chars) + commands++; + if (opt_fastq_filter) + commands++; + if (opt_fastq_stats) + commands++; + if (opt_usearch_global) + commands++; + if (opt_sortbysize) + commands++; + if (opt_sortbylength) + commands++; + if (opt_derep_fulllength) + commands++; + if (opt_derep_prefix) + commands++; + if (opt_help) + commands++; + if (opt_version) + commands++; + if (opt_shuffle) + commands++; + if (opt_fastx_subsample) + commands++; + if (opt_maskfasta) + commands++; + if (opt_cluster_smallmem) + commands++; + if (opt_cluster_fast) + commands++; + if (opt_cluster_size) + commands++; + if (opt_uchime_denovo) + commands++; + if (opt_uchime_ref) + commands++; + if (opt_allpairs_global) + commands++; + if (opt_fastx_revcomp) + commands++; + + if (commands > 1) + fatal("More than one command specified"); + + if (opt_weak_id > opt_id) + opt_weak_id = opt_id; + + if (opt_maxrejects == -1) + { + if (opt_cluster_fast) + opt_maxrejects = 8; + else + opt_maxrejects = 32; + } + + if (opt_minseqlength < 0) + fatal("The argument to --minseqlength must be positive"); + + if (opt_maxaccepts < 0) + fatal("The argument to --maxaccepts must not be negative"); + + if (opt_maxrejects < 0) + fatal("The argument to --maxrejects must not be negative"); + + if ((opt_threads < 0) || (opt_threads > 1024)) + fatal("The argument to --threads must be in the range 0 (default) to 1024"); + + if ((opt_wordlength < 3) || (opt_wordlength > 15)) + fatal("The argument to --wordlength must be in the range 3 to 15"); + + if ((opt_iddef < 0) || (opt_iddef > 4)) + fatal("The argument to --iddef must in the range 0 to 4"); + + if (opt_match <= 0) + fatal("The argument to --match must be positive"); + + if (opt_mismatch >= 0) + fatal("The argument to --mismatch must be negative"); + + if (opt_alignwidth < 0) + fatal("The argument to --alignwidth must not be negative"); + + if (opt_rowlen < 0) + fatal("The argument to --rowlen must not be negative"); + + if (opt_strand < 1) + fatal("The argument to --strand must be plus or both"); + + if (opt_qmask == MASK_ERROR) + fatal("The argument to --qmask must be none, dust or soft"); + + if (opt_dbmask == MASK_ERROR) + fatal("The argument to --dbmask must be none, dust or soft"); + + if ((opt_sample_pct < 0.0) || (opt_sample_pct > 100.0)) + fatal("The argument to --sample_pct must be in the range 0.0 to 100.0"); + + if (opt_sample_size < 0) + fatal("The argument to --sample_size must not be negative"); + + if (opt_relabel_sha1 && opt_relabel_md5) + fatal("Specify either --relabel_sha1 or --relabel_md5, not both"); + + if (opt_fastq_tail < 1) + fatal("The argument to --fastq_tail must be positive"); + + + /* TODO: check valid range of gap penalties */ + + /* adapt/adjust parameters */ + +#if 1 + + /* + Adjust gap open penalty according to convention. + + The specified gap open penalties include the penalty for + a single nucleotide gap: + + gap penalty = gap open penalty + (gap length - 1) * gap extension penalty + + The rest of the code assumes the first nucleotide gap penalty is not + included in the gap opening penalty. + */ + + opt_gap_open_query_left -= opt_gap_extension_query_left; + opt_gap_open_target_left -= opt_gap_extension_target_left; + opt_gap_open_query_interior -= opt_gap_extension_query_interior; + opt_gap_open_target_interior -= opt_gap_extension_target_interior; + opt_gap_open_query_right -= opt_gap_extension_query_right; + opt_gap_open_target_right -= opt_gap_extension_target_right; + +#endif + + if (opt_threads == 0) + opt_threads = sysconf(_SC_NPROCESSORS_ONLN); + + /* set default opt_minseqlength depending on command */ + + if (opt_minseqlength == 0) + { + if (opt_cluster_smallmem || opt_cluster_fast || opt_cluster_size || + opt_usearch_global || opt_derep_fulllength || opt_derep_prefix ) + opt_minseqlength = 32; + else + opt_minseqlength = 1; + } +} + + +void cmd_help() +{ + /* 0 1 2 3 4 5 6 7 */ + /* 01234567890123456789012345678901234567890123456789012345678901234567890123456789 */ + + if (! opt_quiet) + { + fprintf(stdout, + "Usage: %s [OPTIONS]\n", progname); + + fprintf(stdout, + "\n" + "General options\n" + " --fasta_width INT width of FASTA seq lines, 0 for no wrap (80)\n" + " --help | --h display help information\n" + " --log FILENAME write messages, timing and memory info to file\n" + " --maxseqlength INT maximum sequence length (50000)\n" + " --minseqlength INT min seq length (clust/derep/search: 32, other:1)\n" + " --notrunclabels do not truncate labels at first space\n" + " --quiet output just warnings and fatal errors to stderr\n" + " --threads INT number of threads to use, zero for all cores (0)\n" + " --version display version information\n" + "\n" + "Chimera detection\n" + " --uchime_denovo FILENAME detect chimeras de novo\n" + " --uchime_ref FILENAME detect chimeras using a reference database\n" + "Options\n" + " --abskew REAL min abundance ratio of parent vs chimera (2.0)\n" + " --alignwidth INT width of alignment in uchimealn output (80)\n" + " --borderline FILENAME output borderline chimeric sequences to file\n" + " --chimeras FILENAME output chimeric sequences to file\n" + " --db FILENAME reference database for --uchime_ref\n" + " --dn REAL 'no' vote pseudo-count (1.4)\n" + " --mindiffs INT minimum number of differences in segment (3)\n" + " --mindiv REAL minimum divergence from closest parent (0.8)\n" + " --minh REAL minimum score (0.28)\n" + " --nonchimeras FILENAME output non-chimeric sequences to file\n" + " --relabel STRING relabel nonchimeras with this prefix string\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --self exclude identical labels for --uchime_ref\n" + " --selfid exclude identical sequences for --uchime_ref\n" + " --sizeout include abundance information when relabelling\n" + " --uchimealns FILENAME output chimera alignments to file\n" + " --uchimeout FILENAME output to chimera info to tab-separated file\n" + " --uchimeout5 make output compatible with uchime version 5\n" + " --xn REAL 'no' vote weight (8.0)\n" + "\n" + "Clustering\n" + " --cluster_fast FILENAME cluster sequences after sorting by length\n" + " --cluster_size FILENAME cluster sequences after sorting by abundance\n" + " --cluster_smallmem FILENAME cluster already sorted sequences (see -usersort)\n" + "Options (most searching options also apply)\n" + " --centroids FILENAME output centroid sequences to FASTA file\n" + " --clusterout_id add cluster id info to consout and profile files\n" + " --clusterout_sort order msaout, consout, profile by decr abundance\n" + " --clusters STRING output each cluster to a separate FASTA file\n" + " --consout FILENAME output cluster consensus sequences to FASTA file\n" + " --cons_truncate do not ignore terminal gaps in MSA for consensus\n" + " --id REAL reject if identity lower\n" + " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" + " --msaout FILENAME output multiple seq. alignments to FASTA file\n" + " --profile FILENAME output sequence profile of each cluster to file\n" + " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" + " --relabel STRING relabel centroids with this prefix string\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sizein propagate abundance annotation from input\n" + " --sizeorder Sort accepted centroids by abundance (AGC)\n" + " --sizeout write cluster abundances to centroid file\n" + " --strand plus|both cluster using plus or both strands (plus)\n" + " --uc FILENAME filename for UCLUST-like output\n" + " --usersort indicate sequences not presorted by length\n" + "\n" + "Dereplication\n" + " --derep_fulllength FILENAME dereplicate sequences in the given FASTA file\n" + " --derep_prefix FILENAME dereplicate sequences in file based on prefixes\n" + "Options\n" + " --maxuniquesize INT maximum abundance for output from dereplication\n" + " --minuniquesize INT minimum abundance for output from dereplication\n" + " --output FILENAME output FASTA file\n" + " --relabel STRING relabel with this prefix string after derep.\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sizein propagate abundance annotation from input\n" + " --sizeout write abundance annotation to output\n" + " --strand plus|both dereplicate plus or both strands (plus)\n" + " --topn INT output just the n most abundant sequences\n" + " --uc FILENAME filename for UCLUST-like output\n" + "\n" + "FASTA/FASTQ file processing\n" + " --fastq_chars FILENAME Analyse FASTQ file for version and quality range\n" + " --fastq_filter FILENAME Filter FASTQ file, output to FASTQ or FASTA file\n" + " --fastq_stats FILENAME Report FASTQ file statistics\n" + " --fastx_revcomp FILENAME Reverse-complement seqs in FASTA or FASTQ file\n" + "Options\n" + " --eeout Include expected errors in FASTQ filter output\n" + " --fastaout FILENAME FASTA filename for passed seqs from FASTQ filter\n" + " --fastaout_discarded FNAME FASTA filename for discarded by FASTQ filter\n" + " --fastq_ascii INT ASCII char no for FASTQ quality base value (33)\n" + " --fastq_maxee REAL Maximum expected error value for FASTQ filter\n" + " --fastq_maxee_rate REAL Maximum expected error rate for FASTQ filter\n" + " --fastq_maxns INT Maximum number of N's for FASTQ filter\n" + " --fastq_minlen INT Minimum length for FASTQ filter\n" + " --fastq_qmax INT Maximum base quality value for FASTQ input (41)\n" + " --fastq_qmaxout INT Maximum base quality value for FASTQ output\n" + " --fastq_qmin INT Minimum base quality value for FASTQ input (0)\n" + " --fastq_stripleft INT Bases on the left to delete for FASTQ filter\n" + " --fastq_tail INT Length of tails of same quality score to count\n" + " --fastq_trunclen INT Read length for FASTQ filter truncation\n" + " --fastq_truncqual INT Base quality value for FASTQ filter truncation\n" + " --fastqout FILENAME FASTQ filename for passed seqs from FASTQ filter\n" + " --fastqout_discarded FNAME FASTQ filename for discarded by FASTQ filter\n" + " --label_suffix STRING Label to add to output for --fastx_revcomp\n" + "\n" + "Masking\n" + " --maskfasta FILENAME mask sequences in the given FASTA file\n" + "Options\n" + " --hardmask mask by replacing with N instead of lower case\n" + " --output FILENAME output to specified FASTA file\n" + " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" + "\n" + "Pairwise alignment\n" + " --allpairs_global FILENAME perform global alignment of all sequence pairs\n" + "Options (most searching options also apply)\n" + " --alnout FILENAME filename for human-readable alignment output\n" + " --acceptall output all pairwise alignments\n" + "\n" + "Searching\n" + " --usearch_global FILENAME filename of queries for global alignment search\n" + "Options\n" + " --alnout FILENAME filename for human-readable alignment output\n" + " --blast6out FILENAME filename for blast-like tab-separated output\n" + " --db FILENAME filename for FASTA formatted database for search\n" + " --dbmask none|dust|soft mask db with dust, soft or no method (dust)\n" + " --dbmatched FILENAME FASTA file for matching database sequences\n" + " --dbnotmatched FILENAME FASTA file for non-matching database sequences\n" + " --fastapairs FILENAME FASTA file with pairs of query and target\n" + " --fulldp full dynamic programming alignment (always on)\n" + " --gapext STRING penalties for gap extension (2I/1E)\n" + " --gapopen STRING penalties for gap opening (20I/2E)\n" + " --hardmask mask by replacing with N instead of lower case\n" + " --id REAL reject if identity lower\n" + " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" + " --idprefix INT reject if first n nucleotides do not match\n" + " --idsuffix INT reject if last n nucleotides do not match\n" + " --leftjust reject if terminal gaps at alignment left end\n" + " --match INT score for match (2)\n" + " --matched FILENAME FASTA file for matching query sequences\n" + " --maxaccepts INT number of hits to accept and show per strand (1)\n" + " --maxdiffs INT reject if more substitutions or indels\n" + " --maxgaps INT reject if more indels\n" + " --maxhits INT maximum number of hits to show (unlimited)\n" + " --maxid REAL reject if identity higher\n" + " --maxqsize INT reject if query abundance larger\n" + " --maxqt REAL reject if query/target length ratio higher\n" + " --maxrejects INT number of non-matching hits to consider (32)\n" + " --maxsizeratio REAL reject if query/target abundance ratio higher\n" + " --maxsl REAL reject if shorter/longer length ratio higher\n" + " --maxsubs INT reject if more substitutions\n" + " --mid REAL reject if percent identity lower, ignoring gaps\n" + " --mincols INT reject if alignment length shorter\n" + " --minqt REAL reject if query/target length ratio lower\n" + " --minsizeratio REAL reject if query/target abundance ratio lower\n" + " --minsl REAL reject if shorter/longer length ratio lower\n" + " --mintsize INT reject if target abundance lower\n" + " --mismatch INT score for mismatch (-4)\n" + " --notmatched FILENAME FASTA file for non-matching query sequences\n" + " --output_no_hits output non-matching queries to output files\n" + " --pattern STRING option is ignored\n" + " --qmask none|dust|soft mask query with dust, soft or no method (dust)\n" + " --query_cov REAL reject if fraction of query seq. aligned lower\n" + " --rightjust reject if terminal gaps at alignment right end\n" + " --rowlen INT width of alignment lines in alnout output (64)\n" + " --samheader include a header in the SAM output file\n" + " --samout FILENAME filename for SAM format output\n" + " --self reject if labels identical\n" + " --selfid reject if sequences identical\n" + " --sizeout write abundance annotation to dbmatched file\n" + " --slots INT option is ignored\n" + " --strand plus|both search plus or both strands (plus)\n" + " --target_cov REAL reject if fraction of target seq. aligned lower\n" + " --top_hits_only output only hits with identity equal to the best\n" + " --uc FILENAME filename for UCLUST-like output\n" + " --uc_allhits show all, not just top hit with uc output\n" + " --userfields STRING fields to output in userout file\n" + " --userout FILENAME filename for user-defined tab-separated output\n" + " --weak_id REAL include aligned hits with >= id; continue search\n" + " --wordlength INT length of words for database index 3-15 (8)\n" + "\n" + "Shuffling\n" + " --shuffle FILENAME shuffle order of sequences in FASTA file randomly\n" + "Options\n" + " --output FILENAME output to specified FASTA file\n" + " --randseed INT seed for PRNG, zero to use random data source (0)\n" + " --topn INT output just first n sequences\n" + "\n" + "Sorting\n" + " --sortbylength FILENAME sort sequences by length in given FASTA file\n" + " --sortbysize FILENAME abundance sort sequences in given FASTA file\n" + "Options\n" + " --maxsize INT maximum abundance for sortbysize\n" + " --minsize INT minimum abundance for sortbysize\n" + " --output FILENAME output FASTA file\n" + " --relabel STRING relabel with this prefix string after sorting\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sizeout include abundance information when relabelling\n" + " --topn INT output just top n seqs after sorting\n" + "\n" + "Subsampling\n" + " --fastx_subsample FILENAME subsample sequences from given FASTA file\n" + "Options\n" + " --fastaout FILENAME output FASTA file for subsamples\n" + " --randseed INT seed for PRNG, zero to use random data source (0)\n" + " --sample_pct REAL sampling percentage between 0.0 and 100.0\n" + " --sample_size INT sampling size\n" + " --sizein consider abundance info from input, do not ignore\n" + " --sizeout update abundance information in output\n" + " --xsize strip abundance information in output\n" + ); + } +} + +void cmd_allpairs_global() +{ + /* check options */ + + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_samout)) + fatal("No output files specified"); + + if (! (opt_acceptall || ((opt_id >= 0.0) && (opt_id <= 1.0)))) + fatal("Specify either --acceptall or --id with an identity from 0.0 to 1.0"); + + allpairs_global(cmdline, progheader); +} + +void cmd_usearch_global() +{ + /* check options */ + + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_dbmatched) && (!opt_dbnotmatched) && + (!opt_samout)) + fatal("No output files specified"); + + if (!opt_db) + fatal("Database filename not specified with --db"); + + if ((opt_id < 0.0) || (opt_id > 1.0)) + fatal("Identity between 0.0 and 1.0 must be specified with --id"); + + usearch_global(cmdline, progheader); +} + +void cmd_sortbysize() +{ + if (!opt_output) + fatal("FASTA output file for sortbysize must be specified with --output"); + + sortbysize(); +} + +void cmd_sortbylength() +{ + if (!opt_output) + fatal("FASTA output file for sortbylength must be specified with --output"); + + sortbylength(); +} + +void cmd_derep() +{ + if ((!opt_output) && (!opt_uc)) + fatal("Output file for derepl_fulllength must be specified with --output or --uc"); + + if (opt_derep_fulllength) + derep_fulllength(); + else + { + if (opt_strand > 1) + fatal("Option '--strand both' not supported with --derep_prefix"); + else + derep_prefix(); + } +} + +void cmd_shuffle() +{ + if (!opt_output) + fatal("Output file for shuffling must be specified with --output"); + + shuffle(); +} + +void cmd_subsample() +{ + if (!opt_fastaout) + fatal("Output file for subsampling must be specified with --fastaout"); + + if ((opt_sample_pct > 0) && (opt_sample_size > 0)) + fatal("Specify either --sample_pct or --sample_size, not both"); + + subsample(); +} + +void cmd_maskfasta() +{ + if (!opt_output) + fatal("Output file for masking must be specified with --output"); + + maskfasta(); +} + +void cmd_none() +{ + if (! opt_quiet) + fprintf(stderr, + "For help, please enter: %s --help\n" + "\n" + "For further details, please see the manual by entering: man vsearch\n" + "\n" + "Some basic command examples:\n" + "\n" + "vsearch --allpairs_global FILENAME --id 0.5 --alnout FILENAME\n" + "vsearch --cluster_fast FILENAME --id 0.97 --centroids FILENAME\n" + "vsearch --cluster_size FILENAME --id 0.97 --centroids FILENAME\n" + "vsearch --cluster_smallmem FILENAME --usersort --id 0.97 --centroids FILENAME\n" + "vsearch --derep_fulllength FILENAME --output FILENAME\n" + "vsearch --maskfasta FILENAME --output FILENAME\n" + "vsearch --shuffle FILENAME --output FILENAME\n" + "vsearch --sortbylength FILENAME --output FILENAME\n" + "vsearch --sortbysize FILENAME --output FILENAME\n" + "vsearch --uchime_denovo FILENAME --nonchimeras FILENAME\n" + "vsearch --uchime_ref FILENAME --db FILENAME --nonchimeras FILENAME\n" + "vsearch --usearch_global FILENAME --db FILENAME --id 0.97 --alnout FILENAME\n" + "\n", + progname); +} + +void cmd_fastx_revcomp() +{ + if ((!opt_fastaout) && (!opt_fastqout)) + fatal("No output files specified"); + + fastx_revcomp(); +} + +void cmd_cluster() +{ + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_centroids) && (!opt_clusters) && + (!opt_consout) && (!opt_msaout) && + (!opt_samout) && (!opt_profile)) + fatal("No output files specified"); + + if ((opt_id < 0.0) || (opt_id > 1.0)) + fatal("Identity between 0.0 and 1.0 must be specified with --id"); + + if (opt_cluster_fast) + cluster_fast(cmdline, progheader); + else if (opt_cluster_smallmem) + cluster_smallmem(cmdline, progheader); + else if (opt_cluster_size) + cluster_size(cmdline, progheader); +} + +void cmd_uchime() +{ + if ((!opt_chimeras) && (!opt_nonchimeras) && + (!opt_uchimeout) && (!opt_uchimealns)) + fatal("No output files specified"); + + if (opt_uchime_ref && ! opt_db) + fatal("Database filename not specified with --db"); + + if (opt_xn <= 1.0) + fatal("Argument to --xn must be > 1"); + + if (opt_dn <= 0.0) + fatal("Argument to --dn must be > 0"); + + if (opt_mindiffs <= 0) + fatal("Argument to --mindiffs must be > 0"); + + if (opt_mindiv <= 0.0) + fatal("Argument to --mindiv must be > 0"); + + if (opt_minh <= 0.0) + fatal("Argument to --minh must be > 0"); + + if (opt_abskew <= 1.0) + fatal("Argument to --abskew must be > 1"); + + chimera(); +} + +void cmd_fastq_filter() +{ + if ((!opt_fastqout) && (!opt_fastaout) && + (!opt_fastqout_discarded) && (!opt_fastaout_discarded)) + fatal("No output files specified"); + fastq_filter(); +} + +void fillheader() +{ + snprintf(progheader, 80, + "%s v%s_%s, %.1fGB RAM, %ld cores", + PROG_NAME, PROG_VERSION, PROG_ARCH, + arch_get_memtotal() / 1024.0 / 1024.0 / 1024.0, + sysconf(_SC_NPROCESSORS_ONLN)); +} + +void getentirecommandline(int argc, char** argv) +{ + int len = 0; + for (int i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + + +#include "cityhash/city.h" +#include "md5.h" +#include "sha1.h" +#include "util.h" +#include "xstring.h" +#include "align_simd.h" +#include "maps.h" +#include "arch.h" +#include "abundance.h" +#include "db.h" +#include "align.h" +#include "unique.h" +#include "bitmap.h" +#include "dbindex.h" +#include "minheap.h" +#include "search.h" +#include "linmemalign.h" +#include "searchcore.h" +#include "showalign.h" +#include "userfields.h" +#include "results.h" +#include "sortbysize.h" +#include "sortbylength.h" +#include "derep.h" +#include "shuffle.h" +#include "mask.h" +#include "cluster.h" +#include "msa.h" +#include "chimera.h" +#include "cpu.h" +#include "allpairs.h" +#include "subsample.h" +#include "fasta.h" +#include "fastq.h" +#include "fastqops.h" +#include "fastxdetect.h" + + +//vsearch definitions + +#define PROG_NAME "vsearch" //PACKAGE +#define PROG_VERSION "1.4.1" //PACKAGE_VERSION +/* Define to the address where bug reports for this package should be sent. */ +#define PACKAGE_BUGREPORT "torognes@ifi.uio.no" + + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + #include + #include + #include + #include + #include + + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_STAT_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_TIME_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_TYPES_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_UNISTD_H 1 + + + #if defined (__APPLE__) || (__MACH__) + #define PROG_ARCH "osx_x86_64" + #include + #else + #define PROG_ARCH "linux_x86_64" + #include + #endif +#else + #define PROG_ARCH "Windows_x86_64" +#endif + + +/* options */ + +extern bool opt_clusterout_id; +extern bool opt_clusterout_sort; +extern bool opt_eeout; +extern bool opt_quiet; +extern bool opt_relabel_md5; +extern bool opt_relabel_sha1; +extern bool opt_samheader; +extern bool opt_sizeorder; +extern bool opt_xsize; +extern char * opt_allpairs_global; +extern char * opt_alnout; +extern char * opt_blast6out; +extern char * opt_borderline; +extern char * opt_centroids; +extern char * opt_chimeras; +extern char * opt_cluster_fast; +extern char * opt_cluster_size; +extern char * opt_cluster_smallmem; +extern char * opt_clusters; +extern char * opt_consout; +extern char * opt_db; +extern char * opt_dbmatched; +extern char * opt_dbnotmatched; +extern char * opt_derep_fulllength; +extern char * opt_derep_prefix; +extern char * opt_fastaout; +extern char * opt_fastaout_discarded; +extern char * opt_fastapairs; +extern char * opt_fastq_chars; +extern char * opt_fastq_filter; +extern char * opt_fastq_stats; +extern char * opt_fastqout; +extern char * opt_fastqout_discarded; +extern char * opt_fastx_revcomp; +extern char * opt_fastx_subsample; +extern char * opt_label_suffix; +extern char * opt_log; +extern char * opt_maskfasta; +extern char * opt_matched; +extern char * opt_msaout; +extern char * opt_nonchimeras; +extern char * opt_notmatched; +extern char * opt_output; +extern char * opt_pattern; +extern char * opt_profile; +extern char * opt_relabel; +extern char * opt_samout; +extern char * opt_shuffle; +extern char * opt_sortbylength; +extern char * opt_sortbysize; +extern char * opt_uc; +extern char * opt_uchime_denovo; +extern char * opt_uchime_ref; +extern char * opt_uchimealns; +extern char * opt_uchimeout; +extern char * opt_usearch_global; +extern char * opt_userout; +extern double opt_abskew; +extern double opt_dn; +extern double opt_fastq_maxee; +extern double opt_fastq_maxee_rate; +extern double opt_id; +extern double opt_maxid; +extern double opt_maxqt; +extern double opt_maxsizeratio; +extern double opt_maxsl; +extern double opt_mid; +extern double opt_mindiv; +extern double opt_minh; +extern double opt_minqt; +extern double opt_minsizeratio; +extern double opt_minsl; +extern double opt_query_cov; +extern double opt_sample_pct; +extern double opt_target_cov; +extern double opt_weak_id; +extern double opt_xn; +extern int opt_acceptall; +extern int opt_alignwidth; +extern int opt_cons_truncate; +extern int opt_gap_extension_query_interior; +extern int opt_gap_extension_query_left; +extern int opt_gap_extension_query_right; +extern int opt_gap_extension_target_interior; +extern int opt_gap_extension_target_left; +extern int opt_gap_extension_target_right; +extern int opt_gap_open_query_interior; +extern int opt_gap_open_query_left; +extern int opt_gap_open_query_right; +extern int opt_gap_open_target_interior; +extern int opt_gap_open_target_left; +extern int opt_gap_open_target_right; +extern int opt_help; +extern int opt_mindiffs; +extern int opt_slots; +extern int opt_uchimeout5; +extern int opt_usersort; +extern int opt_version; +extern long opt_dbmask; +extern long opt_fasta_width; +extern long opt_fastq_ascii; +extern long opt_fastq_maxns; +extern long opt_fastq_minlen; +extern long opt_fastq_qmax; +extern long opt_fastq_qmaxout; +extern long opt_fastq_qmin; +extern long opt_fastq_stripleft; +extern long opt_fastq_tail; +extern long opt_fastq_trunclen; +extern long opt_fastq_truncqual; +extern long opt_fulldp; +extern long opt_hardmask; +extern long opt_iddef; +extern long opt_idprefix; +extern long opt_idsuffix; +extern long opt_leftjust; +extern long opt_match; +extern long opt_maxaccepts; +extern long opt_maxdiffs; +extern long opt_maxgaps; +extern long opt_maxhits; +extern long opt_maxqsize; +extern long opt_maxrejects; +extern long opt_maxseqlength; +extern long opt_maxsize; +extern long opt_maxsubs; +extern long opt_maxuniquesize; +extern long opt_mincols; +extern long opt_minseqlength; +extern long opt_minsize; +extern long opt_mintsize; +extern long opt_minuniquesize; +extern long opt_mismatch; +extern long opt_notrunclabels; +extern long opt_output_no_hits; +extern long opt_qmask; +extern long opt_randseed; +extern long opt_rightjust; +extern long opt_rowlen; +extern long opt_sample_size; +extern long opt_self; +extern long opt_selfid; +extern long opt_sizein; +extern long opt_sizeout; +extern long opt_strand; +extern long opt_threads; +extern long opt_top_hits_only; +extern long opt_topn; +extern long opt_uc_allhits; +extern long opt_wordlength; + +extern long mmx_present; +extern long sse_present; +extern long sse2_present; +extern long sse3_present; +extern long ssse3_present; +extern long sse41_present; +extern long sse42_present; +extern long popcnt_present; +extern long avx_present; +extern long avx2_present; + +extern FILE * fp_log; + +/* main function prototype */ +int vsearch_main(int, char**); + diff --git a/source/vsearch_src/xstring.h b/source/vsearch_src/xstring.h new file mode 100644 index 00000000..5b1d310e --- /dev/null +++ b/source/vsearch_src/xstring.h @@ -0,0 +1,143 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +static char empty_string[1] = ""; + +class xstring +{ + char * string; + size_t length; + size_t alloc; + + public: + + xstring() + { + length = 0; + alloc = 0; + string = 0; + } + + ~xstring() + { + if (alloc > 0) + free(string); + alloc = 0; + string = 0; + length = 0; + } + + void empty() + { + length = 0; + } + + char * get_string() + { + if (length > 0) + return string; + else + return empty_string; + } + + size_t get_length() + { + return length; + } + + void add_c(char c) + { + size_t needed = 1; + if (length + needed + 1 > alloc) + { + alloc = length + needed + 1; + string = (char*) xrealloc(string, alloc); + } + string[length] = c; + length += 1; + string[length] = 0; + } + + void add_d(int d) + { + int needed = snprintf(0, 0, "%d", d); + if (needed < 0) + fatal("snprintf failed"); + if (length + needed + 1 > alloc) + { + alloc = length + needed + 1; + string = (char*) xrealloc(string, alloc); + } + sprintf(string + length, "%d", d); + length += needed; + } + + void add_s(char * s) + { + size_t needed = strlen(s); + if (length + needed + 1 > alloc) + { + alloc = length + needed + 1; + string = (char*) xrealloc(string, alloc); + } + strcpy(string + length, s); + length += needed; + } +}; From b80307d5e5c8c0bf4550c35aeec2dae923ade190 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 9 Oct 2015 13:39:37 -0400 Subject: [PATCH 057/135] Removes unnecessary linking flags --- Mothur.xcodeproj/project.pbxproj | 4 ---- 1 file changed, 4 deletions(-) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 75a06323..e153eb04 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -968,7 +968,6 @@ 48A52F991BC428DF00548F6C /* xstring.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = xstring.h; path = source/vsearch_src/xstring.h; sourceTree = ""; }; 48A52FE31BC44D2900548F6C /* libcpu_sse2.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libcpu_sse2.a; path = ../vsearch/src/libcpu_sse2.a; sourceTree = ""; }; 48A52FE41BC44D2900548F6C /* libcpu_ssse3.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libcpu_ssse3.a; path = ../vsearch/src/libcpu_ssse3.a; sourceTree = ""; }; - 48A52FE71BC5899A00548F6C /* libboost_iostreams.a */ = {isa = PBXFileReference; lastKnownFileType = archive.ar; name = libboost_iostreams.a; path = "../boost_1_58_0/bin.v2/libs/iostreams/build/darwin-4.2.1/release/link-static/threading-multi/libboost_iostreams.a"; sourceTree = ""; }; 48B662011BBB1B6600997EE4 /* testrenameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testrenameseqscommand.cpp; path = testcommands/testrenameseqscommand.cpp; sourceTree = ""; }; 48B662021BBB1B6600997EE4 /* testrenameseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testrenameseqscommand.h; path = testcommands/testrenameseqscommand.h; sourceTree = ""; }; 48C51DEE1A76B870004ECDF1 /* fastqread.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = fastqread.h; path = source/datastructures/fastqread.h; sourceTree = ""; }; @@ -1735,7 +1734,6 @@ 08FB7794FE84155DC02AAC07 /* mothur */ = { isa = PBXGroup; children = ( - 48A52FE71BC5899A00548F6C /* libboost_iostreams.a */, 48A52FE31BC44D2900548F6C /* libcpu_sse2.a */, 48A52FE41BC44D2900548F6C /* libcpu_ssse3.a */, 08FB7795FE84155DC02AAC07 /* Source */, @@ -3740,7 +3738,6 @@ ); OTHER_LDFLAGS = ( "-lreadline", - "-lncurses", "-lboost_iostreams", "-lz", ); @@ -3790,7 +3787,6 @@ ); OTHER_LDFLAGS = ( "-lreadline", - "-lncurses", "-lboost_iostreams", "-lz", ); From 34004d218950b7b1d2a5ff3efb66044f9f202aa3 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 12 Oct 2015 13:35:00 -0400 Subject: [PATCH 058/135] Adds fasta, agc/dgc to cluster constructors Issue #169 --- source/commands/clustercommand.cpp | 51 +++++++++++++++++++++++++++----------- source/commands/clustercommand.h | 2 +- 2 files changed, 38 insertions(+), 15 deletions(-) diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 367e33de..ade3018e 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -17,13 +17,14 @@ //********************************************************************************************************************** vector ClusterCommand::setParameters(){ try { - CommandParameter pphylip("phylip", "InputTypes", "", "", "PhylipColumn", "PhylipColumn", "none","list",false,false,true); parameters.push_back(pphylip); - CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "ColumnName","rabund-sabund",false,false,true); parameters.push_back(pname); - CommandParameter pcount("count", "InputTypes", "", "", "NameCount", "none", "none","",false,false,true); parameters.push_back(pcount); - CommandParameter pcolumn("column", "InputTypes", "", "", "PhylipColumn", "PhylipColumn", "ColumnName","list",false,false,true); parameters.push_back(pcolumn); + CommandParameter pphylip("phylip", "InputTypes", "", "", "PhylipColumnFasta", "PhylipColumnFasta", "none","list",false,false,true); parameters.push_back(pphylip); + CommandParameter pfasta("fasta", "InputTypes", "", "", "PhylipColumnFasta", "PhylipColumnFasta", "FastaTaxName","list",false,false,true); parameters.push_back(pfasta); + CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "ColumnName-FastaTaxName","rabund-sabund",false,false,true); parameters.push_back(pname); + CommandParameter pcount("count", "InputTypes", "", "", "NameCount", "none", "","",false,false,true); parameters.push_back(pcount); + CommandParameter pcolumn("column", "InputTypes", "", "", "PhylipColumnFasta", "PhylipColumnFasta", "ColumnName","list",false,false,true); parameters.push_back(pcolumn); CommandParameter pcutoff("cutoff", "Number", "", "10", "", "", "","",false,false,true); parameters.push_back(pcutoff); CommandParameter pprecision("precision", "Number", "", "100", "", "", "","",false,false); parameters.push_back(pprecision); - CommandParameter pmethod("method", "Multiple", "furthest-nearest-average-weighted", "average", "", "", "","",false,false,true); parameters.push_back(pmethod); + CommandParameter pmethod("method", "Multiple", "furthest-nearest-average-weighted-agc-dgc", "average", "", "", "","",false,false,true); parameters.push_back(pmethod); CommandParameter pshowabund("showabund", "Boolean", "", "T", "", "", "","",false,false); parameters.push_back(pshowabund); CommandParameter ptiming("timing", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(ptiming); CommandParameter psim("sim", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(psim); @@ -46,8 +47,13 @@ vector ClusterCommand::setParameters(){ string ClusterCommand::getHelpString(){ try { string helpString = ""; - helpString += "The cluster command parameter options are phylip, column, name, count, method, cuttoff, hard, precision, sim, showabund and timing. Phylip or column and name are required, unless you have a valid current file.\n"; + helpString += "The cluster command parameter options are phylip, column, name, count, method, cuttoff, hard, precision, sim, showabund and timing. Fasta or Phylip or column and name are required.\n"; //helpString += "The adjust parameter is used to handle missing distances. If you set a cutoff, adjust=f by default. If not, adjust=t by default. Adjust=f, means ignore missing distances and adjust cutoff as needed with the average neighbor method. Adjust=t, will treat missing distances as 1.0. You can also set the value the missing distances should be set to, adjust=0.5 would give missing distances a value of 0.5.\n"; + helpString += "The phylip and column parameter allow you to enter your distance file. \n"; + helpString += "The fasta parameter allows you to enter your fasta file for use with the agc or dgc methods. \n"; + helpString += "The name parameter allows you to enter your name file. \n"; + helpString += "The count parameter allows you to enter your count file. \n A count or name file is required if your distance file is in column format.\n"; + helpString += "The method parameter allows you to enter your clustering mothod. Options are furthest, nearest, average, weighted, agc and dgc. Default=average. The agc and dgc methods require a fasta file."; helpString += "The cluster command should be in the following format: \n"; helpString += "cluster(method=yourMethod, cutoff=yourCutoff, precision=yourPrecision) \n"; helpString += "The acceptable cluster methods are furthest, nearest, average and weighted. If no method is provided then average is assumed.\n"; @@ -94,7 +100,7 @@ ClusterCommand::ClusterCommand(){ //This function checks to make sure the cluster command has no errors and then clusters based on the method chosen. ClusterCommand::ClusterCommand(string option) { try{ - abort = false; calledHelp = false; + abort = false; calledHelp = false; //allow user to run help if(option == "help") { help(); abort = true; calledHelp = true; } @@ -160,6 +166,14 @@ ClusterCommand::ClusterCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["count"] = inputDir + it->second; } } + + it = parameters.find("fasta"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["fasta"] = inputDir + it->second; } + } } //check for required parameters @@ -173,6 +187,11 @@ ClusterCommand::ClusterCommand(string option) { else if (columnfile == "not found") { columnfile = ""; } else { distfile = columnfile; format = "column"; m->setColumnFile(columnfile); } + fastafile = validParameter.validFile(parameters, "fasta", true); + if (fastafile == "not open") { abort = true; } + else if (fastafile == "not found") { fastafile = ""; } + else { distfile = fastafile; format = "fasta"; m->setFastaFile(fastafile); } + namefile = validParameter.validFile(parameters, "name", true); if (namefile == "not open") { abort = true; } else if (namefile == "not found") { namefile = ""; } @@ -183,7 +202,7 @@ ClusterCommand::ClusterCommand(string option) { else if (countfile == "not found") { countfile = ""; } else { m->setCountTableFile(countfile); } - if ((phylipfile == "") && (columnfile == "")) { + if ((phylipfile == "") && (columnfile == "") && (fastafile == "")) { //is there are current file available for either of these? //give priority to column, then phylip columnfile = m->getColumnFile(); @@ -191,13 +210,17 @@ ClusterCommand::ClusterCommand(string option) { else { phylipfile = m->getPhylipFile(); if (phylipfile != "") { distfile = phylipfile; format = "phylip"; m->mothurOut("Using " + phylipfile + " as input file for the phylip parameter."); m->mothurOutEndLine(); } - else { - m->mothurOut("No valid current files. You must provide a phylip or column file before you can use the cluster command."); m->mothurOutEndLine(); - abort = true; + else { + fastafile = m->getFastaFile(); + if (fastafile != "") { distfile = fastafile; format = "fasta"; m->mothurOut("Using " + fastafile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } + else { + m->mothurOut("No valid current files. You must provide a phylip, column or fasta file before you can use the cluster command."); m->mothurOutEndLine(); + abort = true; + } } } } - else if ((phylipfile != "") && (columnfile != "")) { m->mothurOut("When executing a cluster command you must enter ONLY ONE of the following: phylip or column."); m->mothurOutEndLine(); abort = true; } + else if (((phylipfile != "") && (columnfile != "")) || ((phylipfile != "") && (fastafile != "")) || ((fastafile != "") && (columnfile != ""))) { m->mothurOut("When executing a cluster command you must enter ONLY ONE of the following: phylip, column or fasta."); m->mothurOutEndLine(); abort = true; } if (columnfile != "") { if ((namefile == "") && (countfile == "")){ @@ -248,8 +271,8 @@ ClusterCommand::ClusterCommand(string option) { method = validParameter.validFile(parameters, "method", false); if (method == "not found") { method = "average"; } - if ((method == "furthest") || (method == "nearest") || (method == "average") || (method == "weighted")) { } - else { m->mothurOut("Not a valid clustering method. Valid clustering algorithms are furthest, nearest, average, and weighted."); m->mothurOutEndLine(); abort = true; } + if ((method == "furthest") || (method == "nearest") || (method == "average") || (method == "weighted") || (method == "agc") || (method == "dgc")) { } + else { m->mothurOut("Not a valid clustering method. Valid clustering algorithms are furthest, nearest, average, weighted, agc and dgc."); m->mothurOutEndLine(); abort = true; } showabund = validParameter.validFile(parameters, "showabund", false); if (showabund == "not found") { showabund = "T"; } diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index a2371d0e..2b68ad92 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -54,7 +54,7 @@ class ClusterCommand : public Command { bool abort, hard, sim; - string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile; + string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile; double cutoff; float adjust; string showabund, timing; From 25009cb48278b901f25ed0ceb2e89e374b0bc74c Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 12 Oct 2015 13:43:05 -0400 Subject: [PATCH 059/135] Create function for mothurCluster Issue #169 --- source/commands/clustercommand.cpp | 306 +++++++++++++++++++------------------ source/commands/clustercommand.h | 2 + 2 files changed, 162 insertions(+), 146 deletions(-) diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index ade3018e..2319b02b 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -325,52 +325,97 @@ int ClusterCommand::execute(){ return 0; } - ReadMatrix* read; - if (format == "column") { read = new ReadColumnMatrix(columnfile, sim); } //sim indicates whether its a similarity matrix - else if (format == "phylip") { read = new ReadPhylipMatrix(phylipfile, sim); } + time_t estart = time(NULL); + + if (format == "fasta") { runVsearchCluster(); } + else { runMothurCluster(); } + + if (m->control_pressed) { for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } + + m->mothurOut("It took " + toString(time(NULL) - estart) + " seconds to cluster"); m->mothurOutEndLine(); + + //set list file as new current listfile + string current = ""; + itTypes = outputTypes.find("list"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setListFile(current); } + } - read->setCutoff(cutoff); + //set rabund file as new current rabundfile + itTypes = outputTypes.find("rabund"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setRabundFile(current); } + } - NameAssignment* nameMap = NULL; + //set sabund file as new current sabundfile + itTypes = outputTypes.find("sabund"); + if (itTypes != outputTypes.end()) { + if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setSabundFile(current); } + } + + m->mothurOutEndLine(); + m->mothurOut("Output File Names: "); m->mothurOutEndLine(); + for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } + m->mothurOutEndLine(); + + return 0; + } + catch(exception& e) { + m->errorOut(e, "ClusterCommand", "execute"); + exit(1); + } +} +//********************************************************************************************************************** + +int ClusterCommand::runMothurCluster(){ + try { + + ReadMatrix* read; + if (format == "column") { read = new ReadColumnMatrix(columnfile, sim); } //sim indicates whether its a similarity matrix + else if (format == "phylip") { read = new ReadPhylipMatrix(phylipfile, sim); } + + read->setCutoff(cutoff); + + NameAssignment* nameMap = NULL; CountTable* ct = NULL; map counts; - if(namefile != ""){ - nameMap = new NameAssignment(namefile); - nameMap->readMap(); + if(namefile != ""){ + nameMap = new NameAssignment(namefile); + nameMap->readMap(); read->read(nameMap); - }else if (countfile != "") { + }else if (countfile != "") { ct = new CountTable(); ct->readTable(countfile, false, false); read->read(ct); counts = ct->getNameMap(); }else { read->read(nameMap); } - - list = read->getListVector(); - matrix = read->getDMatrix(); - if(countfile != "") { + list = read->getListVector(); + matrix = read->getDMatrix(); + + if(countfile != "") { rabund = new RAbundVector(); createRabund(ct, list, rabund); //creates an rabund that includes the counts for the unique list delete ct; }else { rabund = new RAbundVector(list->getRAbundVector()); } - delete read; - - if (m->control_pressed) { //clean up - delete list; delete matrix; delete rabund; if(countfile == ""){rabundFile.close(); sabundFile.close(); m->mothurRemove((fileroot+ tag + ".rabund")); m->mothurRemove((fileroot+ tag + ".sabund")); } - listFile.close(); m->mothurRemove((fileroot+ tag + ".list")); outputTypes.clear(); return 0; - } - - //create cluster - if (method == "furthest") { cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method, adjust); } - else if(method == "nearest"){ cluster = new SingleLinkage(rabund, list, matrix, cutoff, method, adjust); } - else if(method == "average"){ cluster = new AverageLinkage(rabund, list, matrix, cutoff, method, adjust); } - else if(method == "weighted"){ cluster = new WeightedLinkage(rabund, list, matrix, cutoff, method, adjust); } - tag = cluster->getTag(); - - if (outputDir == "") { outputDir += m->hasPath(distfile); } - fileroot = outputDir + m->getRootName(m->getSimpleName(distfile)); - - map variables; + delete read; + + if (m->control_pressed) { //clean up + delete list; delete matrix; delete rabund; if(countfile == ""){rabundFile.close(); sabundFile.close(); m->mothurRemove((fileroot+ tag + ".rabund")); m->mothurRemove((fileroot+ tag + ".sabund")); } + listFile.close(); m->mothurRemove((fileroot+ tag + ".list")); outputTypes.clear(); return 0; + } + + //create cluster + if (method == "furthest") { cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method, adjust); } + else if(method == "nearest"){ cluster = new SingleLinkage(rabund, list, matrix, cutoff, method, adjust); } + else if(method == "average"){ cluster = new AverageLinkage(rabund, list, matrix, cutoff, method, adjust); } + else if(method == "weighted"){ cluster = new WeightedLinkage(rabund, list, matrix, cutoff, method, adjust); } + tag = cluster->getTag(); + + if (outputDir == "") { outputDir += m->hasPath(distfile); } + fileroot = outputDir + m->getRootName(m->getSimpleName(distfile)); + + map variables; variables["[filename]"] = fileroot; variables["[clustertag]"] = tag; string sabundFileName = getOutputFileName("sabund", variables); @@ -383,133 +428,102 @@ int ClusterCommand::execute(){ m->openOutputFile(rabundFileName, rabundFile); outputNames.push_back(sabundFileName); outputTypes["sabund"].push_back(sabundFileName); outputNames.push_back(rabundFileName); outputTypes["rabund"].push_back(rabundFileName); - + } - m->openOutputFile(listFileName, listFile); + m->openOutputFile(listFileName, listFile); outputNames.push_back(listFileName); outputTypes["list"].push_back(listFileName); list->printHeaders(listFile); - - time_t estart = time(NULL); - float previousDist = 0.00000; - float rndPreviousDist = 0.00000; - oldRAbund = *rabund; - oldList = *list; - - print_start = true; - start = time(NULL); - loops = 0; - double saveCutoff = cutoff; - - while (matrix->getSmallDist() < cutoff && matrix->getNNodes() > 0){ - - if (m->control_pressed) { //clean up - delete list; delete matrix; delete rabund; delete cluster; - if(countfile == "") {rabundFile.close(); sabundFile.close(); m->mothurRemove((fileroot+ tag + ".rabund")); m->mothurRemove((fileroot+ tag + ".sabund")); } + + + float previousDist = 0.00000; + float rndPreviousDist = 0.00000; + oldRAbund = *rabund; + oldList = *list; + + print_start = true; + start = time(NULL); + loops = 0; + double saveCutoff = cutoff; + + while (matrix->getSmallDist() < cutoff && matrix->getNNodes() > 0){ + + if (m->control_pressed) { //clean up + delete list; delete matrix; delete rabund; delete cluster; + if(countfile == "") {rabundFile.close(); sabundFile.close(); m->mothurRemove((fileroot+ tag + ".rabund")); m->mothurRemove((fileroot+ tag + ".sabund")); } listFile.close(); m->mothurRemove((fileroot+ tag + ".list")); outputTypes.clear(); return 0; - } - - if (print_start && m->isTrue(timing)) { - m->mothurOut("Clustering (" + tag + ") dist " + toString(matrix->getSmallDist()) + "/" - + toString(m->roundDist(matrix->getSmallDist(), precision)) - + "\t(precision: " + toString(precision) + ", Nodes: " + toString(matrix->getNNodes()) + ")"); - cout.flush(); - print_start = false; - } - - loops++; - - cluster->update(cutoff); + } + + if (print_start && m->isTrue(timing)) { + m->mothurOut("Clustering (" + tag + ") dist " + toString(matrix->getSmallDist()) + "/" + + toString(m->roundDist(matrix->getSmallDist(), precision)) + + "\t(precision: " + toString(precision) + ", Nodes: " + toString(matrix->getNNodes()) + ")"); + cout.flush(); + print_start = false; + } + + loops++; + + cluster->update(cutoff); float dist = matrix->getSmallDist(); - float rndDist; - if (hard) { - rndDist = m->ceilDist(dist, precision); - }else{ - rndDist = m->roundDist(dist, precision); - } - - if(previousDist <= 0.0000 && dist != previousDist){ - printData("unique", counts); - } - else if(rndDist != rndPreviousDist){ - printData(toString(rndPreviousDist, length-1), counts); - } - - previousDist = dist; - rndPreviousDist = rndDist; - oldRAbund = *rabund; - oldList = *list; - } - - if (print_start && m->isTrue(timing)) { - m->mothurOut("Clustering (" + tag + ") for distance " + toString(previousDist) + "/" + toString(rndPreviousDist) - + "\t(precision: " + toString(precision) + ", Nodes: " + toString(matrix->getNNodes()) + ")"); - cout.flush(); - print_start = false; - } - - if(previousDist <= 0.0000){ - printData("unique", counts); - } - else if(rndPreviousDistceilDist(dist, precision); + }else{ + rndDist = m->roundDist(dist, precision); + } + + if(previousDist <= 0.0000 && dist != previousDist){ + printData("unique", counts); + } + else if(rndDist != rndPreviousDist){ + printData(toString(rndPreviousDist, length-1), counts); + } + + previousDist = dist; + rndPreviousDist = rndDist; + oldRAbund = *rabund; + oldList = *list; + } + + if (print_start && m->isTrue(timing)) { + m->mothurOut("Clustering (" + tag + ") for distance " + toString(previousDist) + "/" + toString(rndPreviousDist) + + "\t(precision: " + toString(precision) + ", Nodes: " + toString(matrix->getNNodes()) + ")"); + cout.flush(); + print_start = false; + } + + if(previousDist <= 0.0000){ + printData("unique", counts); + } + else if(rndPreviousDistceilDist(saveCutoff, precision); } - else { saveCutoff = m->roundDist(saveCutoff, precision); } - - m->mothurOut("changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); - } - - //set list file as new current listfile - string current = ""; - itTypes = outputTypes.find("list"); - if (itTypes != outputTypes.end()) { - if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setListFile(current); } - } - - //set rabund file as new current rabundfile - itTypes = outputTypes.find("rabund"); - if (itTypes != outputTypes.end()) { - if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setRabundFile(current); } - } - - //set sabund file as new current sabundfile - itTypes = outputTypes.find("sabund"); - if (itTypes != outputTypes.end()) { - if ((itTypes->second).size() != 0) { current = (itTypes->second)[0]; m->setSabundFile(current); } - } - - m->mothurOutEndLine(); - m->mothurOut("Output File Names: "); m->mothurOutEndLine(); - for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } - m->mothurOutEndLine(); + listFile.close(); + + if (saveCutoff != cutoff) { + if (hard) { saveCutoff = m->ceilDist(saveCutoff, precision); } + else { saveCutoff = m->roundDist(saveCutoff, precision); } + + m->mothurOut("changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); + } - - //if (m->isTrue(timing)) { - m->mothurOut("It took " + toString(time(NULL) - estart) + " seconds to cluster"); m->mothurOutEndLine(); - //} - - - return 0; - } - catch(exception& e) { - m->errorOut(e, "ClusterCommand", "execute"); - exit(1); - } + return 0; + } + catch(exception& e) { + m->errorOut(e, "ClusterCommand", "runMothurCluster"); + exit(1); + } } - //********************************************************************************************************************** void ClusterCommand::printData(string label, map& counts){ diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index 2b68ad92..b42af31d 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -69,6 +69,8 @@ class ClusterCommand : public Command { vector outputNames; int createRabund(CountTable*&, ListVector*&, RAbundVector*&); + int runVsearchCluster(); + int runMothurCluster(); }; #endif From a7d128908fcb3caf0f12ad58476586bb81982b61 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 12 Oct 2015 14:55:11 -0400 Subject: [PATCH 060/135] Adds file prep needed to run vsearch methods Issue #169 --- source/commands/chimerauchimecommand.cpp | 26 +------ source/commands/chimerauchimecommand.h | 1 - source/commands/clustercommand.cpp | 114 ++++++++++++++++++++++++++++++- source/commands/clustercommand.h | 2 + source/datastructures/counttable.h | 2 +- source/mothurout.cpp | 24 ++++++- source/mothurout.h | 1 + 7 files changed, 142 insertions(+), 28 deletions(-) diff --git a/source/commands/chimerauchimecommand.cpp b/source/commands/chimerauchimecommand.cpp index 317dbb73..006d1d11 100644 --- a/source/commands/chimerauchimecommand.cpp +++ b/source/commands/chimerauchimecommand.cpp @@ -690,7 +690,7 @@ int ChimeraUchimeCommand::execute(){ if (error == 1) { for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } if (seqs.size() != nameMapCount.size()) { m->mothurOut( "The number of sequences in your fastafile does not match the number of sequences in your namefile, aborting."); m->mothurOutEndLine(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } return 0; } - printFile(nameMapCount, newFasta); + m->printVsearchFile(nameMapCount, newFasta); fastaFileNames[s] = newFasta; } @@ -1099,29 +1099,7 @@ int ChimeraUchimeCommand::deconvoluteResults(map& uniqueNames, s m->errorOut(e, "ChimeraUchimeCommand", "deconvoluteResults"); exit(1); } -} -//********************************************************************************************************************** -int ChimeraUchimeCommand::printFile(vector& nameMapCount, string filename){ - try { - - sort(nameMapCount.begin(), nameMapCount.end(), compareSeqPriorityNodes); - - ofstream out; - m->openOutputFile(filename, out); - - //print new file in order of - for (int i = 0; i < nameMapCount.size(); i++) { - out << ">" << nameMapCount[i].name << "/ab=" << nameMapCount[i].numIdentical << "/" << endl << nameMapCount[i].seq << endl; - } - out.close(); - - return 0; - } - catch(exception& e) { - m->errorOut(e, "ChimeraUchimeCommand", "printFile"); - exit(1); - } -} +} //********************************************************************************************************************** int ChimeraUchimeCommand::readFasta(string filename, map& seqs){ try { diff --git a/source/commands/chimerauchimecommand.h b/source/commands/chimerauchimecommand.h index bfad5be9..5ba479c8 100644 --- a/source/commands/chimerauchimecommand.h +++ b/source/commands/chimerauchimecommand.h @@ -55,7 +55,6 @@ class ChimeraUchimeCommand : public Command { string getNamesFile(string&); int readFasta(string, map&); - int printFile(vector&, string); int deconvoluteResults(map&, string, string, string); int driverGroups(string, string, string, string, string, int, int, vector); int createProcessesGroups(string, string, string, string, string, vector, string, string, string); diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 2319b02b..5ee48f2a 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -12,7 +12,8 @@ #include "readcolumn.h" #include "readmatrix.hpp" #include "clusterdoturcommand.h" - +#include "deconvolutecommand.h" +#include "sequence.hpp" //********************************************************************************************************************** vector ClusterCommand::setParameters(){ @@ -367,6 +368,82 @@ int ClusterCommand::execute(){ } //********************************************************************************************************************** +int ClusterCommand::runVsearchCluster(){ + try { + + //Run unique.seqs on the data if a name or count file is not given + map nameMap; + if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } + else if (namefile != "") { nameMap = m->readNames(namefile); } + + if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); nameMap = countTable.getNameMap(); } + + if (m->control_pressed) { return 0; } + + //Remove gap characters from each sequence if needed + //Append the number of sequences that each unique sequence represents to the end of the fasta file name + //Sorts by abundance + string vsearchFastafile = createVsearchFasta(fastafile, nameMap); + + if (m->control_pressed) { return 0; } + + + + //Run vsearch + + //Convert outputted *.uc file into a list file + + + return 0; + } + catch(exception& e) { + m->errorOut(e, "ClusterCommand", "runVsearchCluster"); + exit(1); + } +} +//********************************************************************************************************************** + +string ClusterCommand::createVsearchFasta(string inputFile, map& nameMap){ + try { + string vsearchFasta = m->getSimpleName(fastafile) + ".uc_sorted.temp"; + + vector seqs; + map::iterator it; + + ifstream in; + m->openInputFile(inputFile, in); + + while (!in.eof()) { + + if (m->control_pressed) { in.close(); return vsearchFasta; } + + Sequence seq(in); m->gobble(in); + + it = nameMap.find(seq.getName()); + if (it == nameMap.end()) { + + }else { + seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); + seqs.push_back(temp); + nameMap.erase(it); + } + + } + in.close(); + + m->printVsearchFile(seqs, vsearchFasta); + + return vsearchFasta; + } + catch(exception& e) { + m->errorOut(e, "ClusterCommand", "createVsearchFasta"); + exit(1); + } +} + + +//********************************************************************************************************************** + int ClusterCommand::runMothurCluster(){ try { @@ -562,6 +639,41 @@ void ClusterCommand::printData(string label, map& counts){ } //********************************************************************************************************************** +string ClusterCommand::getNamesFile(string& inputFile){ + try { + string nameFile = ""; + + m->mothurOutEndLine(); m->mothurOut("No namesfile given, running unique.seqs command to generate one."); m->mothurOutEndLine(); m->mothurOutEndLine(); + + //use unique.seqs to create new name and fastafile + string inputString = "fasta=" + inputFile + ", format=count"; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* uniqueCommand = new DeconvoluteCommand(inputString); + uniqueCommand->execute(); + + map > filenames = uniqueCommand->getOutputFiles(); + + delete uniqueCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + countfile = filenames["count"][0]; + fastafile = filenames["fasta"][0]; + distfile = fastafile; + + return nameFile; + } + catch(exception& e) { + m->errorOut(e, "ClusterCommand", "getNamesFile"); + exit(1); + } +} + +//********************************************************************************************************************** + int ClusterCommand::createRabund(CountTable*& ct, ListVector*& list, RAbundVector*& rabund){ try { rabund->setLabel(list->getLabel()); diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index b42af31d..4c5f02be 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -69,6 +69,8 @@ class ClusterCommand : public Command { vector outputNames; int createRabund(CountTable*&, ListVector*&, RAbundVector*&); + string getNamesFile(string& inputFile); + string createVsearchFasta(string, map&); int runVsearchCluster(); int runMothurCluster(); }; diff --git a/source/datastructures/counttable.h b/source/datastructures/counttable.h index 66f0fb3d..8daaa346 100644 --- a/source/datastructures/counttable.h +++ b/source/datastructures/counttable.h @@ -87,7 +87,7 @@ class CountTable { vector getNamesOfSeqs(string); int mergeCounts(string, string); //combines counts for 2 seqs, saving under the first name passed in. ListVector getListVector(); - map getNameMap(); + map getNameMap(); //sequenceName -> total number of sequences it represents private: string filename; diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 8b492963..308532ef 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -4739,7 +4739,29 @@ int MothurOut::min(int A, int B){ exit(1); } } - +//********************************************************************************************************************** +int MothurOut::printVsearchFile(vector& nameMapCount, string filename){ + try { + + sort(nameMapCount.begin(), nameMapCount.end(), compareSeqPriorityNodes); + + ofstream out; + openOutputFile(filename, out); + + //print new file in order of + for (int i = 0; i < nameMapCount.size(); i++) { + if (control_pressed) {break;} + out << ">" << nameMapCount[i].name << "/ab=" << nameMapCount[i].numIdentical << "/" << endl << nameMapCount[i].seq << endl; + } + out.close(); + + return 0; + } + catch(exception& e) { + errorOut(e, "MothurOut", "printVsearchFile"); + exit(1); + } +} /**************************************************************************************************/ diff --git a/source/mothurout.h b/source/mothurout.h index 80d2dca0..ae3e432d 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -140,6 +140,7 @@ class MothurOut { int readNames(string, map >&); int readNames(string, vector&, map&); int mothurRemove(string); + int printVsearchFile(vector&, string); //sorts and prints by abundance adding /ab=xxx/ bool mothurConvert(string, int&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. bool mothurConvert(string, intDist&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. bool mothurConvert(string, float&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. From 1d87f7ebb8d6b24f6e1d86d1a2211f5fcd073e58 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 12 Oct 2015 16:16:37 -0400 Subject: [PATCH 061/135] Adds vsearch driver to cluster command Issue #169 --- source/commands/clustercommand.cpp | 96 ++++++++++++++++++++++++++++++++++++-- source/commands/clustercommand.h | 1 + 2 files changed, 93 insertions(+), 4 deletions(-) diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 5ee48f2a..1bb57fc7 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -14,6 +14,7 @@ #include "clusterdoturcommand.h" #include "deconvolutecommand.h" #include "sequence.hpp" +#include "vsearch.h" //********************************************************************************************************************** vector ClusterCommand::setParameters(){ @@ -383,13 +384,21 @@ int ClusterCommand::runVsearchCluster(){ //Remove gap characters from each sequence if needed //Append the number of sequences that each unique sequence represents to the end of the fasta file name //Sorts by abundance - string vsearchFastafile = createVsearchFasta(fastafile, nameMap); + string vsearchFastafile = createVsearchFasta(fastafile, nameMap); nameMap.clear(); if (m->control_pressed) { return 0; } - + if (cutoff > 1.0) { m->mothurOut("You did not set a cutoff, using 0.20.\n"); cutoff = 0.20; } //Run vsearch + string ucVsearchFile = m->getSimpleName(vsearchFastafile) + ".clustered.uc"; + string logfile = m->getSimpleName(vsearchFastafile) + ".clustered.log"; + vsearchDriver(vsearchFastafile, ucVsearchFile, logfile); + + if (m->control_pressed) { + ////////////////////////remove files///////////////////// + return 0; + } //Convert outputted *.uc file into a list file @@ -403,9 +412,88 @@ int ClusterCommand::runVsearchCluster(){ } //********************************************************************************************************************** +int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, string logfile){ + try { + + //vsearch --maxaccepts 16 --usersort --id 0.97 --minseqlength 30 --wordlength 8 --uc $ROOT.clustered.uc --cluster_smallmem $ROOT.sorted.fna --maxrejects 64 --strand both --log $ROOT.clustered.log --sizeorder + + + int numArgs = 11; + char** vsearchParameters; + vsearchParameters = new char*[numArgs]; + + vsearchParameters[0] = new char[8]; + *vsearchParameters[0] = '\0'; strncat(vsearchParameters[0], "vsearch", 7); + + int parameterCount = 1; + //--maxaccepts 16 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts 16", 15); parameterCount++; + + //--usersort + vsearchParameters[parameterCount] = new char[11]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--usersort", 10); parameterCount++; + + + cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); + if (cutoffString.length() > 4) { cutoffString = cutoffString.substr(0, 4); } + else if (cutoffString.length() < 4) { for (int i = cutoffString.length(); i < 4; i++) { cutoffString += "0"; } } + cutoffString = "--id " + cutoffString; + + //--id 0.97 + vsearchParameters[parameterCount] = new char[10]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), 9); parameterCount++; + + //--minseqlength 30 + vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength 30", 17); parameterCount++; + + //--wordlength 8 + vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength 8", 14); parameterCount++; + + //--uc $ROOT.clustered.uc + string tempIn = "--uc " + ucClusteredFile; + vsearchParameters[parameterCount] = new char[tempIn.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); + parameterCount++; + + //--cluster_smallmem $ROOT.sorted.fna + tempIn = "--cluster_smallmem " + inputFile; + vsearchParameters[parameterCount] = new char[tempIn.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); + parameterCount++; + + //--maxrejects 64 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects 64", 15); parameterCount++; + + //--strand both + vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand both", 13); parameterCount++; + + //--log $ROOT.clustered.log + tempIn = "--log " + logfile; + vsearchParameters[parameterCount] = new char[tempIn.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); + parameterCount++; + + //--sizeorder + vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + + errno = 0; + vsearch_main(numArgs, vsearchParameters); + + //free memory + for(int i = 0; i < numArgs; i++) { delete[] vsearchParameters[i]; } + delete[] vsearchParameters; + + return 0; + } + catch(exception& e) { + m->errorOut(e, "ClusterCommand", "vsearchDriver"); + exit(1); + } +} + +//********************************************************************************************************************** + string ClusterCommand::createVsearchFasta(string inputFile, map& nameMap){ try { - string vsearchFasta = m->getSimpleName(fastafile) + ".uc_sorted.temp"; + string vsearchFasta = m->getSimpleName(fastafile) + method + ".sorted.fasta"; vector seqs; map::iterator it; @@ -421,7 +509,7 @@ string ClusterCommand::createVsearchFasta(string inputFile, map& na it = nameMap.find(seq.getName()); if (it == nameMap.end()) { - + m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name or countfile, quitting.\n"); m->control_pressed = true; }else { seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); seqs.push_back(temp); diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index 4c5f02be..67a8b609 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -71,6 +71,7 @@ class ClusterCommand : public Command { int createRabund(CountTable*&, ListVector*&, RAbundVector*&); string getNamesFile(string& inputFile); string createVsearchFasta(string, map&); + int vsearchDriver(string, string, string); int runVsearchCluster(); int runMothurCluster(); }; From d5022266291579c6ceaa932d28944ed360bdf0a7 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 13 Oct 2015 13:56:25 -0400 Subject: [PATCH 062/135] Fixed bug caused by change to check for dup names in get/remove.seqs Issue #159 --- source/commands/getseqscommand.cpp | 3 ++- source/commands/removeseqscommand.cpp | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/source/commands/getseqscommand.cpp b/source/commands/getseqscommand.cpp index c6d08bb7..0e680f4a 100644 --- a/source/commands/getseqscommand.cpp +++ b/source/commands/getseqscommand.cpp @@ -729,9 +729,10 @@ int GetSeqsCommand::readList(){ if (m->debug) { set temp; sanity["list"] = temp; } - set uniqueNames; + while(!in.eof()){ + set uniqueNames; selectedCount = 0; //read in list vector diff --git a/source/commands/removeseqscommand.cpp b/source/commands/removeseqscommand.cpp index 3f17fa02..71abde1f 100644 --- a/source/commands/removeseqscommand.cpp +++ b/source/commands/removeseqscommand.cpp @@ -696,10 +696,11 @@ int RemoveSeqsCommand::readList(){ bool wroteSomething = false; int removedCount = 0; - set uniqueNames; + while(!in.eof()){ removedCount = 0; + set uniqueNames; //read in list vector ListVector list(in); From 9f653f5cedf61acb58913c73c149049d34445422 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 14 Oct 2015 14:09:11 -0400 Subject: [PATCH 063/135] Created vsearchFileParser class to encapsulate code Issue #169 --- Mothur.xcodeproj/project.pbxproj | 6 ++ source/commands/clustercommand.cpp | 107 +++-------------------- source/commands/clustercommand.h | 2 - source/mothur.h | 1 - source/vsearch_src/vsearchfileparser.cpp | 142 +++++++++++++++++++++++++++++++ source/vsearch_src/vsearchfileparser.h | 38 +++++++++ 6 files changed, 199 insertions(+), 97 deletions(-) create mode 100644 source/vsearch_src/vsearchfileparser.cpp create mode 100644 source/vsearch_src/vsearchfileparser.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index e153eb04..aef82ddc 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -380,6 +380,7 @@ 48705AC819BE32C50075E977 /* abstractrandomforest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48705AC319BE32C50075E977 /* abstractrandomforest.cpp */; }; 487C5A871AB88B93002AF48A /* mimarksattributescommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */; }; 4893DE2918EEF28100C615DF /* (null) in Sources */ = {isa = PBXBuildFile; }; + 489B55721BCD7F0100FB7DC8 /* vsearchfileparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */; }; 48A52F9A1BC428DF00548F6C /* abundance.cc in Sources */ = {isa = PBXBuildFile; fileRef = 48A52F4D1BC428DF00548F6C /* abundance.cc */; }; 48A52F9B1BC428DF00548F6C /* abundance.cc in Sources */ = {isa = PBXBuildFile; fileRef = 48A52F4D1BC428DF00548F6C /* abundance.cc */; }; 48A52F9C1BC428DF00548F6C /* align_simd.cc in Sources */ = {isa = PBXBuildFile; fileRef = 48A52F4F1BC428DF00548F6C /* align_simd.cc */; }; @@ -892,6 +893,8 @@ 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mimarksattributescommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/mimarksattributescommand.cpp; sourceTree = ""; }; 487C5A861AB88B93002AF48A /* mimarksattributescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mimarksattributescommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/mimarksattributescommand.h; sourceTree = ""; }; 48844B261AA74AF9006EF2B8 /* compare.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = compare.h; path = source/datastructures/compare.h; sourceTree = ""; }; + 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = vsearchfileparser.cpp; path = source/vsearch_src/vsearchfileparser.cpp; sourceTree = ""; }; + 489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = vsearchfileparser.h; path = source/vsearch_src/vsearchfileparser.h; sourceTree = ""; }; 48A52F4D1BC428DF00548F6C /* abundance.cc */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = abundance.cc; path = source/vsearch_src/abundance.cc; sourceTree = ""; }; 48A52F4E1BC428DF00548F6C /* abundance.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = abundance.h; path = source/vsearch_src/abundance.h; sourceTree = ""; }; 48A52F4F1BC428DF00548F6C /* align_simd.cc */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = align_simd.cc; path = source/vsearch_src/align_simd.cc; sourceTree = ""; }; @@ -1983,6 +1986,8 @@ 48A52F961BC428DF00548F6C /* util.h */, 48A52F971BC428DF00548F6C /* vsearch.cc */, 48A52F981BC428DF00548F6C /* vsearch.h */, + 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */, + 489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */, 48A52F991BC428DF00548F6C /* xstring.h */, ); name = vsearch; @@ -3437,6 +3442,7 @@ 48A52FC61BC428DF00548F6C /* msa.cc in Sources */, A7E9B93C12D37EC400DA6239 /* seqerrorcommand.cpp in Sources */, 48A52FC21BC428DF00548F6C /* md5.c in Sources */, + 489B55721BCD7F0100FB7DC8 /* vsearchfileparser.cpp in Sources */, A7E9B93D12D37EC400DA6239 /* seqsummarycommand.cpp in Sources */, A7E9B93E12D37EC400DA6239 /* sequence.cpp in Sources */, A7E9B93F12D37EC400DA6239 /* sequencedb.cpp in Sources */, diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 1bb57fc7..82b407b8 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -15,6 +15,7 @@ #include "deconvolutecommand.h" #include "sequence.hpp" #include "vsearch.h" +#include "vsearchfileparser.h" //********************************************************************************************************************** vector ClusterCommand::setParameters(){ @@ -371,22 +372,15 @@ int ClusterCommand::execute(){ int ClusterCommand::runVsearchCluster(){ try { - - //Run unique.seqs on the data if a name or count file is not given - map nameMap; - if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } - else if (namefile != "") { nameMap = m->readNames(namefile); } - - if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); nameMap = countTable.getNameMap(); } - + string vsearchFastafile = ""; VsearchFileParser* vParse; + if ((namefile == "") && (countfile == "")) { vParse = new VsearchFileParser(fastafile); } + else if (namefile != "") { vParse = new VsearchFileParser(fastafile, namefile, "name"); } + else if (countfile != "") { vParse = new VsearchFileParser(fastafile, countfile, "count"); } + else { m->mothurOut("[ERROR]: Opps, should never get here. ClusterCommand::runVsearchCluster() \n"); m->control_pressed = true; } + if (m->control_pressed) { return 0; } - //Remove gap characters from each sequence if needed - //Append the number of sequences that each unique sequence represents to the end of the fasta file name - //Sorts by abundance - string vsearchFastafile = createVsearchFasta(fastafile, nameMap); nameMap.clear(); - - if (m->control_pressed) { return 0; } + vsearchFastafile = vParse->getVsearchFile(); delete vParse; if (cutoff > 1.0) { m->mothurOut("You did not set a cutoff, using 0.20.\n"); cutoff = 0.20; } @@ -418,7 +412,7 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri //vsearch --maxaccepts 16 --usersort --id 0.97 --minseqlength 30 --wordlength 8 --uc $ROOT.clustered.uc --cluster_smallmem $ROOT.sorted.fna --maxrejects 64 --strand both --log $ROOT.clustered.log --sizeorder - int numArgs = 11; + int numArgs = 11; if (method == "dgc") { numArgs = 10; } //no sizeorder for dgc char** vsearchParameters; vsearchParameters = new char*[numArgs]; @@ -471,8 +465,10 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); parameterCount++; - //--sizeorder - vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + if (method == "agc") { + //--sizeorder + vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + } errno = 0; vsearch_main(numArgs, vsearchParameters); @@ -488,48 +484,6 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri exit(1); } } - -//********************************************************************************************************************** - -string ClusterCommand::createVsearchFasta(string inputFile, map& nameMap){ - try { - string vsearchFasta = m->getSimpleName(fastafile) + method + ".sorted.fasta"; - - vector seqs; - map::iterator it; - - ifstream in; - m->openInputFile(inputFile, in); - - while (!in.eof()) { - - if (m->control_pressed) { in.close(); return vsearchFasta; } - - Sequence seq(in); m->gobble(in); - - it = nameMap.find(seq.getName()); - if (it == nameMap.end()) { - m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name or countfile, quitting.\n"); m->control_pressed = true; - }else { - seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); - seqs.push_back(temp); - nameMap.erase(it); - } - - } - in.close(); - - m->printVsearchFile(seqs, vsearchFasta); - - return vsearchFasta; - } - catch(exception& e) { - m->errorOut(e, "ClusterCommand", "createVsearchFasta"); - exit(1); - } -} - - //********************************************************************************************************************** int ClusterCommand::runMothurCluster(){ @@ -727,41 +681,6 @@ void ClusterCommand::printData(string label, map& counts){ } //********************************************************************************************************************** -string ClusterCommand::getNamesFile(string& inputFile){ - try { - string nameFile = ""; - - m->mothurOutEndLine(); m->mothurOut("No namesfile given, running unique.seqs command to generate one."); m->mothurOutEndLine(); m->mothurOutEndLine(); - - //use unique.seqs to create new name and fastafile - string inputString = "fasta=" + inputFile + ", format=count"; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); - m->mothurCalling = true; - - Command* uniqueCommand = new DeconvoluteCommand(inputString); - uniqueCommand->execute(); - - map > filenames = uniqueCommand->getOutputFiles(); - - delete uniqueCommand; - m->mothurCalling = false; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - - countfile = filenames["count"][0]; - fastafile = filenames["fasta"][0]; - distfile = fastafile; - - return nameFile; - } - catch(exception& e) { - m->errorOut(e, "ClusterCommand", "getNamesFile"); - exit(1); - } -} - -//********************************************************************************************************************** - int ClusterCommand::createRabund(CountTable*& ct, ListVector*& list, RAbundVector*& rabund){ try { rabund->setLabel(list->getLabel()); diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index 67a8b609..39d261c4 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -69,8 +69,6 @@ class ClusterCommand : public Command { vector outputNames; int createRabund(CountTable*&, ListVector*&, RAbundVector*&); - string getNamesFile(string& inputFile); - string createVsearchFasta(string, map&); int vsearchDriver(string, string, string); int runVsearchCluster(); int runMothurCluster(); diff --git a/source/mothur.h b/source/mothur.h index 71a636b1..ddb58ec3 100644 --- a/source/mothur.h +++ b/source/mothur.h @@ -78,7 +78,6 @@ #include //get cwd #include #include - #include #include #endif diff --git a/source/vsearch_src/vsearchfileparser.cpp b/source/vsearch_src/vsearchfileparser.cpp new file mode 100644 index 00000000..05654eef --- /dev/null +++ b/source/vsearch_src/vsearchfileparser.cpp @@ -0,0 +1,142 @@ +// +// vsearchfileparser.cpp +// Mothur +// +// Created by Sarah Westcott on 10/13/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "vsearchfileparser.h" +#include "deconvolutecommand.h" +#include "sequence.hpp" + +/***********************************************************************/ +VsearchFileParser::VsearchFileParser(string f){ + try { + m = MothurOut::getInstance(); + fastafile = f; + namefile = ""; + countfile = ""; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); + exit(1); + } +} +/***********************************************************************/ +VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string format) { + try { + m = MothurOut::getInstance(); + fastafile = f; + namefile = ""; + countfile = ""; + + if (format == "name") { namefile = nameOrCount; } + else if (format == "count") { countfile = nameOrCount; } + else { m->mothurOut("[ERROR]: " + format + " is not a valid file format for the VsearchFileParser, quitting.\n"); m->control_pressed = true; } + + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); + exit(1); + } +} +/***********************************************************************/ +string VsearchFileParser::getVsearchFile() { + try { + //Run unique.seqs on the data if a name or count file is not given + map nameMap; + if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } + else if (namefile != "") { nameMap = m->readNames(namefile); } + + if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); nameMap = countTable.getNameMap(); } + + if (m->control_pressed) { return 0; } + + //Remove gap characters from each sequence if needed + //Append the number of sequences that each unique sequence represents to the end of the fasta file name + //Sorts by abundance + string vsearchFastafile = createVsearchFasta(fastafile, nameMap); nameMap.clear(); + + return vsearchFastafile; + + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "getVsearchFile"); + exit(1); + } +} +/**********************************************************************/ + +string VsearchFileParser::createVsearchFasta(string inputFile, map& nameMap){ + try { + string vsearchFasta = m->getSimpleName(fastafile) + ".sorted.fasta.temp"; + + vector seqs; + map::iterator it; + + ifstream in; + m->openInputFile(inputFile, in); + + while (!in.eof()) { + + if (m->control_pressed) { in.close(); return vsearchFasta; } + + Sequence seq(in); m->gobble(in); + + it = nameMap.find(seq.getName()); + if (it == nameMap.end()) { + m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name or countfile, quitting.\n"); m->control_pressed = true; + }else { + seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); + seqs.push_back(temp); + nameMap.erase(it); + } + + } + in.close(); + + m->printVsearchFile(seqs, vsearchFasta); + + return vsearchFasta; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "createVsearchFasta"); + exit(1); + } +} +/*************************************************************************/ + +string VsearchFileParser::getNamesFile(string& inputFile){ + try { + string nameFile = ""; + + m->mothurOutEndLine(); m->mothurOut("No namesfile given, running unique.seqs command to generate one."); m->mothurOutEndLine(); m->mothurOutEndLine(); + + //use unique.seqs to create new name and fastafile + string inputString = "fasta=" + inputFile + ", format=count"; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* uniqueCommand = new DeconvoluteCommand(inputString); + uniqueCommand->execute(); + + map > filenames = uniqueCommand->getOutputFiles(); + + delete uniqueCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + countfile = filenames["count"][0]; + fastafile = filenames["fasta"][0]; + + return nameFile; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "getNamesFile"); + exit(1); + } +} +/***********************************************************************/ + diff --git a/source/vsearch_src/vsearchfileparser.h b/source/vsearch_src/vsearchfileparser.h new file mode 100644 index 00000000..6a4a7a80 --- /dev/null +++ b/source/vsearch_src/vsearchfileparser.h @@ -0,0 +1,38 @@ +// +// vsearchfileparser.h +// Mothur +// +// Created by Sarah Westcott on 10/13/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__vsearchfileparser__ +#define __Mothur__vsearchfileparser__ + +#include "mothurout.h" + + +/**************************************************************************************************/ + +class VsearchFileParser { + + public: + VsearchFileParser(string f); + VsearchFileParser(string f, string n, string format); + ~VsearchFileParser(){} + + string getVsearchFile(); + + private: + MothurOut* m; + string fastafile, namefile, countfile; + string getNamesFile(string& inputFile); + string createVsearchFasta(string, map&); + + +}; + +/**************************************************************************************************/ + + +#endif /* defined(__Mothur__vsearchfileparser__) */ From 4be675af7ed2ed4f5ef4d99c1ea88b7dfc764963 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 19 Oct 2015 17:44:23 -0400 Subject: [PATCH 064/135] WIP Issue #169 --- Mothur.xcodeproj/project.pbxproj | 8 +- source/clearcut/cmdargs.cpp | 8 +- source/clearcut/getopt_long.cpp | 15 +- source/commands/clustercommand.cpp | 68 ++++---- source/vsearch_src/vsearch.cc | 320 +++++++++++++++++++------------------ source/vsearch_src/vsearch.h | 10 +- 6 files changed, 229 insertions(+), 200 deletions(-) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index aef82ddc..7738e1a9 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -3672,7 +3672,7 @@ ); PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = macosx; + SDKROOT = macosx10.9; SKIP_INSTALL = NO; }; name = Debug; @@ -3700,7 +3700,7 @@ ONLY_ACTIVE_ARCH = YES; PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = macosx; + SDKROOT = macosx10.9; SKIP_INSTALL = NO; "VALID_ARCHS[sdk=*]" = "i386 x86_64"; }; @@ -3747,7 +3747,7 @@ "-lboost_iostreams", "-lz", ); - SDKROOT = macosx; + SDKROOT = macosx10.9; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = /usr/local/include/; }; @@ -3796,7 +3796,7 @@ "-lboost_iostreams", "-lz", ); - SDKROOT = macosx; + SDKROOT = macosx10.9; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = /usr/local/include/; }; diff --git a/source/clearcut/cmdargs.cpp b/source/clearcut/cmdargs.cpp index 929b4aac..c2283cd4 100644 --- a/source/clearcut/cmdargs.cpp +++ b/source/clearcut/cmdargs.cpp @@ -49,11 +49,11 @@ #include -#ifdef USE_GNU -#include -#else +//#ifdef USE_GNU +//#include +//#else #include "getopt_long.h" -#endif /* USE_GNU*/ +//#endif /* USE_GNU*/ #include "clearcut.h" diff --git a/source/clearcut/getopt_long.cpp b/source/clearcut/getopt_long.cpp index 5a7bde7d..193f9d11 100644 --- a/source/clearcut/getopt_long.cpp +++ b/source/clearcut/getopt_long.cpp @@ -101,15 +101,14 @@ insert_argv(char **argv, int src, int dest) if (src > dest) { for (i = src; i > dest; i--) - argv[i] = argv[i-1]; //printf("%s\n", argv[i]); + argv[i] = argv[i-1]; //printf("%s\n", argv[i]); } if (src < dest) { for (i = src; i < dest; i++) argv[i] = argv[i+1]; //printf("%s\n", argv[i]); } - argv[dest] = tmp; - //printf("%s\n", argv[dest]); + argv[dest] = tmp; //printf("%s\n", argv[dest]); return 0; } @@ -121,15 +120,13 @@ search_longopt(char *arg, struct option *longopts) int len; for (len = 0; arg[len] && arg[len] != '='; len++) ; - + for (i = 0; longopts[i].name; i++) { - //printf("%d\t%s\t", i, longopts[i].name); - //printf("%s\n", arg); + if (strncmp(arg, longopts[i].name, len) == 0) { if (found != -1) return -1; /* found some candidate */ found = i; - //printf("found = %d\n", found); } } return found; @@ -367,7 +364,7 @@ getopt_long(int argc, char **argv, } else if (opt[0] == '-' && opt[1] == '-') { /* long option */ - +printf("in long option %s\n", opt); if (opt[2] == '\0') { /* end of command line switch */ optind++; @@ -377,12 +374,14 @@ getopt_long(int argc, char **argv, opt += 2; i = search_longopt(opt, longopts); + printf("in long option %s, %d\n", opt, i); if (i == -1) { optind++; optopt = 0; return '?'; } else { + int len = strlen(opt); char *p = strchr(opt, '='); if (p) { diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 82b407b8..4a3c3560 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -420,59 +420,73 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri *vsearchParameters[0] = '\0'; strncat(vsearchParameters[0], "vsearch", 7); int parameterCount = 1; - //--maxaccepts 16 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts 16", 15); parameterCount++; + //--maxaccepts=16 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts=16", 15); parameterCount++; + cout << "here" << endl; //--usersort vsearchParameters[parameterCount] = new char[11]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--usersort", 10); parameterCount++; + //--minseqlength=30 + vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength=30", 17); parameterCount++; - cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); - if (cutoffString.length() > 4) { cutoffString = cutoffString.substr(0, 4); } - else if (cutoffString.length() < 4) { for (int i = cutoffString.length(); i < 4; i++) { cutoffString += "0"; } } - cutoffString = "--id " + cutoffString; + //--wordlength=8 + vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength=8", 14); parameterCount++; - //--id 0.97 - vsearchParameters[parameterCount] = new char[10]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), 9); parameterCount++; + //--maxrejects=64 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects=64", 15); parameterCount++; - //--minseqlength 30 - vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength 30", 17); parameterCount++; + //--strand=both + vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand=both", 13); parameterCount++; - //--wordlength 8 - vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength 8", 14); parameterCount++; + if (method == "agc") { + //--sizeorder + vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + } - //--uc $ROOT.clustered.uc - string tempIn = "--uc " + ucClusteredFile; + //--uc=$ROOT.clustered.uc + string tempIn = "--uc=" + ucClusteredFile; vsearchParameters[parameterCount] = new char[tempIn.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); parameterCount++; - //--cluster_smallmem $ROOT.sorted.fna - tempIn = "--cluster_smallmem " + inputFile; + //--log=$ROOT.clustered.log + tempIn = "--log=" + logfile; vsearchParameters[parameterCount] = new char[tempIn.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); parameterCount++; - //--maxrejects 64 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects 64", 15); parameterCount++; + cout << "here" << endl; + + //--id=0.97 + cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); + if (cutoffString.length() > 4) { cutoffString = cutoffString.substr(0, 4); } + else if (cutoffString.length() < 4) { for (int i = cutoffString.length(); i < 4; i++) { cutoffString += "0"; } } + + cutoffString = "--id=" + cutoffString; + vsearchParameters[parameterCount] = new char[cutoffString.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), cutoffString.length()); parameterCount++; + - //--strand both - vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand both", 13); parameterCount++; - //--log $ROOT.clustered.log - tempIn = "--log " + logfile; + //--cluster_smallmem $ROOT.sorted.fna + tempIn = "--cluster_smallmem=" + inputFile; vsearchParameters[parameterCount] = new char[tempIn.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); parameterCount++; - if (method == "agc") { - //--sizeorder - vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; - } + + + + + + + errno = 0; - vsearch_main(numArgs, vsearchParameters); + for(int i = 0; i < numArgs; i++) { cout << vsearchParameters[i]; } cout << endl; + vsearch_main(numArgs, vsearchParameters); + cout << "here" << endl; //free memory for(int i = 0; i < numArgs; i++) { delete[] vsearchParameters[i]; } delete[] vsearchParameters; diff --git a/source/vsearch_src/vsearch.cc b/source/vsearch_src/vsearch.cc index 26bd6d74..12a0a5e8 100644 --- a/source/vsearch_src/vsearch.cc +++ b/source/vsearch_src/vsearch.cc @@ -62,8 +62,11 @@ #include "vsearch.h" + /* options */ +extern int opterr; + bool opt_clusterout_id; bool opt_clusterout_sort; bool opt_eeout; @@ -457,6 +460,7 @@ void args_get_gap_penalty_string(char * arg, int is_open) long args_getlong(char * arg) { + fprintf(stdout, "arg=%s \n", arg); int len = 0; long temp = 0; int ret = sscanf(arg, "%ld%n", &temp, &len); @@ -467,6 +471,7 @@ long args_getlong(char * arg) double args_getdouble(char * arg) { + fprintf(stdout, "arg=%s \n", arg); int len = 0; double temp = 0; int ret = sscanf(arg, "%lf%n", &temp, &len); @@ -475,10 +480,10 @@ double args_getdouble(char * arg) return temp; } -void args_init(int argc, char **argv) +void args_init(int argc, char *argv[]) { /* Set defaults */ - +fprintf(stdout, "args_init begining\n"); progname = argv[0]; opt_abskew = 2.0; @@ -629,152 +634,153 @@ void args_init(int argc, char **argv) opt_xsize = 0; opterr = 1; - - static struct option long_options[] = +fprintf(stdout, "args_init defaults done\n"); + //changed to NULL to use getopt_long.h class - this avoids pulling mothur's + struct option long_options[] = { - {"help", no_argument, 0, 0 }, - {"version", no_argument, 0, 0 }, - {"alnout", required_argument, 0, 0 }, - {"usearch_global", required_argument, 0, 0 }, - {"db", required_argument, 0, 0 }, - {"id", required_argument, 0, 0 }, - {"maxaccepts", required_argument, 0, 0 }, - {"maxrejects", required_argument, 0, 0 }, - {"wordlength", required_argument, 0, 0 }, - {"match", required_argument, 0, 0 }, - {"mismatch", required_argument, 0, 0 }, - {"fulldp", no_argument, 0, 0 }, - {"strand", required_argument, 0, 0 }, - {"threads", required_argument, 0, 0 }, - {"gapopen", required_argument, 0, 0 }, - {"gapext", required_argument, 0, 0 }, - {"rowlen", required_argument, 0, 0 }, - {"userfields", required_argument, 0, 0 }, - {"userout", required_argument, 0, 0 }, - {"self", no_argument, 0, 0 }, - {"blast6out", required_argument, 0, 0 }, - {"uc", required_argument, 0, 0 }, - {"weak_id", required_argument, 0, 0 }, - {"uc_allhits", no_argument, 0, 0 }, - {"notrunclabels", no_argument, 0, 0 }, - {"sortbysize", required_argument, 0, 0 }, - {"output", required_argument, 0, 0 }, - {"minsize", required_argument, 0, 0 }, - {"maxsize", required_argument, 0, 0 }, - {"relabel", required_argument, 0, 0 }, - {"sizeout", no_argument, 0, 0 }, - {"derep_fulllength", required_argument, 0, 0 }, - {"minseqlength", required_argument, 0, 0 }, - {"minuniquesize", required_argument, 0, 0 }, - {"topn", required_argument, 0, 0 }, - {"maxseqlength", required_argument, 0, 0 }, - {"sizein", no_argument, 0, 0 }, - {"sortbylength", required_argument, 0, 0 }, - {"matched", required_argument, 0, 0 }, - {"notmatched", required_argument, 0, 0 }, - {"dbmatched", required_argument, 0, 0 }, - {"dbnotmatched", required_argument, 0, 0 }, - {"fastapairs", required_argument, 0, 0 }, - {"output_no_hits", no_argument, 0, 0 }, - {"maxhits", required_argument, 0, 0 }, - {"top_hits_only", no_argument, 0, 0 }, - {"fasta_width", required_argument, 0, 0 }, - {"query_cov", required_argument, 0, 0 }, - {"target_cov", required_argument, 0, 0 }, - {"idprefix", required_argument, 0, 0 }, - {"idsuffix", required_argument, 0, 0 }, - {"minqt", required_argument, 0, 0 }, - {"maxqt", required_argument, 0, 0 }, - {"minsl", required_argument, 0, 0 }, - {"maxsl", required_argument, 0, 0 }, - {"leftjust", no_argument, 0, 0 }, - {"rightjust", no_argument, 0, 0 }, - {"selfid", no_argument, 0, 0 }, - {"maxid", required_argument, 0, 0 }, - {"minsizeratio", required_argument, 0, 0 }, - {"maxsizeratio", required_argument, 0, 0 }, - {"maxdiffs", required_argument, 0, 0 }, - {"maxsubs", required_argument, 0, 0 }, - {"maxgaps", required_argument, 0, 0 }, - {"mincols", required_argument, 0, 0 }, - {"maxqsize", required_argument, 0, 0 }, - {"mintsize", required_argument, 0, 0 }, - {"mid", required_argument, 0, 0 }, - {"shuffle", required_argument, 0, 0 }, - {"randseed", required_argument, 0, 0 }, - {"maskfasta", required_argument, 0, 0 }, - {"hardmask", no_argument, 0, 0 }, - {"qmask", required_argument, 0, 0 }, - {"dbmask", required_argument, 0, 0 }, - {"cluster_smallmem", required_argument, 0, 0 }, - {"cluster_fast", required_argument, 0, 0 }, - {"centroids", required_argument, 0, 0 }, - {"clusters", required_argument, 0, 0 }, - {"consout", required_argument, 0, 0 }, - {"cons_truncate", no_argument, 0, 0 }, - {"msaout", required_argument, 0, 0 }, - {"usersort", no_argument, 0, 0 }, - {"xn", required_argument, 0, 0 }, - {"iddef", required_argument, 0, 0 }, - {"slots", required_argument, 0, 0 }, - {"pattern", required_argument, 0, 0 }, - {"maxuniquesize", required_argument, 0, 0 }, - {"abskew", required_argument, 0, 0 }, - {"chimeras", required_argument, 0, 0 }, - {"dn", required_argument, 0, 0 }, - {"mindiffs", required_argument, 0, 0 }, - {"mindiv", required_argument, 0, 0 }, - {"minh", required_argument, 0, 0 }, - {"nonchimeras", required_argument, 0, 0 }, - {"uchime_denovo", required_argument, 0, 0 }, - {"uchime_ref", required_argument, 0, 0 }, - {"uchimealns", required_argument, 0, 0 }, - {"uchimeout", required_argument, 0, 0 }, - {"uchimeout5", no_argument, 0, 0 }, - {"alignwidth", required_argument, 0, 0 }, - {"allpairs_global", required_argument, 0, 0 }, - {"acceptall", no_argument, 0, 0 }, - {"cluster_size", required_argument, 0, 0 }, - {"samout", required_argument, 0, 0 }, - {"log", required_argument, 0, 0 }, - {"quiet", no_argument, 0, 0 }, - {"fastx_subsample", required_argument, 0, 0 }, - {"sample_pct", required_argument, 0, 0 }, - {"fastq_chars", required_argument, 0, 0 }, - {"profile", required_argument, 0, 0 }, - {"sample_size", required_argument, 0, 0 }, - {"fastaout", required_argument, 0, 0 }, - {"xsize", no_argument, 0, 0 }, - {"clusterout_id", no_argument, 0, 0 }, - {"clusterout_sort", no_argument, 0, 0 }, - {"borderline", required_argument, 0, 0 }, - {"relabel_sha1", no_argument, 0, 0 }, - {"relabel_md5", no_argument, 0, 0 }, - {"derep_prefix", required_argument, 0, 0 }, - {"fastq_filter", required_argument, 0, 0 }, - {"fastqout", required_argument, 0, 0 }, - {"fastaout_discarded", required_argument, 0, 0 }, - {"fastqout_discarded", required_argument, 0, 0 }, - {"fastq_truncqual", required_argument, 0, 0 }, - {"fastq_maxee", required_argument, 0, 0 }, - {"fastq_trunclen", required_argument, 0, 0 }, - {"fastq_minlen", required_argument, 0, 0 }, - {"fastq_stripleft", required_argument, 0, 0 }, - {"fastq_maxee_rate", required_argument, 0, 0 }, - {"fastq_maxns", required_argument, 0, 0 }, - {"eeout", no_argument, 0, 0 }, - {"fastq_ascii", required_argument, 0, 0 }, - {"fastq_qmin", required_argument, 0, 0 }, - {"fastq_qmax", required_argument, 0, 0 }, - {"fastq_qmaxout", required_argument, 0, 0 }, - {"fastq_stats", required_argument, 0, 0 }, - {"fastq_tail", required_argument, 0, 0 }, - {"fastx_revcomp", required_argument, 0, 0 }, - {"label_suffix", required_argument, 0, 0 }, - {"h", no_argument, 0, 0 }, - {"samheader", no_argument, 0, 0 }, - {"sizeorder", no_argument, 0, 0 }, + {"help", no_argument, NULL, 0 }, + {"version", no_argument, NULL, 0 }, + {"alnout", required_argument, NULL, 0 }, + {"usearch_global", required_argument, NULL, 0 }, + {"db", required_argument, NULL, 0 }, + {"id", required_argument, NULL, 0 }, + {"maxaccepts", required_argument, NULL, 0 }, + {"maxrejects", required_argument, NULL, 0 }, + {"wordlength", required_argument, NULL, 0 }, + {"match", required_argument, NULL, 0 }, + {"mismatch", required_argument, NULL, 0 }, + {"fulldp", no_argument, NULL, 0 }, + {"strand", required_argument, NULL, 0 }, + {"threads", required_argument, NULL, 0 }, + {"gapopen", required_argument, NULL, 0 }, + {"gapext", required_argument, NULL, 0 }, + {"rowlen", required_argument, NULL, 0 }, + {"userfields", required_argument, NULL, 0 }, + {"userout", required_argument, NULL, 0 }, + {"self", no_argument, NULL, 0 }, + {"blast6out", required_argument, NULL, 0 }, + {"uc", required_argument, NULL, 0 }, + {"weak_id", required_argument, NULL, 0 }, + {"uc_allhits", no_argument, NULL, 0 }, + {"notrunclabels", no_argument, NULL, 0 }, + {"sortbysize", required_argument, NULL, 0 }, + {"output", required_argument, NULL, 0 }, + {"minsize", required_argument, NULL, 0 }, + {"maxsize", required_argument, NULL, 0 }, + {"relabel", required_argument, NULL, 0 }, + {"sizeout", no_argument, NULL, 0 }, + {"derep_fulllength", required_argument, NULL, 0 }, + {"minseqlength", required_argument, NULL, 0 }, + {"minuniquesize", required_argument, NULL, 0 }, + {"topn", required_argument, NULL, 0 }, + {"maxseqlength", required_argument, NULL, 0 }, + {"sizein", no_argument, NULL, 0 }, + {"sortbylength", required_argument, NULL, 0 }, + {"matched", required_argument, NULL, 0 }, + {"notmatched", required_argument, NULL, 0 }, + {"dbmatched", required_argument, NULL, 0 }, + {"dbnotmatched", required_argument, NULL, 0 }, + {"fastapairs", required_argument, NULL, 0 }, + {"output_no_hits", no_argument, NULL, 0 }, + {"maxhits", required_argument, NULL, 0 }, + {"top_hits_only", no_argument, NULL, 0 }, + {"fasta_width", required_argument, NULL, 0 }, + {"query_cov", required_argument, NULL, 0 }, + {"target_cov", required_argument, NULL, 0 }, + {"idprefix", required_argument, NULL, 0 }, + {"idsuffix", required_argument, NULL, 0 }, + {"minqt", required_argument, NULL, 0 }, + {"maxqt", required_argument, NULL, 0 }, + {"minsl", required_argument, NULL, 0 }, + {"maxsl", required_argument, NULL, 0 }, + {"leftjust", no_argument, NULL, 0 }, + {"rightjust", no_argument, NULL, 0 }, + {"selfid", no_argument, NULL, 0 }, + {"maxid", required_argument, NULL, 0 }, + {"minsizeratio", required_argument, NULL, 0 }, + {"maxsizeratio", required_argument, NULL, 0 }, + {"maxdiffs", required_argument, NULL, 0 }, + {"maxsubs", required_argument, NULL, 0 }, + {"maxgaps", required_argument, NULL, 0 }, + {"mincols", required_argument, NULL, 0 }, + {"maxqsize", required_argument, NULL, 0 }, + {"mintsize", required_argument, NULL, 0 }, + {"mid", required_argument, NULL, 0 }, + {"shuffle", required_argument, NULL, 0 }, + {"randseed", required_argument, NULL, 0 }, + {"maskfasta", required_argument, NULL, 0 }, + {"hardmask", no_argument, NULL, 0 }, + {"qmask", required_argument, NULL, 0 }, + {"dbmask", required_argument, NULL, 0 }, + {"cluster_smallmem", required_argument, NULL, 0 }, + {"cluster_fast", required_argument, NULL, 0 }, + {"centroids", required_argument, NULL, 0 }, + {"clusters", required_argument, NULL, 0 }, + {"consout", required_argument, NULL, 0 }, + {"cons_truncate", no_argument, NULL, 0 }, + {"msaout", required_argument, NULL, 0 }, + {"usersort", no_argument, NULL, 0 }, + {"xn", required_argument, NULL, 0 }, + {"iddef", required_argument, NULL, 0 }, + {"slots", required_argument, NULL, 0 }, + {"pattern", required_argument, NULL, 0 }, + {"maxuniquesize", required_argument, NULL, 0 }, + {"abskew", required_argument, NULL, 0 }, + {"chimeras", required_argument, NULL, 0 }, + {"dn", required_argument, NULL, 0 }, + {"mindiffs", required_argument, NULL, 0 }, + {"mindiv", required_argument, NULL, 0 }, + {"minh", required_argument, NULL, 0 }, + {"nonchimeras", required_argument, NULL, 0 }, + {"uchime_denovo", required_argument, NULL, 0 }, + {"uchime_ref", required_argument, NULL, 0 }, + {"uchimealns", required_argument, NULL, 0 }, + {"uchimeout", required_argument, NULL, 0 }, + {"uchimeout5", no_argument, NULL, 0 }, + {"alignwidth", required_argument, NULL, 0 }, + {"allpairs_global", required_argument, NULL, 0 }, + {"acceptall", no_argument, NULL, 0 }, + {"cluster_size", required_argument, NULL, 0 }, + {"samout", required_argument, NULL, 0 }, + {"log", required_argument, NULL, 0 }, + {"quiet", no_argument, NULL, 0 }, + {"fastx_subsample", required_argument, NULL, 0 }, + {"sample_pct", required_argument, NULL, 0 }, + {"fastq_chars", required_argument, NULL, 0 }, + {"profile", required_argument, NULL, 0 }, + {"sample_size", required_argument, NULL, 0 }, + {"fastaout", required_argument, NULL, 0 }, + {"xsize", no_argument, NULL, 0 }, + {"clusterout_id", no_argument, NULL, 0 }, + {"clusterout_sort", no_argument, NULL, 0 }, + {"borderline", required_argument, NULL, 0 }, + {"relabel_sha1", no_argument, NULL, 0 }, + {"relabel_md5", no_argument, NULL, 0 }, + {"derep_prefix", required_argument, NULL, 0 }, + {"fastq_filter", required_argument, NULL, 0 }, + {"fastqout", required_argument, NULL, 0 }, + {"fastaout_discarded", required_argument, NULL, 0 }, + {"fastqout_discarded", required_argument, NULL, 0 }, + {"fastq_truncqual", required_argument, NULL, 0 }, + {"fastq_maxee", required_argument, NULL, 0 }, + {"fastq_trunclen", required_argument, NULL, 0 }, + {"fastq_minlen", required_argument, NULL, 0 }, + {"fastq_stripleft", required_argument, NULL, 0 }, + {"fastq_maxee_rate", required_argument, NULL, 0 }, + {"fastq_maxns", required_argument, NULL, 0 }, + {"eeout", no_argument, NULL, 0 }, + {"fastq_ascii", required_argument, NULL, 0 }, + {"fastq_qmin", required_argument, NULL, 0 }, + {"fastq_qmax", required_argument, NULL, 0 }, + {"fastq_qmaxout", required_argument, NULL, 0 }, + {"fastq_stats", required_argument, NULL, 0 }, + {"fastq_tail", required_argument, NULL, 0 }, + {"fastx_revcomp", required_argument, NULL, 0 }, + {"label_suffix", required_argument, NULL, 0 }, + {"h", no_argument, NULL, 0 }, + {"samheader", no_argument, NULL, 0 }, + {"sizeorder", no_argument, NULL, 0 }, { 0, 0, 0, 0 } }; @@ -785,11 +791,12 @@ void args_init(int argc, char **argv) int option_index = 0; int c; - - while ((c = getopt_long_only(argc, argv, "", long_options, + + while ((c = getopt_long(argc, argv, "", long_options, &option_index)) == 0) { - if (option_index < option_count) + fprintf(stdout, "option=%d\n", option_index); + if (option_index < option_count) options_selected[option_index] = 1; switch(option_index) @@ -1971,7 +1978,7 @@ void fillheader() sysconf(_SC_NPROCESSORS_ONLN)); } -void getentirecommandline(int argc, char** argv) +void getentirecommandline(int argc, char *argv[]) { int len = 0; for (int i=0; i #include #include -#include +//#include #include #include #include @@ -75,6 +76,7 @@ #include +#include "getopt_long.h" #include "cityhash/city.h" #include "md5.h" #include "sha1.h" @@ -324,3 +326,7 @@ extern FILE * fp_log; /* main function prototype */ int vsearch_main(int, char**); +#endif + + + From 4174b4fd672ec3d553f2b535bff482f3a4718aff Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 3 Nov 2015 09:38:26 -0500 Subject: [PATCH 065/135] Adds agc and dgc methods to cluster command Issue #169 --- source/clearcut/getopt_long.cpp | 11 +-- source/commands/clustercommand.cpp | 97 ++++++++++++----------- source/vsearch_src/vsearch.cc | 14 +--- source/vsearch_src/vsearchfileparser.cpp | 129 ++++++++++++++++++++++++++++--- source/vsearch_src/vsearchfileparser.h | 16 ++-- 5 files changed, 192 insertions(+), 75 deletions(-) diff --git a/source/clearcut/getopt_long.cpp b/source/clearcut/getopt_long.cpp index 193f9d11..48ae0b01 100644 --- a/source/clearcut/getopt_long.cpp +++ b/source/clearcut/getopt_long.cpp @@ -113,6 +113,8 @@ insert_argv(char **argv, int src, int dest) return 0; } + + static int search_longopt(char *arg, struct option *longopts) { @@ -123,10 +125,9 @@ search_longopt(char *arg, struct option *longopts) for (i = 0; longopts[i].name; i++) { - if (strncmp(arg, longopts[i].name, len) == 0) { - if (found != -1) - return -1; /* found some candidate */ + if (strncmp(arg, longopts[i].name, len)==0) { found = i; + break; } } return found; @@ -364,7 +365,7 @@ getopt_long(int argc, char **argv, } else if (opt[0] == '-' && opt[1] == '-') { /* long option */ -printf("in long option %s\n", opt); + if (opt[2] == '\0') { /* end of command line switch */ optind++; @@ -374,7 +375,7 @@ printf("in long option %s\n", opt); opt += 2; i = search_longopt(opt, longopts); - printf("in long option %s, %d\n", opt, i); + if (i == -1) { optind++; optopt = 0; diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 4a3c3560..e0f57251 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -380,22 +380,41 @@ int ClusterCommand::runVsearchCluster(){ if (m->control_pressed) { return 0; } - vsearchFastafile = vParse->getVsearchFile(); delete vParse; + vsearchFastafile = vParse->getVsearchFile(); - if (cutoff > 1.0) { m->mothurOut("You did not set a cutoff, using 0.20.\n"); cutoff = 0.20; } + if (cutoff > 1.0) { m->mothurOut("You did not set a cutoff, using 0.03.\n"); cutoff = 0.03; } //Run vsearch string ucVsearchFile = m->getSimpleName(vsearchFastafile) + ".clustered.uc"; string logfile = m->getSimpleName(vsearchFastafile) + ".clustered.log"; vsearchDriver(vsearchFastafile, ucVsearchFile, logfile); - if (m->control_pressed) { - ////////////////////////remove files///////////////////// - return 0; + if (m->control_pressed) { m->mothurRemove(ucVsearchFile); m->mothurRemove(logfile); m->mothurRemove(vsearchFastafile); return 0; } + + if (outputDir == "") { outputDir += m->hasPath(distfile); } + fileroot = outputDir + m->getRootName(m->getSimpleName(distfile)); + tag = method; + + map variables; + variables["[filename]"] = fileroot; + variables["[clustertag]"] = tag; + string sabundFileName = getOutputFileName("sabund", variables); + string rabundFileName = getOutputFileName("rabund", variables); + if (countfile != "") { variables["[tag2]"] = "unique_list"; } + string listFileName = getOutputFileName("list", variables); + outputNames.push_back(listFileName); outputTypes["list"].push_back(listFileName); + if (countfile == "") { + outputNames.push_back(sabundFileName); outputTypes["sabund"].push_back(sabundFileName); + outputNames.push_back(rabundFileName); outputTypes["rabund"].push_back(rabundFileName); } //Convert outputted *.uc file into a list file + vParse->createListFile(ucVsearchFile, listFileName, sabundFileName, rabundFileName, vParse->getNumBins(logfile), toString(1.0-cutoff)); delete vParse; + + //remove temp files + m->mothurRemove(ucVsearchFile); m->mothurRemove(logfile); m->mothurRemove(vsearchFastafile); + if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } return 0; } @@ -422,42 +441,10 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri int parameterCount = 1; //--maxaccepts=16 vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts=16", 15); parameterCount++; - cout << "here" << endl; //--usersort vsearchParameters[parameterCount] = new char[11]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--usersort", 10); parameterCount++; - //--minseqlength=30 - vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength=30", 17); parameterCount++; - - //--wordlength=8 - vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength=8", 14); parameterCount++; - - //--maxrejects=64 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects=64", 15); parameterCount++; - - //--strand=both - vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand=both", 13); parameterCount++; - - if (method == "agc") { - //--sizeorder - vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; - } - - //--uc=$ROOT.clustered.uc - string tempIn = "--uc=" + ucClusteredFile; - vsearchParameters[parameterCount] = new char[tempIn.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); - parameterCount++; - - //--log=$ROOT.clustered.log - tempIn = "--log=" + logfile; - vsearchParameters[parameterCount] = new char[tempIn.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); - parameterCount++; - - cout << "here" << endl; - //--id=0.97 cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); if (cutoffString.length() > 4) { cutoffString = cutoffString.substr(0, 4); } @@ -466,27 +453,47 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri cutoffString = "--id=" + cutoffString; vsearchParameters[parameterCount] = new char[cutoffString.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), cutoffString.length()); parameterCount++; + //--minseqlength=30 + vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength=30", 17); parameterCount++; + //--wordlength=8 + vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength=8", 14); parameterCount++; - //--cluster_smallmem $ROOT.sorted.fna - tempIn = "--cluster_smallmem=" + inputFile; + //--uc=$ROOT.clustered.uc + string tempIn = "--uc=" + ucClusteredFile; vsearchParameters[parameterCount] = new char[tempIn.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); parameterCount++; - - - + //--cluster_smallmem $ROOT.sorted.fna + string tempSorted = "--cluster_smallmem=" + inputFile; + vsearchParameters[parameterCount] = new char[tempSorted.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempSorted.c_str(), tempSorted.length()); + parameterCount++; + //--maxrejects=64 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects=64", 15); parameterCount++; + //--strand=both + vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand=both", 13); parameterCount++; + //--log=$ROOT.clustered.log + string tempLog = "--log=" + logfile; + vsearchParameters[parameterCount] = new char[tempLog.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempLog.c_str(), tempLog.length()); + parameterCount++; + + if (method == "agc") { + //--sizeorder + vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + } + + if (m->debug) { for(int i = 0; i < numArgs; i++) { cout << vsearchParameters[i]; } cout << endl; } errno = 0; - for(int i = 0; i < numArgs; i++) { cout << vsearchParameters[i]; } cout << endl; - vsearch_main(numArgs, vsearchParameters); - cout << "here" << endl; + //free memory for(int i = 0; i < numArgs; i++) { delete[] vsearchParameters[i]; } delete[] vsearchParameters; diff --git a/source/vsearch_src/vsearch.cc b/source/vsearch_src/vsearch.cc index 12a0a5e8..9ee05f72 100644 --- a/source/vsearch_src/vsearch.cc +++ b/source/vsearch_src/vsearch.cc @@ -460,7 +460,6 @@ void args_get_gap_penalty_string(char * arg, int is_open) long args_getlong(char * arg) { - fprintf(stdout, "arg=%s \n", arg); int len = 0; long temp = 0; int ret = sscanf(arg, "%ld%n", &temp, &len); @@ -471,7 +470,6 @@ long args_getlong(char * arg) double args_getdouble(char * arg) { - fprintf(stdout, "arg=%s \n", arg); int len = 0; double temp = 0; int ret = sscanf(arg, "%lf%n", &temp, &len); @@ -483,7 +481,6 @@ double args_getdouble(char * arg) void args_init(int argc, char *argv[]) { /* Set defaults */ -fprintf(stdout, "args_init begining\n"); progname = argv[0]; opt_abskew = 2.0; @@ -634,7 +631,7 @@ fprintf(stdout, "args_init begining\n"); opt_xsize = 0; opterr = 1; -fprintf(stdout, "args_init defaults done\n"); + //changed to NULL to use getopt_long.h class - this avoids pulling mothur's struct option long_options[] = @@ -795,16 +792,16 @@ fprintf(stdout, "args_init defaults done\n"); while ((c = getopt_long(argc, argv, "", long_options, &option_index)) == 0) { - fprintf(stdout, "option=%d\n", option_index); + if (option_index < option_count) options_selected[option_index] = 1; switch(option_index) { + case 0: opt_help = 1; break; - case 1: opt_version = 1; break; @@ -2007,15 +2004,10 @@ void show_header() int vsearch_main(int argc, char *argv[]) { opterr = 0; - fprintf(stdout, "in vsearch_main\n"); fillheader(); - fprintf(stdout, "fillheader\n"); getentirecommandline(argc, argv); -fprintf(stdout, "getentirecommandline\n"); cpu_features_detect(); -fprintf(stdout, "cpu_features_detect\n"); args_init(argc, argv); -fprintf(stdout, "args_init\n"); if (opt_log) { fp_log = fopen(opt_log, "w"); diff --git a/source/vsearch_src/vsearchfileparser.cpp b/source/vsearch_src/vsearchfileparser.cpp index 05654eef..e52a3443 100644 --- a/source/vsearch_src/vsearchfileparser.cpp +++ b/source/vsearch_src/vsearchfileparser.cpp @@ -9,6 +9,8 @@ #include "vsearchfileparser.h" #include "deconvolutecommand.h" #include "sequence.hpp" +#include "rabundvector.hpp" +#include "sabundvector.hpp" /***********************************************************************/ VsearchFileParser::VsearchFileParser(string f){ @@ -17,6 +19,7 @@ VsearchFileParser::VsearchFileParser(string f){ fastafile = f; namefile = ""; countfile = ""; + format = "count"; } catch(exception& e) { m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); @@ -24,12 +27,13 @@ VsearchFileParser::VsearchFileParser(string f){ } } /***********************************************************************/ -VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string format) { +VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string forma) { try { m = MothurOut::getInstance(); fastafile = f; namefile = ""; countfile = ""; + format = forma; if (format == "name") { namefile = nameOrCount; } else if (format == "count") { countfile = nameOrCount; } @@ -45,18 +49,17 @@ VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string format string VsearchFileParser::getVsearchFile() { try { //Run unique.seqs on the data if a name or count file is not given - map nameMap; if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } - else if (namefile != "") { nameMap = m->readNames(namefile); } + else if (namefile != "") { counts = m->readNames(namefile); } - if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); nameMap = countTable.getNameMap(); } + if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); counts = countTable.getNameMap(); } if (m->control_pressed) { return 0; } //Remove gap characters from each sequence if needed //Append the number of sequences that each unique sequence represents to the end of the fasta file name //Sorts by abundance - string vsearchFastafile = createVsearchFasta(fastafile, nameMap); nameMap.clear(); + string vsearchFastafile = createVsearchFasta(fastafile); return vsearchFastafile; @@ -68,7 +71,7 @@ string VsearchFileParser::getVsearchFile() { } /**********************************************************************/ -string VsearchFileParser::createVsearchFasta(string inputFile, map& nameMap){ +string VsearchFileParser::createVsearchFasta(string inputFile){ try { string vsearchFasta = m->getSimpleName(fastafile) + ".sorted.fasta.temp"; @@ -84,13 +87,12 @@ string VsearchFileParser::createVsearchFasta(string inputFile, map& Sequence seq(in); m->gobble(in); - it = nameMap.find(seq.getName()); - if (it == nameMap.end()) { + it = counts.find(seq.getName()); + if (it == counts.end()) { m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name or countfile, quitting.\n"); m->control_pressed = true; }else { seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); seqs.push_back(temp); - nameMap.erase(it); } } @@ -138,5 +140,114 @@ string VsearchFileParser::getNamesFile(string& inputFile){ exit(1); } } +/*************************************************************************/ +//S 1 275 * * * * * GQY1XT001C44N8/ab=3677/ * +int VsearchFileParser::createListFile(string inputFile, string listFile, string sabundFile, string rabundFile, int numBins, string label){ + try { + map::iterator itName; + if (format == "name") { counts.clear(); m->readNames(namefile, nameMap); } + + ifstream in; + m->openInputFile(inputFile, in); + + ListVector list(numBins); list.setLabel(label); + + int clusterNumber; + string seqName, recordType, length, percentIdentity, strand, notUsed1, notUsed2, compressedAlignment, repSequence; + + while(!in.eof()) { + if (m->control_pressed) { break; } + + in >> recordType >> clusterNumber >> length >> percentIdentity >> strand >> notUsed1 >> notUsed2 >> compressedAlignment >> seqName >> repSequence; m->gobble(in); + + seqName = removeAbundances(seqName); + + if (format == "name") { + itName = nameMap.find(seqName); + if (itName == nameMap.end()) { m->mothurOut("[ERROR]: " + seqName + " is not in your name file. Parsing error???\n"); m->control_pressed = true; } + else{ seqName = itName->second; } + } + + string bin = list.get(clusterNumber); + if (bin == "") { bin = seqName; } + else { bin += ',' + seqName; } + list.set(clusterNumber, bin); + + } + in.close(); + + ofstream out; + m->openOutputFile(listFile, out); + list.printHeaders(out); + + if (countfile != "") { + list.print(out, counts); + }else { + list.print(out); + + //print sabund and rabund + ofstream sabund, rabund; + m->openOutputFile(sabundFile, sabund); + m->openOutputFile(rabundFile, rabund); + + list.getRAbundVector().print(rabund); rabund.close(); + list.getSAbundVector().print(sabund); sabund.close(); + } + out.close(); + + return 0; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "createListFile"); + exit(1); + } +} +/*************************************************************************/ +//GQY1XT001C44N8/ab=3677/ * +string VsearchFileParser::removeAbundances(string seqName){ + try { + + int pos = seqName.find_last_of("/", seqName.length()-2); //don't look at the last / + if (pos != string::npos) { seqName = seqName.substr(0, pos); } + + return seqName; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "removeAbundances"); + exit(1); + } +} +/*************************************************************************/ +//GQY1XT001C44N8/ab=3677/ * +int VsearchFileParser::getNumBins(string logfile){ + try { + + int numBins = 0; + + ifstream in; + m->openInputFile(logfile, in); + + string line; + while(!in.eof()) { + if (m->control_pressed) { break; } + + line = m->getline(in); m->gobble(in); + + int pos = line.find("Clusters:"); + if (pos != string::npos) { + vector pieces = m->splitWhiteSpace(line); + if (pieces.size() > 1) { m->mothurConvert(pieces[1], numBins); } + break; + } + } + in.close(); + + return numBins; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "getNumBins"); + exit(1); + } +} /***********************************************************************/ diff --git a/source/vsearch_src/vsearchfileparser.h b/source/vsearch_src/vsearchfileparser.h index 6a4a7a80..551ee454 100644 --- a/source/vsearch_src/vsearchfileparser.h +++ b/source/vsearch_src/vsearchfileparser.h @@ -17,17 +17,23 @@ class VsearchFileParser { public: - VsearchFileParser(string f); - VsearchFileParser(string f, string n, string format); + VsearchFileParser(string f); //fastafile + VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") ~VsearchFileParser(){} - string getVsearchFile(); + string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. + string getCountFile(); //returns count filename. If no names or count file is given, then a count file is generated. + int createListFile(string uc, string listfile, string, string, int numbins, string label); //takes vsearch output and creates list file + int getNumBins(string logfile); private: MothurOut* m; - string fastafile, namefile, countfile; + map nameMap; + map counts; + string fastafile, namefile, countfile, format; string getNamesFile(string& inputFile); - string createVsearchFasta(string, map&); + string createVsearchFasta(string); + string removeAbundances(string seqName); }; From 0f33eda0a1072ad6a41a8a064d6fe1a3af5f0131 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 5 Nov 2015 10:00:32 -0500 Subject: [PATCH 066/135] Adds vsearch to cluster.split Issue #169 --- Mothur.xcodeproj/project.pbxproj | 16 -- makefile-internal | 4 +- source/commandfactory.cpp | 27 +- source/commands/clustercommand.cpp | 1 - source/commands/clustersplitcommand.cpp | 405 +++++++++++++++++++---------- source/commands/clustersplitcommand.h | 2 + source/commands/getotulabelscommand.cpp | 8 +- source/commands/getotulabelscommand.h | 4 +- source/commands/removeotulabelscommand.cpp | 8 +- source/commands/removeotulabelscommand.h | 4 +- source/read/splitmatrix.cpp | 68 ++--- source/read/splitmatrix.h | 4 +- source/vsearch_src/abundance.h | 4 + source/vsearch_src/arch.cc | 16 +- source/vsearch_src/vsearch.cc | 2 +- source/vsearch_src/vsearch.h | 2 + source/vsearch_src/vsearchfileparser.cpp | 14 +- 17 files changed, 367 insertions(+), 222 deletions(-) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 7738e1a9..1064f0d5 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -165,7 +165,6 @@ 481FB5C01AC1B74F0076CFF3 /* getlineagecommand.cpp in Sources */ = {isa = PBXBuildFile; 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fileRef = A7B0231416B8244B006BA09E /* removedistscommand.cpp */; }; 481FB5FA1AC1B77E0076CFF3 /* removegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */; }; 481FB5FB1AC1B77E0076CFF3 /* removelineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */; }; - 481FB5FC1AC1B7970076CFF3 /* removeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */; }; 481FB5FD1AC1B7970076CFF3 /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; }; 481FB5FE1AC1B7970076CFF3 /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; }; 481FB5FF1AC1B7970076CFF3 /* removeseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */; }; @@ -627,7 +625,6 @@ A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */; }; A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */; }; A7E9B8D312D37EC400DA6239 /* getoturepcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */; }; - A7E9B8D412D37EC400DA6239 /* getotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */; }; A7E9B8D512D37EC400DA6239 /* getrabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */; }; A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */; }; A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */; }; @@ -716,7 +713,6 @@ A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7BF12D37EC400DA6239 /* readtree.cpp */; }; A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */; }; A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */; }; - A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */; }; A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */; }; A7E9B93612D37EC400DA6239 /* reportfile.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */; }; A7E9B93712D37EC400DA6239 /* reversecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */; }; @@ -1322,8 +1318,6 @@ A7E9B6FD12D37EC400DA6239 /* getopt_long.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getopt_long.h; path = source/clearcut/getopt_long.h; sourceTree = ""; }; A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getoturepcommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getoturepcommand.cpp; sourceTree = ""; }; A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getoturepcommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getoturepcommand.h; sourceTree = ""; }; - A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getotuscommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getotuscommand.cpp; sourceTree = ""; }; - A7E9B70112D37EC400DA6239 /* getotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getotuscommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getotuscommand.h; sourceTree = ""; }; A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; name = getrabundcommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getrabundcommand.cpp; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.cpp; }; A7E9B70312D37EC400DA6239 /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getrabundcommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getrabundcommand.h; sourceTree = ""; }; A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getrelabundcommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/getrelabundcommand.cpp; sourceTree = ""; }; @@ -1507,8 +1501,6 @@ A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removegroupscommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removegroupscommand.h; sourceTree = ""; }; A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removelineagecommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removelineagecommand.cpp; sourceTree = ""; }; A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removelineagecommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removelineagecommand.h; sourceTree = ""; }; - A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removeotuscommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removeotuscommand.cpp; sourceTree = ""; }; - A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removeotuscommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removeotuscommand.h; sourceTree = ""; }; A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removeseqscommand.cpp; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removeseqscommand.cpp; sourceTree = ""; }; A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removeseqscommand.h; path = /Users/sarahwestcott/Desktop/mothur/source/commands/removeseqscommand.h; sourceTree = ""; }; A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = reportfile.cpp; path = source/datastructures/reportfile.cpp; sourceTree = ""; }; @@ -2163,8 +2155,6 @@ A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */, A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */, A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */, - A7E9B70112D37EC400DA6239 /* getotuscommand.h */, - A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */, A70056E8156A93E300924A2D /* getotulabelscommand.h */, A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B70312D37EC400DA6239 /* getrabundcommand.h */, @@ -2279,8 +2269,6 @@ A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */, A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */, A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */, - A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */, - A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */, A70056E9156AB6D400924A2D /* removeotulabelscommand.h */, A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */, A727864212E9E28C00F86ABA /* removerarecommand.h */, @@ -2872,7 +2860,6 @@ 481FB58C1AC1B6FF0076CFF3 /* slayer.cpp in Sources */, 481FB6531AC1B8100076CFF3 /* gotohoverlap.cpp in Sources */, 481FB66D1AC1B8520076CFF3 /* rftreenode.cpp in Sources */, - 481FB5C31AC1B74F0076CFF3 /* getotuscommand.cpp in Sources */, 481FB65B1AC1B82C0076CFF3 /* mothurfisher.cpp in Sources */, 481FB6721AC1B8820076CFF3 /* refchimeratest.cpp in Sources */, 481FB6051AC1B7970076CFF3 /* seqerrorcommand.cpp in Sources */, @@ -3178,7 +3165,6 @@ 481FB5A21AC1B71B0076CFF3 /* clearcutcommand.cpp in Sources */, 481FB5851AC1B6FF0076CFF3 /* chimeracheckrdp.cpp in Sources */, 481FB55C1AC1B6660076CFF3 /* sharedbraycurtis.cpp in Sources */, - 481FB5FC1AC1B7970076CFF3 /* removeotuscommand.cpp in Sources */, 481FB5BE1AC1B74F0076CFF3 /* getmetacommunitycommand.cpp in Sources */, 481FB6821AC1B8AF0076CFF3 /* svm.cpp in Sources */, 481FB6911AC1BAA60076CFF3 /* phylotree.cpp in Sources */, @@ -3325,7 +3311,6 @@ A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */, A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */, A7E9B8D312D37EC400DA6239 /* getoturepcommand.cpp in Sources */, - A7E9B8D412D37EC400DA6239 /* getotuscommand.cpp in Sources */, A7E9B8D512D37EC400DA6239 /* getrabundcommand.cpp in Sources */, A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */, A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */, @@ -3429,7 +3414,6 @@ A7E9B93012D37EC400DA6239 /* readtree.cpp in Sources */, A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */, A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */, - A7E9B93412D37EC400DA6239 /* removeotuscommand.cpp in Sources */, A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */, 48A52FDE1BC428DF00548F6C /* util.cc in Sources */, A7E9B93612D37EC400DA6239 /* reportfile.cpp in Sources */, diff --git a/makefile-internal b/makefile-internal index 2adaef37..5a5b974c 100644 --- a/makefile-internal +++ b/makefile-internal @@ -10,7 +10,7 @@ VERSION = "\"1.36.1\"" ifeq ($(strip $(64BIT_VERSION)),yes) #if you are a mac user use the following line - TARGET_ARCH += -arch x86_64 + #TARGET_ARCH += -arch x86_64 #if you using cygwin to build Windows the following line #CXX = x86_64-w64-mingw32-g++ @@ -95,4 +95,4 @@ install : mothur clean : @rm -f $(OBJECTS) - @rm -f uchime \ No newline at end of file + @rm -f uchime diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index af91caf5..76874a4f 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -93,8 +93,6 @@ #include "subsamplecommand.h" #include "removegroupscommand.h" #include "getgroupscommand.h" -#include "getotuscommand.h" -#include "removeotuscommand.h" #include "indicatorcommand.h" #include "consensusseqscommand.h" #include "trimflowscommand.h" @@ -303,6 +301,7 @@ CommandFactory::CommandFactory(){ commands["create.database"] = "create.database"; commands["make.biom"] = "make.biom"; commands["get.coremicrobiome"] = "get.coremicrobiome"; + commands["list.otus"] = "list.otus"; commands["list.otulabels"] = "list.otulabels"; commands["get.otulabels"] = "get.otulabels"; commands["remove.otulabels"] = "remove.otulabels"; @@ -518,8 +517,9 @@ Command* CommandFactory::getCommand(string commandName, string optionString){ else if(commandName == "remove.lineage") { command = new RemoveLineageCommand(optionString); } else if(commandName == "get.groups") { command = new GetGroupsCommand(optionString); } else if(commandName == "remove.groups") { command = new RemoveGroupsCommand(optionString); } - else if(commandName == "get.otus") { command = new GetOtusCommand(optionString); } - else if(commandName == "remove.otus") { command = new RemoveOtusCommand(optionString); } + else if((commandName == "get.otus") || (commandName == "get.otulabels")) { command = new GetOtuLabelsCommand(optionString); } + else if((commandName == "remove.otus") || (commandName == "remove.otulabels")) { command = new RemoveOtuLabelsCommand(optionString); } + else if((commandName == "list.otus") ||(commandName == "list.otulabels")) { command = new ListOtuLabelsCommand(optionString); } else if(commandName == "fastq.info") { command = new ParseFastaQCommand(optionString); } else if(commandName == "pipeline.pds") { command = new PipelineCommand(optionString); } else if(commandName == "deunique.seqs") { command = new DeUniqueSeqsCommand(optionString); } @@ -556,9 +556,6 @@ Command* CommandFactory::getCommand(string commandName, string optionString){ else if(commandName == "create.database") { command = new CreateDatabaseCommand(optionString); } else if(commandName == "make.biom") { command = new MakeBiomCommand(optionString); } else if(commandName == "get.coremicrobiome") { command = new GetCoreMicroBiomeCommand(optionString); } - else if(commandName == "list.otulabels") { command = new ListOtuLabelsCommand(optionString); } - else if(commandName == "get.otulabels") { command = new GetOtuLabelsCommand(optionString); } - else if(commandName == "remove.otulabels") { command = new RemoveOtuLabelsCommand(optionString); } else if(commandName == "make.contigs") { command = new MakeContigsCommand(optionString); } else if(commandName == "load.logfile") { command = new LoadLogfileCommand(optionString); } else if(commandName == "sff.multiple") { command = new SffMultipleCommand(optionString); } @@ -695,8 +692,9 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str else if(commandName == "get.groups") { pipecommand = new GetGroupsCommand(optionString); } else if(commandName == "remove.lineage") { pipecommand = new RemoveLineageCommand(optionString); } else if(commandName == "remove.groups") { pipecommand = new RemoveGroupsCommand(optionString); } - else if(commandName == "get.otus") { pipecommand = new GetOtusCommand(optionString); } - else if(commandName == "remove.otus") { pipecommand = new RemoveOtusCommand(optionString); } + else if((commandName == "get.otus") || (commandName == "get.otulabels")) { pipecommand = new GetOtuLabelsCommand(optionString); } + else if((commandName == "remove.otus") || (commandName == "remove.otulabels")) { pipecommand = new RemoveOtuLabelsCommand(optionString); } + else if((commandName == "list.otus") ||(commandName == "list.otulabels")) { pipecommand = new ListOtuLabelsCommand(optionString); } else if(commandName == "fastq.info") { pipecommand = new ParseFastaQCommand(optionString); } else if(commandName == "deunique.seqs") { pipecommand = new DeUniqueSeqsCommand(optionString); } else if(commandName == "pairwise.seqs") { pipecommand = new PairwiseSeqsCommand(optionString); } @@ -732,9 +730,6 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str else if(commandName == "create.database") { pipecommand = new CreateDatabaseCommand(optionString); } else if(commandName == "make.biom") { pipecommand = new MakeBiomCommand(optionString); } else if(commandName == "get.coremicrobiome") { pipecommand = new GetCoreMicroBiomeCommand(optionString); } - else if(commandName == "list.otulabels") { pipecommand = new ListOtuLabelsCommand(optionString); } - else if(commandName == "get.otulabels") { pipecommand = new GetOtuLabelsCommand(optionString); } - else if(commandName == "remove.otulabels") { pipecommand = new RemoveOtuLabelsCommand(optionString); } else if(commandName == "make.contigs") { pipecommand = new MakeContigsCommand(optionString); } else if(commandName == "load.logfile") { pipecommand = new LoadLogfileCommand(optionString); } else if(commandName == "sff.multiple") { pipecommand = new SffMultipleCommand(optionString); } @@ -857,8 +852,9 @@ Command* CommandFactory::getCommand(string commandName){ else if(commandName == "remove.lineage") { shellcommand = new RemoveLineageCommand(); } else if(commandName == "get.groups") { shellcommand = new GetGroupsCommand(); } else if(commandName == "remove.groups") { shellcommand = new RemoveGroupsCommand(); } - else if(commandName == "get.otus") { shellcommand = new GetOtusCommand(); } - else if(commandName == "remove.otus") { shellcommand = new RemoveOtusCommand(); } + else if((commandName == "get.otus") || (commandName == "get.otulabels")) { shellcommand = new GetOtuLabelsCommand(); } + else if((commandName == "remove.otus") || (commandName == "remove.otulabels")) { shellcommand = new RemoveOtuLabelsCommand(); } + else if((commandName == "list.otus") ||(commandName == "list.otulabels")) { shellcommand = new ListOtuLabelsCommand(); } else if(commandName == "fastq.info") { shellcommand = new ParseFastaQCommand(); } else if(commandName == "deunique.seqs") { shellcommand = new DeUniqueSeqsCommand(); } else if(commandName == "pairwise.seqs") { shellcommand = new PairwiseSeqsCommand(); } @@ -894,9 +890,6 @@ Command* CommandFactory::getCommand(string commandName){ else if(commandName == "create.database") { shellcommand = new CreateDatabaseCommand(); } else if(commandName == "make.biom") { shellcommand = new MakeBiomCommand(); } else if(commandName == "get.coremicrobiome") { shellcommand = new GetCoreMicroBiomeCommand(); } - else if(commandName == "list.otulabels") { shellcommand = new ListOtuLabelsCommand(); } - else if(commandName == "get.otulabels") { shellcommand = new GetOtuLabelsCommand(); } - else if(commandName == "remove.otulabels") { shellcommand = new RemoveOtuLabelsCommand(); } else if(commandName == "make.contigs") { shellcommand = new MakeContigsCommand(); } else if(commandName == "load.logfile") { shellcommand = new LoadLogfileCommand(); } else if(commandName == "sff.multiple") { shellcommand = new SffMultipleCommand(); } diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index e0f57251..8b0ef3a3 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -12,7 +12,6 @@ #include "readcolumn.h" #include "readmatrix.hpp" #include "clusterdoturcommand.h" -#include "deconvolutecommand.h" #include "sequence.hpp" #include "vsearch.h" #include "vsearchfileparser.h" diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp index 6da95392..8b38a277 100644 --- a/source/commands/clustersplitcommand.cpp +++ b/source/commands/clustersplitcommand.cpp @@ -8,7 +8,8 @@ */ #include "clustersplitcommand.h" - +#include "vsearch.h" +#include "vsearchfileparser.h" //********************************************************************************************************************** vector ClusterSplitCommand::setParameters(){ @@ -29,7 +30,7 @@ vector ClusterSplitCommand::setParameters(){ CommandParameter pprocessors("processors", "Number", "", "1", "", "", "","",false,false,true); parameters.push_back(pprocessors); CommandParameter pcutoff("cutoff", "Number", "", "0.25", "", "", "","",false,false,true); parameters.push_back(pcutoff); CommandParameter pprecision("precision", "Number", "", "100", "", "", "","",false,false); parameters.push_back(pprecision); - CommandParameter pmethod("method", "Multiple", "furthest-nearest-average-weighted", "average", "", "", "","",false,false); parameters.push_back(pmethod); + CommandParameter pmethod("method", "Multiple", "furthest-nearest-average-weighted-agc-dgc", "average", "", "", "","",false,false,true); parameters.push_back(pmethod); CommandParameter phard("hard", "Boolean", "", "T", "", "", "","",false,false); parameters.push_back(phard); CommandParameter pislist("islist", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(pislist); CommandParameter pclassic("classic", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(pclassic); @@ -65,7 +66,7 @@ string ClusterSplitCommand::getHelpString(){ helpString += "The cluster parameter allows you to indicate whether you want to run the clustering or just split the distance matrix, default=t"; helpString += "The cutoff parameter allow you to set the distance you want to cluster to, default is 0.25. \n"; helpString += "The precision parameter allows you specify the precision of the precision of the distances outputted, default=100, meaning 2 decimal places. \n"; - helpString += "The method allows you to specify what clustering algorithm you want to use, default=average, option furthest, nearest, or average. \n"; + helpString += "The method parameter allows you to enter your clustering mothod. Options are furthest, nearest, average, weighted, agc and dgc. Default=average. The agc and dgc methods require a fasta file."; helpString += "The splitmethod parameter allows you to specify how you want to split your distance file before you cluster, default=distance, options distance, classify or fasta. \n"; helpString += "The taxonomy parameter allows you to enter the taxonomy file for your sequences, this is only valid if you are using splitmethod=classify. Be sure your taxonomy file does not include the probability scores. \n"; helpString += "The taxlevel parameter allows you to specify the taxonomy level you want to use to split the distance file, default=3, meaning use the first taxon in each list. \n"; @@ -257,13 +258,13 @@ ClusterSplitCommand::ClusterSplitCommand(string option) { //is there are current file available for either of these? //give priority to column, then phylip, then fasta columnfile = m->getColumnFile(); - if (columnfile != "") { m->mothurOut("Using " + columnfile + " as input file for the column parameter."); m->mothurOutEndLine(); } + if (columnfile != "") { format = "column"; m->mothurOut("Using " + columnfile + " as input file for the column parameter."); m->mothurOutEndLine(); } else { phylipfile = m->getPhylipFile(); - if (phylipfile != "") { m->mothurOut("Using " + phylipfile + " as input file for the phylip parameter."); m->mothurOutEndLine(); } + if (phylipfile != "") { format = "phylip"; m->mothurOut("Using " + phylipfile + " as input file for the phylip parameter."); m->mothurOutEndLine(); } else { fastafile = m->getFastaFile(); - if (fastafile != "") { m->mothurOut("Using " + fastafile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } + if (fastafile != "") { m->mothurOut("Using " + fastafile + " as input file for the fasta parameter."); m->mothurOutEndLine(); } else { m->mothurOut("No valid current files. When executing a cluster.split command you must enter a file, phylip or a column or fastafile."); m->mothurOutEndLine(); abort = true; @@ -344,7 +345,7 @@ ClusterSplitCommand::ClusterSplitCommand(string option) { classic = m->isTrue(temp); //not using file option and don't have fasta method with classic - if (((splitmethod != "fasta") && classic) && (file == "")) { m->mothurOut("splitmethod must be fasta to use cluster.classic, or you must use the file option.\n"); abort=true; } + if (((splitmethod != "fasta") && classic) && (file == "")) { m->mothurOut("[ERROR]: splitmethod must be fasta to use cluster.classic, or you must use the file option.\n"); abort=true; } temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "0.25"; } m->mothurConvert(temp, cutoff); @@ -355,13 +356,18 @@ ClusterSplitCommand::ClusterSplitCommand(string option) { method = validParameter.validFile(parameters, "method", false); if (method == "not found") { method = "average"; } - if ((method == "furthest") || (method == "nearest") || (method == "average")) { m->mothurOut("Using splitmethod " + splitmethod + ".\n"); } - else { m->mothurOut("Not a valid clustering method. Valid clustering algorithms are furthest, nearest or average."); m->mothurOutEndLine(); abort = true; } - + if ((method == "furthest") || (method == "nearest") || (method == "average") || (method == "weighted") || (method == "agc") || (method == "dgc")) { } + else { m->mothurOut("[ERROR]: Not a valid clustering method. Valid clustering algorithms are furthest, nearest, average, weighted, agc and dgc."); m->mothurOutEndLine(); abort = true; } + + if ((method == "agc") || (method == "dgc")) { + if (fastafile == "") { m->mothurOut("[ERROR]: You must provide a fasta file when using the agc or dgc clustering methods, aborting\n."); abort = true;} + if (classic) { m->mothurOut("[ERROR]: You cannot use cluster.classic with the agc or dgc clustering methods, aborting\n."); abort = true; } + } + if ((splitmethod == "distance") || (splitmethod == "classify") || (splitmethod == "fasta")) { } - else { m->mothurOut(splitmethod + " is not a valid splitting method. Valid splitting algorithms are distance, classify or fasta."); m->mothurOutEndLine(); abort = true; } + else { m->mothurOut("[ERROR]: " + splitmethod + " is not a valid splitting method. Valid splitting algorithms are distance, classify or fasta."); m->mothurOutEndLine(); abort = true; } - if ((splitmethod == "classify") && (taxFile == "")) { m->mothurOut("You need to provide a taxonomy file if you are going to use the classify splitmethod."); m->mothurOutEndLine(); abort = true; } + if ((splitmethod == "classify") && (taxFile == "")) { m->mothurOut("[ERROR]: You need to provide a taxonomy file if you are going to use the classify splitmethod."); m->mothurOutEndLine(); abort = true; } showabund = validParameter.validFile(parameters, "showabund", false); if (showabund == "not found") { showabund = "T"; } @@ -464,7 +470,13 @@ int ClusterSplitCommand::execute(){ SplitMatrix* split; if (splitmethod == "distance") { split = new SplitMatrix(distfile, namefile, countfile, taxFile, cutoff, splitmethod, large); } else if (splitmethod == "classify") { split = new SplitMatrix(distfile, namefile, countfile, taxFile, taxLevelCutoff, splitmethod, large); } - else if (splitmethod == "fasta") { split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir); } + else if (splitmethod == "fasta") { + if ((method == "agc") || (method == "dgc")) { + split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir, "fasta"); + }else{ + split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir, "distance"); + } + } else { m->mothurOut("Not a valid splitting method. Valid splitting algorithms are distance, classify or fasta."); m->mothurOutEndLine(); return 0; } split->split(); @@ -1189,147 +1201,278 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile try { string listFileName = ""; - Cluster* cluster = NULL; - SparseDistanceMatrix* matrix = NULL; - ListVector* list = NULL; - ListVector oldList; - RAbundVector* rabund = NULL; - - if (m->control_pressed) { return listFileName; } - - m->mothurOutEndLine(); m->mothurOut("Reading " + thisDistFile); m->mothurOutEndLine(); - - ReadMatrix* read = new ReadColumnMatrix(thisDistFile); - read->setCutoff(cutoff); - - NameAssignment* nameMap = NULL; - CountTable* ct = NULL; - if(namefile != ""){ - nameMap = new NameAssignment(thisNamefile); - nameMap->readMap(); - read->read(nameMap); - }else if (countfile != "") { - ct = new CountTable(); - ct->readTable(thisNamefile, false, false); - read->read(ct); - }else { read->read(nameMap); } - - list = read->getListVector(); - oldList = *list; - matrix = read->getDMatrix(); - - if(countfile != "") { - rabund = new RAbundVector(); - createRabund(ct, list, rabund); //creates an rabund that includes the counts for the unique list - delete ct; - }else { rabund = new RAbundVector(list->getRAbundVector()); } - - delete read; read = NULL; - if (namefile != "") { delete nameMap; nameMap = NULL; } - - m->mothurOutEndLine(); m->mothurOut("Clustering " + thisDistFile); m->mothurOutEndLine(); - - //create cluster - float adjust = -1.0; - if (method == "furthest") { cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method, adjust); } - else if(method == "nearest"){ cluster = new SingleLinkage(rabund, list, matrix, cutoff, method, adjust); } - else if(method == "average"){ cluster = new AverageLinkage(rabund, list, matrix, cutoff, method, adjust); } - tag = cluster->getTag(); - - if (outputDir == "") { outputDir += m->hasPath(thisDistFile); } - fileroot = outputDir + m->getRootName(m->getSimpleName(thisDistFile)); - - ofstream listFile; - m->openOutputFile(fileroot+ tag + ".list", listFile); - - listFileName = fileroot+ tag + ".list"; - - float previousDist = 0.00000; - float rndPreviousDist = 0.00000; - - oldList = *list; - - print_start = true; - start = time(NULL); - double saveCutoff = cutoff; - - while (matrix->getSmallDist() < cutoff && matrix->getNNodes() > 0){ + if ((method == "agc") || (method == "dgc")) { runVsearchCluster(thisDistFile, thisNamefile, labels, smallestCutoff); } + else { - if (m->control_pressed) { //clean up - delete matrix; delete list; delete cluster; delete rabund; - listFile.close(); - m->mothurRemove(listFileName); - return listFileName; - } + Cluster* cluster = NULL; + SparseDistanceMatrix* matrix = NULL; + ListVector* list = NULL; + ListVector oldList; + RAbundVector* rabund = NULL; + + if (m->control_pressed) { return listFileName; } + + m->mothurOutEndLine(); m->mothurOut("Reading " + thisDistFile); m->mothurOutEndLine(); + + ReadMatrix* read = new ReadColumnMatrix(thisDistFile); + read->setCutoff(cutoff); + + NameAssignment* nameMap = NULL; + CountTable* ct = NULL; + if(namefile != ""){ + nameMap = new NameAssignment(thisNamefile); + nameMap->readMap(); + read->read(nameMap); + }else if (countfile != "") { + ct = new CountTable(); + ct->readTable(thisNamefile, false, false); + read->read(ct); + }else { read->read(nameMap); } + + list = read->getListVector(); + oldList = *list; + matrix = read->getDMatrix(); + + if(countfile != "") { + rabund = new RAbundVector(); + createRabund(ct, list, rabund); //creates an rabund that includes the counts for the unique list + delete ct; + }else { rabund = new RAbundVector(list->getRAbundVector()); } + + delete read; read = NULL; + if (namefile != "") { delete nameMap; nameMap = NULL; } + + m->mothurOutEndLine(); m->mothurOut("Clustering " + thisDistFile); m->mothurOutEndLine(); + + //create cluster + float adjust = -1.0; + if (method == "furthest") { cluster = new CompleteLinkage(rabund, list, matrix, cutoff, method, adjust); } + else if(method == "nearest"){ cluster = new SingleLinkage(rabund, list, matrix, cutoff, method, adjust); } + else if(method == "average"){ cluster = new AverageLinkage(rabund, list, matrix, cutoff, method, adjust); } + tag = cluster->getTag(); + + if (outputDir == "") { outputDir += m->hasPath(thisDistFile); } + fileroot = outputDir + m->getRootName(m->getSimpleName(thisDistFile)); + + ofstream listFile; + m->openOutputFile(fileroot+ tag + ".list", listFile); + + listFileName = fileroot+ tag + ".list"; + + float previousDist = 0.00000; + float rndPreviousDist = 0.00000; + + oldList = *list; - cluster->update(saveCutoff); + print_start = true; + start = time(NULL); + double saveCutoff = cutoff; - float dist = matrix->getSmallDist(); - float rndDist; - if (hard) { - rndDist = m->ceilDist(dist, precision); - }else{ - rndDist = m->roundDist(dist, precision); + while (matrix->getSmallDist() < cutoff && matrix->getNNodes() > 0){ + + if (m->control_pressed) { //clean up + delete matrix; delete list; delete cluster; delete rabund; + listFile.close(); + m->mothurRemove(listFileName); + return listFileName; + } + + cluster->update(saveCutoff); + + float dist = matrix->getSmallDist(); + float rndDist; + if (hard) { + rndDist = m->ceilDist(dist, precision); + }else{ + rndDist = m->roundDist(dist, precision); + } + + if(previousDist <= 0.0000 && dist != previousDist){ + oldList.setLabel("unique"); + oldList.print(listFile); + if (labels.count("unique") == 0) { labels.insert("unique"); } + } + else if(rndDist != rndPreviousDist){ + oldList.setLabel(toString(rndPreviousDist, length-1)); + oldList.print(listFile); + if (labels.count(toString(rndPreviousDist, length-1)) == 0) { labels.insert(toString(rndPreviousDist, length-1)); } + } + + previousDist = dist; + rndPreviousDist = rndDist; + oldList = *list; } - if(previousDist <= 0.0000 && dist != previousDist){ + + if(previousDist <= 0.0000){ oldList.setLabel("unique"); oldList.print(listFile); - if (labels.count("unique") == 0) { labels.insert("unique"); } + if (labels.count("unique") == 0) { labels.insert("unique"); } } - else if(rndDist != rndPreviousDist){ + else if(rndPreviousDistcontrol_pressed) { //clean up + m->mothurRemove(listFileName); + return listFileName; + } + + if (deleteFiles) { + m->mothurRemove(thisDistFile); + m->mothurRemove(thisNamefile); + } + + if (saveCutoff != cutoff) { + if (hard) { saveCutoff = m->ceilDist(saveCutoff, precision); } + else { saveCutoff = m->roundDist(saveCutoff, precision); } + + m->mothurOut("Cutoff was " + toString(cutoff) + " changed cutoff to " + toString(saveCutoff)); m->mothurOutEndLine(); + } + + if (saveCutoff < smallestCutoff) { smallestCutoff = saveCutoff; } } + return listFileName; - - if(previousDist <= 0.0000){ - oldList.setLabel("unique"); - oldList.print(listFile); - if (labels.count("unique") == 0) { labels.insert("unique"); } - } - else if(rndPreviousDisterrorOut(e, "ClusterSplitCommand", "clusterFile"); + exit(1); + } +} +//********************************************************************************************************************** + +string ClusterSplitCommand::runVsearchCluster(string thisDistFile, string thisNamefile, set& labels, double& smallestCutoff){ + try { + + m->mothurOutEndLine(); m->mothurOut("Clustering " + thisDistFile); m->mothurOutEndLine(); - delete matrix; delete list; delete cluster; delete rabund; - matrix = NULL; list = NULL; cluster = NULL; rabund = NULL; - listFile.close(); + string vsearchFastafile = ""; VsearchFileParser* vParse; + if (namefile != "") { vParse = new VsearchFileParser(thisDistFile, thisNamefile, "name"); } + else if (countfile != "") { vParse = new VsearchFileParser(thisDistFile, thisNamefile, "count"); } + else { m->mothurOut("[ERROR]: Opps, should never get here. ClusterSplitCommand::runVsearchCluster() \n"); m->control_pressed = true; } - if (m->control_pressed) { //clean up - m->mothurRemove(listFileName); - return listFileName; - } + if (m->control_pressed) { return 0; } - if (deleteFiles) { - m->mothurRemove(thisDistFile); - m->mothurRemove(thisNamefile); - } + vsearchFastafile = vParse->getVsearchFile(); - if (saveCutoff != cutoff) { - if (hard) { saveCutoff = m->ceilDist(saveCutoff, precision); } - else { saveCutoff = m->roundDist(saveCutoff, precision); } - - m->mothurOut("Cutoff was " + toString(cutoff) + " changed cutoff to " + toString(saveCutoff)); m->mothurOutEndLine(); - } + if (cutoff > 1.0) { m->mothurOut("You did not set a cutoff, using 0.03.\n"); cutoff = 0.03; } + + //Run vsearch + string ucVsearchFile = m->getSimpleName(vsearchFastafile) + ".clustered.uc"; + string logfile = m->getSimpleName(vsearchFastafile) + ".clustered.log"; + vsearchDriver(vsearchFastafile, ucVsearchFile, logfile); + + if (m->control_pressed) { m->mothurRemove(ucVsearchFile); m->mothurRemove(logfile); m->mothurRemove(vsearchFastafile); return 0; } + + if (outputDir == "") { outputDir += m->hasPath(thisDistFile); } + tag = method; + string listFileName = outputDir + m->getRootName(m->getSimpleName(thisDistFile)) + tag + ".list"; + + //Convert outputted *.uc file into a list file + vParse->createListFile(ucVsearchFile, listFileName, "", "", vParse->getNumBins(logfile), toString(1.0-cutoff)); delete vParse; + + //remove temp files + m->mothurRemove(ucVsearchFile); m->mothurRemove(logfile); m->mothurRemove(vsearchFastafile); + + if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - if (saveCutoff < smallestCutoff) { smallestCutoff = saveCutoff; } + labels.insert(toString(cutoff)); smallestCutoff = cutoff; return listFileName; + } + catch(exception& e) { + m->errorOut(e, "ClusterSplitCommand", "runVsearchCluster"); + exit(1); + } +} +//********************************************************************************************************************** + +int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, string logfile){ + try { - } - catch(exception& e) { - m->errorOut(e, "ClusterSplitCommand", "clusterFile"); - exit(1); - } + //vsearch --maxaccepts 16 --usersort --id 0.97 --minseqlength 30 --wordlength 8 --uc $ROOT.clustered.uc --cluster_smallmem $ROOT.sorted.fna --maxrejects 64 --strand both --log $ROOT.clustered.log --sizeorder + + + int numArgs = 11; if (method == "dgc") { numArgs = 10; } //no sizeorder for dgc + char** vsearchParameters; + vsearchParameters = new char*[numArgs]; + + vsearchParameters[0] = new char[8]; + *vsearchParameters[0] = '\0'; strncat(vsearchParameters[0], "vsearch", 7); + + int parameterCount = 1; + //--maxaccepts=16 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts=16", 15); parameterCount++; + + //--usersort + vsearchParameters[parameterCount] = new char[11]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--usersort", 10); parameterCount++; + + //--id=0.97 + cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); + if (cutoffString.length() > 4) { cutoffString = cutoffString.substr(0, 4); } + else if (cutoffString.length() < 4) { for (int i = cutoffString.length(); i < 4; i++) { cutoffString += "0"; } } + + cutoffString = "--id=" + cutoffString; + vsearchParameters[parameterCount] = new char[cutoffString.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), cutoffString.length()); parameterCount++; + + //--minseqlength=30 + vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength=30", 17); parameterCount++; + + //--wordlength=8 + vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength=8", 14); parameterCount++; + + //--uc=$ROOT.clustered.uc + string tempIn = "--uc=" + ucClusteredFile; + vsearchParameters[parameterCount] = new char[tempIn.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); + parameterCount++; + + //--cluster_smallmem $ROOT.sorted.fna + string tempSorted = "--cluster_smallmem=" + inputFile; + vsearchParameters[parameterCount] = new char[tempSorted.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempSorted.c_str(), tempSorted.length()); + parameterCount++; + + //--maxrejects=64 + vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects=64", 15); parameterCount++; + + //--strand=both + vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand=both", 13); parameterCount++; + + //--log=$ROOT.clustered.log + string tempLog = "--log=" + logfile; + vsearchParameters[parameterCount] = new char[tempLog.length()+1]; + *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempLog.c_str(), tempLog.length()); + parameterCount++; + + + if (method == "agc") { + //--sizeorder + vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + } + + if (m->debug) { for(int i = 0; i < numArgs; i++) { cout << vsearchParameters[i]; } cout << endl; } + + errno = 0; + vsearch_main(numArgs, vsearchParameters); + + //free memory + for(int i = 0; i < numArgs; i++) { delete[] vsearchParameters[i]; } + delete[] vsearchParameters; + + return 0; + } + catch(exception& e) { + m->errorOut(e, "ClusterSplitCommand", "vsearchDriver"); + exit(1); + } } //********************************************************************************************************************** diff --git a/source/commands/clustersplitcommand.h b/source/commands/clustersplitcommand.h index c4345f4a..c42c505d 100644 --- a/source/commands/clustersplitcommand.h +++ b/source/commands/clustersplitcommand.h @@ -67,6 +67,8 @@ class ClusterSplitCommand : public Command { string readFile(vector< map >&); string printFile(string, vector< map >&); int getLabels(string, set& listLabels); + int vsearchDriver(string, string, string); + string runVsearchCluster(string, string, set&, double&); }; /////////////////not working for Windows//////////////////////////////////////////////////////////// diff --git a/source/commands/getotulabelscommand.cpp b/source/commands/getotulabelscommand.cpp index bbaed03a..64492cb7 100644 --- a/source/commands/getotulabelscommand.cpp +++ b/source/commands/getotulabelscommand.cpp @@ -35,14 +35,14 @@ vector GetOtuLabelsCommand::setParameters(){ string GetOtuLabelsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The get.otulabels command can be used to select specific otus with the output from classify.otu, otu.association, or corr.axes commands. It can also be used to select a set of otus from a shared or list file.\n"; - helpString += "The get.otulabels parameters are: constaxonomy, otucorr, corraxes, shared, list, label and accnos.\n"; + helpString += "The get.otus command can be used to select specific otus with the output from classify.otu, otu.association, or corr.axes commands. It can also be used to select a set of otus from a shared or list file.\n"; + helpString += "The get.otus parameters are: constaxonomy, otucorr, corraxes, shared, list, label and accnos.\n"; helpString += "The constaxonomy parameter is used to input the results of the classify.otu command.\n"; helpString += "The otucorr parameter is used to input the results of the otu.association command.\n"; helpString += "The corraxes parameter is used to input the results of the corr.axes command.\n"; helpString += "The label parameter is used to analyze specific labels in your input. \n"; - helpString += "The get.otulabels commmand should be in the following format: \n"; - helpString += "get.otulabels(accnos=yourListOfOTULabels, corraxes=yourCorrAxesFile)\n"; + helpString += "The get.otus commmand should be in the following format: \n"; + helpString += "get.otus(accnos=yourListOfOTULabels, corraxes=yourCorrAxesFile)\n"; return helpString; } catch(exception& e) { diff --git a/source/commands/getotulabelscommand.h b/source/commands/getotulabelscommand.h index 06ad2716..60d13193 100644 --- a/source/commands/getotulabelscommand.h +++ b/source/commands/getotulabelscommand.h @@ -24,12 +24,12 @@ class GetOtuLabelsCommand : public Command { ~GetOtuLabelsCommand(){} vector setParameters(); - string getCommandName() { return "get.otulabels"; } + string getCommandName() { return "get.otus"; } string getCommandCategory() { return "OTU-Based Approaches"; } string getHelpString(); string getOutputPattern(string); - string getCitation() { return "http://www.mothur.org/wiki/Get.otulabels"; } + string getCitation() { return "http://www.mothur.org/wiki/Get.otus"; } string getDescription() { return "Can be used with output from classify.otu, otu.association, or corr.axes to select specific otus."; } int execute(); diff --git a/source/commands/removeotulabelscommand.cpp b/source/commands/removeotulabelscommand.cpp index 5fd84b97..de47d804 100644 --- a/source/commands/removeotulabelscommand.cpp +++ b/source/commands/removeotulabelscommand.cpp @@ -35,14 +35,14 @@ vector RemoveOtuLabelsCommand::setParameters(){ string RemoveOtuLabelsCommand::getHelpString(){ try { string helpString = ""; - helpString += "The remove.otulabels command can be used to remove specific otus with the output from classify.otu, otu.association, or corr.axes. It can also be used to select a set of otus from a shared or list file.\n"; - helpString += "The remove.otulabels parameters are: constaxonomy, otucorr, corraxes, shared, list, label and accnos.\n"; + helpString += "The remove.otus command can be used to remove specific otus with the output from classify.otu, otu.association, or corr.axes. It can also be used to select a set of otus from a shared or list file.\n"; + helpString += "The remove.otus parameters are: constaxonomy, otucorr, corraxes, shared, list, label and accnos.\n"; helpString += "The constaxonomy parameter is input the results of the classify.otu command.\n"; helpString += "The otucorr parameter is input the results of the otu.association command.\n"; helpString += "The corraxes parameter is input the results of the corr.axes command.\n"; helpString += "The label parameter is used to analyze specific labels in your input. \n"; - helpString += "The remove.otulabels commmand should be in the following format: \n"; - helpString += "remove.otulabels(accnos=yourListOfOTULabels, corraxes=yourCorrAxesFile)\n"; + helpString += "The remove.otus commmand should be in the following format: \n"; + helpString += "remove.otus(accnos=yourListOfOTULabels, corraxes=yourCorrAxesFile)\n"; return helpString; } catch(exception& e) { diff --git a/source/commands/removeotulabelscommand.h b/source/commands/removeotulabelscommand.h index 2fdb007f..2da2690e 100644 --- a/source/commands/removeotulabelscommand.h +++ b/source/commands/removeotulabelscommand.h @@ -24,12 +24,12 @@ class RemoveOtuLabelsCommand : public Command { ~RemoveOtuLabelsCommand(){} vector setParameters(); - string getCommandName() { return "remove.otulabels"; } + string getCommandName() { return "remove.otus"; } string getCommandCategory() { return "OTU-Based Approaches"; } string getHelpString(); string getOutputPattern(string); - string getCitation() { return "http://www.mothur.org/wiki/Get.otulabels"; } + string getCitation() { return "http://www.mothur.org/wiki/Get.otus"; } string getDescription() { return "Can be used with output from classify.otu, otu.association, or corr.axes to remove specific otus."; } int execute(); diff --git a/source/read/splitmatrix.cpp b/source/read/splitmatrix.cpp index 356ee749..8dee944d 100644 --- a/source/read/splitmatrix.cpp +++ b/source/read/splitmatrix.cpp @@ -23,10 +23,11 @@ SplitMatrix::SplitMatrix(string distfile, string name, string count, string tax, taxFile = tax; countfile = count; large = l; + outputType = "distance"; } /***********************************************************************/ -SplitMatrix::SplitMatrix(string ffile, string name, string count, string tax, float c, float cu, string t, int p, bool cl, string output){ +SplitMatrix::SplitMatrix(string ffile, string name, string count, string tax, float c, float cu, string t, int p, bool cl, string output, string ot){ m = MothurOut::getInstance(); fastafile = ffile; namefile = name; @@ -38,6 +39,7 @@ SplitMatrix::SplitMatrix(string ffile, string name, string count, string tax, fl processors = p; classic = cl; outputDir = output; + outputType = ot; } /***********************************************************************/ @@ -183,43 +185,47 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG if (error) { exit(1); } - //process each distance file - for (int i = 0; i < numGroups; i++) { - - string options = ""; - if (classic) { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", output=lt"; } - else { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", cutoff=" + toString(distCutoff); } - if (outputDir != "") { options += ", outputdir=" + outputDir; } - - m->mothurCalling = true; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - m->mothurOut("Running command: dist.seqs(" + options + ")"); m->mothurOutEndLine(); - m->mothurCalling = true; - - Command* command = new DistanceCommand(options); - - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - - command->execute(); - delete command; - m->mothurCalling = false; - - m->mothurRemove((fastafile + "." + toString(i) + ".temp")); - - //remove old names files just in case - if (namefile != "") { m->mothurRemove((namefile + "." + toString(i) + ".temp")); } - else { m->mothurRemove((countfile + "." + toString(i) + ".temp")); } - } + if (outputType == "distance") { //create distance matrices for each fasta file + //process each distance file + for (int i = 0; i < numGroups; i++) { + + string options = ""; + if (classic) { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", output=lt"; } + else { options = "fasta=" + (fastafile + "." + toString(i) + ".temp") + ", processors=" + toString(processors) + ", cutoff=" + toString(distCutoff); } + if (outputDir != "") { options += ", outputdir=" + outputDir; } + + m->mothurCalling = true; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running command: dist.seqs(" + options + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* command = new DistanceCommand(options); + + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + command->execute(); + delete command; + m->mothurCalling = false; + + m->mothurRemove((fastafile + "." + toString(i) + ".temp")); + + //remove old names files just in case + if (namefile != "") { m->mothurRemove((namefile + "." + toString(i) + ".temp")); } + else { m->mothurRemove((countfile + "." + toString(i) + ".temp")); } + } + } //restore old fasta file name since dist.seqs overwrites it with the temp files m->setFastaFile(fastafile); vector tempDistFiles; for(int i=0;ihasPath(fastafile); } - string tempDistFile = ""; - if (classic) { tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "phylip.dist";} - else { tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "dist"; } + string tempDistFile = (fastafile + "." + toString(i) + ".temp"); + if (outputType == "distance") { + if (classic) { tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "phylip.dist";} + else { tempDistFile = outputDir + m->getRootName(m->getSimpleName((fastafile + "." + toString(i) + ".temp"))) + "dist"; } + } tempDistFiles.push_back(tempDistFile); } diff --git a/source/read/splitmatrix.h b/source/read/splitmatrix.h index 7b468e99..32a50a75 100644 --- a/source/read/splitmatrix.h +++ b/source/read/splitmatrix.h @@ -20,7 +20,7 @@ class SplitMatrix { public: SplitMatrix(string, string, string, string, float, string, bool); //column formatted distance file, namesfile, countfile, cutoff, method, large - SplitMatrix(string, string, string, string, float, float, string, int, bool, string); //fastafile, namefile, countfile, taxFile, taxcutoff, cutoff, method, processors, classic, outputDir + SplitMatrix(string, string, string, string, float, float, string, int, bool, string, string); //fastafile, namefile, countfile, taxFile, taxcutoff, cutoff, method, processors, classic, outputDir, ("fasta" or "distance") ~SplitMatrix(); int split(); @@ -30,7 +30,7 @@ class SplitMatrix { private: MothurOut* m; - string distFile, namefile, singleton, method, taxFile, fastafile, outputDir, countfile; + string distFile, namefile, singleton, method, taxFile, fastafile, outputDir, countfile, outputType; vector< map< string, string> > dists; float cutoff, distCutoff; bool large, classic; diff --git a/source/vsearch_src/abundance.h b/source/vsearch_src/abundance.h index 71663d95..6d36474f 100644 --- a/source/vsearch_src/abundance.h +++ b/source/vsearch_src/abundance.h @@ -61,6 +61,10 @@ */ +#if defined(_WIN32) +#include +#include +#endif typedef struct abundance_s { diff --git a/source/vsearch_src/arch.cc b/source/vsearch_src/arch.cc index 4a4946d0..a22c788f 100644 --- a/source/vsearch_src/arch.cc +++ b/source/vsearch_src/arch.cc @@ -58,19 +58,29 @@ */ +#if defined(_WIN32) +#include +#include +#endif + #include "vsearch.h" + unsigned long arch_get_memused() { struct rusage r_usage; getrusage(RUSAGE_SELF, & r_usage); - -#if defined __APPLE__ + +#if defined (__APPLE__) || (__MACH__) /* Mac: ru_maxrss gives the size in bytes */ return r_usage.ru_maxrss; -#else +#elif (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) /* Linux: ru_maxrss gives the size in kilobytes */ return r_usage.ru_maxrss * 1024; +#else + PROCESS_MEMORY_COUNTERS info; + GetProcessMemoryInfo( GetCurrentProcess( ), &info, sizeof(info) ); + return (size_t)info.PeakWorkingSetSize; #endif } diff --git a/source/vsearch_src/vsearch.cc b/source/vsearch_src/vsearch.cc index 9ee05f72..d1e3352f 100644 --- a/source/vsearch_src/vsearch.cc +++ b/source/vsearch_src/vsearch.cc @@ -2025,7 +2025,7 @@ int vsearch_main(int argc, char *argv[]) } show_header(); -fprintf(stdout, "show_header\n"); + if (!sse2_present) fatal("Sorry, this program requires a cpu with SSE2."); diff --git a/source/vsearch_src/vsearch.h b/source/vsearch_src/vsearch.h index 753e8504..3e0f06bf 100644 --- a/source/vsearch_src/vsearch.h +++ b/source/vsearch_src/vsearch.h @@ -154,6 +154,8 @@ #endif #else #define PROG_ARCH "Windows_x86_64" + #include + #include #endif diff --git a/source/vsearch_src/vsearchfileparser.cpp b/source/vsearch_src/vsearchfileparser.cpp index e52a3443..d938fc06 100644 --- a/source/vsearch_src/vsearchfileparser.cpp +++ b/source/vsearch_src/vsearchfileparser.cpp @@ -185,13 +185,15 @@ int VsearchFileParser::createListFile(string inputFile, string listFile, string }else { list.print(out); - //print sabund and rabund - ofstream sabund, rabund; - m->openOutputFile(sabundFile, sabund); - m->openOutputFile(rabundFile, rabund); + if ((sabundFile != "") && (rabundFile != "")){ + //print sabund and rabund + ofstream sabund, rabund; + m->openOutputFile(sabundFile, sabund); + m->openOutputFile(rabundFile, rabund); - list.getRAbundVector().print(rabund); rabund.close(); - list.getSAbundVector().print(sabund); sabund.close(); + list.getRAbundVector().print(rabund); rabund.close(); + list.getSAbundVector().print(sabund); sabund.close(); + } } out.close(); From 029b56e7e1cb5e42e8ce1ac446cef90303459900 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 4 Jan 2016 14:11:07 -0500 Subject: [PATCH 067/135] Makefile updates for version 1.37.0 Changes for easier builds, assumes users have boost installed. --- Mothur.xcodeproj/project.pbxproj | 8 ++++---- makefile | 11 ++++++++--- 2 files changed, 12 insertions(+), 7 deletions(-) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 1064f0d5..5806e67c 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -2145,14 +2145,14 @@ A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */, A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */, A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, - A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, - A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, - 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */, - 48705ABC19BE32C50075E977 /* getmimarkspackagecommand.h */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */, A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */, A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */, + A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, + A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, + 48705ABB19BE32C50075E977 /* getmimarkspackagecommand.cpp */, + 48705ABC19BE32C50075E977 /* getmimarkspackagecommand.h */, A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */, A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */, A70056E8156A93E300924A2D /* getotulabelscommand.h */, diff --git a/makefile b/makefile index 5f210a9b..e053d4ed 100644 --- a/makefile +++ b/makefile @@ -11,10 +11,10 @@ 64BIT_VERSION ?= yes USEREADLINE ?= yes USEBOOST ?= yes +OPTIMIZE ?= yes MOTHUR_FILES="\"Enter_your_default_path_here\"" -RELEASE_DATE = "\"7/27/2015\"" -VERSION = "\"1.36.1\"" - +RELEASE_DATE = "\"1/04/2016\"" +VERSION = "\"1.37.0\"" ifeq ($(strip $(64BIT_VERSION)),yes) CXXFLAGS += -DBIT_VERSION @@ -44,6 +44,11 @@ ifeq ($(strip $(USEBOOST)),yes) LIBS += -lboost_iostreams endif +# Optimize to level 3: +ifeq ($(strip $(OPTIMIZE)),yes) + CXXFLAGS += -O3 +endif + # # INCLUDE directories for mothur # From ee8500e8db04e6ccecf1f0892680c5023472c542 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 4 Jan 2016 14:13:23 -0500 Subject: [PATCH 068/135] Fixing typos in error messages --- source/commands/chimeraslayercommand.cpp | 2 +- source/commands/makecontigscommand.cpp | 2 +- source/read/splitmatrix.cpp | 2 +- source/venn.cpp | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/source/commands/chimeraslayercommand.cpp b/source/commands/chimeraslayercommand.cpp index d26a16b0..d0163648 100644 --- a/source/commands/chimeraslayercommand.cpp +++ b/source/commands/chimeraslayercommand.cpp @@ -86,7 +86,7 @@ string ChimeraSlayerCommand::getHelpString(){ helpString += "The mincov parameter allows you to specify minimum coverage by closest matches found in template. Default is 70, meaning 70%. \n"; helpString += "The minbs parameter allows you to specify minimum bootstrap support for calling a sequence chimeric. Default is 90, meaning 90%. \n"; helpString += "The minsnp parameter allows you to specify percent of SNPs to sample on each side of breakpoint for computing bootstrap support (default: 10) \n"; - helpString += "The search parameter allows you to specify search method for finding the closest parent. Choices are blast, and kmer, default blast. \n"; + helpString += "The search parameter allows you to specify search method for finding the closest parent. Choices are blast and kmer. Default=blast. \n"; helpString += "The realign parameter allows you to realign the query to the potential parents. Choices are true or false, default true. \n"; helpString += "The blastlocation parameter allows you to specify the location of your blast executable. By default mothur will look in ./blast/bin relative to mothur's executable. \n"; helpString += "If the save parameter is set to true the reference sequences will be saved in memory, to clear them later you can use the clear.memory command. Default=f."; diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index d86b06a5..8012bbca 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -396,7 +396,7 @@ MakeContigsCommand::MakeContigsCommand(string option) { temp = validParameter.validFile(parameters, "rename", false); if (temp == "not found") { temp = "T"; } renameSeq = m->isTrue(temp); - if (allFiles && (oligosfile == "")) { m->mothurOut("You can only use the allfiles option with an oligos file.\n"); abort = true; } + if (allFiles && (oligosfile == "")) { m->mothurOut("[ERROR]: You can only use the allfiles option with an oligos file.\n"); abort = true; } qual_score.resize(47); qual_score[0] = -2; qual_score[1] = -1.58147; qual_score[2] = -0.996843; qual_score[3] = -0.695524; qual_score[4] = -0.507676; qual_score[5] = -0.38013; qual_score[6] = -0.289268; qual_score[7] = -0.222552; qual_score[8] = -0.172557; qual_score[9] = -0.134552; qual_score[10] = -0.105361; qual_score[11] = -0.0827653; qual_score[12] = -0.0651742; qual_score[13] = -0.0514183; qual_score[14] = -0.0406248; qual_score[15] = -0.0321336; qual_score[16] = -0.0254397; qual_score[17] = -0.0201544; qual_score[18] = -0.0159759; qual_score[19] = -0.0126692; qual_score[20] = -0.0100503; qual_score[21] = -0.007975; qual_score[22] = -0.00632956; qual_score[23] = -0.00502447; qual_score[24] = -0.00398902; qual_score[25] = -0.00316729; qual_score[26] = -0.00251505; qual_score[27] = -0.00199726; qual_score[28] = -0.00158615; qual_score[29] = -0.00125972; qual_score[30] = -0.0010005; qual_score[31] = -0.000794644; qual_score[32] = -0.000631156; qual_score[33] = -0.000501313; qual_score[34] = -0.000398186; qual_score[35] = -0.000316278; qual_score[36] = -0.00025122; qual_score[37] = -0.000199546; qual_score[38] = -0.000158502; qual_score[39] = -0.0001259; qual_score[40] = -0.000100005; qual_score[41] = -7.9436e-05; qual_score[42] = -6.30977e-05; qual_score[43] = -5.012e-05; qual_score[44] = -3.98115e-05; qual_score[45] = -3.16233e-05; qual_score[46] = -2.51192e-05; diff --git a/source/read/splitmatrix.cpp b/source/read/splitmatrix.cpp index 8dee944d..65a472fe 100644 --- a/source/read/splitmatrix.cpp +++ b/source/read/splitmatrix.cpp @@ -178,7 +178,7 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG bool error = false; //warn about sequence in groups that are not in fasta file for(it = copyGroups.begin(); it != copyGroups.end(); it++) { - m->mothurOut("ERROR: " + it->first + " is missing from your fastafile. This could happen if your taxonomy file is not unique and your fastafile is, or it could indicate and error."); m->mothurOutEndLine(); + m->mothurOut("ERROR: " + it->first + " is missing from your fastafile. This could happen if your taxonomy file is not unique and your fastafile is, or it could indicate an error."); m->mothurOutEndLine(); error = true; } copyGroups.clear(); diff --git a/source/venn.cpp b/source/venn.cpp index 8e91b8a9..b3eac046 100644 --- a/source/venn.cpp +++ b/source/venn.cpp @@ -231,7 +231,7 @@ vector Venn::getPic(vector lookup, vector\n"; - outsvg << "The number of sepecies shared between groups " + lookup[0]->getGroup() + " and " + lookup[1]->getGroup() + " is " + toString(shared[0]); + outsvg << "The number of species shared between groups " + lookup[0]->getGroup() + " and " + lookup[1]->getGroup() + " is " + toString(shared[0]); if (nseqs) { outsvg << ", and the number of squences is " + toString(sharedVal) + "; " + toString((sharedVal / (float)(numSeqsA + numSeqsB))*100) + "% of these sequences are shared"; } outsvg << "\n"; From 4d1ecbfc17477231a7d3203accd7e74e80af1505 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Jan 2016 13:38:32 -0500 Subject: [PATCH 069/135] Fixed windows version unaligned option. Bug Fix #24 --- source/commands/preclustercommand.cpp | 1 + source/commands/preclustercommand.h | 7 +++---- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/source/commands/preclustercommand.cpp b/source/commands/preclustercommand.cpp index 1915c891..b8ad077e 100644 --- a/source/commands/preclustercommand.cpp +++ b/source/commands/preclustercommand.cpp @@ -690,6 +690,7 @@ int PreClusterCommand::process(string newMapFile){ alignSeqs[j].active = 0; alignSeqs[j].numIdentical = 0; + alignSeqs[j].diffs = mismatch; count++; } }//end if j active diff --git a/source/commands/preclustercommand.h b/source/commands/preclustercommand.h index fb604064..afe49b36 100644 --- a/source/commands/preclustercommand.h +++ b/source/commands/preclustercommand.h @@ -303,8 +303,8 @@ static DWORD WINAPI MyPreclusterThreadFunction(LPVOID lpParam){ if (pDataArray->method == "unaligned") { //align to eachother - Sequence seqI("seq1", alignSeqs[i].seq.getAligned()); - Sequence seqJ("seq2", alignSeqs[j].seq.getAligned()); + Sequence seqI("seq1", alignSeqs[i].seq.getUnaligned()); + Sequence seqJ("seq2", alignSeqs[j].seq.getUnaligned()); //align seq2 to seq1 - less abundant to more abundant alignment->align(seqJ.getUnaligned(), seqI.getUnaligned()); @@ -443,13 +443,12 @@ static DWORD WINAPI MyPreclusterThreadFunction(LPVOID lpParam){ pDataArray->m->openOutputFileAppend(pDataArray->newFName, outFasta); pDataArray->m->openOutputFileAppend(pDataArray->newNName, outNames); - + for (int i = 0; i < alignSeqs.size(); i++) { if (alignSeqs[i].numIdentical != 0) { alignSeqs[i].seq.printSequence(outFasta); if (pDataArray->countfile != "") { outNames << pDataArray->groups[k] << '\t' << alignSeqs[i].seq.getName() << '\t' << alignSeqs[i].names << endl; }else { outNames << alignSeqs[i].seq.getName() << '\t' << alignSeqs[i].names << endl; } - } } From 5260b343a17efe4aa43af2d649886ab018e73896 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Jan 2016 13:44:55 -0500 Subject: [PATCH 070/135] Adds functions to convert vectors to strings. string getStringFromVector(vector& mothurVector, string myDelimString) creates string like "3.0, 2.4, ... 5.9" where ', ' is myDelimString, and v[0] = 3.0, v[1] = 2.4, ... v[n] = 5.9. --- source/mothurout.cpp | 65 ++++++++++++++++++++++++++++++++++++++++++++++++++++ source/mothurout.h | 4 +++- 2 files changed, 68 insertions(+), 1 deletion(-) diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 308532ef..59eb7082 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -4762,6 +4762,71 @@ int MothurOut::printVsearchFile(vector& nameMapCount, string fi exit(1); } } +//********************************************************************************************************************** +string MothurOut::getStringFromVector(vector& list, string delim){ + try { + string result = ""; + + if (list.size() == 0) { return result; } + + result = list[0]; + + for (int i = 1; i < list.size(); i++) { + if (control_pressed) { break; } + result += delim + list[i]; + } + + return result; + } + catch(exception& e) { + errorOut(e, "MothurOut", "getStringFromVector"); + exit(1); + } +} +//********************************************************************************************************************** +string MothurOut::getStringFromVector(vector& list, string delim){ + try { + string result = ""; + + if (list.size() == 0) { return result; } + + result = list[0]; + + for (int i = 1; i < list.size(); i++) { + if (control_pressed) { break; } + string temp = toString(list[i]); + result += delim + temp; + } + + return result; + } + catch(exception& e) { + errorOut(e, "MothurOut", "getStringFromVector"); + exit(1); + } +} +//********************************************************************************************************************** +string MothurOut::getStringFromVector(vector& list, string delim){ + try { + string result = ""; + + if (list.size() == 0) { return result; } + + result = list[0]; + + for (int i = 1; i < list.size(); i++) { + if (control_pressed) { break; } + string temp = toString(list[i]); + result += delim + temp; + } + + return result; + } + catch(exception& e) { + errorOut(e, "MothurOut", "getStringFromVector"); + exit(1); + } +} /**************************************************************************************************/ diff --git a/source/mothurout.h b/source/mothurout.h index ae3e432d..bc1e3b19 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -167,7 +167,9 @@ class MothurOut { string getSimpleLabel(string); string findEdianness(); string mothurGetpid(int); - + string getStringFromVector(vector&, string); //creates string like "v[0], v[1], ... v[n]" where ', ' is string. + string getStringFromVector(vector&, string); //creates string like "v[0], v[1], ... v[n]" where ', ' is string. + string getStringFromVector(vector&, string); //creates string like "v[0], v[1], ... v[n]" where ', ' is string. //string manipulation void splitAtEquals(string&, string&); From 8dcdef633da4b9a39b6d974b915ba6b451b00b99 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Jan 2016 13:46:05 -0500 Subject: [PATCH 071/135] Linear Algebra return is numCols=0 Bug Fix. --- source/linearalgebra.cpp | 2 ++ 1 file changed, 2 insertions(+) diff --git a/source/linearalgebra.cpp b/source/linearalgebra.cpp index b634014f..5fe8928f 100644 --- a/source/linearalgebra.cpp +++ b/source/linearalgebra.cpp @@ -2352,12 +2352,14 @@ vector< vector > LinearAlgebra::lda(vector< vector >& a, vector< int LinearAlgebra::svd(vector< vector >& a, vector& w, vector< vector >& v) { try { + int flag, i, its, j, jj, k, l, nm; double c, f, h, s, x, y, z; double anorm = 0.0, g = 0.0, scale = 0.0; int numRows = a.size(); if (numRows == 0) { return 0; } int numCols = a[0].size(); + if (numCols == 0) { return 0; } w.resize(numCols, 0.0); v.resize(numCols); for (int i = 0; i < numCols; i++) { v[i].resize(numRows, 0.0); } From be0e2e9d5e3a899fce7620504d2aa1d60185d8ab Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Jan 2016 14:08:56 -0500 Subject: [PATCH 072/135] Adds function to SharedRabundFloatVector returns vector of abundances ~Enhancement --- source/datastructures/sharedrabundfloatvector.cpp | 10 ++++++++++ source/datastructures/sharedrabundfloatvector.h | 1 + 2 files changed, 11 insertions(+) diff --git a/source/datastructures/sharedrabundfloatvector.cpp b/source/datastructures/sharedrabundfloatvector.cpp index a440bfd7..abcc6b8c 100644 --- a/source/datastructures/sharedrabundfloatvector.cpp +++ b/source/datastructures/sharedrabundfloatvector.cpp @@ -201,6 +201,16 @@ vector SharedRAbundFloatVector::getAbundances(){ return abunds; } /***********************************************************************/ +//returns vector of abundances +vector SharedRAbundFloatVector::getAbundances(string makeDouble){ + vector abunds; + for (int i = 0; i < data.size(); i++) { + abunds.push_back((double)(data[i].abundance)); + } + + return abunds; +} +/***********************************************************************/ individualFloat SharedRAbundFloatVector::get(int index){ return data[index]; } diff --git a/source/datastructures/sharedrabundfloatvector.h b/source/datastructures/sharedrabundfloatvector.h index cf387063..cb03143c 100644 --- a/source/datastructures/sharedrabundfloatvector.h +++ b/source/datastructures/sharedrabundfloatvector.h @@ -46,6 +46,7 @@ class SharedRAbundFloatVector : public DataVector { vector getData(); float getAbundance(int); vector getAbundances(); + vector getAbundances(string); void push_front(float, int, string); //abundance, otu, groupname void insert(float, int, string); //abundance, otu, groupname void push_back(float, string); //abundance, groupname From bcabdf27537c4bf2edf599777f8fdf6edfa1a232 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Jan 2016 14:09:42 -0500 Subject: [PATCH 073/135] Adds debug message to remove.linage ~Enhancement --- source/commands/removelineagecommand.cpp | 1 + 1 file changed, 1 insertion(+) diff --git a/source/commands/removelineagecommand.cpp b/source/commands/removelineagecommand.cpp index 8e09333d..0451fddd 100644 --- a/source/commands/removelineagecommand.cpp +++ b/source/commands/removelineagecommand.cpp @@ -306,6 +306,7 @@ RemoveLineageCommand::RemoveLineageCommand(string option) { if (taxons[(taxons.length()-1)] == '\'') { taxons = taxons.substr(0, (taxons.length()-1)); } } m->splitAtChar(taxons, listOfTaxons, '-'); + if (m->debug) { string taxonString = m->getStringFromVector(listOfTaxons, ", "); m->mothurOut("[DEBUG]: " + taxonString + "\n."); } if ((fastafile == "") && (constaxonomy == "") && (namefile == "") && (groupfile == "") && (alignfile == "") && (listfile == "") && (taxfile == "") && (countfile == "")) { m->mothurOut("You must provide one of the following: fasta, name, group, count, alignreport, taxonomy, constaxonomy, shared or listfile."); m->mothurOutEndLine(); abort = true; } From 69562e43b745d5c57d9235df593d2f6cdc851854 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Jan 2016 14:12:37 -0500 Subject: [PATCH 074/135] Wrong variable name project file read function ~Command:Make.sra ~Bugs --- source/commands/sracommand.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/commands/sracommand.cpp b/source/commands/sracommand.cpp index cb11792b..02c78945 100644 --- a/source/commands/sracommand.cpp +++ b/source/commands/sracommand.cpp @@ -648,7 +648,7 @@ int SRACommand::readContactFile(){ else { m->mothurOut("[ERROR]: " + centerType + " is not a center type option. Valid center type options are consortium, center, institute and lab. This is a controlled vocabulary section in the XML file that will be generated."); m->mothurOutEndLine(); m->control_pressed = true; } }else if (key == "OWNERSHIP") { ownership = value; - for (int i = 0; i < centerType.length(); i++) { centerType[i] = tolower(ownership[i]); } + for (int i = 0; i < ownership.length(); i++) { ownership[i] = tolower(ownership[i]); } if ((ownership == "owner") || (ownership == "participant")) {} else { m->mothurOut("[ERROR]: " + ownership + " is not a ownership option. Valid ownership options are owner or participant. This is a controlled vocabulary section in the XML file that will be generated."); m->mothurOutEndLine(); m->control_pressed = true; } }else if (key == "DESCRIPTION") { description = value; } From e1bbd60bd169b7ebe5713c32079445c8292c2c64 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 16:36:06 -0500 Subject: [PATCH 075/135] Fix tabs/spaces before uchime recipe --- makefile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/makefile b/makefile index 5f210a9b..4152443f 100644 --- a/makefile +++ b/makefile @@ -69,7 +69,7 @@ mothur : $(OBJECTS) uchime $(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS) uchime: - cd source/uchime_src && ./mk && mv uchime ../../ && cd .. + cd source/uchime_src && ./mk && mv uchime ../../ && cd .. install : mothur @@ -86,4 +86,3 @@ install : mothur clean : @rm -f $(OBJECTS) @rm -f uchime - From 153cfcde420b5ca113c4c61cd71f9524745cc039 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 16:39:01 -0500 Subject: [PATCH 076/135] Introduce travis-ci to check builds --- .travis.yml | 2 ++ 1 file changed, 2 insertions(+) create mode 100644 .travis.yml diff --git a/.travis.yml b/.travis.yml new file mode 100644 index 00000000..a64d9605 --- /dev/null +++ b/.travis.yml @@ -0,0 +1,2 @@ +language: C++ +script: make install USEREADLINE='no' USEBOOST='no' From d7ade6a4fc91afbf8b463c904ea6aa3fc668e7b7 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 16:50:49 -0500 Subject: [PATCH 077/135] Add travis-ci build status --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index c5e2e7e4..430d72a3 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,5 @@ +[![Build Status](https://travis-ci.org/mothur/mothur.svg?branch=v.1.37.0)](https://travis-ci.org/mothur/mothur) + # README Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. mothur is available under the GPL license. From f3148813b4a30b5b553c30003cb30b2ec297c622 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 19:49:07 -0500 Subject: [PATCH 078/135] Add mac and linux os --- .travis.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.travis.yml b/.travis.yml index a64d9605..bc9792d4 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,2 +1,5 @@ language: C++ script: make install USEREADLINE='no' USEBOOST='no' +os: + mac + linux From fa18449f868b20e2894e726f1d247429e63a66a9 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 19:50:11 -0500 Subject: [PATCH 079/135] Replace tab with spaces --- .travis.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.travis.yml b/.travis.yml index bc9792d4..0c020ce3 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,5 +1,5 @@ language: C++ script: make install USEREADLINE='no' USEBOOST='no' os: - mac - linux + mac + linux From 6baf43a9743e559e22fa872e58fb84d110d9d715 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 20:00:52 -0500 Subject: [PATCH 080/135] Fix travis-ci syntax --- .travis.yml | 17 ++++++++++++++--- 1 file changed, 14 insertions(+), 3 deletions(-) diff --git a/.travis.yml b/.travis.yml index 0c020ce3..421a681c 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,5 +1,16 @@ language: C++ -script: make install USEREADLINE='no' USEBOOST='no' os: - mac - linux + - osx + - linux + +addons: + apt: + packages: + - readline + - boost + +before install: + - if [[ "TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi + - if [[ "TRAVIS_OS_NAME" == "osx" ]]; then brew install readline boost; fi + +script: make install USEREADLINE='no' USEBOOST='no' From 9c6042015f8e1972c733fc916a4fa6417986ba33 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 20:09:18 -0500 Subject: [PATCH 081/135] Build with readline and boost libraries --- .travis.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.travis.yml b/.travis.yml index 421a681c..0fae121e 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,5 +1,5 @@ language: C++ -os: +os: - osx - linux @@ -13,4 +13,4 @@ before install: - if [[ "TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi - if [[ "TRAVIS_OS_NAME" == "osx" ]]; then brew install readline boost; fi -script: make install USEREADLINE='no' USEBOOST='no' +script: make install From 1b18f2b975447203d389b14665f4983fbb3a3b6d Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 20:22:22 -0500 Subject: [PATCH 082/135] Fix apt package names --- .travis.yml | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/.travis.yml b/.travis.yml index 0fae121e..99281e26 100644 --- a/.travis.yml +++ b/.travis.yml @@ -6,8 +6,9 @@ os: addons: apt: packages: - - readline - - boost + - libreadline6 + - libreadline6-dev + - libboost-all-dev before install: - if [[ "TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi From 7f8c65bcd805a23753b459ff268a623332cc34b1 Mon Sep 17 00:00:00 2001 From: Pat Schloss Date: Mon, 11 Jan 2016 20:24:04 -0500 Subject: [PATCH 083/135] Remove stray tab --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 99281e26..5eee8ce8 100644 --- a/.travis.yml +++ b/.travis.yml @@ -7,7 +7,7 @@ addons: apt: packages: - libreadline6 - - libreadline6-dev + - libreadline6-dev - libboost-all-dev before install: From a5084955d66dcaf00cbc78a6ae52f245896e0f74 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 13 Jan 2016 13:01:52 -0500 Subject: [PATCH 084/135] Initialize error variable in sortFastaFile ~Command:Chimera.slayer Bug Fix --- source/commands/chimeraslayercommand.cpp | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/source/commands/chimeraslayercommand.cpp b/source/commands/chimeraslayercommand.cpp index d0163648..f532fde1 100644 --- a/source/commands/chimeraslayercommand.cpp +++ b/source/commands/chimeraslayercommand.cpp @@ -1833,13 +1833,14 @@ map ChimeraSlayerCommand::sortFastaFile(string fastaFile, string na //read namefile or countfile vector nameMapCount; - int error; + int error = 0; if (hasCount) { CountTable ct; ct.readTable(nameFile, true, false); for(map::iterator it = seqs.begin(); it != seqs.end(); it++) { int num = ct.getNumSeqs(it->first); + if (num == 0) { error = 1; } else { seqPriorityNode temp(num, it->second, it->first); @@ -1867,7 +1868,7 @@ map ChimeraSlayerCommand::sortFastaFile(string fastaFile, string na out.close(); rename(newFasta.c_str(), fastaFile.c_str()); - + return nameAbund; } From beab5559998a9f86dd1ab4594038e25dc25a39d9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 13 Jan 2016 13:03:47 -0500 Subject: [PATCH 085/135] Adds debug to constaxonomy read ~Command:Get.otulabels --- source/commands/getotulabelscommand.cpp | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/source/commands/getotulabelscommand.cpp b/source/commands/getotulabelscommand.cpp index 64492cb7..7186912b 100644 --- a/source/commands/getotulabelscommand.cpp +++ b/source/commands/getotulabelscommand.cpp @@ -239,7 +239,7 @@ int GetOtuLabelsCommand::execute(){ set newLabels; for (set::iterator it = labels.begin(); it != labels.end(); it++) { newLabels.insert(m->getSimpleLabel(*it)); } labels = newLabels; - + if (m->control_pressed) { return 0; } //read through the correct file and output lines you want to keep @@ -307,6 +307,8 @@ int GetOtuLabelsCommand::readClassifyOtu(){ in >> otu >> size >> tax; m->gobble(in); + if (m->debug) { m->mothurOut("Otu=" + otu + ", size=" + toString(size) + ", tax=" + tax + "\n"); } + if (labels.count(m->getSimpleLabel(otu)) != 0) { wroteSomething = true; selectedCount++; From 7535f0d48128d0429e1592a1f1ab6c1cc910e127 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 20 Jan 2016 12:21:56 -0500 Subject: [PATCH 086/135] Changes bootstrap theshold to 80 Command:Classify.seqs #192 --- source/commands/classifyseqscommand.cpp | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 81a6dc61..1f80d3c8 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -29,7 +29,7 @@ vector ClassifySeqsCommand::setParameters(){ CommandParameter pmismatch("mismatch", "Number", "", "-1.0", "", "", "","",false,false); parameters.push_back(pmismatch); CommandParameter pgapopen("gapopen", "Number", "", "-2.0", "", "", "","",false,false); parameters.push_back(pgapopen); CommandParameter pgapextend("gapextend", "Number", "", "-1.0", "", "", "","",false,false); parameters.push_back(pgapextend); - CommandParameter pcutoff("cutoff", "Number", "", "0", "", "", "","",false,true); parameters.push_back(pcutoff); + CommandParameter pcutoff("cutoff", "Number", "", "80", "", "", "","",false,true); parameters.push_back(pcutoff); CommandParameter pprobs("probs", "Boolean", "", "T", "", "", "","",false,false); parameters.push_back(pprobs); CommandParameter piters("iters", "Number", "", "100", "", "", "","",false,true); parameters.push_back(piters); CommandParameter psave("save", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(psave); @@ -69,7 +69,7 @@ string ClassifySeqsCommand::getHelpString(){ helpString += "The gapopen parameter allows you to specify the penalty for opening a gap in an alignment. The default is -2.0.\n"; helpString += "The gapextend parameter allows you to specify the penalty for extending a gap in an alignment. The default is -1.0.\n"; helpString += "The numwanted parameter allows you to specify the number of sequence matches you want with the knn method. The default is 10.\n"; - helpString += "The cutoff parameter allows you to specify a bootstrap confidence threshold for your taxonomy. The default is 0.\n"; + helpString += "The cutoff parameter allows you to specify a bootstrap confidence threshold for your taxonomy. The default is 80.\n"; helpString += "The probs parameter shuts off the bootstrapping results for the wang and zap method. The default is true, meaning you want the bootstrapping to be shown.\n"; helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The iters parameter allows you to specify how many iterations to do when calculating the bootstrap confidence score for your taxonomy with the wang method. The default is 100.\n"; @@ -552,7 +552,7 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option) { temp = validParameter.validFile(parameters, "numwanted", false); if (temp == "not found"){ temp = "10"; } m->mothurConvert(temp, numWanted); - temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found"){ temp = "0"; } + temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found"){ temp = "80"; } m->mothurConvert(temp, cutoff); temp = validParameter.validFile(parameters, "probs", false); if (temp == "not found"){ temp = "true"; } From d49285a8d9a9b55a831fd2a16ec407289bb2fb5d Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 20 Jan 2016 13:09:56 -0500 Subject: [PATCH 087/135] Fixed bug that allowed file mismatch in cluster.split Count and Name files were allowed to include names not in fasta file. This occurred if user failed to remove chimeras or contaminants by leaving the name or count file off of the remove.seqs or remove.lineage commands. Not removing the chimeras from the count or name file allows them to be added to the list file because mothur creates the "unique" list from those names. This fix is designed to make it harder for people to make clustering mistakes that could seriously effect their results because it 3am and they forgot to include a file on remove.seqs and ignored a few the error messages along the way. We build the "unique" list based on the count or names file to accommodate the sparse distance matrix where sequences may be present in the names or count file, but absent from the distance matrix because their distances are above the cutoff. #190 --- source/read/splitmatrix.cpp | 119 +++++++++++++++++++++++++++++++++++++++++--- source/read/splitmatrix.h | 3 +- 2 files changed, 115 insertions(+), 7 deletions(-) diff --git a/source/read/splitmatrix.cpp b/source/read/splitmatrix.cpp index 356ee749..9723d9bc 100644 --- a/source/read/splitmatrix.cpp +++ b/source/read/splitmatrix.cpp @@ -223,7 +223,7 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG tempDistFiles.push_back(tempDistFile); } - splitNames(seqGroup, numGroups, tempDistFiles); + splitNamesTax(seqGroup, numGroups, tempDistFiles); if (m->control_pressed) { for (int i = 0; i < dists.size(); i++) { m->mothurRemove((dists[i].begin()->first)); m->mothurRemove((dists[i].begin()->second)); } dists.clear(); } @@ -309,7 +309,7 @@ int SplitMatrix::splitDistanceFileByTax(map& seqGroup, int numGroup } } - splitNames(seqGroup, numGroups, tempDistFiles); + splitNamesDist(seqGroup, numGroups, tempDistFiles); if (m->control_pressed) { for (int i = 0; i < dists.size(); i++) { @@ -519,7 +519,7 @@ int SplitMatrix::splitDistanceLarge(){ } } - splitNames(seqGroup, numGroups, tempDistFiles); + splitNamesDist(seqGroup, numGroups, tempDistFiles); return 0; } @@ -529,7 +529,7 @@ int SplitMatrix::splitDistanceLarge(){ } } //******************************************************************************************************************** -int SplitMatrix::splitNames(map& seqGroup, int numGroups, vector& tempDistFiles){ +int SplitMatrix::splitNamesDist(map& seqGroup, int numGroups, vector& tempDistFiles){ try { ofstream outFile; map::iterator it; @@ -631,11 +631,118 @@ int SplitMatrix::splitNames(map& seqGroup, int numGroups, vectorerrorOut(e, "SplitMatrix", "splitNames"); + m->errorOut(e, "SplitMatrix", "splitNamesDist"); exit(1); } } //******************************************************************************************************************** +int SplitMatrix::splitNamesTax(map& seqGroup, int numGroups, vector& tempDistFiles){ + try { + ofstream outFile; + map::iterator it; + + string inputFile = namefile; + if (countfile != "") { inputFile = countfile; } + + for(int i=0;imothurRemove((inputFile + "." + toString(i) + ".temp")); } + + singleton = inputFile + ".extra.temp"; + ofstream remainingNames; + m->openOutputFile(singleton, remainingNames); + + bool wroteExtra = false; + string errorMessage = "name"; + + ifstream bigNameFile; + m->openInputFile(inputFile, bigNameFile); + + //grab header line + string headers = ""; + if (countfile != "") { errorMessage = "count"; headers = m->getline(bigNameFile); m->gobble(bigNameFile); } + + string name, nameList; + while(!bigNameFile.eof()){ + bigNameFile >> name >> nameList; + m->getline(bigNameFile); m->gobble(bigNameFile); //extra getline is for rest of countfile line if groups are given. + + //did this sequence get assigned a group + it = seqGroup.find(name); + + if (it != seqGroup.end()) { + m->openOutputFileAppend((inputFile + "." + toString(it->second) + ".temp"), outFile); + outFile << name << '\t' << nameList << endl; + outFile.close(); + }else{ + m->mothurOut("[ERROR]: " + name + " is not assigned to a group. This indicates a file mismatch likely caused by forgetting to include the " + errorMessage + " file on a remove.seqs or remove.lineage command. Please correct.\n"); m->control_pressed = true; + } + } + bigNameFile.close(); + + for(int i=0;igobble(fileHandle); + if (!fileHandle.eof()) { //check + map temp; + if (countfile != "") { + //add header + ofstream out; + string newtempNameFile = tempNameFile + "2"; + m->openOutputFile(newtempNameFile, out); + out << "Representative_Sequence\ttotal" << endl; + out.close(); + m->appendFiles(tempNameFile, newtempNameFile); + m->mothurRemove(tempNameFile); + m->renameFile(newtempNameFile, tempNameFile); + } + temp[tempDistFile] = tempNameFile; + dists.push_back(temp); + }else{ + ifstream in; + m->openInputFile(tempNameFile, in); + + while(!in.eof()) { + in >> name >> nameList; m->gobble(in); + wroteExtra = true; + remainingNames << name << '\t' << nameList << endl; + } + in.close(); + m->mothurRemove(tempNameFile); + } + } + fileHandle.close(); + } + + remainingNames.close(); + + if (!wroteExtra) { + m->mothurRemove(singleton); + singleton = "none"; + }else if (countfile != "") { + //add header + ofstream out; + string newtempNameFile = singleton + "2"; + m->openOutputFile(newtempNameFile, out); + out << "Representative_Sequence\ttotal" << endl; + out.close(); + m->appendFiles(singleton, newtempNameFile); + m->mothurRemove(singleton); + m->renameFile(newtempNameFile, singleton); + } + + return 0; + } + catch(exception& e) { + m->errorOut(e, "SplitMatrix", "splitNamesTax"); + exit(1); + } +} +//******************************************************************************************************************** int SplitMatrix::splitDistanceRAM(){ try { vector > groups; @@ -751,7 +858,7 @@ int SplitMatrix::splitDistanceRAM(){ } } - splitNames(seqGroup, numGroups, tempDistFiles); + splitNamesDist(seqGroup, numGroups, tempDistFiles); return 0; } diff --git a/source/read/splitmatrix.h b/source/read/splitmatrix.h index 7b468e99..2cee3f30 100644 --- a/source/read/splitmatrix.h +++ b/source/read/splitmatrix.h @@ -40,7 +40,8 @@ class SplitMatrix { int splitClassify(); int splitDistanceLarge(); int splitDistanceRAM(); - int splitNames(map& groups, int, vector&); + int splitNamesDist(map& groups, int, vector&); + int splitNamesTax(map& groups, int, vector&); int splitDistanceFileByTax(map&, int); int createDistanceFilesFromTax(map&, int); }; From ca5429c8dc8b46f1aab9e1d90361ca0d4072c09d Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 20 Jan 2016 16:08:56 -0500 Subject: [PATCH 088/135] Removes limit on number of open files. vector limits was causing bug with some datasets to hit OS open file limit. Remove all vector from source. #180 --- source/commands/classifyotucommand.cpp | 35 +++++++++++++++------------------- 1 file changed, 15 insertions(+), 20 deletions(-) diff --git a/source/commands/classifyotucommand.cpp b/source/commands/classifyotucommand.cpp index 8e12ee2d..a041e8a2 100644 --- a/source/commands/classifyotucommand.cpp +++ b/source/commands/classifyotucommand.cpp @@ -444,7 +444,7 @@ vector ClassifyOtuCommand::findConsensusTaxonomy(vector names, i it = taxMap.find(names[i]); if (it == taxMap.end()) { //this name is not in taxonomy file, skip it - m->mothurOut(names[i] + " is not in your taxonomy file. I will not include it in the consensus."); m->mothurOutEndLine(); + m->mothurOut("[WARNING]: " + names[i] + " is not in your taxonomy file. I will not include it in the consensus."); m->mothurOutEndLine(); }else{ if (countfile != "") { int numDups = ct->getNumSeqs(names[i]); @@ -565,27 +565,20 @@ int ClassifyOtuCommand::process(ListVector* processList) { else { taxaSum = new PhyloSummary(groupMap,false); } } - vector outSums; - vector outs; + vector outs; vector taxaSums; map groupIndex; if (persample) { for (int i = 0; i < groups.size(); i++) { groupIndex[groups[i]] = i; - ofstream* temp = new ofstream(); variables["[distance]"] = processList->getLabel() + "." + groups[i]; string outputFile = getOutputFileName("constaxonomy", variables); - m->openOutputFile(outputFile, *temp); - (*temp) << "OTU\tSize\tTaxonomy" << endl; - outs.push_back(temp); + ofstream temp; + m->openOutputFile(outputFile, temp); + outs.push_back(outputFile); + temp << "OTU\tSize\tTaxonomy" << endl; outputNames.push_back(outputFile); outputTypes["constaxonomy"].push_back(outputFile); - ofstream* tempSum = new ofstream(); - string outputSumFile = getOutputFileName("taxsummary", variables); - m->openOutputFile(outputSumFile, *tempSum); - outSums.push_back(tempSum); - outputNames.push_back(outputSumFile); outputTypes["taxsummary"].push_back(outputSumFile); - PhyloSummary* taxaSumt; if (countfile != "") { if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, ct, false); } @@ -689,8 +682,9 @@ int ClassifyOtuCommand::process(ListVector* processList) { if (m->control_pressed) { break; } - - (*outs[groupIndex[itParsed->first]]) << binLabels[i] << '\t' << size << '\t' << conTax << endl; + ofstream out; m->openOutputFileAppend(outs[groupIndex[itParsed->first]], out); + out << binLabels[i] << '\t' << size << '\t' << conTax << endl; + out.close(); string noConfidenceConTax = conTax; m->removeConfidences(noConfidenceConTax); @@ -719,11 +713,12 @@ int ClassifyOtuCommand::process(ListVector* processList) { if (persample) { for (int i = 0; i < groups.size(); i++) { - (*outs[i]).close(); - taxaSums[i]->print(*outSums[i]); - (*outSums[i]).close(); - delete outs[i]; - delete outSums[i]; + ofstream outSums; + string outputSumFile = getOutputFileName("taxsummary", variables); + m->openOutputFile(outputSumFile, outSums); + outputNames.push_back(outputSumFile); outputTypes["taxsummary"].push_back(outputSumFile); + taxaSums[i]->print(outSums); + outSums.close(); delete taxaSums[i]; } } From 0a8b9ddaa39ac10358a61ad7c86cd29b9cb92e8a Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 20 Jan 2016 16:10:05 -0500 Subject: [PATCH 089/135] Adds memory available and usage to get.current --- source/commands/getcurrentcommand.cpp | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/source/commands/getcurrentcommand.cpp b/source/commands/getcurrentcommand.cpp index d221e835..f9f33904 100644 --- a/source/commands/getcurrentcommand.cpp +++ b/source/commands/getcurrentcommand.cpp @@ -159,6 +159,10 @@ int GetCurrentCommand::execute(){ } } + unsigned long long ramUsed, total; + ramUsed = m->getRAMUsed(); total = m->getTotalRAM(); + m->mothurOut("\nCurrent RAM usage: " + toString(ramUsed/(double)GIG) + " Gigabytes. Total Ram: " + toString(total/(double)GIG) + " Gigabytes.\n"); + if (m->hasCurrentFiles()) { m->mothurOutEndLine(); m->mothurOut("Current files saved by mothur:"); m->mothurOutEndLine(); m->printCurrentFiles(); From aec0815415352a9c5fd88b1077f57c170e7f21e8 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 20 Jan 2016 16:10:44 -0500 Subject: [PATCH 090/135] Adds warning tracking and memory calculation to mothurOut --- source/mothur.h | 3 +- source/mothurout.cpp | 184 +++++++++++++++++++++++++++------------------------ source/mothurout.h | 7 +- 3 files changed, 106 insertions(+), 88 deletions(-) diff --git a/source/mothur.h b/source/mothur.h index e033f492..4f9f90c4 100644 --- a/source/mothur.h +++ b/source/mothur.h @@ -63,6 +63,7 @@ #include #include #include + #include #include #ifdef USE_READLINE @@ -88,7 +89,7 @@ using namespace std; #define log2(x) (log10(x)/log10(2)) #define isnan(x) ((x) != (x)) #define isinf(x) (fabs(x) == std::numeric_limits::infinity()) - +#define GIG 1073741824 typedef unsigned long ull; typedef unsigned short intDist; diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 8b492963..1e3b49a7 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -318,6 +318,25 @@ void MothurOut::closeLog() { logger() << "************************************************************\n"; logger() << "************************************************************\n"; } + + if (numWarnings != 0) { + out << "\n\n<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + out << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + out << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + out << "Detected " + toString(numWarnings) + " [WARNING] messages, please review.\n"; + out << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + out << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + out << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + + logger() << "\n\n<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + logger() << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + logger() << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + logger() << "Detected " + toString(numWarnings) + " [WARNING] messages, please review.\n"; + logger() << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + logger() << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + logger() << "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<^>>>>>>>>>>>>>>>>>>>>>>>>>>>>>\n"; + } + out.close(); } catch(exception& e) { @@ -342,6 +361,9 @@ void MothurOut::mothurOut(string output) { try { if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (output.find("[WARNING]") != string::npos) { numWarnings++; } + + if (!quietMode) { out << output; logger() << output; @@ -364,6 +386,8 @@ void MothurOut::mothurOutJustToScreen(string output) { try { if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (output.find("[WARNING]") != string::npos) { numWarnings++; } + if (!quietMode) { logger() << output; }else { @@ -396,6 +420,8 @@ void MothurOut::mothurOut(string output, ofstream& outputFile) { try { if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (output.find("[WARNING]") != string::npos) { numWarnings++; } + if (!quietMode) { out << output; outputFile << output; @@ -434,6 +460,8 @@ void MothurOut::mothurOutJustToLog(string output) { try { if (output.find("[ERROR]") != string::npos) { numErrors++; } + if (output.find("[WARNING]") != string::npos) { numWarnings++; } + if (!quietMode) { out << output; }else { @@ -451,9 +479,6 @@ void MothurOut::mothurOutJustToLog(string output) { } /*********************************************************************************************/ void MothurOut::errorOut(exception& e, string object, string function) { - //double vm, rss; - //mem_usage(vm, rss); - numErrors++; string errorType = toString(e.what()); @@ -462,6 +487,10 @@ void MothurOut::errorOut(exception& e, string object, string function) { mothurOut("[ERROR]: "); mothurOut(errorType); + unsigned long long ramUsed, total; + ramUsed = getRAMUsed(); total = getTotalRAM(); + mothurOut("RAM used: " + toString(ramUsed/(double)GIG) + "Gigabytes . Total Ram: " + toString(total/(double)GIG) + "Gigabytes.\n\n"); + if (pos == string::npos) { //not bad_alloc mothurOut(" has occurred in the " + object + " class function " + function + ". Please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry."); mothurOutEndLine(); @@ -476,90 +505,75 @@ void MothurOut::errorOut(exception& e, string object, string function) { } } /*********************************************************************************************/ -//The following was originally from http://stackoverflow.com/questions/669438/how-to-get-memory-usage-at-run-time-in-c -// process_mem_usage(double &, double &) - takes two doubles by reference, -// attempts to read the system-dependent data for a process' virtual memory -// size and resident set size, and return the results in KB. -// -// On failure, returns 0.0, 0.0 -int MothurOut::mem_usage(double& vm_usage, double& resident_set) { - #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - vm_usage = 0.0; - resident_set = 0.0; - - // 'file' stat seems to give the most reliable results - // - ifstream stat_stream("/proc/self/stat",ios_base::in); - - // dummy vars for leading entries in stat that we don't care about - // - string pid, comm, state, ppid, pgrp, session, tty_nr; - string tpgid, flags, minflt, cminflt, majflt, cmajflt; - string utime, stime, cutime, cstime, priority, nice; - string O, itrealvalue, starttime; - - // the two fields we want - // - unsigned long vsize; - long rss; - - stat_stream >> pid >> comm >> state >> ppid >> pgrp >> session >> tty_nr - >> tpgid >> flags >> minflt >> cminflt >> majflt >> cmajflt - >> utime >> stime >> cutime >> cstime >> priority >> nice - >> O >> itrealvalue >> starttime >> vsize >> rss; // don't care about the rest - - long page_size_kb = sysconf(_SC_PAGE_SIZE) / 1024; // in case x86-64 is configured to use 2MB pages - vm_usage = vsize / 1024.0; - resident_set = rss * page_size_kb; - - mothurOut("Memory Usage: vm = " + toString(vm_usage) + " rss = " + toString(resident_set) + "\n"); - return 0; - - #else -/* //windows memory usage - // Get the list of process identifiers. - DWORD aProcesses[1024], cbNeeded, cProcesses; - - if ( !EnumProcesses( aProcesses, sizeof(aProcesses), &cbNeeded ) ){ return 1; } - - // Calculate how many process identifiers were returned. - cProcesses = cbNeeded / sizeof(DWORD); - - // Print the memory usage for each process - for (int i = 0; i < cProcesses; i++ ) { - DWORD processID = aProcesses[i]; - - PROCESS_MEMORY_COUNTERS pmc; - - HANDLE hProcess = OpenProcess((PROCESS_QUERY_INFORMATION | PROCESS_VM_READ), FALSE, processID); - - // Print the process identifier. - printf( "\nProcess ID: %u\n", processID); - - if (NULL != hProcess) { - - if ( GetProcessMemoryInfo( hProcess, &pmc, sizeof(pmc)) ) { - printf( "\tPageFaultCount: 0x%08X\n", pmc.PageFaultCount ); - printf( "\tPeakWorkingSetSize: 0x%08X\n", pmc.PeakWorkingSetSize ); - printf( "\tWorkingSetSize: 0x%08X\n", pmc.WorkingSetSize ); - printf( "\tQuotaPeakPagedPoolUsage: 0x%08X\n", pmc.QuotaPeakPagedPoolUsage ); - printf( "\tQuotaPagedPoolUsage: 0x%08X\n", pmc.QuotaPagedPoolUsage ); - printf( "\tQuotaPeakNonPagedPoolUsage: 0x%08X\n", pmc.QuotaPeakNonPagedPoolUsage ); - printf( "\tQuotaNonPagedPoolUsage: 0x%08X\n", pmc.QuotaNonPagedPoolUsage ); - printf( "\tPagefileUsage: 0x%08X\n", pmc.PagefileUsage ); - printf( "\tPeakPagefileUsage: 0x%08X\n", pmc.PeakPagefileUsage ); - } - CloseHandle(hProcess); - } - } -*/ - return 0; - - #endif +unsigned long long MothurOut::getRAMUsed() { + try { + +#if defined (__APPLE__) || (__MACH__) + /* Mac: ru_maxrss gives the size in bytes */ + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + + return r_usage.ru_maxrss; +#elif (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* Linux: ru_maxrss gives the size in kilobytes */ + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + return r_usage.ru_maxrss * 1024; +#else + PROCESS_MEMORY_COUNTERS info; + GetProcessMemoryInfo( GetCurrentProcess( ), &info, sizeof(info) ); + return (size_t)info.PeakWorkingSetSize; +#endif + } + catch(exception& e) { + errorOut(e, "MothurOut", "getMemoryUsed"); + exit(1); + } } +/*********************************************************************************************/ - +unsigned long long MothurOut::getTotalRAM() { + try { + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + long pages = get_phys_pages(); + long page_size = sysconf(_SC_PAGE_SIZE); + if ((page_size == -1) || (pages == -1)) + mothurOut("[WARNING]: Cannot determine amount of RAM"); + return pages * page_size; +#elif defined (_WIN32) + MEMORYSTATUSEX status; + status.dwLength = sizeof(status); + GlobalMemoryStatusEx(&status); + return (size_t)status.ullTotalPhys; +#else + struct sysinfo si; + if (sysinfo(&si)) + mothurOut("[WARNING]: Cannot determine amount of RAM"); + return si.totalram * si.mem_unit; + +#endif + } + catch(exception& e) { + errorOut(e, "MothurOut", "getTotalRAM"); + exit(1); + } +} +/***********************************************************************/ +unsigned long MothurOut::get_phys_pages () { + unsigned long phys_pages = 0; +#if (_SC_PAGE_SIZE) + uint64_t mem; + size_t len = sizeof(mem); + sysctlbyname("hw.memsize", &mem, &len, NULL, 0); + phys_pages = mem/sysconf(_SC_PAGE_SIZE); +#elif (_SC_PHYS_PAGES) + phys_pages = sysconf(_SC_PHYS_PAGES); +#else + mothurOut("[WARNING]: Cannot determine number of physical pages\n"); +#endif + return phys_pages; +} /***********************************************************************/ int MothurOut::openOutputFileAppend(string fileName, ofstream& fileHandle){ try { diff --git a/source/mothurout.h b/source/mothurout.h index 80d2dca0..48d190be 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -166,7 +166,9 @@ class MothurOut { string getSimpleLabel(string); string findEdianness(); string mothurGetpid(int); - + unsigned long long getRAMUsed(); + unsigned long long getTotalRAM(); + unsigned long get_phys_pages(); //string manipulation void splitAtEquals(string&, string&); @@ -318,6 +320,7 @@ class MothurOut { changedSeqNames = false; modifyNames = true; numErrors = 0; + numWarnings = 0; } ~MothurOut(); @@ -331,7 +334,7 @@ class MothurOut { vector Groups; vector namesOfGroups; ofstream out; - int numErrors; + int numErrors, numWarnings; int mem_usage(double&, double&); From 69166f18955729e5c38be8f60b11f968dc402373 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 20 Jan 2016 17:53:03 -0500 Subject: [PATCH 091/135] Removing ofstream* --- source/commands/chimerauchimecommand.cpp | 22 +++------ source/commands/collectcommand.cpp | 32 +++++------- source/commands/parselistscommand.cpp | 52 ++++++++------------ source/commands/rarefactcommand.cpp | 83 +++++++++++++++----------------- source/commands/summarycommand.cpp | 76 ++++++++++++++--------------- 5 files changed, 114 insertions(+), 151 deletions(-) diff --git a/source/commands/chimerauchimecommand.cpp b/source/commands/chimerauchimecommand.cpp index 317dbb73..cd3a33de 100644 --- a/source/commands/chimerauchimecommand.cpp +++ b/source/commands/chimerauchimecommand.cpp @@ -1688,15 +1688,13 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename //divide file int count = 0; int spot = 0; - map filehandles; - map::iterator it3; + map files; + map::iterator it3; - ofstream* temp; for (int i = 0; i < processors; i++) { - temp = new ofstream; - filehandles[i] = temp; - m->openOutputFile(filename+toString(i)+".temp", *(temp)); - files.push_back(filename+toString(i)+".temp"); + ofstream temp; + files[i] = filename+toString(i)+".temp"; + m->openOutputFile(filename+toString(i)+".temp", temp); } ifstream in; @@ -1709,19 +1707,15 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename Sequence tempSeq(in); m->gobble(in); if (tempSeq.getName() != "") { - tempSeq.printSequence(*(filehandles[spot])); + ofstream temp; + m->openOutputFileAppend(files[spot], temp); + tempSeq.printSequence(temp); temp.close(); spot++; count++; if (spot == processors) { spot = 0; } } } in.close(); - //delete memory - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(it3->second)).close(); - delete it3->second; - } - //sanity check for number of processors if (count < processors) { processors = count; } diff --git a/source/commands/collectcommand.cpp b/source/commands/collectcommand.cpp index d0355675..5fa5e61a 100644 --- a/source/commands/collectcommand.cpp +++ b/source/commands/collectcommand.cpp @@ -597,8 +597,8 @@ vector CollectCommand::parseSharedFile(string filename) { try { vector filenames; - map filehandles; - map::iterator it3; + map files; + map::iterator it3; input = new InputData(filename, "sharedfile"); vector lookup = input->getSharedRAbundVectors(); @@ -607,35 +607,29 @@ vector CollectCommand::parseSharedFile(string filename) { //clears file before we start to write to it below for (int i=0; imothurRemove((sharedFileRoot + lookup[i]->getGroup() + ".rabund")); - filenames.push_back((sharedFileRoot + lookup[i]->getGroup() + ".rabund")); + ofstream temp; + string group = lookup[i]->getGroup(); + m->openOutputFile((sharedFileRoot + group + ".rabund"), temp); + filenames.push_back((sharedFileRoot + group + ".rabund")); + files[group] = (sharedFileRoot + group + ".rabund"); + groups.push_back(group); } - ofstream* temp; - for (int i=0; igetGroup()] = temp; - groups.push_back(lookup[i]->getGroup()); - } - while(lookup[0] != NULL) { for (int i = 0; i < lookup.size(); i++) { RAbundVector rav = lookup[i]->getRAbundVector(); - m->openOutputFileAppend(sharedFileRoot + lookup[i]->getGroup() + ".rabund", *(filehandles[lookup[i]->getGroup()])); - rav.print(*(filehandles[lookup[i]->getGroup()])); - (*(filehandles[lookup[i]->getGroup()])).close(); + ofstream temp; + string group = lookup[i]->getGroup(); + m->openOutputFileAppend(files[group], temp); + rav.print(temp); + temp.close(); } for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } lookup = input->getSharedRAbundVectors(); } - //free memory - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - delete it3->second; - } - delete input; return filenames; diff --git a/source/commands/parselistscommand.cpp b/source/commands/parselistscommand.cpp index e6ff1235..cbd50099 100644 --- a/source/commands/parselistscommand.cpp +++ b/source/commands/parselistscommand.cpp @@ -324,8 +324,8 @@ int ParseListCommand::execute(){ /**********************************************************************************************************************/ int ParseListCommand::parse(ListVector* thisList) { try { - map filehandles; - map::iterator it3; + map files; + map::iterator it3; //set fileroot map variables; @@ -333,32 +333,25 @@ int ParseListCommand::parse(ListVector* thisList) { variables["[distance]"] = thisList->getLabel(); //fill filehandles with neccessary ofstreams - ofstream* temp; vector gGroups; if (groupfile != "") { gGroups = groupMap->getNamesOfGroups(); } else { gGroups = ct.getNamesOfGroups(); } + map groupVector; + map groupLabels; + map::iterator itGroup; + map groupNumBins; + for (int i=0; iopenOutputFile(filename, *temp); + ofstream temp; + m->openOutputFile(filename, temp); + files[gGroups[i]] = filename; outputNames.push_back(filename); outputTypes["list"].push_back(filename); - } - - - map groupVector; - map groupLabels; - map::iterator itGroup; - map groupNumBins; - - //print label - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - groupNumBins[it3->first] = 0; - groupVector[it3->first] = ""; - groupLabels[it3->first] = "label\tnumOtus"; + groupNumBins[gGroups[i]] = 0; + groupVector[gGroups[i]] = ""; + groupLabels[gGroups[i]] = "label\tnumOtus"; } vector binLabels = thisList->getLabels(); @@ -409,21 +402,14 @@ int ParseListCommand::parse(ListVector* thisList) { } } - - if (m->control_pressed) { - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])).close(); - delete it3->second; - } - return 0; - } //end list vector - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])) << groupLabels[it3->first] << endl; - (*(filehandles[it3->first])) << thisList->getLabel() << '\t' << groupNumBins[it3->first] << groupVector[it3->first] << endl; // label numBins listvector for that group - (*(filehandles[it3->first])).close(); - delete it3->second; + for (it3 = files.begin(); it3 != files.end(); it3++) { + ofstream out; + m->openOutputFileAppend(files[it3->second], out); + out << groupLabels[it3->first] << endl; + out << thisList->getLabel() << '\t' << groupNumBins[it3->first] << groupVector[it3->first] << endl; // label numBins listvector for that group + out.close(); } return 0; diff --git a/source/commands/rarefactcommand.cpp b/source/commands/rarefactcommand.cpp index 62d1ae49..f14f934b 100644 --- a/source/commands/rarefactcommand.cpp +++ b/source/commands/rarefactcommand.cpp @@ -683,52 +683,47 @@ vector RareFactCommand::createGroupFile(vector& outputNames, map //********************************************************************************************************************** vector RareFactCommand::parseSharedFile(string filename, map >& label2Ends) { try { - vector filenames; - - map filehandles; - map::iterator it3; - - input = new InputData(filename, "sharedfile"); - vector lookup = input->getSharedRAbundVectors(); - - string sharedFileRoot = m->getRootName(filename); - - //clears file before we start to write to it below - for (int i=0; imothurRemove((sharedFileRoot + lookup[i]->getGroup() + ".rabund")); - filenames.push_back((sharedFileRoot + lookup[i]->getGroup() + ".rabund")); - } - - ofstream* temp; - for (int i=0; igetGroup()] = temp; - groups.push_back(lookup[i]->getGroup()); - } - - while(lookup[0] != NULL) { - - for (int i = 0; i < lookup.size(); i++) { - RAbundVector rav = lookup[i]->getRAbundVector(); - m->openOutputFileAppend(sharedFileRoot + lookup[i]->getGroup() + ".rabund", *(filehandles[lookup[i]->getGroup()])); - rav.print(*(filehandles[lookup[i]->getGroup()])); - (*(filehandles[lookup[i]->getGroup()])).close(); + vector filenames; + + map files; + map::iterator it3; + + input = new InputData(filename, "sharedfile"); + vector lookup = input->getSharedRAbundVectors(); + + string sharedFileRoot = m->getRootName(filename); + + //clears file before we start to write to it below + for (int i=0; igetGroup(); + m->openOutputFile((sharedFileRoot + group + ".rabund"), temp); + filenames.push_back((sharedFileRoot + group + ".rabund")); + files[group] = (sharedFileRoot + group + ".rabund"); + groups.push_back(group); + } + + while(lookup[0] != NULL) { + + for (int i = 0; i < lookup.size(); i++) { + RAbundVector rav = lookup[i]->getRAbundVector(); + ofstream temp; + string group = lookup[i]->getGroup(); + m->openOutputFileAppend(files[group], temp); + rav.print(temp); + temp.close(); label2Ends[lookup[i]->getLabel()].insert(rav.getNumSeqs()); - } - - for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } - lookup = input->getSharedRAbundVectors(); - } - - //free memory - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - delete it3->second; - } - - delete input; - m->clearGroups(); + } + + for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } + lookup = input->getSharedRAbundVectors(); + } + + delete input; + m->clearGroups(); + + return filenames; - return filenames; } catch(exception& e) { m->errorOut(e, "RareFactCommand", "parseSharedFile"); diff --git a/source/commands/summarycommand.cpp b/source/commands/summarycommand.cpp index ba7760d3..35f3925c 100644 --- a/source/commands/summarycommand.cpp +++ b/source/commands/summarycommand.cpp @@ -636,15 +636,15 @@ int SummaryCommand::process(SAbundVector*& sabund, ofstream& outputFileHandle, o //********************************************************************************************************************** vector SummaryCommand::parseSharedFile(string filename) { try { - vector filenames; - - map filehandles; - map::iterator it3; - - input = new InputData(filename, "sharedfile"); - vector lookup = input->getSharedRAbundVectors(); - - string sharedFileRoot = m->getRootName(filename); + vector filenames; + + map files; + map::iterator it3; + + input = new InputData(filename, "sharedfile"); + vector lookup = input->getSharedRAbundVectors(); + + string sharedFileRoot = m->getRootName(filename); /******************************************************/ if (subsample) { @@ -679,39 +679,33 @@ vector SummaryCommand::parseSharedFile(string filename) { /******************************************************/ //clears file before we start to write to it below - for (int i=0; imothurRemove((sharedFileRoot + lookup[i]->getGroup() + ".rabund")); - filenames.push_back((sharedFileRoot + lookup[i]->getGroup() + ".rabund")); - } + for (int i=0; igetGroup(); + m->openOutputFile((sharedFileRoot + group + ".rabund"), temp); + filenames.push_back((sharedFileRoot + group + ".rabund")); + files[group] = (sharedFileRoot + group + ".rabund"); + groups.push_back(group); + } - ofstream* temp; - for (int i=0; igetGroup()] = temp; - groups.push_back(lookup[i]->getGroup()); - } - - while(lookup[0] != NULL) { - - for (int i = 0; i < lookup.size(); i++) { - RAbundVector rav = lookup[i]->getRAbundVector(); - m->openOutputFileAppend(sharedFileRoot + lookup[i]->getGroup() + ".rabund", *(filehandles[lookup[i]->getGroup()])); - rav.print(*(filehandles[lookup[i]->getGroup()])); - (*(filehandles[lookup[i]->getGroup()])).close(); - } - - for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } - lookup = input->getSharedRAbundVectors(); - } - - //free memory - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - delete it3->second; - } - - delete input; - - return filenames; + while(lookup[0] != NULL) { + + for (int i = 0; i < lookup.size(); i++) { + RAbundVector rav = lookup[i]->getRAbundVector(); + ofstream temp; + string group = lookup[i]->getGroup(); + m->openOutputFileAppend(files[group], temp); + rav.print(temp); + temp.close(); + } + + for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } + lookup = input->getSharedRAbundVectors(); + } + + delete input; + + return filenames; } catch(exception& e) { m->errorOut(e, "SummaryCommand", "parseSharedFile"); From 2e7de5f6256a7ca40d0d217082d2d3cb528521e3 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 21 Jan 2016 13:03:12 -0500 Subject: [PATCH 092/135] Removes ofstream* to eliminate open file limit --- source/commands/getoturepcommand.cpp | 42 +++++++++++----------------------- source/commands/splitgroupscommand.cpp | 32 ++++++++++++-------------- 2 files changed, 27 insertions(+), 47 deletions(-) diff --git a/source/commands/getoturepcommand.cpp b/source/commands/getoturepcommand.cpp index 2fd5657c..5ea6f12b 100644 --- a/source/commands/getoturepcommand.cpp +++ b/source/commands/getoturepcommand.cpp @@ -942,7 +942,7 @@ int GetOTURepCommand::process(ListVector* processList) { ofstream newNamesOutput; string outputNamesFile; - map filehandles; + map files; //group -> filenameAW map variables; variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(listfile)); @@ -960,12 +960,9 @@ int GetOTURepCommand::process(ListVector* processList) { m->openOutputFile(outputNamesFile, newNamesOutput); newNamesOutput << "noGroup" << endl; }else{ //you want to use groups - ofstream* temp; for (int i=0; igetLabel(); variables["[group]"] = Groups[i]; - filehandles[Groups[i]] = temp; outputNamesFile = outputDir + m->getRootName(m->getSimpleName(listfile)) + processList->getLabel() + "." + Groups[i] + "."; if (countfile == "") { outputNamesFile = getOutputFileName("name", variables); @@ -974,9 +971,10 @@ int GetOTURepCommand::process(ListVector* processList) { outputNamesFile = getOutputFileName("count", variables); outputNames.push_back(outputNamesFile); outputTypes["count"].push_back(outputNamesFile); } - - m->openOutputFile(outputNamesFile, *(temp)); - *(temp) << Groups[i] << endl; + files[Groups[i]] = outputNamesFile; + ofstream temp; + m->openOutputFile(outputNamesFile, temp); + temp << Groups[i] << endl; temp.close(); outputNameFiles[outputNamesFile] = processList->getLabel() + "." + Groups[i]; } } @@ -984,18 +982,8 @@ int GetOTURepCommand::process(ListVector* processList) { //for each bin in the list vector vector binLabels = processList->getLabels(); for (int i = 0; i < processList->size(); i++) { - if (m->control_pressed) { - out.close(); - if (Groups.size() == 0) { //you don't want to use groups - newNamesOutput.close(); - }else{ - for (int j=0; jcontrol_pressed) { out.close(); if (Groups.size() == 0) { newNamesOutput.close(); } return 0; } string temp = processList->get(i); vector namesInBin; @@ -1046,7 +1034,9 @@ int GetOTURepCommand::process(ListVector* processList) { nameRep = findRep(NamesInGroup[Groups[j]], Groups[j]); //output group rep and other members of this group - (*(filehandles[Groups[j]])) << binLabels[i] << '\t' << nameRep << '\t'; + ofstream outGroup; + m->openOutputFileAppend(files[Groups[j]], outGroup); + outGroup << binLabels[i] << '\t' << nameRep << '\t'; //put rep at first position in names line string outputString = nameRep + ","; @@ -1060,20 +1050,14 @@ int GetOTURepCommand::process(ListVector* processList) { if (outputString[outputString.length()-1] == ',') { //rip off comma outputString = outputString.substr(0, outputString.length()-1); } - (*(filehandles[Groups[j]])) << outputString << endl; + outGroup << outputString << endl; outGroup.close(); } } } } - if (Groups.size() == 0) { //you don't want to use groups - newNamesOutput.close(); - }else{ - for (int i=0; i ffiles; - map cfiles; - ofstream* temp; + map ffiles; //group -> filename + map cfiles; //group -> filename for (int i=0; i variables; variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(fastafile)); variables["[group]"] = Groups[i]; string newFasta = getOutputFileName("fasta",variables); outputNames.push_back(newFasta); outputTypes["fasta"].push_back(newFasta); - m->openOutputFile(newFasta, (*temp)); - temp = new ofstream; - cfiles[Groups[i]] = temp; + ffiles[Groups[i]] = newFasta; + m->openOutputFile(newFasta, ftemp); ftemp.close(); + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(countfile)); string newCount = getOutputFileName("count",variables); - m->openOutputFile(newCount, (*temp)); outputNames.push_back(newCount); outputTypes["count"].push_back(newCount); - (*temp) << "Representative_Sequence\ttotal\t" << Groups[i] << endl; + cfiles[Groups[i]] = newCount; + m->openOutputFile(newCount, ctemp); + ctemp << "Representative_Sequence\ttotal\t" << Groups[i] << endl; ctemp.close(); } ifstream in; @@ -362,21 +361,18 @@ int SplitGroupCommand::runCount(){ vector thisSeqsGroups = ct.getGroups(seq.getName()); for (int i = 0; i < thisSeqsGroups.size(); i++) { if (m->inUsersGroups(thisSeqsGroups[i], Groups)) { //if this sequence belongs to a group we want them print - seq.printSequence(*(ffiles[thisSeqsGroups[i]])); + ofstream outf, outc; + m->openOutputFileAppend(ffiles[thisSeqsGroups[i]], outf); + seq.printSequence(outf); outf.close(); int numSeqs = ct.getGroupCount(seq.getName(), thisSeqsGroups[i]); - (*(cfiles[thisSeqsGroups[i]])) << seq.getName() << '\t' << numSeqs << '\t' << numSeqs << endl; + m->openOutputFileAppend(cfiles[thisSeqsGroups[i]], outc); + outc << seq.getName() << '\t' << numSeqs << '\t' << numSeqs << endl; outc.close(); } } } } in.close(); - //close and delete ofstreams - for (int i=0; i Date: Thu, 21 Jan 2016 14:36:42 -0500 Subject: [PATCH 093/135] Removes ofstream* to eliminate open file limit. #180 --- source/commands/splitabundcommand.cpp | 171 ++++++++++++++++------------------ 1 file changed, 79 insertions(+), 92 deletions(-) diff --git a/source/commands/splitabundcommand.cpp b/source/commands/splitabundcommand.cpp index eb6a57ff..fa9e87af 100644 --- a/source/commands/splitabundcommand.cpp +++ b/source/commands/splitabundcommand.cpp @@ -489,8 +489,6 @@ int SplitAbundCommand::splitList(ListVector* thisList) { int SplitAbundCommand::writeList(ListVector* thisList, string tag, int numRareBins) { try { - map filehandles; - if (Groups.size() == 0) { int numAbundBins = thisList->getNumBins() - numRareBins; @@ -555,18 +553,12 @@ int SplitAbundCommand::writeList(ListVector* thisList, string tag, int numRareBi }else{ //parse names by abundance and group string fileroot = outputDir + m->getRootName(m->getSimpleName(listfile)); - ofstream* temp; - ofstream* temp2; + //map wroteFile; - map filehandles; - map::iterator it3; + map files; //group -> filename + map::iterator it3; for (int i=0; i variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; @@ -575,8 +567,11 @@ int SplitAbundCommand::writeList(ListVector* thisList, string tag, int numRareBi string rareGroupFileName = getOutputFileName("list",variables); variables["[tag2]"] = "abund"; string abundGroupFileName = getOutputFileName("list",variables); - m->openOutputFile(rareGroupFileName, *(filehandles[Groups[i]+".rare"])); - m->openOutputFile(abundGroupFileName, *(filehandles[Groups[i]+".abund"])); + files[Groups[i]+".rare"] = rareGroupFileName; + files[Groups[i]+".abund"] = abundGroupFileName; + ofstream temp1, temp2; + m->openOutputFile(rareGroupFileName, temp1); temp1.close(); + m->openOutputFile(abundGroupFileName, temp2); temp2.close(); outputNames.push_back(rareGroupFileName); outputTypes["list"].push_back(rareGroupFileName); outputNames.push_back(abundGroupFileName); outputTypes["list"].push_back(abundGroupFileName); } @@ -586,7 +581,7 @@ int SplitAbundCommand::writeList(ListVector* thisList, string tag, int numRareBi map::iterator itGroup; map groupNumBins; - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { + for (it3 = files.begin(); it3 != files.end(); it3++) { groupNumBins[it3->first] = 0; groupVector[it3->first] = ""; groupLabels[it3->first] = "label\tnumOtus"; @@ -648,11 +643,12 @@ int SplitAbundCommand::writeList(ListVector* thisList, string tag, int numRareBi } //end list vector - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])) << groupLabels[it3->first] << endl; - (*(filehandles[it3->first])) << thisList->getLabel() << '\t' << groupNumBins[it3->first] << groupVector[it3->first] << endl; // label numBins listvector for that group - (*(filehandles[it3->first])).close(); - delete it3->second; + for (it3 = files.begin(); it3 != files.end(); it3++) { + ofstream out; + m->openOutputFileAppend(it3->second, out); + out << groupLabels[it3->first] << endl; + out << thisList->getLabel() << '\t' << groupNumBins[it3->first] << groupVector[it3->first] << endl; // label numBins listvector for that group + out.close(); } } @@ -784,8 +780,6 @@ int SplitAbundCommand::createNameMap(ListVector* thisList) { /**********************************************************************************************************************/ int SplitAbundCommand::parseCount(string tag) { //namefile try { - - map filehandles; if (Groups.size() == 0) { map variables; @@ -901,8 +895,6 @@ int SplitAbundCommand::parseCount(string tag) { //namefile int SplitAbundCommand::writeNames() { //namefile try { - map filehandles; - if (Groups.size() == 0) { ofstream aout; ofstream rout; @@ -935,17 +927,10 @@ int SplitAbundCommand::writeNames() { //namefile }else{ //parse names by abundance and group string fileroot = outputDir + m->getRootName(m->getSimpleName(namefile)); - ofstream* temp; - ofstream* temp2; - map filehandles; - map::iterator it3; + map files; //group -> filename + map::iterator it3; for (int i=0; i variables; variables["[filename]"] = fileroot; variables["[tag]"] = "rare"; @@ -953,8 +938,12 @@ int SplitAbundCommand::writeNames() { //namefile string rareGroupFileName = getOutputFileName("name",variables); variables["[tag]"] = "abund"; string abundGroupFileName = getOutputFileName("name",variables); - m->openOutputFile(rareGroupFileName, *(filehandles[Groups[i]+".rare"])); - m->openOutputFile(abundGroupFileName, *(filehandles[Groups[i]+".abund"])); + + ofstream temp1, temp2; + files[Groups[i]+".rare"] = rareGroupFileName; + files[Groups[i]+".abund"] = abundGroupFileName; + m->openOutputFile(rareGroupFileName, temp1); temp1.close(); + m->openOutputFile(abundGroupFileName, temp2); temp2.close(); } for (map::iterator itName = nameMap.begin(); itName != nameMap.end(); itName++) { @@ -984,17 +973,20 @@ int SplitAbundCommand::writeNames() { //namefile } } - for (itout = outputStrings.begin(); itout != outputStrings.end(); itout++) { *(filehandles[itout->first]) << itout->second << endl; } + for (itout = outputStrings.begin(); itout != outputStrings.end(); itout++) { + ofstream out; + m->openOutputFileAppend(files[itout->first], out); + out << itout->second << endl; + out.close(); + } } - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])).close(); + for (it3 = files.begin(); it3 != files.end(); it3++) { map variables; variables["[filename]"] = fileroot; variables["[tag]"] = it3->first; outputNames.push_back(getOutputFileName("name",variables)); outputTypes["name"].push_back(getOutputFileName("name",variables)); - delete it3->second; } } @@ -1011,8 +1003,6 @@ int SplitAbundCommand::writeNames() { //namefile int SplitAbundCommand::writeAccnos(string tag) { try { - map filehandles; - if (Groups.size() == 0) { ofstream aout; ofstream rout; @@ -1042,25 +1032,24 @@ int SplitAbundCommand::writeAccnos(string tag) { }else{ //parse names by abundance and group string fileroot = outputDir + m->getRootName(m->getSimpleName(inputFile)); - ofstream* temp; - ofstream* temp2; - map filehandles; - map::iterator it3; + + map files; + map::iterator it3; for (int i=0; i variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; variables["[tag2]"] = "rare"; variables["[group]"] = Groups[i]; - m->openOutputFile(getOutputFileName("accnos",variables), *(filehandles[Groups[i]+".rare"])); + ofstream temp1, temp2; + string rareAccnosFileName = getOutputFileName("accnos",variables); + m->openOutputFile(rareAccnosFileName, temp1); temp1.close(); variables["[tag2]"] = "abund"; - m->openOutputFile(getOutputFileName("accnos",variables), *(filehandles[Groups[i]+".abund"])); + string abundAccnosFileName = getOutputFileName("accnos",variables); + m->openOutputFile(abundAccnosFileName, temp2); temp2.close(); + files[Groups[i]+".rare"] = rareAccnosFileName; + files[Groups[i]+".abund"] = abundAccnosFileName; } //write rare @@ -1068,7 +1057,9 @@ int SplitAbundCommand::writeAccnos(string tag) { string group = groupMap.getGroup(*itRare); if (m->inUsersGroups(group, Groups)) { //only add if this is in a group we want - *(filehandles[group+".rare"]) << *itRare << endl; + ofstream out; + m->openOutputFileAppend(files[group+".rare"], out); + out << *itRare << endl; out.close(); } } @@ -1077,19 +1068,19 @@ int SplitAbundCommand::writeAccnos(string tag) { string group = groupMap.getGroup(*itAbund); if (m->inUsersGroups(group, Groups)) { //only add if this is in a group we want - *(filehandles[group+".abund"]) << *itAbund << endl; + ofstream out; + m->openOutputFileAppend(files[group+".abund"], out); + out << *itAbund << endl; out.close(); } } //close files - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])).close(); + for (it3 = files.begin(); it3 != files.end(); it3++) { map variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; variables["[tag2]"] = it3->first; outputNames.push_back(getOutputFileName("accnos",variables)); outputTypes["accnos"].push_back(getOutputFileName("accnos",variables)); - delete it3->second; } } @@ -1105,8 +1096,6 @@ int SplitAbundCommand::writeAccnos(string tag) { int SplitAbundCommand::parseGroup(string tag) { //namefile try { - map filehandles; - if (Groups.size() == 0) { ofstream aout; ofstream rout; @@ -1150,25 +1139,25 @@ int SplitAbundCommand::parseGroup(string tag) { //namefile }else{ //parse names by abundance and group string fileroot = outputDir + m->getRootName(m->getSimpleName(groupfile)); - ofstream* temp; - ofstream* temp2; - map filehandles; - map::iterator it3; + + map files; + map::iterator it3; for (int i=0; i variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; variables["[tag2]"] = "rare"; variables["[group]"] = Groups[i]; - m->openOutputFile(getOutputFileName("group",variables), *(filehandles[Groups[i]+".rare"])); + ofstream temp1, temp2; + string rareGroupFile = getOutputFileName("group",variables); + m->openOutputFile(rareGroupFile, temp1); temp1.close(); variables["[tag2]"] = "abund"; - m->openOutputFile(getOutputFileName("group",variables), *(filehandles[Groups[i]+".abund"])); + string abundGroupFile = getOutputFileName("group",variables); + m->openOutputFile(abundGroupFile, temp2); temp2.close(); + files[Groups[i]+".rare"] = rareGroupFile; + files[Groups[i]+".abund"] = abundGroupFile; + } for (map::iterator itName = nameMap.begin(); itName != nameMap.end(); itName++) { @@ -1187,19 +1176,19 @@ int SplitAbundCommand::parseGroup(string tag) { //namefile string group = groupMap.getGroup(names[i]); if (m->inUsersGroups(group, Groups)) { //only add if this is in a group we want - *(filehandles[group+rareAbund]) << names[i] << '\t' << group << endl; + ofstream out; + m->openOutputFileAppend(files[group+rareAbund], out); + out << names[i] << '\t' << group << endl; out.close(); } } } - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])).close(); + for (it3 = files.begin(); it3 != files.end(); it3++) { map variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; variables["[tag2]"] = it3->first; outputNames.push_back(getOutputFileName("group",variables)); outputTypes["group"].push_back(getOutputFileName("group",variables)); - delete it3->second; } } @@ -1214,9 +1203,6 @@ int SplitAbundCommand::parseGroup(string tag) { //namefile /**********************************************************************************************************************/ int SplitAbundCommand::parseFasta(string tag) { //namefile try { - - map filehandles; - if (Groups.size() == 0) { ofstream aout; ofstream rout; @@ -1266,25 +1252,24 @@ int SplitAbundCommand::parseFasta(string tag) { //namefile }else{ //parse names by abundance and group string fileroot = outputDir + m->getRootName(m->getSimpleName(fastafile)); - ofstream* temp; - ofstream* temp2; - map filehandles; - map::iterator it3; + + map files; + map::iterator it3; for (int i=0; i variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; variables["[tag2]"] = "rare"; variables["[group]"] = Groups[i]; - m->openOutputFile(getOutputFileName("fasta",variables), *(filehandles[Groups[i]+".rare"])); + ofstream temp1, temp2; + string rareFastaFile = getOutputFileName("fasta",variables); + m->openOutputFile(rareFastaFile, temp1); temp1.close(); variables["[tag2]"] = "abund"; - m->openOutputFile(getOutputFileName("fasta",variables), *(filehandles[Groups[i]+".abund"])); + string abundFastaFile = getOutputFileName("fasta",variables); + m->openOutputFile(abundFastaFile, temp2); temp2.close(); + files[Groups[i]+".rare"] = rareFastaFile; + files[Groups[i]+".abund"] = abundFastaFile; } //open input file @@ -1317,7 +1302,9 @@ int SplitAbundCommand::parseFasta(string tag) { //namefile string group = groupMap.getGroup(seq.getName()); if (m->inUsersGroups(group, Groups)) { //only add if this is in a group we want - seq.printSequence(*(filehandles[group+rareAbund])); + ofstream out; + m->openOutputFileAppend(files[group+rareAbund], out); + seq.printSequence(out); out.close(); }else if(group == "not found") { m->mothurOut(seq.getName() + " is not in your groupfile. Ignoring."); m->mothurOutEndLine(); } @@ -1326,7 +1313,9 @@ int SplitAbundCommand::parseFasta(string tag) { //namefile vector thisSeqsGroups = ct.getGroups(names[0]); //we only need names[0], because there is no namefile for (int i = 0; i < thisSeqsGroups.size(); i++) { if (m->inUsersGroups(thisSeqsGroups[i], Groups)) { //only add if this is in a group we want - seq.printSequence(*(filehandles[thisSeqsGroups[i]+rareAbund])); + ofstream out; + m->openOutputFileAppend(files[thisSeqsGroups[i]+rareAbund], out); + seq.printSequence(out); out.close(); } } } @@ -1335,14 +1324,12 @@ int SplitAbundCommand::parseFasta(string tag) { //namefile } in.close(); - for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { - (*(filehandles[it3->first])).close(); + for (it3 = files.begin(); it3 != files.end(); it3++) { map variables; variables["[filename]"] = fileroot; variables["[tag]"] = tag; variables["[tag2]"] = it3->first; outputNames.push_back(getOutputFileName("fasta",variables)); outputTypes["fasta"].push_back(getOutputFileName("fasta",variables)); - delete it3->second; } } From 9149aa93217bbcd9c03358068f19fba14388d658 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 1 Feb 2016 11:56:49 -0500 Subject: [PATCH 094/135] Solves Linux "Illegal Instruction" error mtune=native optimized for Intel chip set. mtune=generic allows for any chip set. #179 --- makefile | 9 +-------- makefile-internal | 4 ++-- 2 files changed, 3 insertions(+), 10 deletions(-) diff --git a/makefile b/makefile index e053d4ed..52a2d322 100644 --- a/makefile +++ b/makefile @@ -11,7 +11,6 @@ 64BIT_VERSION ?= yes USEREADLINE ?= yes USEBOOST ?= yes -OPTIMIZE ?= yes MOTHUR_FILES="\"Enter_your_default_path_here\"" RELEASE_DATE = "\"1/04/2016\"" VERSION = "\"1.37.0\"" @@ -20,8 +19,7 @@ ifeq ($(strip $(64BIT_VERSION)),yes) CXXFLAGS += -DBIT_VERSION endif - -CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION} +CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION} -O3 ifeq ($(strip $(MOTHUR_FILES)),"\"Enter_your_default_path_here\"") else @@ -44,11 +42,6 @@ ifeq ($(strip $(USEBOOST)),yes) LIBS += -lboost_iostreams endif -# Optimize to level 3: -ifeq ($(strip $(OPTIMIZE)),yes) - CXXFLAGS += -O3 -endif - # # INCLUDE directories for mothur # diff --git a/makefile-internal b/makefile-internal index 5a5b974c..1442c7ab 100644 --- a/makefile-internal +++ b/makefile-internal @@ -17,8 +17,8 @@ ifeq ($(strip $(64BIT_VERSION)),yes) #CC = x86_64-w64-mingw32-g++ #TARGET_ARCH += -m64 -static - #if you are a linux user use the following line - #CXXFLAGS += -mtune=native -march=native + #if you are a linux user use the following line - specific processor builds in future?? + #CXXFLAGS += -mtune=generic CXXFLAGS += -DBIT_VERSION endif From 5add4fd18a618c31785c3c654355cb2a6cb685c7 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 1 Feb 2016 11:59:56 -0500 Subject: [PATCH 095/135] Removes unused code from mothurOut --- source/mothurout.cpp | 85 ---------------------------------------------------- source/mothurout.h | 2 -- 2 files changed, 87 deletions(-) diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 59eb7082..15060284 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -475,91 +475,6 @@ void MothurOut::errorOut(exception& e, string object, string function) { } } } -/*********************************************************************************************/ -//The following was originally from http://stackoverflow.com/questions/669438/how-to-get-memory-usage-at-run-time-in-c -// process_mem_usage(double &, double &) - takes two doubles by reference, -// attempts to read the system-dependent data for a process' virtual memory -// size and resident set size, and return the results in KB. -// -// On failure, returns 0.0, 0.0 -int MothurOut::mem_usage(double& vm_usage, double& resident_set) { - #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - vm_usage = 0.0; - resident_set = 0.0; - - // 'file' stat seems to give the most reliable results - // - ifstream stat_stream("/proc/self/stat",ios_base::in); - - // dummy vars for leading entries in stat that we don't care about - // - string pid, comm, state, ppid, pgrp, session, tty_nr; - string tpgid, flags, minflt, cminflt, majflt, cmajflt; - string utime, stime, cutime, cstime, priority, nice; - string O, itrealvalue, starttime; - - // the two fields we want - // - unsigned long vsize; - long rss; - - stat_stream >> pid >> comm >> state >> ppid >> pgrp >> session >> tty_nr - >> tpgid >> flags >> minflt >> cminflt >> majflt >> cmajflt - >> utime >> stime >> cutime >> cstime >> priority >> nice - >> O >> itrealvalue >> starttime >> vsize >> rss; // don't care about the rest - - long page_size_kb = sysconf(_SC_PAGE_SIZE) / 1024; // in case x86-64 is configured to use 2MB pages - vm_usage = vsize / 1024.0; - resident_set = rss * page_size_kb; - - mothurOut("Memory Usage: vm = " + toString(vm_usage) + " rss = " + toString(resident_set) + "\n"); - return 0; - - #else -/* //windows memory usage - // Get the list of process identifiers. - DWORD aProcesses[1024], cbNeeded, cProcesses; - - if ( !EnumProcesses( aProcesses, sizeof(aProcesses), &cbNeeded ) ){ return 1; } - - // Calculate how many process identifiers were returned. - cProcesses = cbNeeded / sizeof(DWORD); - - // Print the memory usage for each process - for (int i = 0; i < cProcesses; i++ ) { - DWORD processID = aProcesses[i]; - - PROCESS_MEMORY_COUNTERS pmc; - - HANDLE hProcess = OpenProcess((PROCESS_QUERY_INFORMATION | PROCESS_VM_READ), FALSE, processID); - - // Print the process identifier. - printf( "\nProcess ID: %u\n", processID); - - if (NULL != hProcess) { - - if ( GetProcessMemoryInfo( hProcess, &pmc, sizeof(pmc)) ) { - printf( "\tPageFaultCount: 0x%08X\n", pmc.PageFaultCount ); - printf( "\tPeakWorkingSetSize: 0x%08X\n", pmc.PeakWorkingSetSize ); - printf( "\tWorkingSetSize: 0x%08X\n", pmc.WorkingSetSize ); - printf( "\tQuotaPeakPagedPoolUsage: 0x%08X\n", pmc.QuotaPeakPagedPoolUsage ); - printf( "\tQuotaPagedPoolUsage: 0x%08X\n", pmc.QuotaPagedPoolUsage ); - printf( "\tQuotaPeakNonPagedPoolUsage: 0x%08X\n", pmc.QuotaPeakNonPagedPoolUsage ); - printf( "\tQuotaNonPagedPoolUsage: 0x%08X\n", pmc.QuotaNonPagedPoolUsage ); - printf( "\tPagefileUsage: 0x%08X\n", pmc.PagefileUsage ); - printf( "\tPeakPagefileUsage: 0x%08X\n", pmc.PeakPagefileUsage ); - } - CloseHandle(hProcess); - } - } -*/ - return 0; - - #endif -} - - /***********************************************************************/ int MothurOut::openOutputFileAppend(string fileName, ofstream& fileHandle){ try { diff --git a/source/mothurout.h b/source/mothurout.h index bc1e3b19..a38718c0 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -336,8 +336,6 @@ class MothurOut { ofstream out; int numErrors; - int mem_usage(double&, double&); - }; /***********************************************/ From 9add98ff3a45fda9c3827efd674e4d2366135da5 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Fri, 5 Feb 2016 14:34:02 -0500 Subject: [PATCH 096/135] WIP vsearch --- source/vsearch_src/allpairs.cc | 70 +++++++++++++++++++++----- source/vsearch_src/chimera.cc | 110 ++++++++++++++++++++++++++++++++--------- source/vsearch_src/cluster.cc | 33 ++++++++++++- source/vsearch_src/mask.cc | 32 ++++++++++-- source/vsearch_src/search.cc | 64 +++++++++++++++++++++--- source/vsearch_src/vsearch.h | 6 ++- 6 files changed, 266 insertions(+), 49 deletions(-) diff --git a/source/vsearch_src/allpairs.cc b/source/vsearch_src/allpairs.cc index 76a42a8f..0d536549 100644 --- a/source/vsearch_src/allpairs.cc +++ b/source/vsearch_src/allpairs.cc @@ -60,15 +60,23 @@ #include "vsearch.h" +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + static pthread_t * pthread; /* global constants/data, no need for synchronization */ -static int seqcount; /* number of database sequences */ static pthread_attr_t attr; /* global data protected by mutex */ static pthread_mutex_t mutex_input; static pthread_mutex_t mutex_output; + +#else + +create thread + +#endif + static int qmatches; static int queries; static long progress = 0; @@ -80,6 +88,7 @@ static FILE * fp_uc = 0; static FILE * fp_fastapairs = 0; static FILE * fp_matched = 0; static FILE * fp_notmatched = 0; +static int seqcount; /* number of database sequences */ inline int allpairs_hit_compare_typed(struct hit * x, struct hit * y) { @@ -309,17 +318,24 @@ void allpairs_thread_run(long t) while (cont) { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_lock(&mutex_input); - +#else + todo +#endif int query_no = queries; if (query_no < seqcount) { queries++; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) /* let other threads read input */ pthread_mutex_unlock(&mutex_input); - +#else + todo +#endif /* init search info */ si->query_no = query_no; si->qsize = db_getabundance(query_no); @@ -438,10 +454,14 @@ void allpairs_thread_run(long t) qsort(finalhits, si->accepts, sizeof(struct hit), allpairs_hit_compare); } - + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* lock mutex for update of global data and output */ pthread_mutex_lock(&mutex_output); - +#else + todo +#endif /* output results */ allpairs_output_results(si->accepts, finalhits, @@ -457,9 +477,14 @@ void allpairs_thread_run(long t) /* show progress */ progress += seqcount - query_no - 1; progress_update(progress); - +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_output); - + +#else + todo +#endif + /* free memory for alignment strings */ for(int i=0; i < si->hit_count; i++) if (si->hits[i].aligned) @@ -467,9 +492,13 @@ void allpairs_thread_run(long t) } else { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* let other threads read input */ pthread_mutex_unlock(&mutex_input); - +#else + todo +#endif cont = 0; } } @@ -504,9 +533,11 @@ void allpairs_thread_worker_run() { /* initialize threads, start them, join them and return */ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_attr_init(&attr); pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - + /* init and create worker threads, put them into stand-by mode */ for(int t=0; tmutex); @@ -189,11 +199,17 @@ void * threads_worker(void * vp) } } pthread_mutex_unlock(&tip->mutex); +#else + todo +#endif + return 0; } void threads_wakeup(int queries) { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + int threads = queries > opt_threads ? opt_threads : queries; int queries_rest = queries; int threads_rest = threads; @@ -225,10 +241,15 @@ void threads_wakeup(int queries) pthread_cond_wait(&tip->cond, &tip->mutex); pthread_mutex_unlock(&tip->mutex); } +#else + todo +#endif } void threads_init() { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_attr_init(&attr); pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); @@ -245,10 +266,15 @@ void threads_init() if (pthread_create(&tip->thread, &attr, threads_worker, (void*)(long)t)) fatal("Cannot create thread"); } +#else + todo +#endif } void threads_exit() { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* finish and clean up worker threads */ for(int t=0; t 1) @@ -334,9 +356,13 @@ void search_thread_run(long t) } int match = search_query(t); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) /* lock mutex for update of global data and output */ pthread_mutex_lock(&mutex_output); +#else + todo +#endif /* update stats */ queries++; @@ -346,12 +372,23 @@ void search_thread_run(long t) /* show progress */ progress_update(progress); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) pthread_mutex_unlock(&mutex_output); +#else + todo +#endif + } else { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_input); +#else + todo +#endif + break; } } @@ -420,6 +457,7 @@ void * search_thread_worker(void * vp) void search_thread_worker_run() { /* initialize threads, start them, join them and return */ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) pthread_attr_init(&attr); pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); @@ -446,6 +484,9 @@ void search_thread_worker_run() } pthread_attr_destroy(&attr); +#else + todo +#endif } @@ -601,21 +642,28 @@ void usearch_global(char * cmdline, char * progheader) sizeof(struct searchinfo_s)); else si_minus = 0; - +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); /* init mutexes for input and output */ pthread_mutex_init(&mutex_input, NULL); pthread_mutex_init(&mutex_output, NULL); - +#else + todo +#endif progress_init("Searching", fasta_get_size(query_fasta_h)); search_thread_worker_run(); progress_done(); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) pthread_mutex_destroy(&mutex_output); pthread_mutex_destroy(&mutex_input); free(pthread); +#else + todo +#endif free(si_plus); if (si_minus) free(si_minus); diff --git a/source/vsearch_src/vsearch.h b/source/vsearch_src/vsearch.h index 3e0f06bf..f5c4b353 100644 --- a/source/vsearch_src/vsearch.h +++ b/source/vsearch_src/vsearch.h @@ -62,7 +62,9 @@ #include #include -#include +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + #include +#endif //#include #include #include @@ -118,7 +120,7 @@ //vsearch definitions #define PROG_NAME "vsearch" //PACKAGE -#define PROG_VERSION "1.4.1" //PACKAGE_VERSION +#define PROG_VERSION "1.9.7" //PACKAGE_VERSION /* Define to the address where bug reports for this package should be sent. */ #define PACKAGE_BUGREPORT "torognes@ifi.uio.no" From a123a0b8491833ace051b3e964658df84cca34b5 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Sat, 6 Feb 2016 21:16:19 -0500 Subject: [PATCH 097/135] Makes file paths relative to group in Xcode project --- Mothur.xcodeproj/project.pbxproj | 794 +++++++++++++++++++-------------------- 1 file changed, 392 insertions(+), 402 deletions(-) mode change 100644 => 100755 Mothur.xcodeproj/project.pbxproj diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj old mode 100644 new mode 100755 index 5806e67c..abef6c0b --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -7,6 +7,7 @@ objects = { /* Begin PBXBuildFile section */ + 2114A7681C654D7400D3D8D9 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; }; 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; }; 481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; }; @@ -17,7 +18,6 @@ 481FB52B1AC1B09F0076CFF3 /* setseedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB5281AC19F8B0076CFF3 /* setseedcommand.cpp */; }; 481FB52C1AC1B0A70076CFF3 /* commandfactory.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6AF12D37EC400DA6239 /* commandfactory.cpp */; }; 481FB52E1AC1B0CB0076CFF3 /* testsetseedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB52D1AC1B0CB0076CFF3 /* testsetseedcommand.cpp */; }; - 481FB52F1AC1B5C20076CFF3 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */; }; 481FB5301AC1B5C80076CFF3 /* calcsparcc.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A77B7189173D40E4002163C2 /* calcsparcc.cpp */; }; 481FB5311AC1B5CD0076CFF3 /* clearcut.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B69412D37EC400DA6239 /* clearcut.cpp */; }; 481FB5321AC1B5D00076CFF3 /* cmdargs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */; }; @@ -451,8 +451,6 @@ 48A52FDF1BC428DF00548F6C /* util.cc in Sources */ = {isa = PBXBuildFile; fileRef = 48A52F951BC428DF00548F6C /* util.cc */; }; 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A77B7189173D40E4002163C2 /* calcsparcc.cpp */, A7E9BA4F12D398D700DA6239 /* clearcut */, @@ -2003,8 +1994,8 @@ 7B21820217AD77BD00286E6A /* svm.hpp */, ); name = svm; - path = /Users/sarahwestcott/Desktop/mothur; - sourceTree = ""; + path = ../../../sarahwestcott/Desktop/mothur; + sourceTree = ""; }; A7386C191619C9FB00651424 /* randomforest */ = { isa = PBXGroup; @@ -2061,7 +2052,7 @@ A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */, 48C728781B728D6B00D40830 /* biominfocommand.h */, 48C728771B728D6B00D40830 /* biominfocommand.cpp */, - A7E9B67312D37EC400DA6239 /* catchallcommand.h */, + 2114A7691C654FBB00D3D8D9 /* catchallcommand.h */, A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */, A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */, A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */, @@ -2717,8 +2708,8 @@ A7D755D91535F679009BF21A /* treereader.cpp */, ); name = read; - path = /Users/sarahwestcott/Desktop/mothur; - sourceTree = ""; + path = ../../../sarahwestcott/Desktop/mothur; + sourceTree = ""; }; A7E9BA5612D39BD800DA6239 /* metastats */ = { isa = PBXGroup; @@ -2834,7 +2825,6 @@ 481FB5611AC1B69B0076CFF3 /* sharedjsd.cpp in Sources */, 481FB5AF1AC1B7300076CFF3 /* createdatabasecommand.cpp in Sources */, 481FB5731AC1B6EA0076CFF3 /* simpsoneven.cpp in Sources */, - 481FB52F1AC1B5C20076CFF3 /* averagelinkage.cpp in Sources */, 481FB58D1AC1B7060076CFF3 /* collect.cpp in Sources */, 481FB5A01AC1B71B0076CFF3 /* classifysvmsharedcommand.cpp in Sources */, 481FB5741AC1B6EA0076CFF3 /* smithwilson.cpp in Sources */, @@ -3227,7 +3217,6 @@ A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */, A7E9B88412D37EC400DA6239 /* alignmentcell.cpp in Sources */, A7E9B88512D37EC400DA6239 /* alignmentdb.cpp in Sources */, - A7E9B88612D37EC400DA6239 /* averagelinkage.cpp in Sources */, A7E9B88712D37EC400DA6239 /* bayesian.cpp in Sources */, A7E9B88812D37EC400DA6239 /* bellerophon.cpp in Sources */, 48A52FAA1BC428DF00548F6C /* cluster.cc in Sources */, @@ -3293,6 +3282,7 @@ A7E9B8C312D37EC400DA6239 /* fasta.cpp in Sources */, 48A52F9A1BC428DF00548F6C /* abundance.cc in Sources */, A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */, + 2114A7681C654D7400D3D8D9 /* averagelinkage.cpp in Sources */, A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */, A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */, 48A52FBE1BC428DF00548F6C /* maps.cc in Sources */, From 49fbc9d8564925be952f588243d24498f4ac7b6f Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Sun, 7 Feb 2016 16:56:47 -0500 Subject: [PATCH 098/135] vsearch weekend updates #169 --- Mothur.xcodeproj/project.pbxproj | 26 +- source/vsearch_src/abundance.cc | 362 +-- source/vsearch_src/abundance.h | 181 +- source/vsearch_src/align.cc | 0 source/vsearch_src/align.h | 5 - source/vsearch_src/align_simd.cc | 8 +- source/vsearch_src/align_simd.h | 7 - source/vsearch_src/allpairs.cc | 1385 +++++---- source/vsearch_src/allpairs.h | 7 - source/vsearch_src/arch.cc | 233 +- source/vsearch_src/arch.h | 2 - source/vsearch_src/bitmap.cc | 0 source/vsearch_src/bitmap.h | 0 source/vsearch_src/chimera.cc | 3204 ++++++++++---------- source/vsearch_src/chimera.h | 0 source/vsearch_src/cluster.cc | 181 +- source/vsearch_src/cluster.h | 0 source/vsearch_src/cpu.cc | 55 +- source/vsearch_src/cpu.h | 3 + source/vsearch_src/db.cc | 124 +- source/vsearch_src/db.h | 14 +- source/vsearch_src/dbindex.cc | 12 +- source/vsearch_src/dbindex.h | 6 +- source/vsearch_src/derep.cc | 141 +- source/vsearch_src/derep.h | 0 source/vsearch_src/fasta.cc | 222 +- source/vsearch_src/fasta.h | 34 +- source/vsearch_src/fastq.cc | 151 +- source/vsearch_src/fastq.h | 20 + source/vsearch_src/fastqops.cc | 460 +-- source/vsearch_src/fastqops.h | 1 + source/vsearch_src/fastxdetect.cc | 0 source/vsearch_src/fastxdetect.h | 0 source/vsearch_src/linmemalign.cc | 0 source/vsearch_src/linmemalign.h | 0 source/vsearch_src/maps.cc | 32 +- source/vsearch_src/maps.h | 3 +- source/vsearch_src/mask.cc | 170 +- source/vsearch_src/mask.h | 9 +- source/vsearch_src/md5.c | 590 ++-- source/vsearch_src/md5.h | 0 source/vsearch_src/mergepairs.cc | 812 +++++ source/vsearch_src/mergepairs.h | 61 + source/vsearch_src/minheap.cc | 528 ++-- source/vsearch_src/minheap.h | 0 source/vsearch_src/msa.cc | 15 +- source/vsearch_src/msa.h | 2 +- source/vsearch_src/pvalue.h | 4843 ++++++++++++++++++++++++++++++ source/vsearch_src/results.cc | 14 +- source/vsearch_src/results.h | 0 source/vsearch_src/search.cc | 1387 +++++---- source/vsearch_src/search.h | 0 source/vsearch_src/searchcore.cc | 31 +- source/vsearch_src/searchcore.h | 13 +- source/vsearch_src/searchexact.cc | 717 +++++ source/vsearch_src/searchexact.h | 61 + source/vsearch_src/sha1.c | 0 source/vsearch_src/sha1.h | 0 source/vsearch_src/showalign.cc | 3 +- source/vsearch_src/showalign.h | 0 source/vsearch_src/shuffle.cc | 2 +- source/vsearch_src/shuffle.h | 0 source/vsearch_src/sortbylength.cc | 37 +- source/vsearch_src/sortbylength.h | 0 source/vsearch_src/sortbysize.cc | 37 +- source/vsearch_src/sortbysize.h | 0 source/vsearch_src/subsample.cc | 61 +- source/vsearch_src/subsample.h | 0 source/vsearch_src/unique.cc | 105 +- source/vsearch_src/unique.h | 3 +- source/vsearch_src/userfields.cc | 0 source/vsearch_src/userfields.h | 0 source/vsearch_src/util.cc | 846 +++--- source/vsearch_src/util.h | 17 +- source/vsearch_src/vsearch.cc | 4576 +++++++++++++++------------- source/vsearch_src/vsearch.h | 717 ++--- source/vsearch_src/vsearchfileparser.cpp | 255 -- source/vsearch_src/vsearchfileparser.h | 44 - source/vsearch_src/xstring.h | 0 79 files changed, 14876 insertions(+), 7959 deletions(-) mode change 100644 => 100755 source/vsearch_src/abundance.cc mode change 100644 => 100755 source/vsearch_src/abundance.h mode change 100644 => 100755 source/vsearch_src/align.cc mode change 100644 => 100755 source/vsearch_src/align.h mode change 100644 => 100755 source/vsearch_src/align_simd.cc mode change 100644 => 100755 source/vsearch_src/align_simd.h mode change 100644 => 100755 source/vsearch_src/allpairs.cc mode change 100644 => 100755 source/vsearch_src/allpairs.h mode change 100644 => 100755 source/vsearch_src/arch.cc mode change 100644 => 100755 source/vsearch_src/arch.h mode change 100644 => 100755 source/vsearch_src/bitmap.cc mode change 100644 => 100755 source/vsearch_src/bitmap.h mode change 100644 => 100755 source/vsearch_src/chimera.cc mode change 100644 => 100755 source/vsearch_src/chimera.h mode change 100644 => 100755 source/vsearch_src/cluster.cc mode change 100644 => 100755 source/vsearch_src/cluster.h mode change 100644 => 100755 source/vsearch_src/cpu.cc mode change 100644 => 100755 source/vsearch_src/cpu.h mode change 100644 => 100755 source/vsearch_src/db.cc mode change 100644 => 100755 source/vsearch_src/db.h mode change 100644 => 100755 source/vsearch_src/dbindex.cc mode change 100644 => 100755 source/vsearch_src/dbindex.h mode change 100644 => 100755 source/vsearch_src/derep.cc mode change 100644 => 100755 source/vsearch_src/derep.h mode change 100644 => 100755 source/vsearch_src/fasta.cc mode change 100644 => 100755 source/vsearch_src/fasta.h mode change 100644 => 100755 source/vsearch_src/fastq.cc mode change 100644 => 100755 source/vsearch_src/fastq.h mode change 100644 => 100755 source/vsearch_src/fastqops.cc mode change 100644 => 100755 source/vsearch_src/fastqops.h mode change 100644 => 100755 source/vsearch_src/fastxdetect.cc mode change 100644 => 100755 source/vsearch_src/fastxdetect.h mode change 100644 => 100755 source/vsearch_src/linmemalign.cc mode change 100644 => 100755 source/vsearch_src/linmemalign.h mode change 100644 => 100755 source/vsearch_src/maps.cc mode change 100644 => 100755 source/vsearch_src/maps.h mode change 100644 => 100755 source/vsearch_src/mask.cc mode change 100644 => 100755 source/vsearch_src/mask.h mode change 100644 => 100755 source/vsearch_src/md5.c mode change 100644 => 100755 source/vsearch_src/md5.h create mode 100755 source/vsearch_src/mergepairs.cc create mode 100755 source/vsearch_src/mergepairs.h mode change 100644 => 100755 source/vsearch_src/minheap.cc mode change 100644 => 100755 source/vsearch_src/minheap.h mode change 100644 => 100755 source/vsearch_src/msa.cc mode change 100644 => 100755 source/vsearch_src/msa.h create mode 100755 source/vsearch_src/pvalue.h mode change 100644 => 100755 source/vsearch_src/results.cc mode change 100644 => 100755 source/vsearch_src/results.h mode change 100644 => 100755 source/vsearch_src/search.cc mode change 100644 => 100755 source/vsearch_src/search.h mode change 100644 => 100755 source/vsearch_src/searchcore.cc mode change 100644 => 100755 source/vsearch_src/searchcore.h create mode 100755 source/vsearch_src/searchexact.cc create mode 100755 source/vsearch_src/searchexact.h mode change 100644 => 100755 source/vsearch_src/sha1.c mode change 100644 => 100755 source/vsearch_src/sha1.h mode change 100644 => 100755 source/vsearch_src/showalign.cc mode change 100644 => 100755 source/vsearch_src/showalign.h mode change 100644 => 100755 source/vsearch_src/shuffle.cc mode change 100644 => 100755 source/vsearch_src/shuffle.h mode change 100644 => 100755 source/vsearch_src/sortbylength.cc mode change 100644 => 100755 source/vsearch_src/sortbylength.h mode change 100644 => 100755 source/vsearch_src/sortbysize.cc mode change 100644 => 100755 source/vsearch_src/sortbysize.h mode change 100644 => 100755 source/vsearch_src/subsample.cc mode change 100644 => 100755 source/vsearch_src/subsample.h mode change 100644 => 100755 source/vsearch_src/unique.cc mode change 100644 => 100755 source/vsearch_src/unique.h mode change 100644 => 100755 source/vsearch_src/userfields.cc mode change 100644 => 100755 source/vsearch_src/userfields.h mode change 100644 => 100755 source/vsearch_src/util.cc mode change 100644 => 100755 source/vsearch_src/util.h mode change 100644 => 100755 source/vsearch_src/vsearch.cc mode change 100644 => 100755 source/vsearch_src/vsearch.h delete mode 100644 source/vsearch_src/vsearchfileparser.cpp delete mode 100644 source/vsearch_src/vsearchfileparser.h mode change 100644 => 100755 source/vsearch_src/xstring.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index abef6c0b..e4634576 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -10,6 +10,8 @@ 2114A7681C654D7400D3D8D9 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; }; 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; }; + 21C92AB61C67ACC400597EBB /* mergepairs.cc in Sources */ = {isa = PBXBuildFile; fileRef = 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-888,8 +895,8 @@ 487C5A851AB88B93002AF48A /* mimarksattributescommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = mimarksattributescommand.cpp; path = source/commands/mimarksattributescommand.cpp; sourceTree = ""; }; 487C5A861AB88B93002AF48A /* mimarksattributescommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mimarksattributescommand.h; path = source/commands/mimarksattributescommand.h; sourceTree = ""; }; 48844B261AA74AF9006EF2B8 /* compare.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = compare.h; path = source/datastructures/compare.h; sourceTree = ""; }; - 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = vsearchfileparser.cpp; path = source/vsearch_src/vsearchfileparser.cpp; sourceTree = ""; }; - 489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = vsearchfileparser.h; path = source/vsearch_src/vsearchfileparser.h; sourceTree = ""; }; + 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = vsearchfileparser.cpp; path = source/vsearchfileparser.cpp; sourceTree = ""; }; + 489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = vsearchfileparser.h; path = source/vsearchfileparser.h; sourceTree = ""; }; 48A52F4D1BC428DF00548F6C /* abundance.cc */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = abundance.cc; path = source/vsearch_src/abundance.cc; sourceTree = ""; }; 48A52F4E1BC428DF00548F6C /* abundance.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = abundance.h; path = source/vsearch_src/abundance.h; sourceTree = ""; }; 48A52F4F1BC428DF00548F6C /* align_simd.cc */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = align_simd.cc; path = source/vsearch_src/align_simd.cc; sourceTree = ""; }; @@ -1842,6 +1849,8 @@ A7E9B87712D37EC400DA6239 /* validparameter.h */, A7E9B87812D37EC400DA6239 /* venn.cpp */, A7E9B87912D37EC400DA6239 /* venn.h */, + 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */, + 489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */, 48A52F4C1BC423E600548F6C /* vsearch */, A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */, ); @@ -1949,6 +1958,11 @@ 48A52F821BC428DF00548F6C /* search.h */, 48A52F831BC428DF00548F6C /* searchcore.cc */, 48A52F841BC428DF00548F6C /* searchcore.h */, + 21C92AB11C67ACC400597EBB /* mergepairs.cc */, + 21C92AB21C67ACC400597EBB /* mergepairs.h */, + 21C92AB31C67ACC400597EBB /* pvalue.h */, + 21C92AB41C67ACC400597EBB /* searchexact.cc */, + 21C92AB51C67ACC400597EBB /* searchexact.h */, 48A52F851BC428DF00548F6C /* sha1.c */, 48A52F861BC428DF00548F6C /* sha1.h */, 48A52F871BC428DF00548F6C /* showalign.cc */, @@ -1969,8 +1983,6 @@ 48A52F961BC428DF00548F6C /* util.h */, 48A52F971BC428DF00548F6C /* vsearch.cc */, 48A52F981BC428DF00548F6C /* vsearch.h */, - 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */, - 489B55711BCD7F0100FB7DC8 /* vsearchfileparser.h */, 48A52F991BC428DF00548F6C /* xstring.h */, ); name = vsearch; @@ -3316,6 +3328,7 @@ A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */, A7E9B8E012D37EC400DA6239 /* hcluster.cpp in Sources */, A7E9B8E112D37EC400DA6239 /* hclustercommand.cpp in Sources */, + 21C92AB71C67ACC400597EBB /* searchexact.cc in Sources */, A7E9B8E212D37EC400DA6239 /* heatmap.cpp in Sources */, A7E9B8E312D37EC400DA6239 /* heatmapcommand.cpp in Sources */, A7E9B8E412D37EC400DA6239 /* heatmapsim.cpp in Sources */, @@ -3375,6 +3388,7 @@ A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */, 48A52FB01BC428DF00548F6C /* dbindex.cc in Sources */, A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */, + 21C92AB61C67ACC400597EBB /* mergepairs.cc in Sources */, 48A52FAE1BC428DF00548F6C /* db.cc in Sources */, A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */, A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */, @@ -3646,7 +3660,7 @@ ); PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = macosx10.9; + SDKROOT = iphoneos; SKIP_INSTALL = NO; }; name = Debug; @@ -3674,7 +3688,7 @@ ONLY_ACTIVE_ARCH = YES; PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = macosx10.9; + SDKROOT = iphoneos; SKIP_INSTALL = NO; "VALID_ARCHS[sdk=*]" = "i386 x86_64"; }; diff --git a/source/vsearch_src/abundance.cc b/source/vsearch_src/abundance.cc old mode 100644 new mode 100755 index 8c96c951..69a89358 --- a/source/vsearch_src/abundance.cc +++ b/source/vsearch_src/abundance.cc @@ -1,181 +1,181 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -abundance_t * abundance_init(void) -{ - abundance_t * a = (abundance_t *) xmalloc(sizeof(abundance_t)); - if (regcomp(&a->regex, "(^|;)size=([0-9]+)(;|$)", REG_EXTENDED)) - fatal("Compilation of regular expression for abundance annotation failed"); - return a; -} - -void abundance_exit(abundance_t * a) -{ - regfree(&a->regex); - free(a); -} - -long abundance_get(abundance_t * a, char * header) -{ - /* read size/abundance annotation */ - - long abundance = 1; - regmatch_t pmatch[4]; - - if (!regexec(&a->regex, header, 4, pmatch, 0)) - { - long number = atol(header + pmatch[2].rm_so); - if (number > 0) - abundance = number; - else - fatal("Invalid (zero) abundance annotation in fasta header"); - } - return abundance; -} - -void abundance_fprint_header_with_size(abundance_t * a, - FILE * fp, - char * header, - int header_length, - unsigned long size) -{ - /* remove any previous size annotation */ - /* regexp search for "(^|;)(\d+)(;|$)" */ - /* replace by ';' if not at either end */ - - regmatch_t pmatch[1]; - - if (!regexec(&a->regex, header, 1, pmatch, 0)) - { - int pat_start = pmatch[0].rm_so; - int pat_end = pmatch[0].rm_eo; - - fprintf(fp, - ">%.*s%s%.*s%ssize=%lu;\n", - pat_start, header, - (pat_start > 0 ? ";" : ""), - header_length - pat_end, header + pat_end, - (((pat_end < header_length) && - (header[header_length - 1] != ';')) ? ";" : ""), - size); - } - else - { - fprintf(fp, - ">%s%ssize=%lu;\n", - header, - (((header_length == 0) || - (header[header_length - 1] != ';')) ? ";" : ""), - size); - } -} - -void abundance_fprint_header_strip_size(abundance_t * a, - FILE * fp, - char * header, - int header_length) -{ - regmatch_t pmatch[1]; - - if (!regexec(&a->regex, header, 1, pmatch, 0)) - { - int pat_start = pmatch[0].rm_so; - int pat_end = pmatch[0].rm_eo; - - fprintf(fp, - ">%.*s%s%.*s\n", - pat_start, header, - ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", - header_length - pat_end, header + pat_end); - } - else - fprintf(fp, ">%s\n", header); -} - -char * abundance_strip_size(abundance_t * a, - char * header, - int header_length) -{ - int ret; - char * temp = 0; - regmatch_t pmatch[1]; - - - if (!regexec(&a->regex, header, 1, pmatch, 0)) - { - int pat_start = pmatch[0].rm_so; - int pat_end = pmatch[0].rm_eo; - - ret = asprintf(&temp, - "%.*s%s%.*s", - pat_start, header, - ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", - header_length - pat_end, header + pat_end); - } - else - ret = asprintf(&temp, "%s", header); - - if (ret == -1) - fatal("Out of memory"); - - return temp; -} +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +abundance_t * abundance_init(void) +{ + abundance_t * a = (abundance_t *) xmalloc(sizeof(abundance_t)); + if (regcomp(&a->regex, "(^|;)size=([0-9]+)(;|$)",REG_EXTENDED)) + fatal("Compilation of regular expression for abundance annotation failed"); + return a; +} + +void abundance_exit(abundance_t * a) +{ + regfree(&a->regex); + free(a); +} + +long abundance_get(abundance_t * a, char * header) +{ + /* read size/abundance annotation */ + + long abundance = 1; + regmatch_t pmatch[4]; + + if (!regexec(&a->regex, header, 4, pmatch, 0)) + { + long number = atol(header + pmatch[2].rm_so); + if (number > 0) + abundance = number; + else + fatal("Invalid (zero) abundance annotation in fasta header"); + } + return abundance; +} + +void abundance_fprint_header_with_size(abundance_t * a, + FILE * fp, + char * header, + int header_length, + unsigned long size) +{ + /* remove any previous size annotation */ + /* regexp search for "(^|;)(\d+)(;|$)" */ + /* replace by ';' if not at either end */ + + regmatch_t pmatch[1]; + + if (!regexec(&a->regex, header, 1, pmatch, 0)) + { + int pat_start = pmatch[0].rm_so; + int pat_end = pmatch[0].rm_eo; + + fprintf(fp, + "%.*s%s%.*s%ssize=%lu;", + pat_start, header, + (pat_start > 0 ? ";" : ""), + header_length - pat_end, header + pat_end, + (((pat_end < header_length) && + (header[header_length - 1] != ';')) ? ";" : ""), + size); + } + else + { + fprintf(fp, + "%s%ssize=%lu;", + header, + (((header_length == 0) || + (header[header_length - 1] != ';')) ? ";" : ""), + size); + } +} + +void abundance_fprint_header_strip_size(abundance_t * a, + FILE * fp, + char * header, + int header_length) +{ + regmatch_t pmatch[1]; + + if (!regexec(&a->regex, header, 1, pmatch, 0)) + { + int pat_start = pmatch[0].rm_so; + int pat_end = pmatch[0].rm_eo; + + fprintf(fp, + "%.*s%s%.*s", + pat_start, header, + ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", + header_length - pat_end, header + pat_end); + } + else + fprintf(fp, "%s", header); +} + +char * abundance_strip_size(abundance_t * a, + char * header, + int header_length) +{ + int ret; + char * temp = 0; + regmatch_t pmatch[1]; + + + if (!regexec(&a->regex, header, 1, pmatch, 0)) + { + int pat_start = pmatch[0].rm_so; + int pat_end = pmatch[0].rm_eo; + + ret = sprintf(temp, + "%.*s%s%.*s", + pat_start, header, + ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", + header_length - pat_end, header + pat_end); + } + else + ret = sprintf(temp, "%s", header); + + if (ret == -1) + fatal("Out of memory"); + + return temp; +} diff --git a/source/vsearch_src/abundance.h b/source/vsearch_src/abundance.h old mode 100644 new mode 100755 index 6d36474f..ad6c1cbc --- a/source/vsearch_src/abundance.h +++ b/source/vsearch_src/abundance.h @@ -1,96 +1,85 @@ - - - -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#if defined(_WIN32) -#include -#include -#endif - -typedef struct abundance_s -{ - regex_t regex; -} abundance_t; - -abundance_t * abundance_init(void); - -void abundance_exit(abundance_t * a); - -long abundance_get(abundance_t * a, char * header); - -void abundance_fprint_header_with_size(abundance_t * a, - FILE * fp, - char * header, - int header_length, - unsigned long size); - -void abundance_fprint_header_strip_size(abundance_t * a, - FILE * fp, - char * header, - int header_length); - -char * abundance_strip_size(abundance_t * a, - char * header, - int header_length); - - - +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +typedef struct abundance_s +{ + regex_t regex; +} abundance_t; + +abundance_t * abundance_init(void); + +void abundance_exit(abundance_t * a); + +long abundance_get(abundance_t * a, char * header); + +void abundance_fprint_header_with_size(abundance_t * a, + FILE * fp, + char * header, + int header_length, + unsigned long size); + +void abundance_fprint_header_strip_size(abundance_t * a, + FILE * fp, + char * header, + int header_length); + +char * abundance_strip_size(abundance_t * a, + char * header, + int header_length); diff --git a/source/vsearch_src/align.cc b/source/vsearch_src/align.cc old mode 100644 new mode 100755 diff --git a/source/vsearch_src/align.h b/source/vsearch_src/align.h old mode 100644 new mode 100755 index ce18f332..23d7ffa1 --- a/source/vsearch_src/align.h +++ b/source/vsearch_src/align.h @@ -1,5 +1,3 @@ - - /* VSEARCH: a versatile open source tool for metagenomics @@ -92,6 +90,3 @@ void nw_align(char * dseq, long queryno, long dbseqno, struct nwinfo_s * nw); - - - diff --git a/source/vsearch_src/align_simd.cc b/source/vsearch_src/align_simd.cc old mode 100644 new mode 100755 index 346c3b83..778e4906 --- a/source/vsearch_src/align_simd.cc +++ b/source/vsearch_src/align_simd.cc @@ -1016,8 +1016,8 @@ void search16(s16info_s * s, R_target_interior); for(unsigned int j=0; j, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - -static pthread_t * pthread; - -/* global constants/data, no need for synchronization */ -static pthread_attr_t attr; - -/* global data protected by mutex */ -static pthread_mutex_t mutex_input; -static pthread_mutex_t mutex_output; - -#else - -create thread - -#endif - -static int qmatches; -static int queries; -static long progress = 0; -static FILE * fp_alnout = 0; -static FILE * fp_samout = 0; -static FILE * fp_userout = 0; -static FILE * fp_blast6out = 0; -static FILE * fp_uc = 0; -static FILE * fp_fastapairs = 0; -static FILE * fp_matched = 0; -static FILE * fp_notmatched = 0; -static int seqcount; /* number of database sequences */ - -inline int allpairs_hit_compare_typed(struct hit * x, struct hit * y) -{ - // high id, then low id - // early target, then late target - - if (x->id > y->id) - return -1; - else - if (x->id < y->id) - return +1; - else - if (x->target < y->target) - return -1; - else - if (x->target > y->target) - return +1; - else - return 0; -} - -int allpairs_hit_compare(const void * a, const void * b) -{ - return allpairs_hit_compare_typed((struct hit *) a, (struct hit *) b); -} - -void allpairs_output_results(int hit_count, - struct hit * hits, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ - /* show results */ - long toreport = MIN(opt_maxhits, hit_count); - - if (fp_alnout) - results_show_alnout(fp_alnout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_samout) - results_show_samout(fp_samout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (toreport) - { - double top_hit_id = hits[0].id; - - for(int t = 0; t < toreport; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - if (fp_fastapairs) - results_show_fastapairs_one(fp_fastapairs, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_uc) - if ((t==0) || opt_uc_allhits) - results_show_uc_one(fp_uc, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - } - else if (opt_output_no_hits) - { - if (fp_uc) - results_show_uc_one(fp_uc, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - - if (hit_count) - { - if (opt_matched) - { - fprintf(fp_matched, - ">%s\n", - query_head); - fprint_fasta_seq_only(fp_matched, - qsequence, - qseqlen, - opt_fasta_width); - } - } - else - { - if (opt_notmatched) - { - fprintf(fp_notmatched, - ">%s\n", - query_head); - fprint_fasta_seq_only(fp_notmatched, - qsequence, - qseqlen, - opt_fasta_width); - } - } -} - -void allpairs_thread_run(long t) -{ - struct searchinfo_s sia; - - struct searchinfo_s * si = & sia; - - si->strand = 0; - si->query_head_alloc = 0; - si->seq_alloc = 0; - si->kmersamplecount = 0; - si->kmers = 0; - si->m = 0; - si->finalized = 0; - - si->hits = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); - - struct nwinfo_s * nw = nw_init(); - - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - - LinearMemoryAligner lma; - - long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); - - lma.set_parameters(scorematrix, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - /* allocate memory for alignment results */ - unsigned int maxhits = seqcount; - unsigned int * pseqnos = - (unsigned int *) xmalloc(sizeof(unsigned int) * maxhits); - CELL * pscores = - (CELL*) xmalloc(sizeof(CELL) * maxhits); - unsigned short * paligned = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - unsigned short * pmatches = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - unsigned short * pmismatches = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - unsigned short * pgaps = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - char** pcigar = (char**) xmalloc(sizeof(char*) * maxhits); - - struct hit * finalhits - = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); - - bool cont = 1; - - while (cont) - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_lock(&mutex_input); -#else - todo -#endif - int query_no = queries; - - if (query_no < seqcount) - { - queries++; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); -#else - todo -#endif - /* init search info */ - si->query_no = query_no; - si->qsize = db_getabundance(query_no); - si->query_head_len = db_getheaderlen(query_no); - si->query_head = db_getheader(query_no); - si->qseqlen = db_getsequencelen(query_no); - si->qsequence = db_getsequence(query_no); - si->rejects = 0; - si->accepts = 0; - si->hit_count = 0; - - for(int target = si->query_no + 1; - target < seqcount; target++) - { - if (opt_acceptall || search_acceptable_unaligned(si, target)) - pseqnos[si->hit_count++] = target; - } - - if (si->hit_count) - { - /* perform alignments */ - - search16_qprep(si->s, si->qsequence, si->qseqlen); - - search16(si->s, - si->hit_count, - pseqnos, - pscores, - paligned, - pmatches, - pmismatches, - pgaps, - pcigar); - - /* convert to hit structure */ - for (int h = 0; h < si->hit_count; h++) - { - struct hit * hit = si->hits + h; - - unsigned int target = pseqnos[h]; - long nwscore = pscores[h]; - - char * nwcigar; - long nwalignmentlength; - long nwmatches; - long nwmismatches; - long nwgaps; - - if (nwscore == SHRT_MAX) - { - /* In case the SIMD aligner cannot align, - perform a new alignment with the - linear memory aligner */ - - char * tseq = db_getsequence(target); - long tseqlen = db_getsequencelen(target); - - if (pcigar[h]) - free(pcigar[h]); - - nwcigar = xstrdup(lma.align(si->qsequence, - tseq, - si->qseqlen, - tseqlen)); - lma.alignstats(nwcigar, - si->qsequence, - tseq, - & nwscore, - & nwalignmentlength, - & nwmatches, - & nwmismatches, - & nwgaps); - } - else - { - nwcigar = pcigar[h]; - nwalignmentlength = paligned[h]; - nwmatches = pmatches[h]; - nwmismatches = pmismatches[h]; - nwgaps = pgaps[h]; - } - - hit->target = target; - hit->strand = 0; - hit->count = 0; - - hit->accepted = 0; - hit->rejected = 0; - hit->aligned = 1; - hit->weak = 0; - - hit->nwscore = nwscore; - hit->nwdiff = nwalignmentlength - nwmatches; - hit->nwgaps = nwgaps; - hit->nwindels = nwalignmentlength - nwmatches - nwmismatches; - hit->nwalignmentlength = nwalignmentlength; - hit->nwid = 100.0 * (nwalignmentlength - hit->nwdiff) / - nwalignmentlength; - hit->nwalignment = nwcigar; - hit->matches = nwalignmentlength - hit->nwdiff; - hit->mismatches = hit->nwdiff - hit->nwindels; - - long dseqlen = db_getsequencelen(target); - hit->shortest = MIN(si->qseqlen, dseqlen); - hit->longest = MAX(si->qseqlen, dseqlen); - - /* trim alignment, compute numbers excluding terminal gaps */ - align_trim(hit); - - /* test accept/reject criteria after alignment */ - if (opt_acceptall || search_acceptable_aligned(si, hit)) - finalhits[si->accepts++] = *hit; - } - - /* sort hits */ - qsort(finalhits, si->accepts, - sizeof(struct hit), allpairs_hit_compare); - } - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* lock mutex for update of global data and output */ - pthread_mutex_lock(&mutex_output); -#else - todo -#endif - /* output results */ - allpairs_output_results(si->accepts, - finalhits, - si->query_head, - si->qseqlen, - si->qsequence, - 0); - - /* update stats */ - if (si->accepts) - qmatches++; - - /* show progress */ - progress += seqcount - query_no - 1; - progress_update(progress); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); - -#else - todo -#endif - - /* free memory for alignment strings */ - for(int i=0; i < si->hit_count; i++) - if (si->hits[i].aligned) - free(si->hits[i].nwalignment); - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); -#else - todo -#endif - cont = 0; - } - } - - free(finalhits); - - free(pcigar); - free(pgaps); - free(pmismatches); - free(pmatches); - free(paligned); - free(pscores); - free(pseqnos); - - search16_exit(si->s); - - nw_exit(nw); - - free(scorematrix); - - free(si->hits); -} - -void * allpairs_thread_worker(void * vp) -{ - long t = (long) vp; - allpairs_thread_run(t); - return 0; -} - -void allpairs_thread_worker_run() -{ - /* initialize threads, start them, join them and return */ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* init and create worker threads, put them into stand-by mode */ - for(int t=0; t, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* global constants/data, no need for synchronization */ +static int seqcount; /* number of database sequences */ + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + +/* global data protected by mutex */ +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; +static pthread_attr_t attr; +static pthread_t * pthread; + +#endif + +static int qmatches; +static int queries; +static long progress = 0; +static FILE * fp_alnout = 0; +static FILE * fp_samout = 0; +static FILE * fp_userout = 0; +static FILE * fp_blast6out = 0; +static FILE * fp_uc = 0; +static FILE * fp_fastapairs = 0; +static FILE * fp_matched = 0; +static FILE * fp_notmatched = 0; + +inline int allpairs_hit_compare_typed(struct hit * x, struct hit * y) +{ + // high id, then low id + // early target, then late target + + if (x->id > y->id) + return -1; + else + if (x->id < y->id) + return +1; + else + if (x->target < y->target) + return -1; + else + if (x->target > y->target) + return +1; + else + return 0; +} + +int allpairs_hit_compare(const void * a, const void * b) +{ + return allpairs_hit_compare_typed((struct hit *) a, (struct hit *) b); +} + +void allpairs_output_results(int hit_count, + struct hit * hits, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ + /* show results */ + long toreport = MIN(opt_maxhits, hit_count); + + if (fp_alnout) + results_show_alnout(fp_alnout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_samout) + results_show_samout(fp_samout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (toreport) + { + double top_hit_id = hits[0].id; + + for(int t = 0; t < toreport; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + if (fp_fastapairs) + results_show_fastapairs_one(fp_fastapairs, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_uc) + if ((t==0) || opt_uc_allhits) + results_show_uc_one(fp_uc, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + } + else if (opt_output_no_hits) + { + if (fp_uc) + results_show_uc_one(fp_uc, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + + if (hit_count) + { + if (opt_matched) + { + fasta_print(fp_matched, + query_head, + qsequence, + qseqlen); + } + } + else + { + if (opt_notmatched) + { + fasta_print(fp_notmatched, + query_head, + qsequence, + qseqlen); + } + } +} + +void allpairs_thread_run(long t) +{ + struct searchinfo_s sia; + + struct searchinfo_s * si = & sia; + + si->strand = 0; + si->query_head_alloc = 0; + si->seq_alloc = 0; + si->kmersamplecount = 0; + si->kmers = 0; + si->m = 0; + si->finalized = 0; + + si->hits = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); + + struct nwinfo_s * nw = nw_init(); + + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + + LinearMemoryAligner lma; + + long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); + + lma.set_parameters(scorematrix, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + /* allocate memory for alignment results */ + unsigned int maxhits = seqcount; + unsigned int * pseqnos = + (unsigned int *) xmalloc(sizeof(unsigned int) * maxhits); + CELL * pscores = + (CELL*) xmalloc(sizeof(CELL) * maxhits); + unsigned short * paligned = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + unsigned short * pmatches = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + unsigned short * pmismatches = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + unsigned short * pgaps = + (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); + char** pcigar = (char**) xmalloc(sizeof(char*) * maxhits); + + struct hit * finalhits + = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); + + bool cont = 1; + + while (cont) + { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_lock(&mutex_input); + //#else assume 1 thread +#endif + int query_no = queries; + + if (query_no < seqcount) + { + queries++; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); + //#else assume 1 thread +#endif + /* init search info */ + si->query_no = query_no; + si->qsize = db_getabundance(query_no); + si->query_head_len = db_getheaderlen(query_no); + si->query_head = db_getheader(query_no); + si->qseqlen = db_getsequencelen(query_no); + si->qsequence = db_getsequence(query_no); + si->rejects = 0; + si->accepts = 0; + si->hit_count = 0; + + for(int target = si->query_no + 1; + target < seqcount; target++) + { + if (opt_acceptall || search_acceptable_unaligned(si, target)) + pseqnos[si->hit_count++] = target; + } + + if (si->hit_count) + { + /* perform alignments */ + + search16_qprep(si->s, si->qsequence, si->qseqlen); + + search16(si->s, + si->hit_count, + pseqnos, + pscores, + paligned, + pmatches, + pmismatches, + pgaps, + pcigar); + + /* convert to hit structure */ + for (int h = 0; h < si->hit_count; h++) + { + struct hit * hit = si->hits + h; + + unsigned int target = pseqnos[h]; + long nwscore = pscores[h]; + + char * nwcigar; + long nwalignmentlength; + long nwmatches; + long nwmismatches; + long nwgaps; + + if (nwscore == SHRT_MAX) + { + /* In case the SIMD aligner cannot align, + perform a new alignment with the + linear memory aligner */ + + char * tseq = db_getsequence(target); + long tseqlen = db_getsequencelen(target); + + if (pcigar[h]) + free(pcigar[h]); + + nwcigar = xstrdup(lma.align(si->qsequence, + tseq, + si->qseqlen, + tseqlen)); + lma.alignstats(nwcigar, + si->qsequence, + tseq, + & nwscore, + & nwalignmentlength, + & nwmatches, + & nwmismatches, + & nwgaps); + } + else + { + nwcigar = pcigar[h]; + nwalignmentlength = paligned[h]; + nwmatches = pmatches[h]; + nwmismatches = pmismatches[h]; + nwgaps = pgaps[h]; + } + + hit->target = target; + hit->strand = 0; + hit->count = 0; + + hit->accepted = 0; + hit->rejected = 0; + hit->aligned = 1; + hit->weak = 0; + + hit->nwscore = nwscore; + hit->nwdiff = nwalignmentlength - nwmatches; + hit->nwgaps = nwgaps; + hit->nwindels = nwalignmentlength - nwmatches - nwmismatches; + hit->nwalignmentlength = nwalignmentlength; + hit->nwid = 100.0 * (nwalignmentlength - hit->nwdiff) / + nwalignmentlength; + hit->nwalignment = nwcigar; + hit->matches = nwalignmentlength - hit->nwdiff; + hit->mismatches = hit->nwdiff - hit->nwindels; + + long dseqlen = db_getsequencelen(target); + hit->shortest = MIN(si->qseqlen, dseqlen); + hit->longest = MAX(si->qseqlen, dseqlen); + + /* trim alignment, compute numbers excluding terminal gaps */ + align_trim(hit); + + /* test accept/reject criteria after alignment */ + if (opt_acceptall || search_acceptable_aligned(si, hit)) + finalhits[si->accepts++] = *hit; + } + + /* sort hits */ + qsort(finalhits, si->accepts, + sizeof(struct hit), allpairs_hit_compare); + } + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + /* lock mutex for update of global data and output */ + pthread_mutex_lock(&mutex_output); + //#else assume 1 thread +#endif + /* output results */ + allpairs_output_results(si->accepts, + finalhits, + si->query_head, + si->qseqlen, + si->qsequence, + 0); + + /* update stats */ + if (si->accepts) + qmatches++; + + /* show progress */ + progress += seqcount - query_no - 1; + progress_update(progress); + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_mutex_unlock(&mutex_output); +#endif + /* free memory for alignment strings */ + for(int i=0; i < si->hit_count; i++) + if (si->hits[i].aligned) + free(si->hits[i].nwalignment); + } + else + { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); + //#else assume 1 thread +#endif + cont = 0; + } + } + + free(finalhits); + + free(pcigar); + free(pgaps); + free(pmismatches); + free(pmatches); + free(paligned); + free(pscores); + free(pseqnos); + + search16_exit(si->s); + + nw_exit(nw); + + free(scorematrix); + + free(si->hits); +} + +void * allpairs_thread_worker(void * vp) +{ + long t = (intptr_t) vp; + allpairs_thread_run(t); + return 0; +} + +void allpairs_thread_worker_run() +{ + /* initialize threads, start them, join them and return */ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* init and create worker threads, put them into stand-by mode */ + for(int t=0; t, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#if defined(_WIN32) -#include -#include -#endif - -#include "vsearch.h" - - -unsigned long arch_get_memused() -{ - struct rusage r_usage; - getrusage(RUSAGE_SELF, & r_usage); - -#if defined (__APPLE__) || (__MACH__) - /* Mac: ru_maxrss gives the size in bytes */ - return r_usage.ru_maxrss; -#elif (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - /* Linux: ru_maxrss gives the size in kilobytes */ - return r_usage.ru_maxrss * 1024; -#else - PROCESS_MEMORY_COUNTERS info; - GetProcessMemoryInfo( GetCurrentProcess( ), &info, sizeof(info) ); - return (size_t)info.PeakWorkingSetSize; -#endif -} - -unsigned long arch_get_memtotal() -{ -#if defined(_SC_PHYS_PAGES) && defined(_SC_PAGESIZE) - - long phys_pages = sysconf(_SC_PHYS_PAGES); - long pagesize = sysconf(_SC_PAGESIZE); - if ((phys_pages == -1) || (pagesize == -1)) - fatal("Cannot determine amount of RAM"); - return pagesize * phys_pages; - -#elif defined(__APPLE__) - - int mib [] = { CTL_HW, HW_MEMSIZE }; - int64_t ram = 0; - size_t length = sizeof(ram); - if(sysctl(mib, 2, &ram, &length, NULL, 0) == -1) - fatal("Cannot determine amount of RAM"); - return ram; - -#else - - struct sysinfo si; - if (sysinfo(&si)) - fatal("Cannot determine amount of RAM"); - return si.totalram * si.mem_unit; - -#endif -} +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +unsigned long arch_get_memused() +{ +#if defined (__APPLE__) || (__MACH__) + /* Mac: ru_maxrss gives the size in bytes */ + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + + return r_usage.ru_maxrss; +#elif (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* Linux: ru_maxrss gives the size in kilobytes */ + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + return r_usage.ru_maxrss * 1024; +#elif defined (_WIN32) + MEMORYSTATUSEX status; + status.dwLength = sizeof(status); + GlobalMemoryStatusEx(&status); + return (size_t)status.ullAvailPhys; +#else + fatal("Cannot determine amount of RAM used"); + return 0; +#endif +} + +unsigned long arch_get_memtotal() +{ +#if defined(__APPLE__) + + int mib [] = { CTL_HW, HW_MEMSIZE }; + int64_t ram = 0; + size_t length = sizeof(ram); + if(sysctl(mib, 2, &ram, &length, NULL, 0) == -1) + fatal("Cannot determine amount of RAM"); + return ram; + +#elif defined(_SC_PHYS_PAGES) && defined(_SC_PAGESIZE) + + long phys_pages = sysconf(_SC_PHYS_PAGES); + long pagesize = sysconf(_SC_PAGESIZE); + if ((phys_pages == -1) || (pagesize == -1)) + fatal("Cannot determine amount of RAM"); + return pagesize * phys_pages; +#elif defined (_WIN32) + MEMORYSTATUSEX status; + status.dwLength = sizeof(status); + GlobalMemoryStatusEx(&status); + return (size_t)status.ullTotalPhys; +#else + + struct sysinfo si; + if (sysinfo(&si)) + fatal("Cannot determine amount of RAM"); + return si.totalram * si.mem_unit; + + +#endif +} diff --git a/source/vsearch_src/arch.h b/source/vsearch_src/arch.h old mode 100644 new mode 100755 index dee7cc97..235349e1 --- a/source/vsearch_src/arch.h +++ b/source/vsearch_src/arch.h @@ -1,4 +1,3 @@ - /* VSEARCH: a versatile open source tool for metagenomics @@ -61,4 +60,3 @@ unsigned long arch_get_memused(); unsigned long arch_get_memtotal(); - diff --git a/source/vsearch_src/bitmap.cc b/source/vsearch_src/bitmap.cc old mode 100644 new mode 100755 diff --git a/source/vsearch_src/bitmap.h b/source/vsearch_src/bitmap.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/chimera.cc b/source/vsearch_src/chimera.cc old mode 100644 new mode 100755 index f5e16f71..a3adf6c4 --- a/source/vsearch_src/chimera.cc +++ b/source/vsearch_src/chimera.cc @@ -1,1634 +1,1570 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* - This code implements the method described in this paper: - - Robert C. Edgar, Brian J. Haas, Jose C. Clemente, Christopher Quince - and Rob Knight (2011) - UCHIME improves sensitivity and speed of chimera detection - Bioinformatics, 27, 16, 2194-2200 - http://dx.doi.org/10.1093/bioinformatics/btr381 -*/ - - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - -static pthread_attr_t attr; -static pthread_t * pthread; - -/* mutexes and global data protected by mutex */ -static pthread_mutex_t mutex_input; -static pthread_mutex_t mutex_output; - -#else - - todo - -#endif - -static unsigned int seqno = 0; -static unsigned long progress = 0; -static int chimera_count = 0; -static int nonchimera_count = 0; -static FILE * fp_chimeras = 0; -static FILE * fp_nonchimeras = 0; -static FILE * fp_uchimealns = 0; -static FILE * fp_uchimeout = 0; -static FILE * fp_borderline = 0; -static fasta_handle query_fasta_h; - -/* global constants/data, no need for synchronization */ -const int parts = 4; -const int few = 1; -const int maxcandidates = few * parts; -const int rejects = 64; -const double chimera_id = 0.55; -static int tophits; - -#define ALT -//#define ALT2 - -/* information for each query sequence to be checked */ -struct chimera_info_s -{ - int query_alloc; /* the longest query sequence allocated memory for */ - int head_alloc; /* the longest header allocated memory for */ - - int query_no; - char * query_head; - int query_head_len; - int query_size; - char * query_seq; - int query_len; - - struct searchinfo_s si[parts]; - - unsigned int cand_list[maxcandidates]; - int cand_count; - - struct s16info_s * s; - CELL snwscore[maxcandidates]; - unsigned short snwalignmentlength[maxcandidates]; - unsigned short snwmatches[maxcandidates]; - unsigned short snwmismatches[maxcandidates]; - unsigned short snwgaps[maxcandidates]; - long nwscore[maxcandidates]; - long nwalignmentlength[maxcandidates]; - long nwmatches[maxcandidates]; - long nwmismatches[maxcandidates]; - long nwgaps[maxcandidates]; - char * nwcigar[maxcandidates]; - - int match_size; - int * match; - int * smooth; - int * maxsmooth; - - int best_parents[2]; - - int best_target; - char * best_cigar; - - int * maxi; - char * paln[2]; - char * qaln; - char * diffs; - char * votes; - char * model; - char * ignore; - - struct hit * all_hits; -}; - -static struct chimera_info_s * cia; - -void realloc_arrays(struct chimera_info_s * ci) -{ - int maxhlen = ci->query_head_len; - if (maxhlen > ci->head_alloc) - { - ci->head_alloc = maxhlen; - ci->query_head = (char*) xrealloc(ci->query_head, maxhlen + 1); - } - - /* realloc arrays based on query length */ - - int maxqlen = ci->query_len; - if (maxqlen > ci->query_alloc) - { - ci->query_alloc = maxqlen; - - ci->query_seq = (char*) xrealloc(ci->query_seq, maxqlen + 1); - - for(int i=0; i < parts; i++) - { - int maxpartlen = (maxqlen + parts - 1) / parts; - ci->si[i].qsequence = (char*) xrealloc(ci->si[i].qsequence, - maxpartlen + 1); - } - - ci->maxi = (int *) xrealloc(ci->maxi, (maxqlen + 1) * sizeof(int)); - ci->maxsmooth = (int*) xrealloc(ci->maxsmooth, maxqlen * sizeof(int)); - ci->match = (int*) xrealloc(ci->match, - maxcandidates * maxqlen * sizeof(int)); - ci->smooth = (int*) xrealloc(ci->smooth, - maxcandidates * maxqlen * sizeof(int)); - - int maxalnlen = maxqlen + 2 * db_getlongestsequence(); - ci->paln[0] = (char*) xrealloc(ci->paln[0], maxalnlen+1); - ci->paln[1] = (char*) xrealloc(ci->paln[1], maxalnlen+1); - ci->qaln = (char*) xrealloc(ci->qaln, maxalnlen+1); - ci->diffs = (char*) xrealloc(ci->diffs, maxalnlen+1); - ci->votes = (char*) xrealloc(ci->votes, maxalnlen+1); - ci->model = (char*) xrealloc(ci->model, maxalnlen+1); - ci->ignore = (char*) xrealloc(ci->ignore, maxalnlen+1); - } -} - - -int find_best_parents(struct chimera_info_s * ci) -{ - ci->best_parents[0] = -1; - ci->best_parents[1] = -1; - - /* find the positions with matches for each potential parent */ - - char * qseq = ci->query_seq; - - memset(ci->match, 0, ci->cand_count * ci->query_len * sizeof(int)); - - for(int i=0; i < ci->cand_count; i++) - { - char * tseq = db_getsequence(ci->cand_list[i]); - - int qpos = 0; - int tpos = 0; - - char * p = ci->nwcigar[i]; - char * e = p + strlen(p); - - while (p < e) - { - int run = 1; - int scanlength = 0; - sscanf(p, "%d%n", &run, &scanlength); - p += scanlength; - char op = *p++; - switch (op) - { - case 'M': - for(int k=0; kmatch[i * ci->query_len + qpos] = 1; - qpos++; - tpos++; - } - break; - - case 'I': - tpos += run; - break; - - case 'D': - qpos += run; - break; - } - } - } - - /* Compute smoothed identity score in a window for each candidate, */ - /* and record max smoothed score for each position among candidates. */ - - memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); - - const int window = 32; - - for(int i = 0; i < ci->cand_count; i++) - { - int sum = 0; - for(int qpos = 0; qpos < ci->query_len; qpos++) - { - int z = i * ci->query_len + qpos; - sum += ci->match[z]; - if (qpos >= window) - sum -= ci->match[z-window]; - if (qpos >= window-1) - { - ci->smooth[z] = sum; - if (ci->smooth[z] > ci->maxsmooth[qpos]) - ci->maxsmooth[qpos] = ci->smooth[z]; - } - } - } - - /* find first parent */ - - int wins[ci->cand_count]; - - memset(wins, 0, ci->cand_count * sizeof(int)); - - for(int qpos = window-1; qpos < ci->query_len; qpos++) - { - if (ci->maxsmooth[qpos] != 0) - for(int i=0; i < ci->cand_count; i++) - { - int z = i * ci->query_len + qpos; - if (ci->smooth[z] == ci->maxsmooth[qpos]) - wins[i]++; - } - } - - int best1_w = -1; - int best1_i = -1; - int best2_w = -1; - int best2_i = -1; - - for(int i=0; i < ci->cand_count; i++) - { - int w = wins[i]; - if (w > best1_w) - { - best1_w = w; - best1_i = i; - } - } - - if (best1_w >= 0) - { - /* find second parent */ - - /* wipe out matches in positions covered by first parent */ - - for(int qpos = window - 1; qpos < ci->query_len; qpos++) - { - int z = best1_i * ci->query_len + qpos; - if (ci->smooth[z] == ci->maxsmooth[qpos]) - { - for(int i = qpos + 1 - window; i <= qpos; i++) - for(int j = 0; j < ci->cand_count; j++) - ci->match[j * ci->query_len + i] = 0; - } - } - - /* - recompute smoothed identity over window, and record max smoothed - score for each position among remaining candidates - */ - - memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); - - for(int i = 0; i < ci->cand_count; i++) - { - if (i != best1_i) - { - int sum = 0; - for(int qpos = 0; qpos < ci->query_len; qpos++) - { - int z = i * ci->query_len + qpos; - sum += ci->match[z]; - if (qpos >= window) - sum -= ci->match[z-window]; - if (qpos >= window-1) - { - ci->smooth[z] = sum; - if (ci->smooth[z] > ci->maxsmooth[qpos]) - ci->maxsmooth[qpos] = ci->smooth[z]; - } - } - } - } - - /* find second parent */ - - memset(wins, 0, ci->cand_count * sizeof(int)); - - for(int qpos = window-1; qpos < ci->query_len; qpos++) - { - if (ci->maxsmooth[qpos] != 0) - for(int i=0; i < ci->cand_count; i++) - if (i != best1_i) - { - int z = i * ci->query_len + qpos; - if (ci->smooth[z] == ci->maxsmooth[qpos]) - wins[i]++; - } - } - - for(int i=0; i < ci->cand_count; i++) - { - int w = wins[i]; - if (w > best2_w) - { - best2_w = w; - best2_i = i; - } - } - } - - ci->best_parents[0] = best1_i; - ci->best_parents[1] = best2_i; - - return (best1_w >= 0) && (best2_w >= 0); -} - -int eval_parents(struct chimera_info_s * ci) -{ - int status = 1; - - /* create msa */ - - /* find max insertions in front of each position in the query sequence */ - memset(ci->maxi, 0, (ci->query_len + 1) * sizeof(int)); - - for(int j=0; j<2; j++) - { - char * p = ci->nwcigar[ci->best_parents[j]]; - char * e = p + strlen(p); - int pos = 0; - while (p < e) - { - int run = 1; - int scanlength = 0; - sscanf(p, "%d%n", &run, &scanlength); - p += scanlength; - char op = *p++; - switch (op) - { - case 'M': - case 'D': - pos += run; - break; - - case 'I': - if (run > ci->maxi[pos]) - ci->maxi[pos] = run; - break; - } - } - } - - /* find total alignment length */ - int alnlen = 0; - for(int i=0; i < ci->query_len+1; i++) - alnlen += ci->maxi[i]; - alnlen += ci->query_len; - - /* fill in alignment string for query */ - - char * q = ci->qaln; - int qpos = 0; - for (int i=0; i < ci->query_len; i++) - { - for (int j=0; j < ci->maxi[i]; j++) - *q++ = '-'; - *q++ = ci->query_seq[qpos++]; - } - for (int j=0; j < ci->maxi[ci->query_len]; j++) - *q++ = '-'; - *q = 0; - - /* fill in alignment strings for the 2 parents */ - - for(int j=0; j<2; j++) - { - int cand = ci->best_parents[j]; - int target_seqno = ci->cand_list[cand]; - char * target_seq = db_getsequence(target_seqno); - - int inserted = 0; - qpos = 0; - int tpos = 0; - - char * t = ci->paln[j]; - - char * p = ci->nwcigar[cand]; - char * e = p + strlen(p); - while (p < e) - { - int run = 1; - int scanlength = 0; - sscanf(p, "%d%n", &run, &scanlength); - p += scanlength; - char op = *p++; - - if (op == 'I') - { - for(int x=0; x < ci->maxi[qpos]; x++) - { - if (x < run) - *t++ = target_seq[tpos++]; - else - *t++ = '-'; - } - inserted = 1; - } - else - { - for(int x=0; x < run; x++) - { - if (!inserted) - for(int y=0; y < ci->maxi[qpos]; y++) - *t++ = '-'; - - if (op == 'M') - *t++ = target_seq[tpos++]; - else - *t++ = '-'; - - qpos++; - inserted = 0; - } - } - } - - /* add any gaps at the end */ - - if (!inserted) - for(int x=0; x < ci->maxi[qpos]; x++) - *t++ = '-'; - - /* end of sequence string */ - *t = 0; - } - - memset(ci->ignore, 0, alnlen); - - for(int i = 0; i < alnlen; i++) - { - char qsym = chrmap_4bit[(int)(ci->qaln [i])]; - char p1sym = chrmap_4bit[(int)(ci->paln[0][i])]; - char p2sym = chrmap_4bit[(int)(ci->paln[1][i])]; - - /* mark positions to ignore in voting */ - - /* ignore gap positions and those next to the gap */ - if ((!qsym) || (!p1sym) || (!p2sym)) - { - ci->ignore[i] = 1; - if (i>0) - ci->ignore[i-1] = 1; - if (iignore[i+1] = 1; - } - - /* ignore ambigous symbols */ - if ((qsym>4) || (p1sym>4) || (p2sym>4)) - ci->ignore[i] = 1; - - /* lower case parent symbols that differ from query */ - - if (p1sym && (p1sym != qsym)) - ci->paln[0][i] = tolower(ci->paln[0][i]); - - if (p2sym && (p2sym != qsym)) - ci->paln[1][i] = tolower(ci->paln[1][i]); - - /* compute diffs */ - - char diff; - - if (qsym && p1sym && p2sym) - { - if (p1sym == p2sym) - { - if (qsym == p1sym) - diff = ' '; - else - diff = 'N'; - } - else - { - if (qsym == p1sym) - diff = 'A'; - else if (qsym == p2sym) - diff = 'B'; - else - diff = '?'; - } - } - else - diff = ' '; - - ci->diffs[i] = diff; - } - - ci->diffs[alnlen] = 0; - - /* compute score */ - - int sumA = 0; - int sumB = 0; - int sumN = 0; - - for (int i = 0; i < alnlen; i++) - if (!ci->ignore[i]) - { - char diff = ci->diffs[i]; - - if (diff == 'A') - sumA++; - else if (diff == 'B') - sumB++; - else if (diff != ' ') - sumN++; - } - - int left_n = 0; - int left_a = 0; - int left_y = 0; - int right_n = sumA; - int right_a = sumN; - int right_y = sumB; - - double best_h = -1; - int best_i = -1; - int best_reverse = 0; - - int best_left_y = 0; - int best_right_y = 0; - int best_left_n = 0; - int best_right_n = 0; - int best_left_a = 0; - int best_right_a = 0; - - for (int i=0; iignore[i]) - { - char diff = ci->diffs[i]; - if (diff != ' ') - { - if (diff == 'A') - { - left_y++; - right_n--; - } - else if (diff == 'B') - { - left_n++; - right_y--; - } - else - { - left_a++; - right_a--; - } - - double left_h, right_h, h; - - if ((left_y > left_n) && (right_y > right_n)) - { - left_h = left_y / (opt_xn * (left_n + opt_dn) + left_a); - right_h = right_y / (opt_xn * (right_n + opt_dn) + right_a); - h = left_h * right_h; - - if (h > best_h) - { - best_reverse = 0; - best_h = h; - best_i = i; - best_left_n = left_n; - best_left_y = left_y; - best_left_a = left_a; - best_right_n = right_n; - best_right_y = right_y; - best_right_a = right_a; - } - } - else if ((left_n > left_y) && (right_n > right_y)) - { - /* swap left/right and yes/no */ - - left_h = left_n / (opt_xn * (left_y + opt_dn) + left_a); - right_h = right_n / (opt_xn * (right_y + opt_dn) + right_a); - h = left_h * right_h; - - if (h > best_h) - { - best_reverse = 1; - best_h = h; - best_i = i; - best_left_n = left_y; - best_left_y = left_n; - best_left_a = left_a; - best_right_n = right_y; - best_right_y = right_n; - best_right_a = right_a; - } - } - } - } - } - - if (best_h >= 0.0) - { - status = 2; - - /* flip A and B if necessary */ - - if (best_reverse) - for(int i = 0; i < alnlen; i++) - { - char diff = ci->diffs[i]; - if (diff == 'A') - ci->diffs[i] = 'B'; - else if (diff == 'B') - ci->diffs[i] = 'A'; - } - - /* fill in votes and model */ - - for(int i = 0; i < alnlen; i++) - { - char m = i <= best_i ? 'A' : 'B'; - ci->model[i] = m; - - char v = ' '; - if (!ci->ignore[i]) - { - char d = ci->diffs[i]; - - if ((d == 'A') || (d == 'B')) - { - if (d == m) - v = '+'; - else - v = '!'; - } - else if ((d == 'N') || (d == '?')) - { - v = '0'; - } - } - ci->votes[i] = v; - - /* lower case diffs for no votes */ - if (v == '!') - ci->diffs[i] = tolower(ci->diffs[i]); - } - - /* fill in crossover region */ - - for(int i = best_i + 1; i < alnlen; i++) - if ((ci->diffs[i] == ' ') || (ci->diffs[i] == 'A')) - ci->model[i] = 'x'; - else - break; - - ci->votes[alnlen] = 0; - ci->model[alnlen] = 0; - - /* count matches */ - - int index_a = best_reverse ? 1 : 0; - int index_b = best_reverse ? 0 : 1; - - int match_QA = 0; - int match_QB = 0; - int match_AB = 0; - int match_QM = 0; - int cols = 0; - - for(int i = 0; i < alnlen; i++) - { - if (! ci->ignore[i]) - { - cols++; - - char qsym = chrmap_4bit[(int)(ci->qaln[i])]; - char asym = chrmap_4bit[(int)(ci->paln[index_a][i])]; - char bsym = chrmap_4bit[(int)(ci->paln[index_b][i])]; - char msym = i <= best_i ? asym : bsym; - - if (qsym == asym) - match_QA++; - - if (qsym == bsym) - match_QB++; - - if (asym == bsym) - match_AB++; - - if (qsym == msym) - match_QM++; - } - } - - int seqno_a = ci->cand_list[ci->best_parents[index_a]]; - int seqno_b = ci->cand_list[ci->best_parents[index_b]]; - - double QA = 100.0 * match_QA / cols; - double QB = 100.0 * match_QB / cols; - double AB = 100.0 * match_AB / cols; - double QT = MAX(QA, QB); - double QM = 100.0 * match_QM / cols; - double divdiff = QM - QT; - double divfrac = 100.0 * divdiff / QT; - - int sumL = best_left_n + best_left_a + best_left_y; - int sumR = best_right_n + best_right_a + best_right_y; - - if (best_h >= opt_minh) - { - status = 3; - if ((divdiff >= opt_mindiv) && - (sumL >= opt_mindiffs) && - (sumR >= opt_mindiffs)) - status = 4; - } - - /* print alignment */ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&mutex_output); -#else - - todo - -#endif - - if (opt_uchimealns && (status == 4)) - { - fprintf(fp_uchimealns, "\n"); - fprintf(fp_uchimealns, "----------------------------------------" - "--------------------------------\n"); - fprintf(fp_uchimealns, "Query (%5d nt) %s\n", - ci->query_len, ci->query_head); - fprintf(fp_uchimealns, "ParentA (%5lu nt) %s\n", - db_getsequencelen(seqno_a), - db_getheader(seqno_a)); - fprintf(fp_uchimealns, "ParentB (%5lu nt) %s\n", - db_getsequencelen(seqno_b), - db_getheader(seqno_b)); - fprintf(fp_uchimealns, "\n"); - - int width = opt_alignwidth > 0 ? opt_alignwidth : alnlen; - qpos = 0; - int p1pos = 0; - int p2pos = 0; - int rest = alnlen; - - for(int i = 0; i < alnlen; i += width) - { - /* count non-gap symbols on current line */ - - int qnt, p1nt, p2nt; - qnt = p1nt = p2nt = 0; - - int w = MIN(rest,width); - - for(int j=0; jqaln[i+j] != '-') - qnt++; - if (ci->paln[0][i+j] != '-') - p1nt++; - if (ci->paln[1][i+j] != '-') - p2nt++; - } - - if (! best_reverse) - { - fprintf(fp_uchimealns, "A %5d %.*s %d\n", - p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); - fprintf(fp_uchimealns, "Q %5d %.*s %d\n", - qpos+1, w, ci->qaln+i, qpos+qnt); - fprintf(fp_uchimealns, "B %5d %.*s %d\n", - p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); - } - else - { - fprintf(fp_uchimealns, "A %5d %.*s %d\n", - p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); - fprintf(fp_uchimealns, "Q %5d %.*s %d\n", - qpos+1, w, ci->qaln+i, qpos+qnt); - fprintf(fp_uchimealns, "B %5d %.*s %d\n", - p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); - } - - fprintf(fp_uchimealns, "Diffs %.*s\n", w, ci->diffs+i); - fprintf(fp_uchimealns, "Votes %.*s\n", w, ci->votes+i); - fprintf(fp_uchimealns, "Model %.*s\n", w, ci->model+i); - fprintf(fp_uchimealns, "\n"); - - qpos += qnt; - p1pos += p1nt; - p2pos += p2nt; - rest -= width; - } - - fprintf(fp_uchimealns, "Ids. QA %.1f%%, QB %.1f%%, AB %.1f%%, " - "QModel %.1f%%, Div. %+.1f%%\n", - QA, QB, AB, QM, divfrac); - - fprintf(fp_uchimealns, "Diffs Left %d: N %d, A %d, Y %d (%.1f%%); " - "Right %d: N %d, A %d, Y %d (%.1f%%), Score %.4f\n", - sumL, best_left_n, best_left_a, best_left_y, - 100.0 * best_left_y / sumL, - sumR, best_right_n, best_right_a, best_right_y, - 100.0 * best_right_y / sumR, - best_h); - } - - if (opt_uchimeout) - { - if (opt_uchimeout5) - { - fprintf(fp_uchimeout, - "%.4f\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" - "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", - best_h, - ci->query_head, - db_getheader(seqno_a), - db_getheader(seqno_b), - QM, - QA, - QB, - AB, - QT, - best_left_y, - best_left_n, - best_left_a, - best_right_y, - best_right_n, - best_right_a, - divdiff, - status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); - } - else - { - fprintf(fp_uchimeout, - "%.4f\t%s\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" - "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", - best_h, - ci->query_head, - db_getheader(seqno_a), - db_getheader(seqno_b), - db_getheader(QA >= QB ? seqno_a : seqno_b), - QM, - QA, - QB, - AB, - QT, - best_left_y, - best_left_n, - best_left_a, - best_right_y, - best_right_n, - best_right_a, - divdiff, - status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); - } - } -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#else - - todo - -#endif - } - - return status; -} - -/* - new chimeric status: - 0: no parents, non-chimeric - 1: score < 0 (no alignment), non-chimeric - 2: score < minh, non-chimeric - 3: score >= minh, suspicious - 4: score >= minh && (divdiff >= opt_mindiv) && ..., chimeric -*/ - -void query_init(struct searchinfo_s * si) -{ - si->qsequence = 0; - si->kmers = 0; - si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); - si->kmers = (count_t *) xmalloc(db_getsequencecount() * - sizeof(count_t) + 32); - si->hit_count = 0; - si->uh = unique_init(); - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - si->nw = nw_init(); - si->m = minheap_init(tophits); -} - -void query_exit(struct searchinfo_s * si) -{ - search16_exit(si->s); - unique_exit(si->uh); - minheap_exit(si->m); - nw_exit(si->nw); - - if (si->qsequence) - free(si->qsequence); - if (si->hits) - free(si->hits); - if (si->kmers) - free(si->kmers); -} - -void partition_query(struct chimera_info_s * ci) -{ - int rest = ci->query_len; - char * p = ci->query_seq; - for (int i=0; isi + i; - - si->query_no = ci->query_no; - si->strand = 0; - si->qsize = ci->query_size; - si->query_head_len = ci->query_head_len; - si->query_head = ci->query_head; - si->qseqlen = len; - strncpy(si->qsequence, p, len); - si->qsequence[len] = 0; - - rest -= len; - p += len; - } -} - -void chimera_thread_init(struct chimera_info_s * ci) -{ - ci->query_alloc = 0; - ci->head_alloc = 0; - ci->query_head = 0; - ci->query_seq = 0; - ci->maxi = 0; - ci->maxsmooth = 0; - ci->match = 0; - ci->smooth = 0; - ci->paln[0] = 0; - ci->paln[1] = 0; - ci->qaln = 0; - ci->diffs = 0; - ci->votes = 0; - ci->model = 0; - ci->ignore = 0; - - for(int i = 0; i < parts; i++) - query_init(ci->si + i); - - ci->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); -} - -void chimera_thread_exit(struct chimera_info_s * ci) -{ - search16_exit(ci->s); - - for(int i = 0; i < parts; i++) - query_exit(ci->si + i); - - if (ci->maxsmooth) - free(ci->maxsmooth); - if (ci->match) - free(ci->match); - if (ci->smooth) - free(ci->smooth); - if (ci->diffs) - free(ci->diffs); - if (ci->votes) - free(ci->votes); - if (ci->model) - free(ci->model); - if (ci->ignore) - free(ci->ignore); - if (ci->maxi) - free(ci->maxi); - if (ci->qaln) - free(ci->qaln); - if (ci->paln[0]) - free(ci->paln[0]); - if (ci->paln[1]) - free(ci->paln[1]); - - if (ci->query_seq) - free(ci->query_seq); - if (ci->query_head) - free(ci->query_head); -} - -unsigned long chimera_thread_core(struct chimera_info_s * ci) -{ - chimera_thread_init(ci); - - struct hit * allhits_list = (struct hit *) xmalloc(maxcandidates * - sizeof(struct hit)); - - LinearMemoryAligner lma; - - long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); - - lma.set_parameters(scorematrix, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - while(1) - { - /* get next sequence */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_lock(&mutex_input); -#else - todo -#endif - - if (opt_uchime_ref) - { - if (fasta_next(query_fasta_h, ! opt_notrunclabels, - chrmap_upcase)) - { - ci->query_head_len = fasta_get_header_length(query_fasta_h); - ci->query_len = fasta_get_sequence_length(query_fasta_h); - ci->query_no = fasta_get_seqno(query_fasta_h); - ci->query_size = fasta_get_abundance(query_fasta_h); - - /* if necessary expand memory for arrays based on query length */ - realloc_arrays(ci); - - /* copy the data locally (query seq, head) */ - strcpy(ci->query_head, fasta_get_header(query_fasta_h)); - strcpy(ci->query_seq, fasta_get_sequence(query_fasta_h)); - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_input); -#else - todo -#endif - - - break; /* end while loop */ - } - } - else - { - if (seqno < db_getsequencecount()) - { - ci->query_no = seqno; - ci->query_head_len = db_getheaderlen(seqno); - ci->query_len = db_getsequencelen(seqno); - ci->query_size = db_getabundance(seqno); - - /* if necessary expand memory for arrays based on query length */ - realloc_arrays(ci); - - strcpy(ci->query_head, db_getheader(seqno)); - strcpy(ci->query_seq, db_getsequence(seqno)); - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_input); -#else - todo -#endif - break; /* end while loop */ - } - } -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_input); - -#else - todo -#endif - - int status = 0; - - /* partition query */ - partition_query(ci); - - /* perform searches and collect candidate parents */ - ci->cand_count = 0; - int allhits_count = 0; - - for (int i=0; isi+i); - search_joinhits(ci->si+i, 0, & hits, & hit_count); - for(int j=0; jcand_count; k++) - if (ci->cand_list[k] == target) - break; - - if (k == ci->cand_count) - ci->cand_list[ci->cand_count++] = target; - - /* deallocate cigar */ - if (allhits_list[i].nwalignment) - free(allhits_list[i].nwalignment); - } - - - /* align full query to each candidate */ - - search16_qprep(ci->s, ci->query_seq, ci->query_len); - - search16(ci->s, - ci->cand_count, - ci->cand_list, - ci->snwscore, - ci->snwalignmentlength, - ci->snwmatches, - ci->snwmismatches, - ci->snwgaps, - ci->nwcigar); - - for(int i=0; i < ci->cand_count; i++) - { - long target = ci->cand_list[i]; - long nwscore = ci->snwscore[i]; - char * nwcigar; - long nwalignmentlength; - long nwmatches; - long nwmismatches; - long nwgaps; - - if (nwscore == SHRT_MAX) - { - /* In case the SIMD aligner cannot align, - perform a new alignment with the - linear memory aligner */ - - char * tseq = db_getsequence(target); - long tseqlen = db_getsequencelen(target); - - if (ci->nwcigar[i]) - free(ci->nwcigar[i]); - - nwcigar = xstrdup(lma.align(ci->query_seq, - tseq, - ci->query_len, - tseqlen)); - lma.alignstats(nwcigar, - ci->query_seq, - tseq, - & nwscore, - & nwalignmentlength, - & nwmatches, - & nwmismatches, - & nwgaps); - - ci->nwcigar[i] = nwcigar; - ci->nwscore[i] = nwscore; - ci->nwalignmentlength[i] = nwalignmentlength; - ci->nwmatches[i] = nwmatches; - ci->nwmismatches[i] = nwmismatches; - ci->nwgaps[i] = nwgaps; - } - else - { - ci->nwscore[i] = ci->snwscore[i]; - ci->nwalignmentlength[i] = ci->snwalignmentlength[i]; - ci->nwmatches[i] = ci->snwmatches[i]; - ci->nwmismatches[i] = ci->snwmismatches[i]; - ci->nwgaps[i] = ci->snwgaps[i]; - } - } - - - /* find the best pair of parents, then compute score for them */ - - if (find_best_parents(ci)) - status = eval_parents(ci); - else - status = 0; - - /* output results */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_lock(&mutex_output); -#else - todo -#endif - if (status == 4) - { - chimera_count++; - - if (opt_chimeras) - { - fprint_fasta_hdr_only(fp_chimeras, ci->query_head); - fprint_fasta_seq_only(fp_chimeras, ci->query_seq, - ci->query_len, opt_fasta_width); - } - - -#ifdef ALT2 - if (opt_uchime_denovo) - dbindex_addsequence(seqno); -#endif - } - - if (status == 3) - { - if (opt_borderline) - { - fprint_fasta_hdr_only(fp_borderline, ci->query_head); - fprint_fasta_seq_only(fp_borderline, ci->query_seq, - ci->query_len, opt_fasta_width); - } - } - - if (status < 3) - { - nonchimera_count++; - - /* output no parents, no chimeras */ - if ((status < 2) && opt_uchimeout) - { - if (opt_uchimeout5) - fprintf(fp_uchimeout, - "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*" - "\t0\t0\t0\t0\t0\t0\t*\tN\n", - ci->query_head); - else - fprintf(fp_uchimeout, - "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*\t*" - "\t0\t0\t0\t0\t0\t0\t*\tN\n", - ci->query_head); - } - -#ifndef ALT - /* uchime_denovo: add non-chimeras to db */ - if (opt_uchime_denovo) - dbindex_addsequence(seqno); -#endif - - if (opt_nonchimeras) - { - int size = ci->query_size; - - if (opt_relabel_sha1 || opt_relabel_md5) - { - char * seq = ci->query_seq; - int len = ci->query_len; - - fprintf(fp_nonchimeras, ">"); - - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp_nonchimeras, seq, len); - else - fprint_seq_digest_md5(fp_nonchimeras, seq, len); - - if (opt_sizeout) - fprintf(fp_nonchimeras, ";size=%d;\n", size); - else - fprintf(fp_nonchimeras, "\n"); - - } - else if (opt_relabel) - { - if (opt_sizeout) - fprintf(fp_nonchimeras, ">%s%d;size=%d;\n", - opt_relabel, nonchimera_count, size); - else - fprintf(fp_nonchimeras, ">%s%d\n", - opt_relabel, nonchimera_count); - } - else - fprintf(fp_nonchimeras, ">%s\n", ci->query_head); - - fprint_fasta_seq_only(fp_nonchimeras, ci->query_seq, - ci->query_len, opt_fasta_width); - } - } - - for (int i=0; i < ci->cand_count; i++) - if (ci->nwcigar[i]) - free(ci->nwcigar[i]); - - if (opt_uchime_ref) - progress = fasta_get_position(query_fasta_h); - else - progress += db_getsequencelen(seqno); - - progress_update(progress); - - seqno++; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#else - todo -#endif - } - - if (allhits_list) - free(allhits_list); - - chimera_thread_exit(ci); - - free(scorematrix); - - return 0; -} - -void * chimera_thread_worker(void * vp) -{ - return (void *) chimera_thread_core(cia + (long) vp); -} - -void chimera_threads_run() -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* create worker threads */ - for(long t=0; t, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* + This code implements the method described in this paper: + + Robert C. Edgar, Brian J. Haas, Jose C. Clemente, Christopher Quince + and Rob Knight (2011) + UCHIME improves sensitivity and speed of chimera detection + Bioinformatics, 27, 16, 2194-2200 + http://dx.doi.org/10.1093/bioinformatics/btr381 +*/ + +/* global constants/data, no need for synchronization */ +const int parts = 4; +const int few = 4; +const int maxcandidates = few * parts; +const int rejects = 16; +const double chimera_id = 0.55; +static int tophits; +static fasta_handle query_fasta_h; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + +/* mutexes and global data protected by mutex */ +static pthread_attr_t attr; +static pthread_t * pthread; +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; + +#endif + +static unsigned int seqno = 0; +static unsigned long progress = 0; +static int chimera_count = 0; +static int nonchimera_count = 0; +static FILE * fp_chimeras = 0; +static FILE * fp_nonchimeras = 0; +static FILE * fp_uchimealns = 0; +static FILE * fp_uchimeout = 0; +static FILE * fp_borderline = 0; + +/* information for each query sequence to be checked */ +struct chimera_info_s +{ + int query_alloc; /* the longest query sequence allocated memory for */ + int head_alloc; /* the longest header allocated memory for */ + + int query_no; + char * query_head; + int query_head_len; + int query_size; + char * query_seq; + int query_len; + + struct searchinfo_s si[parts]; + + unsigned int cand_list[maxcandidates]; + int cand_count; + + struct s16info_s * s; + CELL snwscore[maxcandidates]; + unsigned short snwalignmentlength[maxcandidates]; + unsigned short snwmatches[maxcandidates]; + unsigned short snwmismatches[maxcandidates]; + unsigned short snwgaps[maxcandidates]; + long nwscore[maxcandidates]; + long nwalignmentlength[maxcandidates]; + long nwmatches[maxcandidates]; + long nwmismatches[maxcandidates]; + long nwgaps[maxcandidates]; + char * nwcigar[maxcandidates]; + + int match_size; + int * match; + int * smooth; + int * maxsmooth; + + int best_parents[2]; + + int best_target; + char * best_cigar; + + int * maxi; + char * paln[2]; + char * qaln; + char * diffs; + char * votes; + char * model; + char * ignore; + + struct hit * all_hits; +}; + +static struct chimera_info_s * cia; + +void realloc_arrays(struct chimera_info_s * ci) +{ + int maxhlen = ci->query_head_len; + if (maxhlen > ci->head_alloc) + { + ci->head_alloc = maxhlen; + ci->query_head = (char*) xrealloc(ci->query_head, maxhlen + 1); + } + + /* realloc arrays based on query length */ + + int maxqlen = ci->query_len; + if (maxqlen > ci->query_alloc) + { + ci->query_alloc = maxqlen; + + ci->query_seq = (char*) xrealloc(ci->query_seq, maxqlen + 1); + + for(int i=0; i < parts; i++) + { + int maxpartlen = (maxqlen + parts - 1) / parts; + ci->si[i].qsequence = (char*) xrealloc(ci->si[i].qsequence, + maxpartlen + 1); + } + + ci->maxi = (int *) xrealloc(ci->maxi, (maxqlen + 1) * sizeof(int)); + ci->maxsmooth = (int*) xrealloc(ci->maxsmooth, maxqlen * sizeof(int)); + ci->match = (int*) xrealloc(ci->match, + maxcandidates * maxqlen * sizeof(int)); + ci->smooth = (int*) xrealloc(ci->smooth, + maxcandidates * maxqlen * sizeof(int)); + + int maxalnlen = maxqlen + 2 * db_getlongestsequence(); + ci->paln[0] = (char*) xrealloc(ci->paln[0], maxalnlen+1); + ci->paln[1] = (char*) xrealloc(ci->paln[1], maxalnlen+1); + ci->qaln = (char*) xrealloc(ci->qaln, maxalnlen+1); + ci->diffs = (char*) xrealloc(ci->diffs, maxalnlen+1); + ci->votes = (char*) xrealloc(ci->votes, maxalnlen+1); + ci->model = (char*) xrealloc(ci->model, maxalnlen+1); + ci->ignore = (char*) xrealloc(ci->ignore, maxalnlen+1); + } +} + + +int find_best_parents(struct chimera_info_s * ci) +{ + ci->best_parents[0] = -1; + ci->best_parents[1] = -1; + + /* find the positions with matches for each potential parent */ + + char * qseq = ci->query_seq; + + memset(ci->match, 0, ci->cand_count * ci->query_len * sizeof(int)); + + for(int i=0; i < ci->cand_count; i++) + { + char * tseq = db_getsequence(ci->cand_list[i]); + + int qpos = 0; + int tpos = 0; + + char * p = ci->nwcigar[i]; + char * e = p + strlen(p); + + while (p < e) + { + int run = 1; + int scanlength = 0; + sscanf(p, "%d%n", &run, &scanlength); + p += scanlength; + char op = *p++; + switch (op) + { + case 'M': + for(int k=0; kmatch[i * ci->query_len + qpos] = 1; + qpos++; + tpos++; + } + break; + + case 'I': + tpos += run; + break; + + case 'D': + qpos += run; + break; + } + } + } + + /* Compute smoothed identity score in a window for each candidate, */ + /* and record max smoothed score for each position among candidates. */ + + memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); + + const int window = 32; + + for(int i = 0; i < ci->cand_count; i++) + { + int sum = 0; + for(int qpos = 0; qpos < ci->query_len; qpos++) + { + int z = i * ci->query_len + qpos; + sum += ci->match[z]; + if (qpos >= window) + sum -= ci->match[z-window]; + if (qpos >= window-1) + { + ci->smooth[z] = sum; + if (ci->smooth[z] > ci->maxsmooth[qpos]) + ci->maxsmooth[qpos] = ci->smooth[z]; + } + } + } + + /* find first parent */ + + int wins[ci->cand_count]; + + memset(wins, 0, ci->cand_count * sizeof(int)); + + for(int qpos = window-1; qpos < ci->query_len; qpos++) + { + if (ci->maxsmooth[qpos] != 0) + for(int i=0; i < ci->cand_count; i++) + { + int z = i * ci->query_len + qpos; + if (ci->smooth[z] == ci->maxsmooth[qpos]) + wins[i]++; + } + } + + int best1_w = -1; + int best1_i = -1; + int best2_w = -1; + int best2_i = -1; + + for(int i=0; i < ci->cand_count; i++) + { + int w = wins[i]; + if (w > best1_w) + { + best1_w = w; + best1_i = i; + } + } + + if (best1_w >= 0) + { + /* find second parent */ + + /* wipe out matches in positions covered by first parent */ + + for(int qpos = window - 1; qpos < ci->query_len; qpos++) + { + int z = best1_i * ci->query_len + qpos; + if (ci->smooth[z] == ci->maxsmooth[qpos]) + { + for(int i = qpos + 1 - window; i <= qpos; i++) + for(int j = 0; j < ci->cand_count; j++) + ci->match[j * ci->query_len + i] = 0; + } + } + + /* + recompute smoothed identity over window, and record max smoothed + score for each position among remaining candidates + */ + + memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); + + for(int i = 0; i < ci->cand_count; i++) + { + if (i != best1_i) + { + int sum = 0; + for(int qpos = 0; qpos < ci->query_len; qpos++) + { + int z = i * ci->query_len + qpos; + sum += ci->match[z]; + if (qpos >= window) + sum -= ci->match[z-window]; + if (qpos >= window-1) + { + ci->smooth[z] = sum; + if (ci->smooth[z] > ci->maxsmooth[qpos]) + ci->maxsmooth[qpos] = ci->smooth[z]; + } + } + } + } + + /* find second parent */ + + memset(wins, 0, ci->cand_count * sizeof(int)); + + for(int qpos = window-1; qpos < ci->query_len; qpos++) + { + if (ci->maxsmooth[qpos] != 0) + for(int i=0; i < ci->cand_count; i++) + if (i != best1_i) + { + int z = i * ci->query_len + qpos; + if (ci->smooth[z] == ci->maxsmooth[qpos]) + wins[i]++; + } + } + + for(int i=0; i < ci->cand_count; i++) + { + int w = wins[i]; + if (w > best2_w) + { + best2_w = w; + best2_i = i; + } + } + } + + ci->best_parents[0] = best1_i; + ci->best_parents[1] = best2_i; + + return (best1_w >= 0) && (best2_w >= 0); +} + +int eval_parents(struct chimera_info_s * ci) +{ + int status = 1; + + /* create msa */ + + /* find max insertions in front of each position in the query sequence */ + memset(ci->maxi, 0, (ci->query_len + 1) * sizeof(int)); + + for(int j=0; j<2; j++) + { + char * p = ci->nwcigar[ci->best_parents[j]]; + char * e = p + strlen(p); + int pos = 0; + while (p < e) + { + int run = 1; + int scanlength = 0; + sscanf(p, "%d%n", &run, &scanlength); + p += scanlength; + char op = *p++; + switch (op) + { + case 'M': + case 'D': + pos += run; + break; + + case 'I': + if (run > ci->maxi[pos]) + ci->maxi[pos] = run; + break; + } + } + } + + /* find total alignment length */ + int alnlen = 0; + for(int i=0; i < ci->query_len+1; i++) + alnlen += ci->maxi[i]; + alnlen += ci->query_len; + + /* fill in alignment string for query */ + + char * q = ci->qaln; + int qpos = 0; + for (int i=0; i < ci->query_len; i++) + { + for (int j=0; j < ci->maxi[i]; j++) + *q++ = '-'; + *q++ = chrmap_upcase[(int)(ci->query_seq[qpos++])]; + } + for (int j=0; j < ci->maxi[ci->query_len]; j++) + *q++ = '-'; + *q = 0; + + /* fill in alignment strings for the 2 parents */ + + for(int j=0; j<2; j++) + { + int cand = ci->best_parents[j]; + int target_seqno = ci->cand_list[cand]; + char * target_seq = db_getsequence(target_seqno); + + int inserted = 0; + qpos = 0; + int tpos = 0; + + char * t = ci->paln[j]; + + char * p = ci->nwcigar[cand]; + char * e = p + strlen(p); + while (p < e) + { + int run = 1; + int scanlength = 0; + sscanf(p, "%d%n", &run, &scanlength); + p += scanlength; + char op = *p++; + + if (op == 'I') + { + for(int x=0; x < ci->maxi[qpos]; x++) + { + if (x < run) + *t++ = chrmap_upcase[(int)(target_seq[tpos++])]; + else + *t++ = '-'; + } + inserted = 1; + } + else + { + for(int x=0; x < run; x++) + { + if (!inserted) + for(int y=0; y < ci->maxi[qpos]; y++) + *t++ = '-'; + + if (op == 'M') + *t++ = chrmap_upcase[(int)(target_seq[tpos++])]; + else + *t++ = '-'; + + qpos++; + inserted = 0; + } + } + } + + /* add any gaps at the end */ + + if (!inserted) + for(int x=0; x < ci->maxi[qpos]; x++) + *t++ = '-'; + + /* end of sequence string */ + *t = 0; + } + + memset(ci->ignore, 0, alnlen); + + for(int i = 0; i < alnlen; i++) + { + char qsym = chrmap_4bit[(int)(ci->qaln [i])]; + char p1sym = chrmap_4bit[(int)(ci->paln[0][i])]; + char p2sym = chrmap_4bit[(int)(ci->paln[1][i])]; + + /* mark positions to ignore in voting */ + + /* ignore gap positions and those next to the gap */ + if ((!qsym) || (!p1sym) || (!p2sym)) + { + ci->ignore[i] = 1; + if (i>0) + ci->ignore[i-1] = 1; + if (iignore[i+1] = 1; + } + + /* ignore ambigous symbols */ + if ((qsym>4) || (p1sym>4) || (p2sym>4)) + ci->ignore[i] = 1; + + /* lower case parent symbols that differ from query */ + + if (p1sym && (p1sym != qsym)) + ci->paln[0][i] = tolower(ci->paln[0][i]); + + if (p2sym && (p2sym != qsym)) + ci->paln[1][i] = tolower(ci->paln[1][i]); + + /* compute diffs */ + + char diff; + + if (qsym && p1sym && p2sym) + { + if (p1sym == p2sym) + { + if (qsym == p1sym) + diff = ' '; + else + diff = 'N'; + } + else + { + if (qsym == p1sym) + diff = 'A'; + else if (qsym == p2sym) + diff = 'B'; + else + diff = '?'; + } + } + else + diff = ' '; + + ci->diffs[i] = diff; + } + + ci->diffs[alnlen] = 0; + + /* compute score */ + + int sumA = 0; + int sumB = 0; + int sumN = 0; + + for (int i = 0; i < alnlen; i++) + if (!ci->ignore[i]) + { + char diff = ci->diffs[i]; + + if (diff == 'A') + sumA++; + else if (diff == 'B') + sumB++; + else if (diff != ' ') + sumN++; + } + + int left_n = 0; + int left_a = 0; + int left_y = 0; + int right_n = sumA; + int right_a = sumN; + int right_y = sumB; + + double best_h = -1; + int best_i = -1; + int best_reverse = 0; + + int best_left_y = 0; + int best_right_y = 0; + int best_left_n = 0; + int best_right_n = 0; + int best_left_a = 0; + int best_right_a = 0; + + for (int i=0; iignore[i]) + { + char diff = ci->diffs[i]; + if (diff != ' ') + { + if (diff == 'A') + { + left_y++; + right_n--; + } + else if (diff == 'B') + { + left_n++; + right_y--; + } + else + { + left_a++; + right_a--; + } + + double left_h, right_h, h; + + if ((left_y > left_n) && (right_y > right_n)) + { + left_h = left_y / (opt_xn * (left_n + opt_dn) + left_a); + right_h = right_y / (opt_xn * (right_n + opt_dn) + right_a); + h = left_h * right_h; + + if (h > best_h) + { + best_reverse = 0; + best_h = h; + best_i = i; + best_left_n = left_n; + best_left_y = left_y; + best_left_a = left_a; + best_right_n = right_n; + best_right_y = right_y; + best_right_a = right_a; + } + } + else if ((left_n > left_y) && (right_n > right_y)) + { + /* swap left/right and yes/no */ + + left_h = left_n / (opt_xn * (left_y + opt_dn) + left_a); + right_h = right_n / (opt_xn * (right_y + opt_dn) + right_a); + h = left_h * right_h; + + if (h > best_h) + { + best_reverse = 1; + best_h = h; + best_i = i; + best_left_n = left_y; + best_left_y = left_n; + best_left_a = left_a; + best_right_n = right_y; + best_right_y = right_n; + best_right_a = right_a; + } + } + } + } + } + + if (best_h >= 0.0) + { + status = 2; + + /* flip A and B if necessary */ + + if (best_reverse) + for(int i = 0; i < alnlen; i++) + { + char diff = ci->diffs[i]; + if (diff == 'A') + ci->diffs[i] = 'B'; + else if (diff == 'B') + ci->diffs[i] = 'A'; + } + + /* fill in votes and model */ + + for(int i = 0; i < alnlen; i++) + { + char m = i <= best_i ? 'A' : 'B'; + ci->model[i] = m; + + char v = ' '; + if (!ci->ignore[i]) + { + char d = ci->diffs[i]; + + if ((d == 'A') || (d == 'B')) + { + if (d == m) + v = '+'; + else + v = '!'; + } + else if ((d == 'N') || (d == '?')) + { + v = '0'; + } + } + ci->votes[i] = v; + + /* lower case diffs for no votes */ + if (v == '!') + ci->diffs[i] = tolower(ci->diffs[i]); + } + + /* fill in crossover region */ + + for(int i = best_i + 1; i < alnlen; i++) + if ((ci->diffs[i] == ' ') || (ci->diffs[i] == 'A')) + ci->model[i] = 'x'; + else + break; + + ci->votes[alnlen] = 0; + ci->model[alnlen] = 0; + + /* count matches */ + + int index_a = best_reverse ? 1 : 0; + int index_b = best_reverse ? 0 : 1; + + int match_QA = 0; + int match_QB = 0; + int match_AB = 0; + int match_QM = 0; + int cols = 0; + + for(int i = 0; i < alnlen; i++) + { + if (! ci->ignore[i]) + { + cols++; + + char qsym = chrmap_4bit[(int)(ci->qaln[i])]; + char asym = chrmap_4bit[(int)(ci->paln[index_a][i])]; + char bsym = chrmap_4bit[(int)(ci->paln[index_b][i])]; + char msym = i <= best_i ? asym : bsym; + + if (qsym == asym) + match_QA++; + + if (qsym == bsym) + match_QB++; + + if (asym == bsym) + match_AB++; + + if (qsym == msym) + match_QM++; + } + } + + int seqno_a = ci->cand_list[ci->best_parents[index_a]]; + int seqno_b = ci->cand_list[ci->best_parents[index_b]]; + + double QA = 100.0 * match_QA / cols; + double QB = 100.0 * match_QB / cols; + double AB = 100.0 * match_AB / cols; + double QT = MAX(QA, QB); + double QM = 100.0 * match_QM / cols; + double divdiff = QM - QT; + double divfrac = 100.0 * divdiff / QT; + + int sumL = best_left_n + best_left_a + best_left_y; + int sumR = best_right_n + best_right_a + best_right_y; + + if (best_h >= opt_minh) + { + status = 3; + if ((divdiff >= opt_mindiv) && + (sumL >= opt_mindiffs) && + (sumR >= opt_mindiffs)) + status = 4; + } + + /* print alignment */ + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_lock(&mutex_output); +#endif + if (opt_uchimealns && (status == 4)) + { + fprintf(fp_uchimealns, "\n"); + fprintf(fp_uchimealns, "----------------------------------------" + "--------------------------------\n"); + fprintf(fp_uchimealns, "Query (%5d nt) %s\n", + ci->query_len, ci->query_head); + fprintf(fp_uchimealns, "ParentA (%5lu nt) %s\n", + db_getsequencelen(seqno_a), + db_getheader(seqno_a)); + fprintf(fp_uchimealns, "ParentB (%5lu nt) %s\n", + db_getsequencelen(seqno_b), + db_getheader(seqno_b)); + fprintf(fp_uchimealns, "\n"); + + int width = opt_alignwidth > 0 ? opt_alignwidth : alnlen; + qpos = 0; + int p1pos = 0; + int p2pos = 0; + int rest = alnlen; + + for(int i = 0; i < alnlen; i += width) + { + /* count non-gap symbols on current line */ + + int qnt, p1nt, p2nt; + qnt = p1nt = p2nt = 0; + + int w = MIN(rest,width); + + for(int j=0; jqaln[i+j] != '-') + qnt++; + if (ci->paln[0][i+j] != '-') + p1nt++; + if (ci->paln[1][i+j] != '-') + p2nt++; + } + + if (! best_reverse) + { + fprintf(fp_uchimealns, "A %5d %.*s %d\n", + p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); + fprintf(fp_uchimealns, "Q %5d %.*s %d\n", + qpos+1, w, ci->qaln+i, qpos+qnt); + fprintf(fp_uchimealns, "B %5d %.*s %d\n", + p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); + } + else + { + fprintf(fp_uchimealns, "A %5d %.*s %d\n", + p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); + fprintf(fp_uchimealns, "Q %5d %.*s %d\n", + qpos+1, w, ci->qaln+i, qpos+qnt); + fprintf(fp_uchimealns, "B %5d %.*s %d\n", + p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); + } + + fprintf(fp_uchimealns, "Diffs %.*s\n", w, ci->diffs+i); + fprintf(fp_uchimealns, "Votes %.*s\n", w, ci->votes+i); + fprintf(fp_uchimealns, "Model %.*s\n", w, ci->model+i); + fprintf(fp_uchimealns, "\n"); + + qpos += qnt; + p1pos += p1nt; + p2pos += p2nt; + rest -= width; + } + + fprintf(fp_uchimealns, "Ids. QA %.1f%%, QB %.1f%%, AB %.1f%%, " + "QModel %.1f%%, Div. %+.1f%%\n", + QA, QB, AB, QM, divfrac); + + fprintf(fp_uchimealns, "Diffs Left %d: N %d, A %d, Y %d (%.1f%%); " + "Right %d: N %d, A %d, Y %d (%.1f%%), Score %.4f\n", + sumL, best_left_n, best_left_a, best_left_y, + 100.0 * best_left_y / sumL, + sumR, best_right_n, best_right_a, best_right_y, + 100.0 * best_right_y / sumR, + best_h); + } + + if (opt_uchimeout) + { + if (opt_uchimeout5) + { + fprintf(fp_uchimeout, + "%.4f\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" + "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", + best_h, + ci->query_head, + db_getheader(seqno_a), + db_getheader(seqno_b), + QM, + QA, + QB, + AB, + QT, + best_left_y, + best_left_n, + best_left_a, + best_right_y, + best_right_n, + best_right_a, + divdiff, + status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); + } + else + { + fprintf(fp_uchimeout, + "%.4f\t%s\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" + "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", + best_h, + ci->query_head, + db_getheader(seqno_a), + db_getheader(seqno_b), + db_getheader(QA >= QB ? seqno_a : seqno_b), + QM, + QA, + QB, + AB, + QT, + best_left_y, + best_left_n, + best_left_a, + best_right_y, + best_right_n, + best_right_a, + divdiff, + status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); + } + } +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_output); +#endif + } + + return status; +} + +/* + new chimeric status: + 0: no parents, non-chimeric + 1: score < 0 (no alignment), non-chimeric + 2: score < minh, non-chimeric + 3: score >= minh, suspicious + 4: score >= minh && (divdiff >= opt_mindiv) && ..., chimeric +*/ + +void query_init(struct searchinfo_s * si) +{ + si->qsequence = 0; + si->kmers = 0; + si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); + si->kmers = (count_t *) xmalloc(db_getsequencecount() * + sizeof(count_t) + 32); + si->hit_count = 0; + si->uh = unique_init(); + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + si->nw = nw_init(); + si->m = minheap_init(tophits); +} + +void query_exit(struct searchinfo_s * si) +{ + search16_exit(si->s); + unique_exit(si->uh); + minheap_exit(si->m); + nw_exit(si->nw); + + if (si->qsequence) + free(si->qsequence); + if (si->hits) + free(si->hits); + if (si->kmers) + free(si->kmers); +} + +void partition_query(struct chimera_info_s * ci) +{ + int rest = ci->query_len; + char * p = ci->query_seq; + for (int i=0; isi + i; + + si->query_no = ci->query_no; + si->strand = 0; + si->qsize = ci->query_size; + si->query_head_len = ci->query_head_len; + si->query_head = ci->query_head; + si->qseqlen = len; + strncpy(si->qsequence, p, len); + si->qsequence[len] = 0; + + rest -= len; + p += len; + } +} + +void chimera_thread_init(struct chimera_info_s * ci) +{ + ci->query_alloc = 0; + ci->head_alloc = 0; + ci->query_head = 0; + ci->query_seq = 0; + ci->maxi = 0; + ci->maxsmooth = 0; + ci->match = 0; + ci->smooth = 0; + ci->paln[0] = 0; + ci->paln[1] = 0; + ci->qaln = 0; + ci->diffs = 0; + ci->votes = 0; + ci->model = 0; + ci->ignore = 0; + + for(int i = 0; i < parts; i++) + query_init(ci->si + i); + + ci->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); +} + +void chimera_thread_exit(struct chimera_info_s * ci) +{ + search16_exit(ci->s); + + for(int i = 0; i < parts; i++) + query_exit(ci->si + i); + + if (ci->maxsmooth) + free(ci->maxsmooth); + if (ci->match) + free(ci->match); + if (ci->smooth) + free(ci->smooth); + if (ci->diffs) + free(ci->diffs); + if (ci->votes) + free(ci->votes); + if (ci->model) + free(ci->model); + if (ci->ignore) + free(ci->ignore); + if (ci->maxi) + free(ci->maxi); + if (ci->qaln) + free(ci->qaln); + if (ci->paln[0]) + free(ci->paln[0]); + if (ci->paln[1]) + free(ci->paln[1]); + + if (ci->query_seq) + free(ci->query_seq); + if (ci->query_head) + free(ci->query_head); +} + +unsigned long chimera_thread_core(struct chimera_info_s * ci) +{ + chimera_thread_init(ci); + + struct hit * allhits_list = (struct hit *) xmalloc(maxcandidates * + sizeof(struct hit)); + + LinearMemoryAligner lma; + + long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); + + lma.set_parameters(scorematrix, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); + + while(1) + { + /* get next sequence */ + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_lock(&mutex_input); +#endif + + if (opt_uchime_ref) + { + if (fasta_next(query_fasta_h, ! opt_notrunclabels, + chrmap_no_change)) + { + ci->query_head_len = fasta_get_header_length(query_fasta_h); + ci->query_len = fasta_get_sequence_length(query_fasta_h); + ci->query_no = fasta_get_seqno(query_fasta_h); + ci->query_size = fasta_get_abundance(query_fasta_h); + + /* if necessary expand memory for arrays based on query length */ + realloc_arrays(ci); + + /* copy the data locally (query seq, head) */ + strcpy(ci->query_head, fasta_get_header(query_fasta_h)); + strcpy(ci->query_seq, fasta_get_sequence(query_fasta_h)); + } + else + { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_input); +#endif + break; /* end while loop */ + } + } + else + { + if (seqno < db_getsequencecount()) + { + ci->query_no = seqno; + ci->query_head_len = db_getheaderlen(seqno); + ci->query_len = db_getsequencelen(seqno); + ci->query_size = db_getabundance(seqno); + + /* if necessary expand memory for arrays based on query length */ + realloc_arrays(ci); + + strcpy(ci->query_head, db_getheader(seqno)); + strcpy(ci->query_seq, db_getsequence(seqno)); + } + else + { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_input); +#endif + break; /* end while loop */ + } + } + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_input); +#endif + + + + int status = 0; + + /* partition query */ + partition_query(ci); + + /* perform searches and collect candidate parents */ + ci->cand_count = 0; + int allhits_count = 0; + + if (ci->query_len >= parts) + for (int i=0; isi+i, opt_qmask); + search_joinhits(ci->si+i, 0, & hits, & hit_count); + for(int j=0; jcand_count; k++) + if (ci->cand_list[k] == target) + break; + + if (k == ci->cand_count) + ci->cand_list[ci->cand_count++] = target; + + /* deallocate cigar */ + if (allhits_list[i].nwalignment) + free(allhits_list[i].nwalignment); + } + + + /* align full query to each candidate */ + + search16_qprep(ci->s, ci->query_seq, ci->query_len); + + search16(ci->s, + ci->cand_count, + ci->cand_list, + ci->snwscore, + ci->snwalignmentlength, + ci->snwmatches, + ci->snwmismatches, + ci->snwgaps, + ci->nwcigar); + + for(int i=0; i < ci->cand_count; i++) + { + long target = ci->cand_list[i]; + long nwscore = ci->snwscore[i]; + char * nwcigar; + long nwalignmentlength; + long nwmatches; + long nwmismatches; + long nwgaps; + + if (nwscore == SHRT_MAX) + { + /* In case the SIMD aligner cannot align, + perform a new alignment with the + linear memory aligner */ + + char * tseq = db_getsequence(target); + long tseqlen = db_getsequencelen(target); + + if (ci->nwcigar[i]) + free(ci->nwcigar[i]); + + nwcigar = xstrdup(lma.align(ci->query_seq, + tseq, + ci->query_len, + tseqlen)); + lma.alignstats(nwcigar, + ci->query_seq, + tseq, + & nwscore, + & nwalignmentlength, + & nwmatches, + & nwmismatches, + & nwgaps); + + ci->nwcigar[i] = nwcigar; + ci->nwscore[i] = nwscore; + ci->nwalignmentlength[i] = nwalignmentlength; + ci->nwmatches[i] = nwmatches; + ci->nwmismatches[i] = nwmismatches; + ci->nwgaps[i] = nwgaps; + } + else + { + ci->nwscore[i] = ci->snwscore[i]; + ci->nwalignmentlength[i] = ci->snwalignmentlength[i]; + ci->nwmatches[i] = ci->snwmatches[i]; + ci->nwmismatches[i] = ci->snwmismatches[i]; + ci->nwgaps[i] = ci->snwgaps[i]; + } + } + + + /* find the best pair of parents, then compute score for them */ + + if (find_best_parents(ci)) + status = eval_parents(ci); + else + status = 0; + + /* output results */ + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_lock(&mutex_output); +#endif + if (status == 4) + { + chimera_count++; + + if (opt_chimeras) + { + fasta_print(fp_chimeras, + ci->query_head, + ci->query_seq, + ci->query_len); + } + } + + if (status == 3) + { + if (opt_borderline) + { + fasta_print(fp_borderline, + ci->query_head, + ci->query_seq, + ci->query_len); + } + } + + if (status < 3) + { + nonchimera_count++; + + /* output no parents, no chimeras */ + if ((status < 2) && opt_uchimeout) + { + if (opt_uchimeout5) + fprintf(fp_uchimeout, + "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*" + "\t0\t0\t0\t0\t0\t0\t*\tN\n", + ci->query_head); + else + fprintf(fp_uchimeout, + "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*\t*" + "\t0\t0\t0\t0\t0\t0\t*\tN\n", + ci->query_head); + } + + /* uchime_denovo: add non-chimeras to db */ + if (opt_uchime_denovo) + dbindex_addsequence(seqno, opt_qmask); + + if (opt_nonchimeras) + { + fasta_print_relabel(fp_nonchimeras, + ci->query_seq, + ci->query_len, + ci->query_head, + ci->query_head_len, + ci->query_size, + nonchimera_count); + } + } + + for (int i=0; i < ci->cand_count; i++) + if (ci->nwcigar[i]) + free(ci->nwcigar[i]); + + if (opt_uchime_ref) + progress = fasta_get_position(query_fasta_h); + else + progress += db_getsequencelen(seqno); + + progress_update(progress); + + seqno++; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_output); +#endif + } + + if (allhits_list) + free(allhits_list); + + chimera_thread_exit(ci); + + free(scorematrix); + + return 0; +} + +void * chimera_thread_worker(void * vp) +{ + return (void *) (chimera_thread_core(cia + (intptr_t) vp)); +} + +void chimera_threads_run() +{ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* create worker threads */ + for(long t=0; tqsequence, db_getsequence(seqno)); /* perform search */ - search_onequery(si); + search_onequery(si, opt_qmask); } inline void cluster_worker(long t) @@ -180,6 +176,7 @@ inline void cluster_worker(long t) void * threads_worker(void * vp) { + #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) long t = (long) vp; @@ -199,39 +196,42 @@ void * threads_worker(void * vp) } } pthread_mutex_unlock(&tip->mutex); -#else - todo -#endif - + #endif return 0; } void threads_wakeup(int queries) { + int threads = queries > opt_threads ? opt_threads : queries; + int queries_rest = queries; + int threads_rest = threads; + int query_next = 0; + + /* tell the threads that there is work to do */ + for(int t=0; t < threads; t++) + { + thread_info_t * tip = ti + t; + + tip->query_first = query_next; + tip->query_count = (queries_rest + threads_rest - 1) / threads_rest; + queries_rest -= tip->query_count; + query_next += tip->query_count; + threads_rest--; + #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - int threads = queries > opt_threads ? opt_threads : queries; - int queries_rest = queries; - int threads_rest = threads; - int query_next = 0; - - /* tell the threads that there is work to do */ - for(int t=0; t < threads; t++) - { - thread_info_t * tip = ti + t; + pthread_mutex_lock(&tip->mutex); + tip->work = 1; + pthread_cond_signal(&tip->cond); + pthread_mutex_unlock(&tip->mutex); +#else + ti->work = 1; +#endif + } - tip->query_first = query_next; - tip->query_count = (queries_rest + threads_rest - 1) / threads_rest; - queries_rest -= tip->query_count; - query_next += tip->query_count; - threads_rest--; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&tip->mutex); - tip->work = 1; - pthread_cond_signal(&tip->cond); - pthread_mutex_unlock(&tip->mutex); - } - + /* wait for theads to finish their work */ for(int t=0; t < threads; t++) { @@ -241,20 +241,20 @@ void threads_wakeup(int queries) pthread_cond_wait(&tip->cond, &tip->mutex); pthread_mutex_unlock(&tip->mutex); } -#else - todo #endif } void threads_init() { + /* allocate memory for thread info */ + ti = (thread_info_t *) xmalloc(opt_threads * sizeof(thread_info_t)); + + #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) pthread_attr_init(&attr); pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - /* allocate memory for thread info */ - ti = (thread_info_t *) xmalloc(opt_threads * sizeof(thread_info_t)); /* init and create worker threads */ for(int t=0; t < opt_threads; t++) @@ -267,8 +267,11 @@ void threads_init() fatal("Cannot create thread"); } #else - todo + long t = 0; //one thread + ti->work = 0; + cluster_worker(t); #endif + } void threads_exit() @@ -293,11 +296,10 @@ void threads_exit() pthread_cond_destroy(&tip->cond); pthread_mutex_destroy(&tip->mutex); } - free(ti); - pthread_attr_destroy(&attr); -#else - todo + pthread_attr_destroy(&attr); #endif + free(ti); + } void cluster_query_init(struct searchinfo_s * si) @@ -399,11 +401,7 @@ void cluster_core_results_hit(struct hit * best, qsequence, qseqlen, qsequence_rc); if (opt_matched) - { - fprintf(fp_matched, ">%s\n", query_head); - fprint_fasta_seq_only(fp_matched, qsequence, qseqlen, - opt_fasta_width); - } + fasta_print(fp_matched, query_head, qsequence, qseqlen); } void cluster_core_results_nohit(int clusterno, @@ -430,11 +428,7 @@ void cluster_core_results_nohit(int clusterno, } if (opt_notmatched) - { - fprintf(fp_notmatched, ">%s\n", query_head); - fprint_fasta_seq_only(fp_notmatched, qsequence, qseqlen, - opt_fasta_width); - } + fasta_print(fp_notmatched, query_head, qsequence, qseqlen); } int compare_kmersample(const void * a, const void * b) @@ -572,8 +566,7 @@ void cluster_core_parallel() sic->kmersample); /* check if min number of shared kmers is satisfied */ - if ((shared >= MINMATCHSAMPLECOUNT) && - (shared >= si->kmersamplecount / MINMATCHSAMPLEFREQ)) + if (search_enough_kmers(si, shared)) { unsigned int length = sic->qseqlen; @@ -824,7 +817,7 @@ void cluster_core_parallel() clusterinfo[myseqno].strand = 0; /* add current sequence to database */ - dbindex_addsequence(myseqno); + dbindex_addsequence(myseqno, opt_qmask); /* output intermediate results to uc etc */ cluster_core_results_nohit(clusters, @@ -938,7 +931,7 @@ void cluster_core_serial() clusterinfo[seqno].clusterno = clusters; clusterinfo[seqno].cigar = 0; clusterinfo[seqno].strand = 0; - dbindex_addsequence(seqno); + dbindex_addsequence(seqno, opt_qmask); cluster_core_results_nohit(clusters, si_p->query_head, si_p->qseqlen, @@ -1037,7 +1030,7 @@ void cluster(char * dbname, fatal("Unable to open notmatched output file for writing"); } - db_read(dbname, opt_qmask != MASK_SOFT); + db_read(dbname, 0); results_show_samheader(fp_samout, cmdline, dbname); @@ -1055,7 +1048,7 @@ void cluster(char * dbname, else if (opt_cluster_size) db_sortbyabundance(); - dbindex_prepare(1); + dbindex_prepare(1, opt_qmask); /* tophits = the maximum number of hits we need to store */ @@ -1163,43 +1156,13 @@ void cluster(char * dbname, if (opt_centroids) { - unsigned int size = cluster_abundance[clusterno]; - - if (opt_relabel_sha1 || opt_relabel_md5) - { - char * seq = db_getsequence(seqno); - unsigned int len = db_getsequencelen(seqno); - - fprintf(fp_centroids, ">"); - - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp_centroids, seq, len); - else - fprint_seq_digest_md5(fp_centroids, seq, len); - - if (opt_sizeout) - fprintf(fp_centroids, ";size=%u;\n", size); - else - fprintf(fp_centroids, "\n"); - - db_fprint_fasta_seq_only(fp_centroids, seqno); - } - else if (opt_relabel) - { - if (opt_sizeout) - fprintf(fp_centroids, ">%s%d;size=%u;\n", opt_relabel, i+1, size); - else - fprintf(fp_centroids, ">%s%d\n", opt_relabel, i+1); - - db_fprint_fasta_seq_only(fp_centroids, seqno); - } - else - { - if (opt_sizeout) - db_fprint_fasta_with_size(fp_centroids, seqno, size); - else - db_fprint_fasta(fp_centroids, seqno); - } + fasta_print_relabel(fp_centroids, + db_getsequence(seqno), + db_getsequencelen(seqno), + db_getheader(seqno), + db_getheaderlen(seqno), + cluster_abundance[clusterno], + clusterno+1); } if (opt_uc) @@ -1228,14 +1191,8 @@ void cluster(char * dbname, /* performed for all sequences */ if (opt_clusters) - { - fprintf(fp_clusters, ">%s\n", db_getheader(seqno)); - fprint_fasta_seq_only(fp_clusters, - db_getsequence(seqno), - db_getsequencelen(seqno), - opt_fasta_width); - } - + fasta_print_db(fp_clusters, seqno); + progress_update(i); } @@ -1317,8 +1274,6 @@ void cluster(char * dbname, lastcluster = -1; - abundance_t * abundance_handle = abundance_init(); - for(int i=0; i dataalloc) + size_t needed = datalen + headerlength + 1 + sequencelength + 1; + if (is_fastq) + needed += sequencelength + 1; + while (dataalloc < needed) dataalloc += MEMCHUNK; if (dataalloc > dataalloc_old) datap = (char *) xrealloc(datap, dataalloc); /* store the header */ size_t header_p = datalen; - memcpy(datap + header_p, fasta_get_header(h), headerlength + 1); + memcpy(datap + header_p, + fastx_get_header(h), + headerlength + 1); datalen += headerlength + 1; /* store sequence */ size_t sequence_p = datalen; - memcpy(datap+sequence_p, fasta_get_sequence(h), sequencelength + 1); + memcpy(datap + sequence_p, + fastx_get_sequence(h), + sequencelength + 1); datalen += sequencelength + 1; + size_t quality_p = datalen; + if (is_fastq) + { + /* store quality */ + memcpy(datap+quality_p, + fastx_get_quality(h), + sequencelength + 1); + datalen += sequencelength + 1; + } + /* grow space for index, if necessary */ size_t seqindex_alloc_old = seqindex_alloc; while ((sequences + 1) * sizeof(seqinfo_t) > seqindex_alloc) @@ -154,9 +187,10 @@ void db_read(const char * filename, int upcase) /* update index */ seqinfo_t * seqindex_p = seqindex + sequences; seqindex_p->headerlen = headerlength; - seqindex_p->header_p = header_p; seqindex_p->seqlen = sequencelength; + seqindex_p->header_p = header_p; seqindex_p->seq_p = sequence_p; + seqindex_p->qual_p = quality_p; seqindex_p->size = abundance; /* update statistics */ @@ -169,12 +203,12 @@ void db_read(const char * filename, int upcase) if (headerlength > longestheader) longestheader = headerlength; } - progress_update(fasta_get_position(h)); + progress_update(fastx_get_position(h)); } progress_done(); free(prompt); - fasta_close(h); + fastx_close(h); if (!opt_quiet) { @@ -237,7 +271,6 @@ void db_read(const char * filename, int upcase) } show_rusage(); - } unsigned long db_getsequencecount() @@ -267,65 +300,12 @@ unsigned long db_getshortestsequence() void db_free() { - abundance_exit(db_abundance); if (datap) free(datap); if (seqindex) free(seqindex); } -void db_fprint_fasta_seq_only(FILE * fp, unsigned long seqno) -{ - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); -} - -void db_fprint_fasta(FILE * fp, unsigned long seqno) -{ - char * hdr = db_getheader(seqno); - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - - fprint_fasta_hdr_only(fp, hdr); - fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); -} - -void db_fprint_fasta_with_size(FILE * fp, unsigned long seqno, unsigned long size) -{ - char * hdr = db_getheader(seqno); - int hdrlen = db_getheaderlen(seqno); - - abundance_fprint_header_with_size(db_abundance, - fp, - hdr, - hdrlen, - size); - - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - - fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); -} - -void db_fprint_fasta_strip_size(FILE * fp, unsigned long seqno) -{ - /* write FASTA but remove abundance information, as with --xsize option */ - - char * hdr = db_getheader(seqno); - int hdrlen = db_getheaderlen(seqno); - - abundance_fprint_header_strip_size(db_abundance, - fp, - hdr, - hdrlen); - - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - - fprint_fasta_seq_only(fp, seq, seqlen, opt_fasta_width); -} - int compare_bylength(const void * a, const void * b) { seqinfo_t * x = (seqinfo_t *) a; @@ -444,3 +424,5 @@ void db_sortbyabundance() qsort(seqindex, sequences, sizeof(seqinfo_t), compare_byabundance); progress_done(); } + + diff --git a/source/vsearch_src/db.h b/source/vsearch_src/db.h old mode 100644 new mode 100755 index 758af205..7c7415b4 --- a/source/vsearch_src/db.h +++ b/source/vsearch_src/db.h @@ -62,6 +62,7 @@ struct seqinfo_s { size_t header_p; size_t seq_p; + size_t qual_p; unsigned int headerlen; unsigned int seqlen; unsigned int size; @@ -71,7 +72,6 @@ typedef struct seqinfo_s seqinfo_t; extern char * datap; extern seqinfo_t * seqindex; -extern abundance_t * db_abundance; inline char * db_getheader(unsigned long seqno) { @@ -107,15 +107,6 @@ unsigned long db_getlongestheader(); unsigned long db_getlongestsequence(); unsigned long db_getshortestsequence(); -void db_fprint_fasta(FILE * fp, unsigned long seqno); - -void db_fprint_fasta_seq_only(FILE * fp, unsigned long seqno); - -void db_fprint_fasta_with_size(FILE * fp, unsigned long seqno, unsigned long size); - -void db_fprint_fasta_strip_size(FILE * fp, unsigned long seqno); - - /* Note: the sorting functions below must be called after db_read, but before dbindex_prepare */ @@ -123,3 +114,6 @@ void db_sortbylength(); void db_sortbylength_shortest_first(); void db_sortbyabundance(); + +bool db_is_fastq(); +char * db_getquality(unsigned long seqno); diff --git a/source/vsearch_src/dbindex.cc b/source/vsearch_src/dbindex.cc old mode 100644 new mode 100755 index 636eb259..0222deda --- a/source/vsearch_src/dbindex.cc +++ b/source/vsearch_src/dbindex.cc @@ -83,7 +83,7 @@ void fprint_kmer(FILE * f, unsigned int kk, unsigned long kmer) fprintf(f, "%c", sym_nt_2bit[(x >> (2*(kk-i-1))) & 3]); } -void dbindex_addsequence(unsigned int seqno) +void dbindex_addsequence(unsigned int seqno, int seqmask) { #if 0 printf("Adding seqno %d as index element no %d\n", seqno, dbindex_count); @@ -93,7 +93,7 @@ void dbindex_addsequence(unsigned int seqno) unsigned int * uniquelist; unique_count(dbindex_uh, opt_wordlength, db_getsequencelen(seqno), db_getsequence(seqno), - & uniquecount, & uniquelist); + & uniquecount, & uniquelist, seqmask); dbindex_map[dbindex_count] = seqno; for(unsigned int i=0; isize; if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) { - if (opt_output) - { - if (opt_relabel_sha1 || opt_relabel_md5) - { - fprintf(fp_output, ">"); - char * seq = db_getsequence(bp->seqno_first); - unsigned int len = db_getsequencelen(bp->seqno_first); - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp_output, seq, len); - else - fprint_seq_digest_md5(fp_output, seq, len); - if (opt_sizeout) - fprintf(fp_output, ";size=%u;\n", bp->size); - else - fprintf(fp_output, "\n"); - db_fprint_fasta_seq_only(fp_output, bp->seqno_first); - } - else if (opt_relabel) - { - if (opt_sizeout) - fprintf(fp_output, ">%s%ld;size=%u;\n", opt_relabel, i+1, - bp->size); - else - fprintf(fp_output, ">%s%ld\n", opt_relabel, i+1); - db_fprint_fasta_seq_only(fp_output, bp->seqno_first); - } - else - { - if (opt_sizeout) - db_fprint_fasta_with_size(fp_output, - bp->seqno_first, bp->size); - else - db_fprint_fasta(fp_output, - bp->seqno_first); - } - } selected++; if (selected == opt_topn) break; } - if (opt_output) - progress_update(i); } + + /* write output */ + if (opt_output) { + progress_init("Writing output file", clusters); + + long relabel_count = 0; + for (long i=0; isize; + if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) + { + relabel_count++; + fasta_print_relabel(fp_output, + db_getsequence(bp->seqno_first), + db_getsequencelen(bp->seqno_first), + db_getheader(bp->seqno_first), + db_getheaderlen(bp->seqno_first), + size, + relabel_count); + if (relabel_count == opt_topn) + break; + } + progress_update(i); + } + progress_done(); fclose(fp_output); } @@ -708,63 +695,49 @@ void derep_prefix() show_rusage(); - long selected = 0; + /* count selected */ - if (opt_output) - progress_init("Writing output file", clusters); - + long selected = 0; for (long i=0; isize; if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) { - if (opt_output) - { - if (opt_relabel_sha1 || opt_relabel_md5) - { - fprintf(fp_output, ">"); - char * seq = db_getsequence(bp->seqno_first); - unsigned int len = db_getsequencelen(bp->seqno_first); - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp_output, seq, len); - else - fprint_seq_digest_md5(fp_output, seq, len); - if (opt_sizeout) - fprintf(fp_output, ";size=%u;\n", bp->size); - else - fprintf(fp_output, "\n"); - db_fprint_fasta_seq_only(fp_output, bp->seqno_first); - } - else if (opt_relabel) - { - if (opt_sizeout) - fprintf(fp_output, ">%s%ld;size=%u;\n", opt_relabel, i+1, - bp->size); - else - fprintf(fp_output, ">%s%ld\n", opt_relabel, i+1); - db_fprint_fasta_seq_only(fp_output, bp->seqno_first); - } - else - { - if (opt_sizeout) - db_fprint_fasta_with_size(fp_output, - bp->seqno_first, bp->size); - else - db_fprint_fasta(fp_output, - bp->seqno_first); - } - } selected++; if (selected == opt_topn) break; } - if (opt_output) - progress_update(i); } + + /* write output */ + if (opt_output) { + progress_init("Writing output file", clusters); + + long relabel_count = 0; + for (long i=0; isize; + if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) + { + relabel_count++; + fasta_print_relabel(fp_output, + db_getsequence(bp->seqno_first), + db_getsequencelen(bp->seqno_first), + db_getheader(bp->seqno_first), + db_getheaderlen(bp->seqno_first), + size, + relabel_count); + if (relabel_count == opt_topn) + break; + } + progress_update(i); + } + progress_done(); fclose(fp_output); } diff --git a/source/vsearch_src/derep.h b/source/vsearch_src/derep.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/fasta.cc b/source/vsearch_src/fasta.cc old mode 100644 new mode 100755 index 57996512..75d37d83 --- a/source/vsearch_src/fasta.cc +++ b/source/vsearch_src/fasta.cc @@ -128,10 +128,11 @@ fasta_handle fasta_open(const char * filename) if (h->format == FORMAT_GZIP) { - /* GZIP: Close ordinary file and open again as gzipped file */ + /* GZIP: Keep original file open, then open as gzipped file as well */ #ifdef HAVE_ZLIB_H - fclose(h->fp); - if (! (h->fp_gz = gzopen(filename, "rb"))) + if (!gz_lib) + fatal("Files compressed with gzip are not supported"); + if (! (h->fp_gz = (*gzdopen_p)(fileno(h->fp), "rb"))) fatal("Unable to open gzip compressed fasta file (%s)", filename); #else fatal("Files compressed with gzip are not supported"); @@ -142,22 +143,25 @@ fasta_handle fasta_open(const char * filename) { /* BZIP2: Keep original file open, then open as bzipped file as well */ #ifdef HAVE_ZLIB_H + if (!bz2_lib) + fatal("Files compressed with bzip2 are not supported"); int bzError; - if (! (h->fp_bz = BZ2_bzReadOpen(& bzError, h->fp, - BZ_VERBOSE_0, BZ_MORE_MEM, NULL, 0))) + if (! (h->fp_bz = (*BZ2_bzReadOpen_p)(& bzError, h->fp, + BZ_VERBOSE_0, BZ_MORE_MEM, + NULL, 0))) fatal("Unable to open bzip2 compressed fasta file (%s)", filename); #else fatal("Files compressed with bzip2 are not supported"); #endif } + + h->stripped_all = 0; for(int i=0; i<256; i++) h->stripped[i] = 0; - h->abundance = abundance_init(); - h->file_position = 0; buffer_init(& h->file_buffer); @@ -165,6 +169,7 @@ fasta_handle fasta_open(const char * filename) buffer_init(& h->sequence_buffer); h->lineno = 1; + h->lineno_start = 1; h->seqno = -1; return h; @@ -205,15 +210,17 @@ void fasta_close(fasta_handle h) case FORMAT_GZIP: #ifdef HAVE_ZLIB_H - gzclose(h->fp_gz); + (*gzclose_p)(h->fp_gz); h->fp_gz = 0; + h->fp = 0; break; #endif case FORMAT_BZIP: #ifdef HAVE_BZLIB_H - BZ2_bzReadClose(&bz_error, h->fp_bz); + (*BZ2_bzReadClose_p)(&bz_error, h->fp_bz); h->fp_bz = 0; + h->fp = 0; break; #endif @@ -221,8 +228,6 @@ void fasta_close(fasta_handle h) fatal("Internal error"); } - abundance_exit(h->abundance); - buffer_free(& h->file_buffer); buffer_free(& h->header_buffer); buffer_free(& h->sequence_buffer); @@ -274,9 +279,10 @@ unsigned long fasta_file_fill_buffer(fasta_handle h) case FORMAT_GZIP: #ifdef HAVE_ZLIB_H - bytes_read = gzread(h->fp_gz, - h->file_buffer.data + h->file_buffer.position, - space); + bytes_read = (*gzread_p)(h->fp_gz, + h->file_buffer.data + + h->file_buffer.position, + space); if (bytes_read < 0) fatal("Error reading gzip compressed fasta file"); break; @@ -284,11 +290,11 @@ unsigned long fasta_file_fill_buffer(fasta_handle h) case FORMAT_BZIP: #ifdef HAVE_BZLIB_H - bytes_read = BZ2_bzRead(& bzError, - h->fp_bz, - h->file_buffer.data - + h->file_buffer.position, - space); + bytes_read = (*BZ2_bzRead_p)(& bzError, + h->fp_bz, + h->file_buffer.data + + h->file_buffer.position, + space); if ((bytes_read < 0) || ! ((bzError == BZ_OK) || (bzError == BZ_STREAM_END) || @@ -313,8 +319,8 @@ void buffer_extend(struct fasta_buffer_s * buffer, char * buf, unsigned long len /* alloc space for len more characters + terminating zero, but round up to nearest block size */ buffer->alloc = - (FASTA_BUFFER_ALLOC * - ((buffer->length + len) / FASTA_BUFFER_ALLOC) + 1); + FASTA_BUFFER_ALLOC * + (((buffer->length + len) / FASTA_BUFFER_ALLOC) + 1); buffer->data = (char*) xrealloc(buffer->data, buffer->alloc); } @@ -329,11 +335,11 @@ void buffer_extend(struct fasta_buffer_s * buffer, char * buf, unsigned long len void fasta_truncate_header(fasta_handle h, bool truncateatspace) { /* Truncate the zero-terminated header string by inserting a new - terminator (zero byte) at the first space (if truncateatspace) - or first linefeed. */ + terminator (zero byte) at the first space/tab character + (if truncateatspace) or first linefeed. */ if (truncateatspace) - h->header_buffer.length = strcspn(h->header_buffer.data, " \n"); + h->header_buffer.length = strcspn(h->header_buffer.data, " \t\n"); else h->header_buffer.length = strcspn(h->header_buffer.data, "\n"); @@ -406,6 +412,8 @@ bool fasta_next(fasta_handle h, bool truncateatspace, char * char_mapping) { + h->lineno_start = h->lineno; + h->header_buffer.length = 0; h->sequence_buffer.length = 0; @@ -490,7 +498,12 @@ bool fasta_next(fasta_handle h, #ifdef HAVE_ZLIB_H if (h->format == FORMAT_GZIP) - h->file_position = gzoffset(h->fp_gz); + { + /* Circumvent the missing gzoffset function in zlib 1.2.3 and earlier */ + int fd = dup(fileno(h->fp)); + h->file_position = lseek(fd, 0, SEEK_CUR); + close(fd); + } else #endif h->file_position = ftell(h->fp); @@ -500,7 +513,7 @@ bool fasta_next(fasta_handle h, long fasta_get_abundance(fasta_handle h) { - return abundance_get(h->abundance, h->header_buffer.data); + return abundance_get(global_abundance, h->header_buffer.data); } unsigned long fasta_get_position(fasta_handle h) @@ -515,7 +528,7 @@ unsigned long fasta_get_size(fasta_handle h) unsigned long fasta_get_lineno(fasta_handle h) { - return h->lineno; + return h->lineno_start; } unsigned long fasta_get_seqno(fasta_handle h) @@ -543,3 +556,158 @@ char * fasta_get_sequence(fasta_handle h) return h->sequence_buffer.data; } + +/* fasta output */ + +void fasta_print_header(FILE * fp, const char * hdr) +{ + fprintf(fp, ">%s\n", hdr); +} + +void fasta_print_sequence(FILE * fp, char * seq, unsigned long len, int width) +{ + /* + The actual length of the sequence may be longer than "len", but only + "len" characters are printed. + + Specify width of lines - zero (or <1) means linearize (all on one line). + */ + + if (width < 1) + fprintf(fp, "%.*s\n", (int)(len), seq); + else + { + long rest = len; + for(unsigned long i=0; i"); + if (opt_relabel || opt_relabel_sha1 || opt_relabel_md5) + { + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp, seq, len); + else if (opt_relabel_md5) + fprint_seq_digest_md5(fp, seq, len); + else + fprintf(fp, "%s%d", opt_relabel, ordinal); + + if (opt_sizeout) + fprintf(fp, ";size=%u;", abundance); + + if (opt_relabel_keep) + fprintf(fp, " %s", header); + } + else if (opt_sizeout) + { + abundance_fprint_header_with_size(global_abundance, + fp, + header, + header_len, + abundance); + } + else if (opt_xsize) + { + abundance_fprint_header_strip_size(global_abundance, + fp, + header, + header_len); + } + else + { + fprintf(fp, "%s", header); + } + fprintf(fp, "\n"); + + fasta_print_sequence(fp, seq, len, opt_fasta_width); +} + +void fasta_print_db_relabel(FILE * fp, + unsigned long seqno, + int ordinal) +{ + fasta_print_relabel(fp, + db_getsequence(seqno), + db_getsequencelen(seqno), + db_getheader(seqno), + db_getheaderlen(seqno), + db_getabundance(seqno), + ordinal); +} + +void fasta_print_db_sequence(FILE * fp, unsigned long seqno) +{ + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); +} + +void fasta_print_db(FILE * fp, unsigned long seqno) +{ + char * hdr = db_getheader(seqno); + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + + fasta_print_header(fp, hdr); + fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); +} + +void fasta_print_db_size(FILE * fp, unsigned long seqno, unsigned long size) +{ + char * hdr = db_getheader(seqno); + int hdrlen = db_getheaderlen(seqno); + + fprintf(fp, ">"); + abundance_fprint_header_with_size(global_abundance, + fp, + hdr, + hdrlen, + size); + fprintf(fp, "\n"); + + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + + fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); +} + +void fasta_print_db_strip_size(FILE * fp, unsigned long seqno) +{ + /* write FASTA but remove abundance information, as with --xsize option */ + + char * hdr = db_getheader(seqno); + int hdrlen = db_getheaderlen(seqno); + + fprintf(fp, ">"); + abundance_fprint_header_strip_size(global_abundance, + fp, + hdr, + hdrlen); + fprintf(fp, "\n"); + + char * seq = db_getsequence(seqno); + long seqlen = db_getsequencelen(seqno); + + fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); +} + diff --git a/source/vsearch_src/fasta.h b/source/vsearch_src/fasta.h old mode 100644 new mode 100755 index e1f718bd..df5c4c72 --- a/source/vsearch_src/fasta.h +++ b/source/vsearch_src/fasta.h @@ -78,8 +78,6 @@ struct fasta_s BZFILE * fp_bz; #endif - abundance_t * abundance; - struct fasta_buffer_s file_buffer; struct fasta_buffer_s header_buffer; struct fasta_buffer_s sequence_buffer; @@ -88,6 +86,7 @@ struct fasta_s unsigned long file_position; unsigned long lineno; + unsigned long lineno_start; long seqno; unsigned long stripped_all; @@ -98,6 +97,8 @@ struct fasta_s typedef struct fasta_s * fasta_handle; +/* fasta input */ + fasta_handle fasta_open(const char * filename); void fasta_close(fasta_handle h); bool fasta_next(fasta_handle h, @@ -112,3 +113,32 @@ char * fasta_get_sequence(fasta_handle h); unsigned long fasta_get_header_length(fasta_handle h); unsigned long fasta_get_sequence_length(fasta_handle h); long fasta_get_abundance(fasta_handle h); + +/* fasta output */ + +void fasta_print_header(FILE * fp, const char * hdr); + +void fasta_print_sequence(FILE * fp, char * seq, + unsigned long len, int width); + +void fasta_print(FILE * fp, const char * hdr, + char * seq, unsigned long len); + +void fasta_print_relabel(FILE * fp, + char * seq, + int len, + char * header, + int header_len, + int abundance, + int ordinal); + +void fasta_print_db(FILE * fp, unsigned long seqno); + +void fasta_print_db_sequence(FILE * fp, unsigned long seqno); + +void fasta_print_db_size(FILE * fp, unsigned long seqno, + unsigned long size); + +void fasta_print_db_strip_size(FILE * fp, unsigned long seqno); + +void fasta_print_db_relabel(FILE * fp, unsigned long seqno, int ordinal); diff --git a/source/vsearch_src/fastq.cc b/source/vsearch_src/fastq.cc old mode 100644 new mode 100755 index bd7420d7..f44d5902 --- a/source/vsearch_src/fastq.cc +++ b/source/vsearch_src/fastq.cc @@ -84,7 +84,7 @@ static char map_identity[256]; void fastq_fatal(unsigned long lineno, const char * msg) { char * string; - if (asprintf(& string, + if (sprintf(string, "Invalid line %lu in FASTQ file: %s", lineno, msg) == -1) @@ -136,11 +136,11 @@ void buffer_makespace(struct fastq_buffer_s * buffer, unsigned long x) void buffer_truncate(struct fastq_buffer_s * buffer, bool truncateatspace) { /* Truncate the zero-terminated header string by inserting a new - terminator (zero byte) at the first space (if truncateatspace) - or first linefeed. */ + terminator (zero byte) at the first space/tab character + (if truncateatspace) or first linefeed. */ if (truncateatspace) - buffer->length = strcspn(buffer->data, " \n"); + buffer->length = strcspn(buffer->data, " \t\n"); else buffer->length = strcspn(buffer->data, "\n"); @@ -178,10 +178,11 @@ fastq_handle fastq_open(const char * filename) if (h->format == FORMAT_GZIP) { - /* GZIP: Close ordinary file and open again as gzipped file */ + /* GZIP: Keep original file open, then open as bzipped file as well */ #ifdef HAVE_ZLIB_H - fclose(h->fp); - if (! (h->fp_gz = gzopen(filename, "rb"))) + if (!gz_lib) + fatal("Files compressed with gzip are not supported"); + if (! (h->fp_gz = (*gzdopen_p)(fileno(h->fp), "rb"))) fatal("Unable to open gzip compressed fastq file (%s)", filename); #else fatal("Files compressed with gzip are not supported"); @@ -192,9 +193,12 @@ fastq_handle fastq_open(const char * filename) { /* BZIP2: Keep original file open, then open as bzipped file as well */ #ifdef HAVE_ZLIB_H + if (!bz2_lib) + fatal("Files compressed with bzip2 are not supported"); int bzError; - if (! (h->fp_bz = BZ2_bzReadOpen(& bzError, h->fp, - BZ_VERBOSE_0, BZ_MORE_MEM, NULL, 0))) + if (! (h->fp_bz = (*BZ2_bzReadOpen_p)(& bzError, h->fp, + BZ_VERBOSE_0, BZ_MORE_MEM, + NULL, 0))) fatal("Unable to open bzip2 compressed fastq file (%s)", filename); #else fatal("Files compressed with bzip2 are not supported"); @@ -214,6 +218,7 @@ fastq_handle fastq_open(const char * filename) buffer_init(& h->quality_buffer); h->lineno = 1; + h->lineno_start = 1; h->seqno = -1; for(int i=0; i<256; i++) @@ -257,14 +262,14 @@ void fastq_close(fastq_handle h) case FORMAT_GZIP: #ifdef HAVE_ZLIB_H - gzclose(h->fp_gz); + (*gzclose_p)(h->fp_gz); h->fp_gz = 0; break; #endif case FORMAT_BZIP: #ifdef HAVE_BZLIB_H - BZ2_bzReadClose(&bz_error, h->fp_bz); + (*BZ2_bzReadClose_p)(&bz_error, h->fp_bz); h->fp_bz = 0; break; #endif @@ -285,6 +290,7 @@ void fastq_close(fastq_handle h) h->seqno = -1; free(h); + h=0; } @@ -325,9 +331,10 @@ unsigned long fastq_file_fill_buffer(fastq_handle h) case FORMAT_GZIP: #ifdef HAVE_ZLIB_H - bytes_read = gzread(h->fp_gz, - h->file_buffer.data + h->file_buffer.position, - space); + bytes_read = (*gzread_p)(h->fp_gz, + h->file_buffer.data + + h->file_buffer.position, + space); if (bytes_read < 0) fatal("Error reading gzip compressed fastq file"); break; @@ -335,11 +342,11 @@ unsigned long fastq_file_fill_buffer(fastq_handle h) case FORMAT_BZIP: #ifdef HAVE_BZLIB_H - bytes_read = BZ2_bzRead(& bzError, - h->fp_bz, - h->file_buffer.data - + h->file_buffer.position, - space); + bytes_read = (*BZ2_bzRead_p)(& bzError, + h->fp_bz, + h->file_buffer.data + + h->file_buffer.position, + space); if ((bytes_read < 0) || ! ((bzError == BZ_OK) || (bzError == BZ_STREAM_END) || @@ -449,6 +456,8 @@ bool fastq_next(fastq_handle h, h->quality_buffer.length = 0; h->quality_buffer.data[0] = 0; + h->lineno_start = h->lineno; + unsigned long rest = fastq_file_fill_buffer(h); /* check end of file */ @@ -648,7 +657,12 @@ bool fastq_next(fastq_handle h, #ifdef HAVE_ZLIB_H if (h->format == FORMAT_GZIP) - h->file_position = gzoffset(h->fp_gz); + { + /* Circumvent the missing gzoffset function in zlib 1.2.3 and earlier */ + int fd = dup(fileno(h->fp)); + h->file_position = lseek(fd, 0, SEEK_CUR); + close(fd); + } else #endif h->file_position = ftell(h->fp); @@ -680,7 +694,7 @@ unsigned long fastq_get_size(fastq_handle h) unsigned long fastq_get_lineno(fastq_handle h) { - return h->lineno; + return h->lineno_start; } unsigned long fastq_get_seqno(fastq_handle h) @@ -707,3 +721,98 @@ char * fastq_get_sequence(fastq_handle h) { return h->sequence_buffer.data; } + +void fastq_print_header(FILE * fp, char * header) +{ + fprintf(fp, "@%s\n", header); +} + +void fastq_print_sequence(FILE * fp, char * sequence) +{ + fprintf(fp, "%s\n", sequence); +} + +void fastq_print_quality(FILE * fp, char * quality) +{ + fprintf(fp, "+\n%s\n", quality); +} + +void fastq_print(FILE * fp, char * header, char * sequence, char * quality) +{ + fastq_print_header(fp, header); + fastq_print_sequence(fp, sequence); + fastq_print_quality(fp, quality); +} + +void fastq_print_with_ee(FILE * fp, char * header, + char * sequence, char * quality, double ee) +{ + fprintf(fp, "@%s;ee=%6.4lf\n", header, ee); + fastq_print_sequence(fp, sequence); + fastq_print_quality(fp, quality); +} + +void fastq_print_relabel(FILE * fp, + char * seq, + int len, + char * header, + int header_len, + char * quality, + int abundance, + int ordinal) +{ + fprintf(fp, "@"); + if (opt_relabel || opt_relabel_sha1 || opt_relabel_md5) + { + if (opt_relabel_sha1) + fprint_seq_digest_sha1(fp, seq, len); + else if (opt_relabel_md5) + fprint_seq_digest_md5(fp, seq, len); + else + fprintf(fp, "%s%d", opt_relabel, ordinal); + + if (opt_sizeout) + fprintf(fp, ";size=%u;", abundance); + + if (opt_relabel_keep) + fprintf(fp, " %s", header); + } + else if (opt_sizeout) + { + abundance_fprint_header_with_size(global_abundance, + fp, + header, + header_len, + abundance); + } + else if (opt_xsize) + { + abundance_fprint_header_strip_size(global_abundance, + fp, + header, + header_len); + } + else + { + fprintf(fp, "%s", header); + } + fprintf(fp, "\n"); + fastq_print_sequence(fp, seq); + fastq_print_quality(fp, quality); +} + +long fastq_get_abundance(fastq_handle h) +{ + return abundance_get(global_abundance, h->header_buffer.data); +} + +void fastq_print_db(FILE * fp, unsigned long seqno) +{ + char * hdr = db_getheader(seqno); + char * seq = db_getsequence(seqno); + char * qual = db_getquality(seqno); + + fastq_print_header(fp, hdr); + fastq_print_sequence(fp, seq); + fastq_print_quality(fp, qual); +} diff --git a/source/vsearch_src/fastq.h b/source/vsearch_src/fastq.h old mode 100644 new mode 100755 index 2e7ebc63..0bffae2e --- a/source/vsearch_src/fastq.h +++ b/source/vsearch_src/fastq.h @@ -88,12 +88,14 @@ struct fastq_s unsigned long file_position; unsigned long lineno; + unsigned long lineno_start; long seqno; unsigned long stripped_all; unsigned long stripped[256]; int format; + }; typedef struct fastq_s * fastq_handle; @@ -110,6 +112,24 @@ unsigned long fastq_get_seqno(fastq_handle h); char * fastq_get_header(fastq_handle h); char * fastq_get_sequence(fastq_handle h); char * fastq_get_quality(fastq_handle h); +long fastq_get_abundance(fastq_handle h); unsigned long fastq_get_header_length(fastq_handle h); unsigned long fastq_get_sequence_length(fastq_handle h); unsigned long fastq_get_quality_length(fastq_handle h); + +void fastq_print(FILE * fp, char * header, char * sequence, char * quality); + +void fastq_print_with_ee(FILE * fp, char * header, char * sequence, + char * quality, double ee); + +void fastq_print_relabel(FILE * fp, + char * seq, + int len, + char * header, + int header_len, + char * quality, + int abundance, + int ordinal); + + +void fastq_print_db(FILE * fp, unsigned long seqno); diff --git a/source/vsearch_src/fastqops.cc b/source/vsearch_src/fastqops.cc old mode 100644 new mode 100755 index 8e129584..d9330a80 --- a/source/vsearch_src/fastqops.cc +++ b/source/vsearch_src/fastqops.cc @@ -136,7 +136,7 @@ void fastq_filter() char hex_md5[LEN_HEX_DIG_MD5]; char hex_sha1[LEN_HEX_DIG_SHA1]; - while(fastq_next(h, 0, chrmap_upcase)) + while(fastq_next(h, 0, chrmap_no_change)) { long length = fastq_get_sequence_length(h); char * d = fastq_get_header(h); @@ -195,7 +195,7 @@ void fastq_filter() for (long i = 0; i < length; i++) { int qual = fastq_get_qual(q[i]); - ee += pow(10.0, - qual / 10.0); + ee += exp10(- qual / 10.0); } if ((length >= opt_fastq_minlen) && @@ -205,7 +205,9 @@ void fastq_filter() (ncount <= opt_fastq_maxns)) { /* keep the sequence */ + kept++; + if ((unsigned long)(length) < fastq_get_sequence_length(h)) { truncated++; @@ -213,63 +215,78 @@ void fastq_filter() q[length] = 0; } - if (opt_relabel) - { - (void) snprintf(header, header_alloc, - "%s%ld", opt_relabel, kept); - d = header; - } - else if (opt_relabel_md5) - { - get_hex_seq_digest_md5(hex_md5, p, length); - d = hex_md5; - } - else if (opt_relabel_sha1) - { - get_hex_seq_digest_sha1(hex_sha1, p, length); - d = hex_sha1; - } - if (opt_fastaout) { - fprint_fasta_hdr_only(fp_fastaout, d); - fprint_fasta_seq_only(fp_fastaout, p, length, opt_fasta_width); + fasta_print_relabel(fp_fastaout, + p, length, + d, fastq_get_header_length(h), + 1, kept); } if (opt_fastqout) - fprint_fastq(fp_fastqout, d, p, q, opt_eeout, ee); + { + if (opt_relabel) + { + (void) snprintf(header, header_alloc, + "%s%ld", opt_relabel, kept); + d = header; + } + else if (opt_relabel_md5) + { + get_hex_seq_digest_md5(hex_md5, p, length); + d = hex_md5; + } + else if (opt_relabel_sha1) + { + get_hex_seq_digest_sha1(hex_sha1, p, length); + d = hex_sha1; + } + + if (opt_eeout) + fastq_print_with_ee(fp_fastqout, d, p, q, ee); + else + fastq_print(fp_fastqout, d, p, q); + } } else { + /* discard the sequence */ + discarded++; + p = fastq_get_sequence(h); q = fastq_get_quality(h); - if (opt_relabel) - { - (void) snprintf(header, header_alloc, "%s%ld", opt_relabel, discarded); - d = header; - } - else if (opt_relabel_md5) - { - get_hex_seq_digest_md5(hex_md5, p, length); - d = hex_md5; - } - else if (opt_relabel_sha1) + if (opt_fastaout_discarded) { - get_hex_seq_digest_sha1(hex_sha1, p, length); - d = hex_sha1; + fasta_print_relabel(fp_fastaout_discarded, + p, length, + d, fastq_get_header_length(h), + 1, discarded); } - if (opt_fastaout_discarded) + if (opt_fastqout_discarded) { - fprint_fasta_hdr_only(fp_fastaout_discarded, d); - fprint_fasta_seq_only(fp_fastaout_discarded, - p, - length, - opt_fasta_width); + if (opt_relabel) + { + (void) snprintf(header, header_alloc, "%s%ld", opt_relabel, discarded); + d = header; + } + else if (opt_relabel_md5) + { + get_hex_seq_digest_md5(hex_md5, p, length); + d = hex_md5; + } + else if (opt_relabel_sha1) + { + get_hex_seq_digest_sha1(hex_sha1, p, length); + d = hex_sha1; + } + + if (opt_eeout) + fastq_print_with_ee(fp_fastqout_discarded, d, p, q, ee); + else + fastq_print(fp_fastqout_discarded, d, p, q); } - if (opt_fastqout_discarded) - fprint_fastq(fp_fastqout_discarded, d, p, q, opt_eeout, ee); } progress_update(fastq_get_position(h)); @@ -432,15 +449,18 @@ void fastq_chars() if (fastq_ascii == 64) { if (qmin < 64) - fprintf(stderr, "Guess: Solexa format\n"); + fprintf(stderr, "Guess: Solexa format (phred+64)\n"); else if (qmin < 66) - fprintf(stderr, "Guess: Illumina 1.3+ format\n"); + fprintf(stderr, "Guess: Illumina 1.3+ format (phred+64)\n"); else - fprintf(stderr, "Guess: Illumina 1.5+ format\n"); + fprintf(stderr, "Guess: Illumina 1.5+ format (phred+64)\n"); } else { - fprintf(stderr, "Guess: Sanger / Illumina 1.8+ format\n"); + if (qmax > 73) + fprintf(stderr, "Guess: Illumina 1.8+ format (phred+33)\n"); + else + fprintf(stderr, "Guess: Original Sanger format (phred+33)\n"); } fprintf(stderr, "\n"); @@ -486,7 +506,7 @@ void fastq_chars() double q2p(double q) { - return pow(10.0, - q / 10.0); + return exp10(- q / 10.0); } void fastq_stats() @@ -501,15 +521,22 @@ void fastq_stats() unsigned long symbols = 0; long read_length_alloc = 512; + int * read_length_table = (int*) xmalloc(sizeof(int) * read_length_alloc); memset(read_length_table, 0, sizeof(int) * read_length_alloc); + int * qual_length_table = (int*) xmalloc(sizeof(int) * read_length_alloc * 256); memset(qual_length_table, 0, sizeof(int) * read_length_alloc * 256); + int * ee_length_table = (int *) xmalloc(sizeof(int) * read_length_alloc * 4); memset(ee_length_table, 0, sizeof(int) * read_length_alloc * 4); + int * q_length_table = (int *) xmalloc(sizeof(int) * read_length_alloc * 4); memset(q_length_table, 0, sizeof(int) * read_length_alloc * 4); + double * sumee_length_table = (double *) xmalloc(sizeof(double) * read_length_alloc); + memset(sumee_length_table, 0, sizeof(double) * read_length_alloc); + long len_min = LONG_MAX; long len_max = 0; @@ -535,18 +562,27 @@ void fastq_stats() sizeof(int) * (len+1)); memset(read_length_table + read_length_alloc, 0, sizeof(int) * (len + 1 - read_length_alloc)); + qual_length_table = (int*) xrealloc(qual_length_table, sizeof(int) * (len+1) * 256); memset(qual_length_table + 256 * read_length_alloc, 0, sizeof(int) * (len + 1 - read_length_alloc) * 256); + ee_length_table = (int*) xrealloc(ee_length_table, sizeof(int) * (len+1) * 4); memset(ee_length_table + 4 * read_length_alloc, 0, sizeof(int) * (len + 1 - read_length_alloc) * 4); + q_length_table = (int*) xrealloc(q_length_table, sizeof(int) * (len+1) * 4); memset(q_length_table + 4 * read_length_alloc, 0, sizeof(int) * (len + 1 - read_length_alloc) * 4); + + sumee_length_table = (double *) xrealloc(sumee_length_table, + sizeof(double) * (len+1)); + memset(sumee_length_table + read_length_alloc, 0, + sizeof(double) * (len + 1 - read_length_alloc)); + read_length_alloc = len + 1; } @@ -583,6 +619,8 @@ void fastq_stats() ee += q2p(qual); + sumee_length_table[i] += ee; + for(int z=0; z<4; z++) { if (ee <= ee_limit[z]) @@ -619,7 +657,6 @@ void fastq_stats() long length_accum = 0; long symb_accum = 0; - double p_sum = 0.0; for(long i = 0; i <= len_max; i++) { @@ -636,33 +673,32 @@ void fastq_stats() { int qual = c - opt_fastq_ascii; x += qual_length_table[256*i + c]; - q += qual_length_table[256*i + c] * qual; - - p_sum += qual_length_table[256*i + c] * q2p(qual); e_sum += qual_length_table[256*i + c] * q2p(qual); } avgq_dist[i] = 1.0 * q / x; avgp_dist[i] = e_sum / x; - avgee_dist[i] = 1.0 * p_sum / x; - rate_dist[i] = 1.0 * p_sum / symb_accum; + avgee_dist[i] = sumee_length_table[i] / x; + rate_dist[i] = avgee_dist[i] / (i+1); } if (fp_log) { fprintf(fp_log, "\n"); + fprintf(fp_log, "\n"); fprintf(fp_log, "Read length distribution\n"); fprintf(fp_log, " L N Pct AccPct\n"); fprintf(fp_log, "------- ---------- ------- -------\n"); for(long i = len_max; i >= len_min; i--) { - fprintf(fp_log, "%2s%5ld %10d %5.1lf%% %5.1lf%%\n", - (i == len_max ? ">=" : " "), - i, - read_length_table[i], - read_length_table[i] * 100.0 / seq_count, - 100.0 * (seq_count - length_dist[i-1]) / seq_count); + if (read_length_table[i] > 0) + fprintf(fp_log, "%2s%5ld %10d %5.1lf%% %5.1lf%%\n", + (i == len_max ? ">=" : " "), + i, + read_length_table[i], + read_length_table[i] * 100.0 / seq_count, + 100.0 * (seq_count - length_dist[i-1]) / seq_count); } fprintf(fp_log, "\n"); @@ -729,14 +765,17 @@ void fastq_stats() read_percentage[z] = 100.0 * read_count[z] / seq_count; } - fprintf(fp_log, - "%5ld %7ld %7ld %7ld %7ld " - "%6.2lf%% %6.2lf%% %6.2lf%% %6.2lf%%\n", - i, - read_count[0], read_count[1], - read_count[2], read_count[3], - read_percentage[0], read_percentage[1], - read_percentage[2], read_percentage[3]); + if (read_count[0] > 0) + { + fprintf(fp_log, + "%5ld %7ld %7ld %7ld %7ld " + "%6.2lf%% %6.2lf%% %6.2lf%% %6.2lf%%\n", + i, + read_count[0], read_count[1], + read_count[2], read_count[3], + read_percentage[0], read_percentage[1], + read_percentage[2], read_percentage[3]); + } } @@ -769,6 +808,7 @@ void fastq_stats() free(qual_length_table); free(ee_length_table); free(q_length_table); + free(sumee_length_table); free(length_dist); free(symb_dist); @@ -784,8 +824,6 @@ void fastq_stats() void fastx_revcomp() { - int filetype = fastx_detect(opt_fastx_revcomp); - unsigned long buffer_alloc = 512; char * seq_buffer = (char*) xmalloc(buffer_alloc); char * qual_buffer = (char*) xmalloc(buffer_alloc); @@ -795,176 +833,182 @@ void fastx_revcomp() unsigned long suffix_length = opt_label_suffix ? strlen(opt_label_suffix) : 0; - if (filetype == 1) + fastx_handle h = fastx_open(opt_fastx_revcomp); + + if (!h) + fatal("Unrecognized file type (not proper FASTA or FASTQ format)"); + + if (opt_fastqout && ! h->is_fastq) + fatal("Cannot write FASTQ output with a FASTA input file, lacking quality scores"); + + unsigned long filesize = fastx_get_size(h); + + FILE * fp_fastaout = 0; + FILE * fp_fastqout = 0; + + if (opt_fastaout) { - /* fasta */ - fasta_handle h = fasta_open(opt_fastx_revcomp); - unsigned long filesize = fasta_get_size(h); + fp_fastaout = fopen(opt_fastaout, "w"); + if (!fp_fastaout) + fatal("Unable to open fasta output file for writing"); + } + + if (opt_fastqout) + { + fp_fastqout = fopen(opt_fastqout, "w"); + if (!fp_fastqout) + fatal("Unable to open fastq output file for writing"); + } + + if (h->is_fastq) + progress_init("Reading fastq file", filesize); + else + progress_init("Reading fasta file", filesize); + + while(fastx_next(h, 0, chrmap_no_change)) + { + /* header */ - FILE * fp_fastaout = 0; - FILE * fp_fastqout = 0; + unsigned long hlen = fastx_get_header_length(h); - if (opt_fastaout) + if (hlen + suffix_length + 1 > header_alloc) { - fp_fastaout = fopen(opt_fastaout, "w"); - if (!fp_fastaout) - fatal("Unable to open fasta output file for writing"); + header_alloc = hlen + suffix_length + 1; + header = (char*) xrealloc(header, header_alloc); } - if (opt_fastqout) - { - fp_fastqout = fopen(opt_fastqout, "w"); - if (!fp_fastqout) - fatal("Unable to open fastq output file for writing"); + char * d = fastx_get_header(h); - fprintf(stderr, "WARNING: Writing FASTQ output without base quality information; using max value\n"); - } + if (opt_label_suffix) + snprintf(header, header_alloc, "%s%s", d, opt_label_suffix); + else + snprintf(header, header_alloc, "%s", d); - progress_init("Reading fasta file", filesize); - - while(fasta_next(h, 0, chrmap_no_change)) - { - unsigned long length = fasta_get_sequence_length(h); - unsigned long hlen = fasta_get_header_length(h); - char * d = fasta_get_header(h); - char * p = fasta_get_sequence(h); - if (hlen + suffix_length + 1 > header_alloc) - header_alloc = hlen + suffix_length + 1; - header = (char*) xrealloc(header, header_alloc); + /* sequence */ - if (length + 1 > buffer_alloc) - buffer_alloc = length + 1; + unsigned long length = fastx_get_sequence_length(h); + + if (length + 1 > buffer_alloc) + { + buffer_alloc = length + 1; seq_buffer = (char *) xrealloc(seq_buffer, buffer_alloc); qual_buffer = (char *) xrealloc(qual_buffer, buffer_alloc); - - if (opt_label_suffix) - snprintf(header, header_alloc, "%s%s", d, opt_label_suffix); - else - snprintf(header, header_alloc, "%s", d); + } - reverse_complement(seq_buffer, p, length); - - /* set quality values to max */ + char * p = fastx_get_sequence(h); + reverse_complement(seq_buffer, p, length); + + + /* quality values */ + + char * q = fastx_get_quality(h); + + if (fastx_is_fastq(h)) + { + /* reverse quality values */ for(unsigned long i=0; i header_alloc) - header_alloc = hlen + suffix_length + 1; - header = (char*) xrealloc(header, header_alloc); + char * header = fastq_get_header(h); - if (length + 1 > buffer_alloc) - buffer_alloc = length + 1; - seq_buffer = (char *) xrealloc(seq_buffer, buffer_alloc); - qual_buffer = (char *) xrealloc(qual_buffer, buffer_alloc); - - if (opt_label_suffix) - snprintf(header, header_alloc, "%s%s", d, opt_label_suffix); - else - snprintf(header, header_alloc, "%s", d); + /* sequence */ - reverse_complement(seq_buffer, p, length); - - /* reverse quality values */ - for(unsigned long i=0; i opt_fastq_qmax) + { + fprintf(stderr, + "\nFASTQ quality score (%d) above maximum (%ld) in entry no %lu starting on line %lu\n", + q, + opt_fastq_qmax, + fastq_get_seqno(h) + 1, + fastq_get_lineno(h)); + fatal("FASTQ quality score too high"); + } + if (q < opt_fastq_qminout) + q = opt_fastq_qminout; + if (q > opt_fastq_qmaxout) + q = opt_fastq_qmaxout; + q += opt_fastq_asciiout; + if (q < 33) + q = 33; + if (q > 126) + q = 126; + quality[i] = q; } - progress_done(); - - if (opt_fastaout) - fclose(fp_fastaout); - - if (opt_fastqout) - fclose(fp_fastqout); + quality[length] = 0; - fastq_close(h); + fastq_print(fp_fastqout, header, sequence, quality); + + progress_update(fastq_get_position(h)); } - else - fatal("Unable to determine file type."); - free(header); - free(seq_buffer); - free(qual_buffer); + progress_done(); + + fclose(fp_fastqout); + fastq_close(h); } diff --git a/source/vsearch_src/fastqops.h b/source/vsearch_src/fastqops.h old mode 100644 new mode 100755 index 90bd3303..525155f8 --- a/source/vsearch_src/fastqops.h +++ b/source/vsearch_src/fastqops.h @@ -62,3 +62,4 @@ void fastq_chars(); void fastq_filter(); void fastq_stats(); void fastx_revcomp(); +void fastq_convert(); diff --git a/source/vsearch_src/fastxdetect.cc b/source/vsearch_src/fastxdetect.cc old mode 100644 new mode 100755 diff --git a/source/vsearch_src/fastxdetect.h b/source/vsearch_src/fastxdetect.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/linmemalign.cc b/source/vsearch_src/linmemalign.cc old mode 100644 new mode 100755 diff --git a/source/vsearch_src/linmemalign.h b/source/vsearch_src/linmemalign.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/maps.cc b/source/vsearch_src/maps.cc old mode 100644 new mode 100755 index a955bb41..043212c1 --- a/source/vsearch_src/maps.cc +++ b/source/vsearch_src/maps.cc @@ -244,7 +244,7 @@ unsigned int chrmap_4bit[256] = 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 }; -unsigned int chrmap_masked[256] = +unsigned int chrmap_mask_lower[256] = { /* @@ -274,6 +274,36 @@ unsigned int chrmap_masked[256] = 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 }; +unsigned int chrmap_mask_ambig[256] = + { + /* + + Should character be masked and not used for search ? + Mask everything but A, C, G, T and U. + Lower case letters are NOT masked. + + @ A B C D E F G H I J K L M N O + P Q R S T U V W X Y Z [ \ ] ^ _ + */ + + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 + }; + char chrmap_complement[256] = { diff --git a/source/vsearch_src/maps.h b/source/vsearch_src/maps.h old mode 100644 new mode 100755 index b2309527..fd518316 --- a/source/vsearch_src/maps.h +++ b/source/vsearch_src/maps.h @@ -66,7 +66,8 @@ extern unsigned int char_fq_action_seq[256]; extern unsigned int char_fq_action_qual[256]; extern unsigned int chrmap_2bit[256]; extern unsigned int chrmap_4bit[256]; -extern unsigned int chrmap_masked[256]; +extern unsigned int chrmap_mask_ambig[256]; +extern unsigned int chrmap_mask_lower[256]; extern char chrmap_complement[256]; extern char chrmap_normalize[256]; extern char chrmap_upcase[256]; diff --git a/source/vsearch_src/mask.cc b/source/vsearch_src/mask.cc old mode 100644 new mode 100755 index 2f319ddf..9fa5e79b --- a/source/vsearch_src/mask.cc +++ b/source/vsearch_src/mask.cc @@ -124,8 +124,16 @@ void dust(char * m, int len) int a, b; /* make a local copy of the original sequence */ - char * s = (char*) alloca(len); - memcpy(s, m, len); + char * s = (char*) alloca(len+1); + strcpy(s, m); + + if (! opt_hardmask) + { + /* convert sequence to upper case unless hardmask in effect */ + for(int i=0; i < len; i++) + m[i] = toupper(m[i]); + m[len] = 0; + } for (int i=0; i < len; i += dust_window2) { @@ -149,11 +157,10 @@ void dust(char * m, int len) #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - static pthread_t * pthread; - static pthread_attr_t attr; - static pthread_mutex_t myMutex; -#else - todo +static pthread_t * pthread; +static pthread_attr_t attr; +static pthread_mutex_t myMutex; + #endif static int nextseq = 0; @@ -161,43 +168,33 @@ static int seqcount = 0; void * dust_all_worker(void * vp) { - while(1) - { #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&myMutex); -#else - todo -#endif + while(1) + { + pthread_mutex_lock(&mutex); int seqno = nextseq; if (seqno < seqcount) { nextseq++; progress_update(seqno); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&myMutex); -#else - todo -#endif + pthread_mutex_unlock(&mutex); dust(db_getsequence(seqno), db_getsequencelen(seqno)); } else { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&myMutex); -#else - todo -#endif + pthread_mutex_unlock(&mutex); break; } } +#endif return 0; } void dust_all() { + nextseq = 0; + seqcount = db_getsequencecount(); progress_init("Masking", seqcount); #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) @@ -217,11 +214,16 @@ void dust_all() free(pthread); pthread_attr_destroy(&attr); - #else - todo + while(1){ + int seqno = nextseq; + if (seqno < seqcount){ + nextseq++; + progress_update(seqno); + dust(db_getsequence(seqno), db_getsequencelen(seqno)); + }else{ break; } + } #endif - progress_done(); } @@ -246,21 +248,21 @@ void maskfasta() if (!fp_output) fatal("Unable to open mask output file for writing"); - db_read(opt_maskfasta, opt_qmask != MASK_SOFT); + db_read(opt_maskfasta, 0); show_rusage(); seqcount = db_getsequencecount(); if (opt_qmask == MASK_DUST) dust_all(); - else if (opt_hardmask) + else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) hardmask_all(); show_rusage(); progress_init("Writing output", seqcount); for(int i=0; i opt_max_unmasked_pct) + discarded_more++; + else + { + kept++; + + if (opt_fastaout) + fasta_print_db(fp_fastaout, i); + + if (opt_fastqout) + fastq_print_db(fp_fastqout, i); + } + + progress_update(i); + } + progress_done(); + + if (!opt_quiet) + { + if (opt_min_unmasked_pct > 0.0) + fprintf(stderr, "%d sequences with less than %.1lf%% unmasked residues discarded\n", discarded_less, opt_min_unmasked_pct); + if (opt_max_unmasked_pct < 100.0) + fprintf(stderr, "%d sequences with more than %.1lf%% unmasked residues discarded\n", discarded_more, opt_max_unmasked_pct); + fprintf(stderr, "%d sequences kept\n", kept); + } + + if (opt_log) + { + if (opt_min_unmasked_pct > 0.0) + fprintf(fp_log, "%d sequences with less than %.1lf%% unmasked residues discarded\n", discarded_less, opt_min_unmasked_pct); + if (opt_max_unmasked_pct < 100.0) + fprintf(fp_log, "%d sequences with more than %.1lf%% unmasked residues discarded\n", discarded_more, opt_max_unmasked_pct); + fprintf(fp_log, "%d sequences kept\n", kept); + } + + show_rusage(); + db_free(); + + if (fp_fastaout) + fclose(fp_fastaout); + if (fp_fastqout) + fclose(fp_fastqout); +} diff --git a/source/vsearch_src/mask.h b/source/vsearch_src/mask.h old mode 100644 new mode 100755 index 9db8c968..474bfa69 --- a/source/vsearch_src/mask.h +++ b/source/vsearch_src/mask.h @@ -1,6 +1,3 @@ - -extern "C" { - /* VSEARCH: a versatile open source tool for metagenomics @@ -67,11 +64,9 @@ extern "C" { #define MASK_SOFT 2 void maskfasta(); +void fastx_mask(); + void dust(char * m, int len); void hardmask(char * m, int len); void dust_all(); void hardmask_all(); - -} - - diff --git a/source/vsearch_src/md5.c b/source/vsearch_src/md5.c old mode 100644 new mode 100755 index 7d43a603..4bcd0cd9 --- a/source/vsearch_src/md5.c +++ b/source/vsearch_src/md5.c @@ -1,295 +1,295 @@ -/* - * This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. - * MD5 Message-Digest Algorithm (RFC 1321). - * - * Homepage: - * http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 - * - * Author: - * Alexander Peslyak, better known as Solar Designer - * - * This software was written by Alexander Peslyak in 2001. No copyright is - * claimed, and the software is hereby placed in the public domain. - * In case this attempt to disclaim copyright and place the software in the - * public domain is deemed null and void, then the software is - * Copyright (c) 2001 Alexander Peslyak and it is hereby released to the - * general public under the following terms: - * - * Redistribution and use in source and binary forms, with or without - * modification, are permitted. - * - * There's ABSOLUTELY NO WARRANTY, express or implied. - * - * (This is a heavily cut-down "BSD license".) - * - * This differs from Colin Plumb's older public domain implementation in that - * no exactly 32-bit integer data type is required (any 32-bit or wider - * unsigned integer data type will do), there's no compile-time endianness - * configuration, and the function prototypes match OpenSSL's. No code from - * Colin Plumb's implementation has been reused; this comment merely compares - * the properties of the two independent implementations. - * - * The primary goals of this implementation are portability and ease of use. - * It is meant to be fast, but not as fast as possible. Some known - * optimizations are not included to reduce source code size and avoid - * compile-time configuration. - */ - -#ifndef HAVE_OPENSSL - -#include - -#include "md5.h" - -/* - * The basic MD5 functions. - * - * F and G are optimized compared to their RFC 1321 definitions for - * architectures that lack an AND-NOT instruction, just like in Colin Plumb's - * implementation. - */ -#define F(x, y, z) ((z) ^ ((x) & ((y) ^ (z)))) -#define G(x, y, z) ((y) ^ ((z) & ((x) ^ (y)))) -#define H(x, y, z) ((x) ^ (y) ^ (z)) -#define I(x, y, z) ((y) ^ ((x) | ~(z))) - -/* - * The MD5 transformation for all four rounds. - */ -#define STEP(f, a, b, c, d, x, t, s) \ - (a) += f((b), (c), (d)) + (x) + (t); \ - (a) = (((a) << (s)) | (((a) & 0xffffffff) >> (32 - (s)))); \ - (a) += (b); - -/* - * SET reads 4 input bytes in little-endian byte order and stores them - * in a properly aligned word in host byte order. - * - * The check for little-endian architectures that tolerate unaligned - * memory accesses is just an optimization. Nothing will break if it - * doesn't work. - */ -#if defined(__i386__) || defined(__x86_64__) || defined(__vax__) -#define SET(n) \ - (*(MD5_u32plus *)&ptr[(n) * 4]) -#define GET(n) \ - SET(n) -#else -#define SET(n) \ - (ctx->block[(n)] = \ - (MD5_u32plus)ptr[(n) * 4] | \ - ((MD5_u32plus)ptr[(n) * 4 + 1] << 8) | \ - ((MD5_u32plus)ptr[(n) * 4 + 2] << 16) | \ - ((MD5_u32plus)ptr[(n) * 4 + 3] << 24)) -#define GET(n) \ - (ctx->block[(n)]) -#endif - -/* - * This processes one or more 64-byte data blocks, but does NOT update - * the bit counters. There are no alignment requirements. - */ -static void *body(MD5_CTX *ctx, void *data, unsigned long size) -{ - unsigned char *ptr; - MD5_u32plus a, b, c, d; - MD5_u32plus saved_a, saved_b, saved_c, saved_d; - - ptr = data; - - a = ctx->a; - b = ctx->b; - c = ctx->c; - d = ctx->d; - - do { - saved_a = a; - saved_b = b; - saved_c = c; - saved_d = d; - -/* Round 1 */ - STEP(F, a, b, c, d, SET(0), 0xd76aa478, 7) - STEP(F, d, a, b, c, SET(1), 0xe8c7b756, 12) - STEP(F, c, d, a, b, SET(2), 0x242070db, 17) - STEP(F, b, c, d, a, SET(3), 0xc1bdceee, 22) - STEP(F, a, b, c, d, SET(4), 0xf57c0faf, 7) - STEP(F, d, a, b, c, SET(5), 0x4787c62a, 12) - STEP(F, c, d, a, b, SET(6), 0xa8304613, 17) - STEP(F, b, c, d, a, SET(7), 0xfd469501, 22) - STEP(F, a, b, c, d, SET(8), 0x698098d8, 7) - STEP(F, d, a, b, c, SET(9), 0x8b44f7af, 12) - STEP(F, c, d, a, b, SET(10), 0xffff5bb1, 17) - STEP(F, b, c, d, a, SET(11), 0x895cd7be, 22) - STEP(F, a, b, c, d, SET(12), 0x6b901122, 7) - STEP(F, d, a, b, c, SET(13), 0xfd987193, 12) - STEP(F, c, d, a, b, SET(14), 0xa679438e, 17) - STEP(F, b, c, d, a, SET(15), 0x49b40821, 22) - -/* Round 2 */ - STEP(G, a, b, c, d, GET(1), 0xf61e2562, 5) - STEP(G, d, a, b, c, GET(6), 0xc040b340, 9) - STEP(G, c, d, a, b, GET(11), 0x265e5a51, 14) - STEP(G, b, c, d, a, GET(0), 0xe9b6c7aa, 20) - STEP(G, a, b, c, d, GET(5), 0xd62f105d, 5) - STEP(G, d, a, b, c, GET(10), 0x02441453, 9) - STEP(G, c, d, a, b, GET(15), 0xd8a1e681, 14) - STEP(G, b, c, d, a, GET(4), 0xe7d3fbc8, 20) - STEP(G, a, b, c, d, GET(9), 0x21e1cde6, 5) - STEP(G, d, a, b, c, GET(14), 0xc33707d6, 9) - STEP(G, c, d, a, b, GET(3), 0xf4d50d87, 14) - STEP(G, b, c, d, a, GET(8), 0x455a14ed, 20) - STEP(G, a, b, c, d, GET(13), 0xa9e3e905, 5) - STEP(G, d, a, b, c, GET(2), 0xfcefa3f8, 9) - STEP(G, c, d, a, b, GET(7), 0x676f02d9, 14) - STEP(G, b, c, d, a, GET(12), 0x8d2a4c8a, 20) - -/* Round 3 */ - STEP(H, a, b, c, d, GET(5), 0xfffa3942, 4) - STEP(H, d, a, b, c, GET(8), 0x8771f681, 11) - STEP(H, c, d, a, b, GET(11), 0x6d9d6122, 16) - STEP(H, b, c, d, a, GET(14), 0xfde5380c, 23) - STEP(H, a, b, c, d, GET(1), 0xa4beea44, 4) - STEP(H, d, a, b, c, GET(4), 0x4bdecfa9, 11) - STEP(H, c, d, a, b, GET(7), 0xf6bb4b60, 16) - STEP(H, b, c, d, a, GET(10), 0xbebfbc70, 23) - STEP(H, a, b, c, d, GET(13), 0x289b7ec6, 4) - STEP(H, d, a, b, c, GET(0), 0xeaa127fa, 11) - STEP(H, c, d, a, b, GET(3), 0xd4ef3085, 16) - STEP(H, b, c, d, a, GET(6), 0x04881d05, 23) - STEP(H, a, b, c, d, GET(9), 0xd9d4d039, 4) - STEP(H, d, a, b, c, GET(12), 0xe6db99e5, 11) - STEP(H, c, d, a, b, GET(15), 0x1fa27cf8, 16) - STEP(H, b, c, d, a, GET(2), 0xc4ac5665, 23) - -/* Round 4 */ - STEP(I, a, b, c, d, GET(0), 0xf4292244, 6) - STEP(I, d, a, b, c, GET(7), 0x432aff97, 10) - STEP(I, c, d, a, b, GET(14), 0xab9423a7, 15) - STEP(I, b, c, d, a, GET(5), 0xfc93a039, 21) - STEP(I, a, b, c, d, GET(12), 0x655b59c3, 6) - STEP(I, d, a, b, c, GET(3), 0x8f0ccc92, 10) - STEP(I, c, d, a, b, GET(10), 0xffeff47d, 15) - STEP(I, b, c, d, a, GET(1), 0x85845dd1, 21) - STEP(I, a, b, c, d, GET(8), 0x6fa87e4f, 6) - STEP(I, d, a, b, c, GET(15), 0xfe2ce6e0, 10) - STEP(I, c, d, a, b, GET(6), 0xa3014314, 15) - STEP(I, b, c, d, a, GET(13), 0x4e0811a1, 21) - STEP(I, a, b, c, d, GET(4), 0xf7537e82, 6) - STEP(I, d, a, b, c, GET(11), 0xbd3af235, 10) - STEP(I, c, d, a, b, GET(2), 0x2ad7d2bb, 15) - STEP(I, b, c, d, a, GET(9), 0xeb86d391, 21) - - a += saved_a; - b += saved_b; - c += saved_c; - d += saved_d; - - ptr += 64; - } while (size -= 64); - - ctx->a = a; - ctx->b = b; - ctx->c = c; - ctx->d = d; - - return ptr; -} - -void MD5_Init(MD5_CTX *ctx) -{ - ctx->a = 0x67452301; - ctx->b = 0xefcdab89; - ctx->c = 0x98badcfe; - ctx->d = 0x10325476; - - ctx->lo = 0; - ctx->hi = 0; -} - -void MD5_Update(MD5_CTX *ctx, void *data, unsigned long size) -{ - MD5_u32plus saved_lo; - unsigned long used, free; - - saved_lo = ctx->lo; - if ((ctx->lo = (saved_lo + size) & 0x1fffffff) < saved_lo) - ctx->hi++; - ctx->hi += size >> 29; - - used = saved_lo & 0x3f; - - if (used) { - free = 64 - used; - - if (size < free) { - memcpy(&ctx->buffer[used], data, size); - return; - } - - memcpy(&ctx->buffer[used], data, free); - data = (unsigned char *)data + free; - size -= free; - body(ctx, ctx->buffer, 64); - } - - if (size >= 64) { - data = body(ctx, data, size & ~(unsigned long)0x3f); - size &= 0x3f; - } - - memcpy(ctx->buffer, data, size); -} - -void MD5_Final(unsigned char *result, MD5_CTX *ctx) -{ - unsigned long used, free; - - used = ctx->lo & 0x3f; - - ctx->buffer[used++] = 0x80; - - free = 64 - used; - - if (free < 8) { - memset(&ctx->buffer[used], 0, free); - body(ctx, ctx->buffer, 64); - used = 0; - free = 64; - } - - memset(&ctx->buffer[used], 0, free - 8); - - ctx->lo <<= 3; - ctx->buffer[56] = ctx->lo; - ctx->buffer[57] = ctx->lo >> 8; - ctx->buffer[58] = ctx->lo >> 16; - ctx->buffer[59] = ctx->lo >> 24; - ctx->buffer[60] = ctx->hi; - ctx->buffer[61] = ctx->hi >> 8; - ctx->buffer[62] = ctx->hi >> 16; - ctx->buffer[63] = ctx->hi >> 24; - - body(ctx, ctx->buffer, 64); - - result[0] = ctx->a; - result[1] = ctx->a >> 8; - result[2] = ctx->a >> 16; - result[3] = ctx->a >> 24; - result[4] = ctx->b; - result[5] = ctx->b >> 8; - result[6] = ctx->b >> 16; - result[7] = ctx->b >> 24; - result[8] = ctx->c; - result[9] = ctx->c >> 8; - result[10] = ctx->c >> 16; - result[11] = ctx->c >> 24; - result[12] = ctx->d; - result[13] = ctx->d >> 8; - result[14] = ctx->d >> 16; - result[15] = ctx->d >> 24; - - memset(ctx, 0, sizeof(*ctx)); -} - -#endif +/* + * This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. + * MD5 Message-Digest Algorithm (RFC 1321). + * + * Homepage: + * http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 + * + * Author: + * Alexander Peslyak, better known as Solar Designer + * + * This software was written by Alexander Peslyak in 2001. No copyright is + * claimed, and the software is hereby placed in the public domain. + * In case this attempt to disclaim copyright and place the software in the + * public domain is deemed null and void, then the software is + * Copyright (c) 2001 Alexander Peslyak and it is hereby released to the + * general public under the following terms: + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted. + * + * There's ABSOLUTELY NO WARRANTY, express or implied. + * + * (This is a heavily cut-down "BSD license".) + * + * This differs from Colin Plumb's older public domain implementation in that + * no exactly 32-bit integer data type is required (any 32-bit or wider + * unsigned integer data type will do), there's no compile-time endianness + * configuration, and the function prototypes match OpenSSL's. No code from + * Colin Plumb's implementation has been reused; this comment merely compares + * the properties of the two independent implementations. + * + * The primary goals of this implementation are portability and ease of use. + * It is meant to be fast, but not as fast as possible. Some known + * optimizations are not included to reduce source code size and avoid + * compile-time configuration. + */ + +#ifndef HAVE_OPENSSL + +#include + +#include "md5.h" + +/* + * The basic MD5 functions. + * + * F and G are optimized compared to their RFC 1321 definitions for + * architectures that lack an AND-NOT instruction, just like in Colin Plumb's + * implementation. + */ +#define F(x, y, z) ((z) ^ ((x) & ((y) ^ (z)))) +#define G(x, y, z) ((y) ^ ((z) & ((x) ^ (y)))) +#define H(x, y, z) ((x) ^ (y) ^ (z)) +#define I(x, y, z) ((y) ^ ((x) | ~(z))) + +/* + * The MD5 transformation for all four rounds. + */ +#define STEP(f, a, b, c, d, x, t, s) \ + (a) += f((b), (c), (d)) + (x) + (t); \ + (a) = (((a) << (s)) | (((a) & 0xffffffff) >> (32 - (s)))); \ + (a) += (b); + +/* + * SET reads 4 input bytes in little-endian byte order and stores them + * in a properly aligned word in host byte order. + * + * The check for little-endian architectures that tolerate unaligned + * memory accesses is just an optimization. Nothing will break if it + * doesn't work. + */ +#if defined(__i386__) || defined(__x86_64__) || defined(__vax__) +#define SET(n) \ + (*(MD5_u32plus *)&ptr[(n) * 4]) +#define GET(n) \ + SET(n) +#else +#define SET(n) \ + (ctx->block[(n)] = \ + (MD5_u32plus)ptr[(n) * 4] | \ + ((MD5_u32plus)ptr[(n) * 4 + 1] << 8) | \ + ((MD5_u32plus)ptr[(n) * 4 + 2] << 16) | \ + ((MD5_u32plus)ptr[(n) * 4 + 3] << 24)) +#define GET(n) \ + (ctx->block[(n)]) +#endif + +/* + * This processes one or more 64-byte data blocks, but does NOT update + * the bit counters. There are no alignment requirements. + */ +static void *body(MD5_CTX *ctx, void *data, unsigned long size) +{ + unsigned char *ptr; + MD5_u32plus a, b, c, d; + MD5_u32plus saved_a, saved_b, saved_c, saved_d; + + ptr = (unsigned char*) data; + + a = ctx->a; + b = ctx->b; + c = ctx->c; + d = ctx->d; + + do { + saved_a = a; + saved_b = b; + saved_c = c; + saved_d = d; + +/* Round 1 */ + STEP(F, a, b, c, d, SET(0), 0xd76aa478, 7) + STEP(F, d, a, b, c, SET(1), 0xe8c7b756, 12) + STEP(F, c, d, a, b, SET(2), 0x242070db, 17) + STEP(F, b, c, d, a, SET(3), 0xc1bdceee, 22) + STEP(F, a, b, c, d, SET(4), 0xf57c0faf, 7) + STEP(F, d, a, b, c, SET(5), 0x4787c62a, 12) + STEP(F, c, d, a, b, SET(6), 0xa8304613, 17) + STEP(F, b, c, d, a, SET(7), 0xfd469501, 22) + STEP(F, a, b, c, d, SET(8), 0x698098d8, 7) + STEP(F, d, a, b, c, SET(9), 0x8b44f7af, 12) + STEP(F, c, d, a, b, SET(10), 0xffff5bb1, 17) + STEP(F, b, c, d, a, SET(11), 0x895cd7be, 22) + STEP(F, a, b, c, d, SET(12), 0x6b901122, 7) + STEP(F, d, a, b, c, SET(13), 0xfd987193, 12) + STEP(F, c, d, a, b, SET(14), 0xa679438e, 17) + STEP(F, b, c, d, a, SET(15), 0x49b40821, 22) + +/* Round 2 */ + STEP(G, a, b, c, d, GET(1), 0xf61e2562, 5) + STEP(G, d, a, b, c, GET(6), 0xc040b340, 9) + STEP(G, c, d, a, b, GET(11), 0x265e5a51, 14) + STEP(G, b, c, d, a, GET(0), 0xe9b6c7aa, 20) + STEP(G, a, b, c, d, GET(5), 0xd62f105d, 5) + STEP(G, d, a, b, c, GET(10), 0x02441453, 9) + STEP(G, c, d, a, b, GET(15), 0xd8a1e681, 14) + STEP(G, b, c, d, a, GET(4), 0xe7d3fbc8, 20) + STEP(G, a, b, c, d, GET(9), 0x21e1cde6, 5) + STEP(G, d, a, b, c, GET(14), 0xc33707d6, 9) + STEP(G, c, d, a, b, GET(3), 0xf4d50d87, 14) + STEP(G, b, c, d, a, GET(8), 0x455a14ed, 20) + STEP(G, a, b, c, d, GET(13), 0xa9e3e905, 5) + STEP(G, d, a, b, c, GET(2), 0xfcefa3f8, 9) + STEP(G, c, d, a, b, GET(7), 0x676f02d9, 14) + STEP(G, b, c, d, a, GET(12), 0x8d2a4c8a, 20) + +/* Round 3 */ + STEP(H, a, b, c, d, GET(5), 0xfffa3942, 4) + STEP(H, d, a, b, c, GET(8), 0x8771f681, 11) + STEP(H, c, d, a, b, GET(11), 0x6d9d6122, 16) + STEP(H, b, c, d, a, GET(14), 0xfde5380c, 23) + STEP(H, a, b, c, d, GET(1), 0xa4beea44, 4) + STEP(H, d, a, b, c, GET(4), 0x4bdecfa9, 11) + STEP(H, c, d, a, b, GET(7), 0xf6bb4b60, 16) + STEP(H, b, c, d, a, GET(10), 0xbebfbc70, 23) + STEP(H, a, b, c, d, GET(13), 0x289b7ec6, 4) + STEP(H, d, a, b, c, GET(0), 0xeaa127fa, 11) + STEP(H, c, d, a, b, GET(3), 0xd4ef3085, 16) + STEP(H, b, c, d, a, GET(6), 0x04881d05, 23) + STEP(H, a, b, c, d, GET(9), 0xd9d4d039, 4) + STEP(H, d, a, b, c, GET(12), 0xe6db99e5, 11) + STEP(H, c, d, a, b, GET(15), 0x1fa27cf8, 16) + STEP(H, b, c, d, a, GET(2), 0xc4ac5665, 23) + +/* Round 4 */ + STEP(I, a, b, c, d, GET(0), 0xf4292244, 6) + STEP(I, d, a, b, c, GET(7), 0x432aff97, 10) + STEP(I, c, d, a, b, GET(14), 0xab9423a7, 15) + STEP(I, b, c, d, a, GET(5), 0xfc93a039, 21) + STEP(I, a, b, c, d, GET(12), 0x655b59c3, 6) + STEP(I, d, a, b, c, GET(3), 0x8f0ccc92, 10) + STEP(I, c, d, a, b, GET(10), 0xffeff47d, 15) + STEP(I, b, c, d, a, GET(1), 0x85845dd1, 21) + STEP(I, a, b, c, d, GET(8), 0x6fa87e4f, 6) + STEP(I, d, a, b, c, GET(15), 0xfe2ce6e0, 10) + STEP(I, c, d, a, b, GET(6), 0xa3014314, 15) + STEP(I, b, c, d, a, GET(13), 0x4e0811a1, 21) + STEP(I, a, b, c, d, GET(4), 0xf7537e82, 6) + STEP(I, d, a, b, c, GET(11), 0xbd3af235, 10) + STEP(I, c, d, a, b, GET(2), 0x2ad7d2bb, 15) + STEP(I, b, c, d, a, GET(9), 0xeb86d391, 21) + + a += saved_a; + b += saved_b; + c += saved_c; + d += saved_d; + + ptr += 64; + } while (size -= 64); + + ctx->a = a; + ctx->b = b; + ctx->c = c; + ctx->d = d; + + return ptr; +} + +void MD5_Init(MD5_CTX *ctx) +{ + ctx->a = 0x67452301; + ctx->b = 0xefcdab89; + ctx->c = 0x98badcfe; + ctx->d = 0x10325476; + + ctx->lo = 0; + ctx->hi = 0; +} + +void MD5_Update(MD5_CTX *ctx, void *data, unsigned long size) +{ + MD5_u32plus saved_lo; + unsigned long used, free; + + saved_lo = ctx->lo; + if ((ctx->lo = (saved_lo + size) & 0x1fffffff) < saved_lo) + ctx->hi++; + ctx->hi += size >> 29; + + used = saved_lo & 0x3f; + + if (used) { + free = 64 - used; + + if (size < free) { + memcpy(&ctx->buffer[used], data, size); + return; + } + + memcpy(&ctx->buffer[used], data, free); + data = (unsigned char *)data + free; + size -= free; + body(ctx, ctx->buffer, 64); + } + + if (size >= 64) { + data = body(ctx, data, size & ~(unsigned long)0x3f); + size &= 0x3f; + } + + memcpy(ctx->buffer, data, size); +} + +void MD5_Final(unsigned char *result, MD5_CTX *ctx) +{ + unsigned long used, free; + + used = ctx->lo & 0x3f; + + ctx->buffer[used++] = 0x80; + + free = 64 - used; + + if (free < 8) { + memset(&ctx->buffer[used], 0, free); + body(ctx, ctx->buffer, 64); + used = 0; + free = 64; + } + + memset(&ctx->buffer[used], 0, free - 8); + + ctx->lo <<= 3; + ctx->buffer[56] = ctx->lo; + ctx->buffer[57] = ctx->lo >> 8; + ctx->buffer[58] = ctx->lo >> 16; + ctx->buffer[59] = ctx->lo >> 24; + ctx->buffer[60] = ctx->hi; + ctx->buffer[61] = ctx->hi >> 8; + ctx->buffer[62] = ctx->hi >> 16; + ctx->buffer[63] = ctx->hi >> 24; + + body(ctx, ctx->buffer, 64); + + result[0] = ctx->a; + result[1] = ctx->a >> 8; + result[2] = ctx->a >> 16; + result[3] = ctx->a >> 24; + result[4] = ctx->b; + result[5] = ctx->b >> 8; + result[6] = ctx->b >> 16; + result[7] = ctx->b >> 24; + result[8] = ctx->c; + result[9] = ctx->c >> 8; + result[10] = ctx->c >> 16; + result[11] = ctx->c >> 24; + result[12] = ctx->d; + result[13] = ctx->d >> 8; + result[14] = ctx->d >> 16; + result[15] = ctx->d >> 24; + + memset(ctx, 0, sizeof(*ctx)); +} + +#endif diff --git a/source/vsearch_src/md5.h b/source/vsearch_src/md5.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/mergepairs.cc b/source/vsearch_src/mergepairs.cc new file mode 100755 index 00000000..edba2de2 --- /dev/null +++ b/source/vsearch_src/mergepairs.cc @@ -0,0 +1,812 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" +#include "pvalue.h" + +/* Use default PEAR scoring method and statistics */ +const int score_method = 2; +const double pvalue_level = 0.01; +const double alpha = 1.0; +const double beta = -1.0; + +/* + TODO: + - Parallelize with pthreads + - Check matching labels of forward and reverse reads (/1 and /2) +*/ + +/* static variables, needs lock */ + +static FILE * fp_fastqout = 0; +static FILE * fp_fastaout = 0; +static FILE * fp_fastqout_notmerged_fwd = 0; +static FILE * fp_fastqout_notmerged_rev = 0; +static FILE * fp_fastaout_notmerged_fwd = 0; +static FILE * fp_fastaout_notmerged_rev = 0; +static FILE * fp_eetabbedout = 0; + +static long merged = 0; +static long notmerged = 0; +static long total = 0; + +FILE * fileopenw(char * filename) +{ + FILE * fp = 0; + fp = fopen(filename, "w"); + if (!fp) + fatal("Unable to open file for writing (%s)", filename); + return fp; +} + +int get_qual(char q) +{ + int qual = q - opt_fastq_ascii; + char msg[200]; + + if (qual < opt_fastq_qmin) + { + snprintf(msg, 200, "FASTQ quality value (%d) below qmin (%ld)", + qual, opt_fastq_qmin); + fatal(msg); + } + else if (qual > opt_fastq_qmax) + { + snprintf(msg, 200, "FASTQ quality value (%d) above qmax (%ld)", + qual, opt_fastq_qmax); + fatal(msg); + } + return qual; +} + +static char merge_qual_same[128][128]; +static char merge_qual_diff[128][128]; +static double match_oes[128][128]; +static double match_score[128][128]; +static double mism_oes[128][128]; +static double mism_score[128][128]; +static double q2p[128]; +static double ambig_score; +static double ambig_oes; + +double q_to_p(double q) +{ + int x = q - opt_fastq_ascii; + if (x < 2) + return 0.75; + else + return exp10(-x/10.0); +} + +void precompute_qual() +{ + /* Precompute tables of scores etc */ + + ambig_oes = alpha * 0.25 + beta * 0.75; + + switch (score_method) + { + case 1: + ambig_score = alpha * 0.25 + beta * 0.75; + break; + case 2: + ambig_score = beta * 0.75; + break; + case 3: + ambig_score = beta; + break; + } + + for (int x = 33; x < 126; x++) + { + double px = q_to_p(x); + q2p[x] = px; + + for (int y = 33; y < 126; y++) + { + double py = q_to_p(y); + + double p, q, oes, score; + + /* Quality score equations from Edgar & Flyvbjerg (2015) */ + + /* Match */ + p = px * py / 3.0 / (1.0 - px - py + 4.0 * px * py / 3.0); + q = opt_fastq_ascii + MIN(round(-10.0*log10(p)), opt_fastq_qmaxout); + merge_qual_same[x][y] = q; + + /* Mismatch, x is highest quality */ + p = px * (1.0 - py / 3.0) / (px + py - 4.0 * px * py / 3.0); + q = opt_fastq_ascii + MIN(round(-10.0*log10(p)), opt_fastq_qmaxout); + merge_qual_diff[x][y] = q; + + /* Score weights from PEAR */ + + /* Match */ + + /* probability that they really are similar, + given that they look similar and have + error probabilites of px and py, resp. */ + + p = 1.0 - px - py + px * py * 4.0 / 3.0; + + oes = alpha * p + beta * (1.0 - p); + + switch (score_method) + { + case 1: + score = alpha * p + beta * (1.0 - p); + break; + case 2: + score = alpha * p; + break; + case 3: + score = alpha; + break; + } + + match_oes[x][y] = oes; + match_score[x][y] = score; + + /* Mismatch */ + + /* Probability that they really are different, + given that they look different and have + error probabilities of px and py, resp. */ + + p = 1.0 - px / 3.0 - py / 3.0 + px * py * 4.0 / 9.0; + + oes = (beta - alpha) * p + alpha; + + switch (score_method) + { + case 1: + score = alpha * (1.0 - p) + beta * p; + break; + case 2: + score = beta * p; + break; + case 3: + score = beta; + break; + } + + mism_oes[x][y] = oes; + mism_score[x][y] = score; + } + } +} + +void merge_sym(char * sym, char * qual, + char fwd_sym, char rev_sym, + char fwd_qual, char rev_qual) +{ + if (rev_sym == 'N') + { + * sym = fwd_sym; + * qual = fwd_qual; + } + else if (fwd_sym == 'N') + { + * sym = rev_sym; + * qual = rev_qual; + } + else if (fwd_sym == rev_sym) + { + /* agreement */ + * sym = fwd_sym; + * qual = merge_qual_same[(unsigned)fwd_qual][(unsigned)rev_qual]; + } + else + { + /* disagreement */ + if (fwd_qual > rev_qual) + { + * sym = fwd_sym; + * qual = merge_qual_diff[(unsigned)fwd_qual][(unsigned)rev_qual]; + } + else + { + * sym = rev_sym; + * qual = merge_qual_diff[(unsigned)rev_qual][(unsigned)fwd_qual]; + } + } +} + +static char * merged_sequence = 0; +static char * merged_quality = 0; +static char * merged_header = 0; + +static size_t merged_sequence_alloc = 0; +static size_t merged_header_alloc = 0; + +void keep(char * fwd_header, char * rev_header, + char * fwd_sequence, char * rev_sequence, + char * fwd_quality, char * rev_quality, + long fwd_trunc, long rev_trunc, + long offset) +{ + /* The offset is the distance between the (truncated) 3' ends of the two + sequences */ + + long rev_3prime_overhang = offset > fwd_trunc ? offset - fwd_trunc : 0; + long fwd_5prime_overhang = fwd_trunc > offset ? fwd_trunc - offset : 0; + long mergelen = fwd_trunc + rev_trunc - offset; + + if (opt_label_suffix) + { + size_t need = strlen(fwd_header) + strlen(opt_label_suffix) + 1; + if (need > merged_header_alloc) + { + merged_header_alloc = need; + merged_header = (char*)xrealloc(merged_header, merged_header_alloc); + } + } + + if ((size_t)(mergelen + 1) > merged_sequence_alloc) + { + merged_sequence_alloc = mergelen + 1; + merged_sequence = (char*)xrealloc(merged_sequence,merged_sequence_alloc); + merged_quality = (char*)xrealloc(merged_quality,merged_sequence_alloc); + } + + char * merged_sequence = (char *) xmalloc(mergelen + 1); + char * merged_quality = (char *) xmalloc(mergelen + 1); + + double ee = 0.0; + + long fwd_pos = 0; + long rev_pos = rev_trunc - 1 + fwd_5prime_overhang - rev_3prime_overhang; + + long fwd_errors = 0; + long rev_errors = 0; + + for(long i = 0; i < mergelen; i++) + { + bool has_fwd = 0; + if ((fwd_pos >= 0) && (fwd_pos < fwd_trunc)) + has_fwd = 1; + + bool has_rev = 0; + if ((rev_pos >= 0) && (rev_pos < rev_trunc)) + has_rev = 1; + + char sym; + char qual; + + if (has_fwd && has_rev) + { + char fwd_sym = fwd_sequence[fwd_pos]; + char rev_sym = chrmap_complement[(int)(rev_sequence[rev_pos])]; + char fwd_qual = fwd_quality[fwd_pos]; + char rev_qual = rev_quality[rev_pos]; + + merge_sym(& sym, + & qual, + fwd_qual < 2 ? 'N' : fwd_sym, + rev_qual < 2 ? 'N' : rev_sym, + fwd_qual, + rev_qual); + + if (sym != fwd_sym) + fwd_errors++; + if (sym != rev_sym) + rev_errors++; + } + else if (has_fwd) + { + sym = fwd_sequence[fwd_pos]; + qual = fwd_quality[fwd_pos]; + } + else + { + sym = chrmap_complement[(int)(rev_sequence[rev_pos])]; + qual = rev_quality[rev_pos]; + } + + merged_sequence[i] = sym; + merged_quality[i] = qual; + + ee += q2p[(unsigned)qual]; + + fwd_pos++; + rev_pos--; + } + + merged_sequence[mergelen] = 0; + merged_quality[mergelen] = 0; + + if (ee <= opt_fastq_maxee) + { + merged++; + + if (opt_label_suffix) + (void) sprintf(merged_header, "%s%s", fwd_header, opt_label_suffix); + + if (opt_fastqout) + { + if (opt_fastq_eeout) + fastq_print_with_ee(fp_fastqout, + opt_label_suffix ? merged_header : fwd_header, + merged_sequence, + merged_quality, + ee); + else + fastq_print(fp_fastqout, + opt_label_suffix ? merged_header : fwd_header, + merged_sequence, + merged_quality); + } + + if (opt_fastaout) + fasta_print(fp_fastaout, + opt_label_suffix ? merged_header : fwd_header, + merged_sequence, + mergelen); + + if (opt_eetabbedout) + { + double ee_fwd = 0.0; + for(int i=0; i rev_trunc ? i - rev_trunc : 0; + long rev_3prime_overhang = i > fwd_trunc ? i - fwd_trunc : 0; + long overlap = i - fwd_3prime_overhang - rev_3prime_overhang; + long diffs = 0; + long fwd_pos_start = fwd_trunc - fwd_3prime_overhang - 1; + long rev_pos_start = rev_trunc - rev_3prime_overhang - overlap; + + double score = overlap_score(fwd_sequence, rev_sequence, + fwd_quality, rev_quality, + fwd_pos_start, rev_pos_start, + overlap, + & diffs); + + if ((diffs <= opt_fastq_maxdiffs) && (score > best_score)) + { + best_score = score; + best_i = i; + } + } + + /* compute oes for best alignment */ + + if (best_score > 0.0) + { + long i = best_i; + long fwd_3prime_overhang = i > rev_trunc ? i - rev_trunc : 0; + long rev_3prime_overhang = i > fwd_trunc ? i - fwd_trunc : 0; + long overlap = i - fwd_3prime_overhang - rev_3prime_overhang; + long fwd_pos_start = fwd_trunc - fwd_3prime_overhang - 1; + long rev_pos_start = rev_trunc - rev_3prime_overhang - overlap; + + best_oes = overlap_oes(fwd_sequence, rev_sequence, + fwd_quality, rev_quality, + fwd_pos_start, rev_pos_start, + overlap); + } + + /* Statistical test as in PEAR */ + + const int basefreqpct = (int) (0.25 * 100.0); + + int overlapregion = opt_fastq_minovlen; + if (overlapregion > 99) + overlapregion = 99; + if (overlapregion < 1) + overlapregion = 1; + + double cutoff; + + if (pvalue_level == 1.0) + { + cutoff = DBL_MIN; + } + else if (pvalue_level == 0.01) + { + cutoff = precomp2_01[overlapregion][basefreqpct]; + } + else if (pvalue_level == 0.05) + { + cutoff = precomp2_05[overlapregion][basefreqpct]; + } + else if (pvalue_level == 0.001) + { + cutoff = precomp2_001[overlapregion][basefreqpct]; + } + else + { + cutoff = precomp2_0001[overlapregion][basefreqpct]; + } + + if (best_oes <= cutoff) + best_i = 0; + + return best_i; +} + +void fastq_mergepairs() +{ + /* open input files */ + + fastq_handle fastq_fwd = fastq_open(opt_fastq_mergepairs); + fastq_handle fastq_rev = fastq_open(opt_reverse); + + /* open output files */ + + if (opt_fastqout) + fp_fastqout = fileopenw(opt_fastqout); + if (opt_fastaout) + fp_fastaout = fileopenw(opt_fastaout); + if (opt_fastqout_notmerged_fwd) + fp_fastqout_notmerged_fwd = fileopenw(opt_fastqout_notmerged_fwd); + if (opt_fastqout_notmerged_rev) + fp_fastqout_notmerged_rev = fileopenw(opt_fastqout_notmerged_rev); + if (opt_fastaout_notmerged_fwd) + fp_fastaout_notmerged_fwd = fileopenw(opt_fastaout_notmerged_fwd); + if (opt_fastaout_notmerged_rev) + fp_fastaout_notmerged_rev = fileopenw(opt_fastaout_notmerged_rev); + if (opt_eetabbedout) + fp_eetabbedout = fileopenw(opt_eetabbedout); + + /* precompute merged quality values */ + + precompute_qual(); + + /* init progress */ + + unsigned long filesize = fastq_get_size(fastq_fwd); + progress_init("Merging reads", filesize); + + /* start loop */ + + while(fastq_next(fastq_fwd, 1, chrmap_upcase)) + { + if (! fastq_next(fastq_rev, 1, chrmap_upcase)) + fatal("More forward reads than reverse reads"); + + /* TODO: Check that labels match: label/1 and label/2 */ + + total++; + + long fwd_length = fastq_get_sequence_length(fastq_fwd); + long rev_length = fastq_get_sequence_length(fastq_rev); + + char * fwd_header = fastq_get_header(fastq_fwd); + char * rev_header = fastq_get_header(fastq_rev); + + char * fwd_sequence = fastq_get_sequence(fastq_fwd); + char * rev_sequence = fastq_get_sequence(fastq_rev); + + char * fwd_quality = fastq_get_quality(fastq_fwd); + char * rev_quality = fastq_get_quality(fastq_rev); + + long fwd_trunc = fwd_length; + long rev_trunc = rev_length; + + bool skip = 0; + + /* check length */ + + if ((fwd_length < opt_fastq_minlen) || + (rev_length < opt_fastq_minlen)) + skip = 1; + + /* truncate sequences by quality */ + + if (!skip) + { + for (long i = 0; i < fwd_length; i++) + if (get_qual(fwd_quality[i]) <= opt_fastq_truncqual) + { + fwd_trunc = i; + break; + } + if (fwd_trunc < opt_fastq_minlen) + skip = 1; + } + + if (!skip) + { + for (long i = 0; i < rev_length; i++) + if (get_qual(rev_quality[i]) <= opt_fastq_truncqual) + { + rev_trunc = i; + break; + } + if (rev_trunc < opt_fastq_minlen) + skip = 1; + } + + /* count n's */ + + /* replace quality of N's by zero */ + + if (!skip) + { + long fwd_ncount = 0; + for (long i = 0; i < fwd_trunc; i++) + if (fwd_sequence[i] == 'N') + { + fwd_quality[i] = opt_fastq_ascii; + fwd_ncount++; + } + if (fwd_ncount > opt_fastq_maxns) + skip = 1; + } + + if (!skip) + { + long rev_ncount = 0; + for (long i = 0; i < rev_trunc; i++) + if (rev_sequence[i] == 'N') + { + rev_quality[i] = opt_fastq_ascii; + rev_ncount++; + } + if (rev_ncount > opt_fastq_maxns) + skip = 1; + } + + long offset = 0; + + if (!skip) + { + offset = merge(fwd_sequence, rev_sequence, + fwd_quality, rev_quality, + fwd_trunc, rev_trunc); + } + + if (offset) + { + keep(fwd_header, rev_header, + fwd_sequence, rev_sequence, + fwd_quality, rev_quality, + fwd_trunc, rev_trunc, + offset); + } + else + discard(fwd_header, rev_header, + fwd_sequence, rev_sequence, + fwd_quality, rev_quality, + fwd_length, rev_length); + + progress_update(fastq_get_position(fastq_fwd)); + } + + progress_done(); + + if (fastq_next(fastq_rev, 1, chrmap_upcase)) + fatal("More reverse reads than forward reads"); + + fprintf(stderr, + "%lu read pairs total\n", + total); + + fprintf(stderr, + "%lu pairs merged (%.1lf%%) and %lu pairs not merged (%.1lf%%).\n", + merged, + 100.0 * merged / total, + notmerged, + 100.0 * notmerged / total); + + if (opt_eetabbedout) + fclose(fp_eetabbedout); + if (opt_fastaout_notmerged_rev) + fclose(fp_fastaout_notmerged_rev); + if (opt_fastaout_notmerged_fwd) + fclose(fp_fastaout_notmerged_fwd); + if (opt_fastqout_notmerged_rev) + fclose(fp_fastqout_notmerged_rev); + if (opt_fastqout_notmerged_fwd) + fclose(fp_fastqout_notmerged_fwd); + if (opt_fastaout) + fclose(fp_fastaout); + if (opt_fastqout) + fclose(fp_fastqout); + + fastq_close(fastq_rev); + fastq_rev = 0; + fastq_close(fastq_fwd); + fastq_fwd = 0; + + if (merged_sequence) + free(merged_sequence); + if (merged_quality) + free(merged_quality); + if (merged_header) + free(merged_header); +} diff --git a/source/vsearch_src/mergepairs.h b/source/vsearch_src/mergepairs.h new file mode 100755 index 00000000..ee0cf3a0 --- /dev/null +++ b/source/vsearch_src/mergepairs.h @@ -0,0 +1,61 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void fastq_mergepairs(); diff --git a/source/vsearch_src/minheap.cc b/source/vsearch_src/minheap.cc old mode 100644 new mode 100755 index 545eca12..7885c3e9 --- a/source/vsearch_src/minheap.cc +++ b/source/vsearch_src/minheap.cc @@ -1,261 +1,267 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* implement a priority queue with a min heap binary array structure */ -/* elements with the lowest count should be at the top (root) */ - -int -elem_smaller(elem_t * a, elem_t * b) -{ - /* return 1 if a is smaller than b, 0 if equal or greater */ - if (a->count < b->count) - return 1; - else if (a->count > b->count) - return 0; - else if (a->length > b->length) - return 1; - else if (a->length < b->length) - return 0; - else if (a->seqno > b->seqno) - return 1; - else - return 0; -} - -int minheap_compare(const void * a, const void * b) -{ - elem_t * x = (elem_t*) a; - elem_t * y = (elem_t*) b; - - if (elem_smaller(x, y)) - return -1; - else - return +1; -} - -minheap_t * -minheap_init(int size) -{ - minheap_t * m = (minheap_t *) xmalloc(sizeof(minheap_t)); - m->alloc = size; - m->array = (elem_t *) xmalloc(size * sizeof(elem_t)); - m->count = 0; - return m; -} - -void -minheap_exit(minheap_t * m) -{ - free(m->array); - free(m); -} - -static int swaps = 0; - -void -minheap_replaceroot(minheap_t * m, elem_t tmp) -{ - /* remove the element at the root, then swap children up - to the root and insert tmp at suitable place */ - - /* start with root */ - int p = 0; - int c = 2*p+1; - - /* while at least one child */ - while (c < m->count) - { - /* if two children: swap with the one with smallest value */ - if ((c + 1 < m->count) && (elem_smaller(m->array + c + 1, m->array + c))) - c++; - - /* swap parent and child if child has lower value */ - if (elem_smaller(m->array + c, &tmp)) - { - m->array[p] = m->array[c]; - swaps++; - } - else - break; - - /* step down */ - p = c; - c = 2*p+1; - } - - m->array[p] = tmp; -} - - -void -minheap_add(minheap_t * m, elem_t * n) -{ - if (m->count < m->alloc) - { - /* space for another item at end; swap upwards */ - - int i = m->count++; - int p = (i-1)/2; - while ((i>0) && elem_smaller(n, m->array+p)) - { - m->array[i] = m->array[p]; - i = p; - p = (i-1)/2; - swaps++; - } - m->array[i] = *n; - } - else if (elem_smaller(m->array, n)) - { - /* replace the root if new element is larger than root */ - minheap_replaceroot(m, *n); - } -} - -#if 0 -inline int -minheap_isempty(minheap_t * m) -{ - return !m->count; -} - -inline void -minheap_empty(minheap_t * m) -{ - m->count = 0; -} -#endif - -elem_t -minheap_pop(minheap_t * m) -{ - /* return top element and restore order */ - static elem_t zero = {0,0,0}; - - if (m->count) - { - elem_t top = m->array[0]; - m->count--; - if (m->count) - { - elem_t tmp = m->array[m->count]; - minheap_replaceroot(m, tmp); - } - return top; - } - else - return zero; -} - -void -minheap_sort(minheap_t * m) -{ - qsort(m->array, m->count, sizeof(elem_t), minheap_compare); -} - -void -minheap_dump(minheap_t * m) -{ - for(int i=0; i < m->count; i++) - printf("%s%u", i>0 ? " " : "", m->array[i].count); - printf("\n"); -} - -elem_t -minheap_poplast(minheap_t * m) -{ - /* return top element and restore order */ - static elem_t zero = {0,0,0}; - - if (m->count) - return m->array[--m->count]; - else - return zero; -} - - -void -minheap_test() -{ - minheap_t * m = minheap_init(10000000); - - int samples = 10000000; - swaps = 0; - - for(int i=samples; i>=0; i--) - { - elem_t x = {(unsigned int)(random()),0,1}; - minheap_add(m, & x); - } - - minheap_sort(m); - - while(! minheap_isempty(m)) - { - elem_t x = minheap_poplast(m); - printf("%u\n", x.count); - } - - printf("Swaps: %d\n\n", swaps); - - minheap_exit(m); -} +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* implement a priority queue with a min heap binary array structure */ +/* elements with the lowest count should be at the top (root) */ + +int +elem_smaller(elem_t * a, elem_t * b) +{ + /* return 1 if a is smaller than b, 0 if equal or greater */ + if (a->count < b->count) + return 1; + else if (a->count > b->count) + return 0; + else if (a->length > b->length) + return 1; + else if (a->length < b->length) + return 0; + else if (a->seqno > b->seqno) + return 1; + else + return 0; +} + +int minheap_compare(const void * a, const void * b) +{ + elem_t * x = (elem_t*) a; + elem_t * y = (elem_t*) b; + + if (elem_smaller(x, y)) + return -1; + else + return +1; +} + +minheap_t * +minheap_init(int size) +{ + minheap_t * m = (minheap_t *) xmalloc(sizeof(minheap_t)); + m->alloc = size; + m->array = (elem_t *) xmalloc(size * sizeof(elem_t)); + m->count = 0; + return m; +} + +void +minheap_exit(minheap_t * m) +{ + free(m->array); + free(m); +} + +static int swaps = 0; + +void +minheap_replaceroot(minheap_t * m, elem_t tmp) +{ + /* remove the element at the root, then swap children up + to the root and insert tmp at suitable place */ + + /* start with root */ + int p = 0; + int c = 2*p+1; + + /* while at least one child */ + while (c < m->count) + { + /* if two children: swap with the one with smallest value */ + if ((c + 1 < m->count) && (elem_smaller(m->array + c + 1, m->array + c))) + c++; + + /* swap parent and child if child has lower value */ + if (elem_smaller(m->array + c, &tmp)) + { + m->array[p] = m->array[c]; + swaps++; + } + else + break; + + /* step down */ + p = c; + c = 2*p+1; + } + + m->array[p] = tmp; +} + + +void +minheap_add(minheap_t * m, elem_t * n) +{ + if (m->count < m->alloc) + { + /* space for another item at end; swap upwards */ + + int i = m->count++; + int p = (i-1)/2; + while ((i>0) && elem_smaller(n, m->array+p)) + { + m->array[i] = m->array[p]; + i = p; + p = (i-1)/2; + swaps++; + } + m->array[i] = *n; + } + else if (elem_smaller(m->array, n)) + { + /* replace the root if new element is larger than root */ + minheap_replaceroot(m, *n); + } +} + +#if 0 +inline int +minheap_isempty(minheap_t * m) +{ + return !m->count; +} + +inline void +minheap_empty(minheap_t * m) +{ + m->count = 0; +} +#endif + +elem_t +minheap_pop(minheap_t * m) +{ + /* return top element and restore order */ + static elem_t zero = {0,0,0}; + + if (m->count) + { + elem_t top = m->array[0]; + m->count--; + if (m->count) + { + elem_t tmp = m->array[m->count]; + minheap_replaceroot(m, tmp); + } + return top; + } + else + return zero; +} + +void +minheap_sort(minheap_t * m) +{ + qsort(m->array, m->count, sizeof(elem_t), minheap_compare); +} + +void +minheap_dump(minheap_t * m) +{ + for(int i=0; i < m->count; i++) + printf("%s%u", i>0 ? " " : "", m->array[i].count); + printf("\n"); +} + +elem_t +minheap_poplast(minheap_t * m) +{ + /* return top element and restore order */ + static elem_t zero = {0,0,0}; + + if (m->count) + return m->array[--m->count]; + else + return zero; +} + + +void +minheap_test() +{ + minheap_t * m = minheap_init(10000000); + + int samples = 10000000; + swaps = 0; + + for(int i=samples; i>=0; i--) + { + elem_t x; x.seqno = 0; x.length = 1; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + x.count = (unsigned int) (random()); +#else + x.count = (unsigned int) (rand()); +#endif + //= {(unsigned int)(random()),0,1}; + minheap_add(m, & x); + } + + minheap_sort(m); + + while(! minheap_isempty(m)) + { + elem_t x = minheap_poplast(m); + printf("%u\n", x.count); + } + + printf("Swaps: %d\n\n", swaps); + + minheap_exit(m); +} diff --git a/source/vsearch_src/minheap.h b/source/vsearch_src/minheap.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/msa.cc b/source/vsearch_src/msa.cc old mode 100644 new mode 100755 index e9a2b3a6..71aad624 --- a/source/vsearch_src/msa.cc +++ b/source/vsearch_src/msa.cc @@ -143,7 +143,7 @@ void msa_add(char c) void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, int cluster, int target_count, struct msa_target_s * target_list, - long totalabundance, abundance_t * abundance_handle) + long totalabundance) { int centroid_seqno = target_list[0].seqno; int centroid_len = db_getsequencelen(centroid_seqno); @@ -289,7 +289,7 @@ void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, { fprintf(fp_msaout, ">%s%s\n", j ? "" : "*", db_getheader(target_seqno)); - fprint_fasta_seq_only(fp_msaout, aln, alnlen, opt_fasta_width); + fasta_print_sequence(fp_msaout, aln, alnlen, opt_fasta_width); } } @@ -345,10 +345,7 @@ void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, cons[conslen] = 0; if (fp_msaout) - { - fprint_fasta_hdr_only(fp_msaout, "consensus"); - fprint_fasta_seq_only(fp_msaout, aln, alnlen, opt_fasta_width); - } + fasta_print(fp_msaout, "consensus", aln, alnlen); if (fp_consout) { @@ -356,7 +353,7 @@ void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, { /* must remove old size info first */ char * header_wo_size - = abundance_strip_size(abundance_handle, + = abundance_strip_size(global_abundance, db_getheader(centroid_seqno), db_getheaderlen(centroid_seqno)); fprintf(fp_consout, @@ -377,7 +374,7 @@ void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, fprintf(fp_consout, "\n"); - fprint_fasta_seq_only(fp_consout, cons, conslen, opt_fasta_width); + fasta_print_sequence(fp_consout, cons, conslen, opt_fasta_width); } if (fp_profile) @@ -386,7 +383,7 @@ void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, if (opt_sizeout) { char * header_wo_size - = abundance_strip_size(abundance_handle, + = abundance_strip_size(global_abundance, db_getheader(centroid_seqno), db_getheaderlen(centroid_seqno)); fprintf(fp_profile, diff --git a/source/vsearch_src/msa.h b/source/vsearch_src/msa.h old mode 100644 new mode 100755 index 6249d69c..be8377ab --- a/source/vsearch_src/msa.h +++ b/source/vsearch_src/msa.h @@ -68,4 +68,4 @@ struct msa_target_s void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, int cluster, int target_count, struct msa_target_s * target_list, - long totalabundance, abundance_t * abundance_handle); + long totalabundance); diff --git a/source/vsearch_src/pvalue.h b/source/vsearch_src/pvalue.h new file mode 100755 index 00000000..d9d59e51 --- /dev/null +++ b/source/vsearch_src/pvalue.h @@ -0,0 +1,4843 @@ +/* + Precomputed statistics for significance testing of merged sequence pairs + + These values were obtained from PEAR: + + https://github.com/xflouris/PEAR + + http://www.exelixis-lab.org/web/software/pear + + Copyright Jiajie Zhang, Kassian Kobert, Tomas Flouri & Alexandros Stamatakis + + Zhang J, Kobert K, Flouri T & Stamatakis A (2014) + PEAR: a fast and accurate Illumina Paired-End reAd mergeR + Bioinformatics, 30(5):614-20. + doi: 10.1093/bioinformatics/btt593 + + Included in vsearch with permission. +*/ + +/* + Value range from 0 to 99, precomp_05 is the table for p-value < 0.5, + precomp_05[i][j] is the proportion of match of the best + overlap, given i minimal allowed overlap, and random match q = + j/100, that will reach a p-value at least 0.05. Which means if the + user specify p = 0.05, then we observed a f, given min_0 = i and q = + j/100 if f >= precomp_05[i][j], this assembly will be kept. +*/ + +double precomp2_05[100][100] = + { + { + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0 + }, + { + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, + 99.0, 99.0, 99.0, 99.0, 99.0, 4.0, 4.0, 4.0, 5.0, 5.0, + 6.0, 6.0, 7.0, 7.0, 8.0, 9.0, 10.0, 11.0, 12.0, 13.0, + 15.0, 17.0, 19.0, 22.0, 25.0, 28.0, 31.0, 34.0, 37.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0 + }, + { + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 4.0, 4.0, 4.0, 5.0, 5.0, + 6.0, 6.0, 7.0, 7.0, 8.0, 9.0, 10.0, 11.0, 12.0, 13.0, + 15.0, 17.0, 19.0, 22.0, 25.0, 28.0, 31.0, 34.0, 37.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, + 40.0, 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60.0, 60.0, 60.0, 60.0, 60.0 + }, + { + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, -9.0, -7.0, -4.0, -2.0, 1.0, + 3.0, 6.0, 8.0, 11.0, 13.0, 16.0, 18.0, 21.0, 24.0, 26.0, + 29.0, 32.0, 36.0, 39.0, 42.0, 46.0, 49.0, 53.0, 56.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0 + }, + { + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, -9.0, -7.0, -4.0, -2.0, 1.0, + 3.0, 6.0, 8.0, 10.0, 13.0, 15.0, 18.0, 21.0, 23.0, 26.0, + 29.0, 32.0, 36.0, 39.0, 42.0, 46.0, 49.0, 53.0, 56.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0 + }, + { + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, -10.0, -7.0, -5.0, -2.0, 0.0, + 3.0, 5.0, 8.0, 10.0, 13.0, 15.0, 18.0, 21.0, 23.0, 26.0, + 29.0, 32.0, 36.0, 39.0, 42.0, 46.0, 49.0, 53.0, 56.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, + 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0 + } + }; diff --git a/source/vsearch_src/results.cc b/source/vsearch_src/results.cc old mode 100644 new mode 100755 index 7409a0bc..4a0a6309 --- a/source/vsearch_src/results.cc +++ b/source/vsearch_src/results.cc @@ -75,18 +75,20 @@ void results_show_fastapairs_one(FILE * fp, hp->nwalignment, hp->nwalignmentlength, 0); - fprint_fasta_hdr_only(fp, query_head); - fprint_fasta_seq_only(fp, qrow + hp->trim_q_left + hp->trim_t_left, - hp->internal_alignmentlength, 0); + fasta_print_header(fp, query_head); + fasta_print_sequence(fp, + qrow + hp->trim_q_left + hp->trim_t_left, + hp->internal_alignmentlength, 0); free(qrow); char * trow = align_getrow(db_getsequence(hp->target), hp->nwalignment, hp->nwalignmentlength, 1); - fprint_fasta_hdr_only(fp, db_getheader(hp->target)); - fprint_fasta_seq_only(fp, trow + hp->trim_q_left + hp->trim_t_left, - hp->internal_alignmentlength, 0); + fasta_print_header(fp, db_getheader(hp->target)); + fasta_print_sequence(fp, + trow + hp->trim_q_left + hp->trim_t_left, + hp->internal_alignmentlength, 0); free(trow); fprintf(fp, "\n"); diff --git a/source/vsearch_src/results.h b/source/vsearch_src/results.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/search.cc b/source/vsearch_src/search.cc old mode 100644 new mode 100755 index cb92e02c..ec240852 --- a/source/vsearch_src/search.cc +++ b/source/vsearch_src/search.cc @@ -1,709 +1,678 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static struct searchinfo_s * si_plus; -static struct searchinfo_s * si_minus; - - -/* global constants/data, no need for synchronization */ -static int tophits; /* the maximum number of hits to keep */ -static int seqcount; /* number of database sequences */ -static fasta_handle query_fasta_h; - -/* global data protected by mutex */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - static pthread_attr_t attr; - static pthread_t * pthread; - static pthread_mutex_t mutex_input; - static pthread_mutex_t mutex_output; -#else - todo -#endif -static int qmatches; -static int queries; -static int * dbmatched; -static FILE * fp_samout = 0; -static FILE * fp_alnout = 0; -static FILE * fp_userout = 0; -static FILE * fp_blast6out = 0; -static FILE * fp_uc = 0; -static FILE * fp_fastapairs = 0; -static FILE * fp_matched = 0; -static FILE * fp_notmatched = 0; -static FILE * fp_dbmatched = 0; -static FILE * fp_dbnotmatched = 0; - -void search_output_results(int hit_count, - struct hit * hits, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_lock(&mutex_output); -#else - todo -#endif - /* show results */ - long toreport = MIN(opt_maxhits, hit_count); - - if (fp_alnout) - results_show_alnout(fp_alnout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_samout) - results_show_samout(fp_samout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (toreport) - { - double top_hit_id = hits[0].id; - - for(int t = 0; t < toreport; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - if (fp_fastapairs) - results_show_fastapairs_one(fp_fastapairs, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_uc) - if ((t==0) || opt_uc_allhits) - results_show_uc_one(fp_uc, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - } - else if (opt_output_no_hits) - { - if (fp_uc) - results_show_uc_one(fp_uc, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - - if (hit_count) - { - if (opt_matched) - { - fprintf(fp_matched, - ">%s\n", - query_head); - fprint_fasta_seq_only(fp_matched, - qsequence, - qseqlen, - opt_fasta_width); - } - } - else - { - if (opt_notmatched) - { - fprintf(fp_notmatched, - ">%s\n", - query_head); - fprint_fasta_seq_only(fp_notmatched, - qsequence, - qseqlen, - opt_fasta_width); - } - } - - /* update matching db sequences */ - for (int i=0; i < hit_count; i++) - if (hits[i].accepted) - dbmatched[hits[i].target]++; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#else - todo -#endif -} - -int search_query(long t) -{ - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_minus+t : si_plus+t; - - /* mask query */ - if (opt_qmask == MASK_DUST) - { - dust(si->qsequence, si->qseqlen); - } - else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) - { - hardmask(si->qsequence, si->qseqlen); - } - - /* perform search */ - search_onequery(si); - } - - struct hit * hits; - int hit_count; - - search_joinhits(si_plus + t, - opt_strand > 1 ? si_minus + t : 0, - & hits, - & hit_count); - - search_output_results(hit_count, - hits, - si_plus[t].query_head, - si_plus[t].qseqlen, - si_plus[t].qsequence, - opt_strand > 1 ? si_minus[t].qsequence : 0); - - /* free memory for alignment strings */ - for(int i=0; iquery_head_len = query_head_len; - si->qseqlen = qseqlen; - si->query_no = query_no; - si->qsize = qsize; - si->strand = s; - - /* allocate more memory for header and sequence, if necessary */ - - if (si->query_head_len + 1 > si->query_head_alloc) - { - si->query_head_alloc = si->query_head_len + 2001; - si->query_head = (char*) - xrealloc(si->query_head, (size_t)(si->query_head_alloc)); - } - - if (si->qseqlen + 1 > si->seq_alloc) - { - si->seq_alloc = si->qseqlen + 2001; - si->qsequence = (char*) - xrealloc(si->qsequence, (size_t)(si->seq_alloc)); - } - } - - /* plus strand: copy header and sequence */ - strcpy(si_plus[t].query_head, qhead); - strcpy(si_plus[t].qsequence, qseq); - - /* get progress as amount of input file read */ - unsigned long progress = fasta_get_position(query_fasta_h); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); -#else - todo -#endif - - /* minus strand: copy header and reverse complementary sequence */ - if (opt_strand > 1) - { - strcpy(si_minus[t].query_head, si_plus[t].query_head); - reverse_complement(si_minus[t].qsequence, - si_plus[t].qsequence, - si_plus[t].qseqlen); - } - - int match = search_query(t); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* lock mutex for update of global data and output */ - pthread_mutex_lock(&mutex_output); -#else - todo -#endif - - /* update stats */ - queries++; - - if (match) - qmatches++; - - /* show progress */ - progress_update(progress); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#else - todo -#endif - - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_input); -#else - todo -#endif - - break; - } - } -} - -void search_thread_init(struct searchinfo_s * si) -{ - /* thread specific initialiation */ - si->uh = unique_init(); - si->kmers = (count_t *) xmalloc(seqcount * sizeof(count_t) + 32); - si->m = minheap_init(tophits); - si->hits = (struct hit *) xmalloc - (sizeof(struct hit) * (tophits) * opt_strand); - si->qsize = 1; - si->query_head_alloc = 0; - si->query_head = 0; - si->seq_alloc = 0; - si->qsequence = 0; -#ifdef COMPARENONVECTORIZED - si->nw = nw_init(); -#else - si->nw = 0; -#endif - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); -} - -void search_thread_exit(struct searchinfo_s * si) -{ - /* thread specific clean up */ - search16_exit(si->s); -#ifdef COMPARENONVECTORIZED - nw_exit(si->nw); -#endif - unique_exit(si->uh); - free(si->hits); - minheap_exit(si->m); - free(si->kmers); - if (si->query_head) - free(si->query_head); - if (si->qsequence) - free(si->qsequence); -} - - - -void * search_thread_worker(void * vp) -{ - long t = (long) vp; - search_thread_run(t); - return 0; -} - -void search_thread_worker_run() -{ - /* initialize threads, start them, join them and return */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* init and create worker threads, put them into stand-by mode */ - for(int t=0; t seqcount)) - opt_maxrejects = seqcount; - - if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) - opt_maxaccepts = seqcount; - - tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; - - if (tophits > seqcount) - tophits = seqcount; -} - -void search_done() -{ - /* clean up, global */ - dbindex_free(); - db_free(); - if (opt_matched) - fclose(fp_matched); - if (opt_notmatched) - fclose(fp_notmatched); - if (opt_fastapairs) - fclose(fp_fastapairs); - if (fp_uc) - fclose(fp_uc); - if (fp_blast6out) - fclose(fp_blast6out); - if (fp_userout) - fclose(fp_userout); - if (fp_alnout) - fclose(fp_alnout); - if (fp_samout) - fclose(fp_samout); - show_rusage(); -} - -void usearch_global(char * cmdline, char * progheader) -{ - search_prep(cmdline, progheader); - - if (opt_dbmatched) - { - fp_dbmatched = fopen(opt_dbmatched, "w"); - if (! fp_dbmatched) - fatal("Unable to open dbmatched output file for writing"); - } - - if (opt_dbnotmatched) - { - fp_dbnotmatched = fopen(opt_dbnotmatched, "w"); - if (! fp_dbnotmatched) - fatal("Unable to open dbnotmatched output file for writing"); - } - - dbmatched = (int*) xmalloc(seqcount * sizeof(int*)); - memset(dbmatched, 0, seqcount * sizeof(int*)); - - /* prepare reading of queries */ - qmatches = 0; - queries = 0; - query_fasta_h = fasta_open(opt_usearch_global); - - /* allocate memory for thread info */ - si_plus = (struct searchinfo_s *) xmalloc(opt_threads * - sizeof(struct searchinfo_s)); - if (opt_strand > 1) - si_minus = (struct searchinfo_s *) xmalloc(opt_threads * - sizeof(struct searchinfo_s)); - else - si_minus = 0; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); - - /* init mutexes for input and output */ - pthread_mutex_init(&mutex_input, NULL); - pthread_mutex_init(&mutex_output, NULL); -#else - todo -#endif - progress_init("Searching", fasta_get_size(query_fasta_h)); - search_thread_worker_run(); - progress_done(); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_destroy(&mutex_output); - pthread_mutex_destroy(&mutex_input); - - free(pthread); -#else - todo -#endif - free(si_plus); - if (si_minus) - free(si_minus); - - fasta_close(query_fasta_h); - - if (!opt_quiet) - fprintf(stderr, "Matching query sequences: %d of %d (%.2f%%)\n", - qmatches, queries, 100.0 * qmatches / queries); - - if (opt_log) - fprintf(fp_log, "Matching query sequences: %d of %d (%.2f%%)\n", - qmatches, queries, 100.0 * qmatches / queries); - - if (opt_dbmatched || opt_dbnotmatched) - { - for(long i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static struct searchinfo_s * si_plus; +static struct searchinfo_s * si_minus; + + +/* global constants/data, no need for synchronization */ +static int tophits; /* the maximum number of hits to keep */ +static int seqcount; /* number of database sequences */ +static fasta_handle query_fasta_h; + +/* global data protected by mutex */ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; +static pthread_t * pthread; +static pthread_attr_t attr; +#endif + +static int qmatches; +static int queries; +static int * dbmatched; +static FILE * fp_samout = 0; +static FILE * fp_alnout = 0; +static FILE * fp_userout = 0; +static FILE * fp_blast6out = 0; +static FILE * fp_uc = 0; +static FILE * fp_fastapairs = 0; +static FILE * fp_matched = 0; +static FILE * fp_notmatched = 0; +static FILE * fp_dbmatched = 0; +static FILE * fp_dbnotmatched = 0; + +void search_output_results(int hit_count, + struct hit * hits, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_lock(&mutex_output); +#endif + /* show results */ + long toreport = MIN(opt_maxhits, hit_count); + + if (fp_alnout) + results_show_alnout(fp_alnout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_samout) + results_show_samout(fp_samout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (toreport) + { + double top_hit_id = hits[0].id; + + for(int t = 0; t < toreport; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + if (fp_fastapairs) + results_show_fastapairs_one(fp_fastapairs, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_uc) + if ((t==0) || opt_uc_allhits) + results_show_uc_one(fp_uc, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + } + else if (opt_output_no_hits) + { + if (fp_uc) + results_show_uc_one(fp_uc, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + + if (hit_count) + { + if (opt_matched) + fasta_print(fp_matched, + query_head, + qsequence, + qseqlen); + } + else + { + if (opt_notmatched) + fasta_print(fp_notmatched, + query_head, + qsequence, + qseqlen); + } + + /* update matching db sequences */ + for (int i=0; i < hit_count; i++) + if (hits[i].accepted) + dbmatched[hits[i].target]++; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_output); +#endif +} + +int search_query(long t) +{ + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_minus+t : si_plus+t; + + /* mask query */ + if (opt_qmask == MASK_DUST) + { + dust(si->qsequence, si->qseqlen); + } + else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) + { + hardmask(si->qsequence, si->qseqlen); + } + + /* perform search */ + search_onequery(si, opt_qmask); + } + + struct hit * hits; + int hit_count; + + search_joinhits(si_plus + t, + opt_strand > 1 ? si_minus + t : 0, + & hits, + & hit_count); + + search_output_results(hit_count, + hits, + si_plus[t].query_head, + si_plus[t].qseqlen, + si_plus[t].qsequence, + opt_strand > 1 ? si_minus[t].qsequence : 0); + + /* free memory for alignment strings */ + for(int i=0; iquery_head_len = query_head_len; + si->qseqlen = qseqlen; + si->query_no = query_no; + si->qsize = qsize; + si->strand = s; + + /* allocate more memory for header and sequence, if necessary */ + + if (si->query_head_len + 1 > si->query_head_alloc) + { + si->query_head_alloc = si->query_head_len + 2001; + si->query_head = (char*) + xrealloc(si->query_head, (size_t)(si->query_head_alloc)); + } + + if (si->qseqlen + 1 > si->seq_alloc) + { + si->seq_alloc = si->qseqlen + 2001; + si->qsequence = (char*) + xrealloc(si->qsequence, (size_t)(si->seq_alloc)); + } + } + + /* plus strand: copy header and sequence */ + strcpy(si_plus[t].query_head, qhead); + strcpy(si_plus[t].qsequence, qseq); + + /* get progress as amount of input file read */ + unsigned long progress = fasta_get_position(query_fasta_h); + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); +#endif + /* minus strand: copy header and reverse complementary sequence */ + if (opt_strand > 1) + { + strcpy(si_minus[t].query_head, si_plus[t].query_head); + reverse_complement(si_minus[t].qsequence, + si_plus[t].qsequence, + si_plus[t].qseqlen); + } + + int match = search_query(t); + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + /* lock mutex for update of global data and output */ + pthread_mutex_lock(&mutex_output); +#endif + /* update stats */ + queries++; + + if (match) + qmatches++; + + /* show progress */ + progress_update(progress); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_output); +#endif + } + else + { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_unlock(&mutex_input); +#endif + break; + } + } +} + +void search_thread_init(struct searchinfo_s * si) +{ + /* thread specific initialiation */ + si->uh = unique_init(); + si->kmers = (count_t *) xmalloc(seqcount * sizeof(count_t) + 32); + si->m = minheap_init(tophits); + si->hits = (struct hit *) xmalloc + (sizeof(struct hit) * (tophits) * opt_strand); + si->qsize = 1; + si->query_head_alloc = 0; + si->query_head = 0; + si->seq_alloc = 0; + si->qsequence = 0; +#ifdef COMPARENONVECTORIZED + si->nw = nw_init(); +#else + si->nw = 0; +#endif + si->s = search16_init(opt_match, + opt_mismatch, + opt_gap_open_query_left, + opt_gap_open_target_left, + opt_gap_open_query_interior, + opt_gap_open_target_interior, + opt_gap_open_query_right, + opt_gap_open_target_right, + opt_gap_extension_query_left, + opt_gap_extension_target_left, + opt_gap_extension_query_interior, + opt_gap_extension_target_interior, + opt_gap_extension_query_right, + opt_gap_extension_target_right); +} + +void search_thread_exit(struct searchinfo_s * si) +{ + /* thread specific clean up */ + search16_exit(si->s); +#ifdef COMPARENONVECTORIZED + nw_exit(si->nw); +#endif + unique_exit(si->uh); + free(si->hits); + minheap_exit(si->m); + free(si->kmers); + if (si->query_head) + free(si->query_head); + if (si->qsequence) + free(si->qsequence); +} + + + +void * search_thread_worker(void * vp) +{ + long t = (intptr_t) vp; + search_thread_run(t); + return 0; +} + +void search_thread_worker_run() +{ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + /* initialize threads, start them, join them and return */ + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* init and create worker threads, put them into stand-by mode */ + for(int t=0; t seqcount)) + opt_maxrejects = seqcount; + + if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) + opt_maxaccepts = seqcount; + + tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; + + if (tophits > seqcount) + tophits = seqcount; +} + +void search_done() +{ + /* clean up, global */ + dbindex_free(); + db_free(); + if (opt_matched) + fclose(fp_matched); + if (opt_notmatched) + fclose(fp_notmatched); + if (opt_fastapairs) + fclose(fp_fastapairs); + if (fp_uc) + fclose(fp_uc); + if (fp_blast6out) + fclose(fp_blast6out); + if (fp_userout) + fclose(fp_userout); + if (fp_alnout) + fclose(fp_alnout); + if (fp_samout) + fclose(fp_samout); + show_rusage(); +} + +void usearch_global(char * cmdline, char * progheader) +{ + search_prep(cmdline, progheader); + + if (opt_dbmatched) + { + fp_dbmatched = fopen(opt_dbmatched, "w"); + if (! fp_dbmatched) + fatal("Unable to open dbmatched output file for writing"); + } + + if (opt_dbnotmatched) + { + fp_dbnotmatched = fopen(opt_dbnotmatched, "w"); + if (! fp_dbnotmatched) + fatal("Unable to open dbnotmatched output file for writing"); + } + + dbmatched = (int*) xmalloc(seqcount * sizeof(int*)); + memset(dbmatched, 0, seqcount * sizeof(int*)); + + /* prepare reading of queries */ + qmatches = 0; + queries = 0; + query_fasta_h = fasta_open(opt_usearch_global); + + /* allocate memory for thread info */ + si_plus = (struct searchinfo_s *) xmalloc(opt_threads * + sizeof(struct searchinfo_s)); + if (opt_strand > 1) + si_minus = (struct searchinfo_s *) xmalloc(opt_threads * + sizeof(struct searchinfo_s)); + else + si_minus = 0; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); + + /* init mutexes for input and output */ + pthread_mutex_init(&mutex_input, NULL); + pthread_mutex_init(&mutex_output, NULL); +#endif + + progress_init("Searching", fasta_get_size(query_fasta_h)); + search_thread_worker_run(); + progress_done(); + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + pthread_mutex_destroy(&mutex_output); + pthread_mutex_destroy(&mutex_input); + free(pthread); +#endif + + free(si_plus); + if (si_minus) + free(si_minus); + + fasta_close(query_fasta_h); + + if (!opt_quiet) + fprintf(stderr, "Matching query sequences: %d of %d (%.2f%%)\n", + qmatches, queries, 100.0 * qmatches / queries); + + if (opt_log) + fprintf(fp_log, "Matching query sequences: %d of %d (%.2f%%)\n", + qmatches, queries, 100.0 * qmatches / queries); + + if (opt_dbmatched || opt_dbnotmatched) + { + for(long i=0; i= opt_minwordmatches) || (count >= si->kmersamplecount); +} + inline void topscore_insert(int i, struct searchinfo_s * si) { count_t count = si->kmers[i]; /* ignore sequences with very few kmer matches */ - if (count < MINMATCHSAMPLECOUNT) - return; - - if (count < si->kmersamplecount / MINMATCHSAMPLEFREQ) + if (!search_enough_kmers(si, count)) return; unsigned int seqno = dbindex_getmapping(i); @@ -209,12 +212,16 @@ void search_topscores(struct searchinfo_s * si) if (bitmap) { - if (ssse3_present) - increment_counters_from_bitmap_ssse3(si->kmers, - bitmap, indexed_count); - else - increment_counters_from_bitmap_sse2(si->kmers, - bitmap, indexed_count); + if (ssse3_present) { + #ifdef __SSE2__ +#else + increment_counters_from_bitmap_ssse3(si->kmers, bitmap, indexed_count); +#endif + }else{ + #ifdef __SSE2__ + increment_counters_from_bitmap_sse2(si->kmers, bitmap, indexed_count); + #endif + } } else { @@ -592,7 +599,7 @@ void align_delayed(struct searchinfo_s * si) si->finalized = si->hit_count; } -void search_onequery(struct searchinfo_s * si) +void search_onequery(struct searchinfo_s * si, int seqmask) { si->hit_count = 0; @@ -619,7 +626,7 @@ void search_onequery(struct searchinfo_s * si) /* extract unique kmer samples from query*/ unique_count(si->uh, opt_wordlength, si->qseqlen, si->qsequence, - & si->kmersamplecount, & si->kmersample); + & si->kmersamplecount, & si->kmersample, seqmask); /* find database sequences with the most kmer hits */ search_topscores(si); diff --git a/source/vsearch_src/searchcore.h b/source/vsearch_src/searchcore.h old mode 100644 new mode 100755 index 9bb407f6..a8e08637 --- a/source/vsearch_src/searchcore.h +++ b/source/vsearch_src/searchcore.h @@ -63,11 +63,9 @@ /* the number of alignments that can be delayed */ #define MAXDELAYED 8 -/* minimum number of kmer matches */ -#define MINMATCHSAMPLECOUNT 6 - -/* minimum kmer match frequency */ -#define MINMATCHSAMPLEFREQ 16 +/* Default minimum number of word matches for word lengths 7-15 */ +const int minwordmatches_defaults[] = + { -1, -1, -1, -1, -1, -1, -1, 14, 12, 11, 10, 9, 8, 7, 5, 3 }; struct hit { @@ -144,7 +142,7 @@ struct searchinfo_s int finalized; }; -void search_onequery(struct searchinfo_s * si); +void search_onequery(struct searchinfo_s * si, int seqmask); struct hit * search_findbest2_byid(struct searchinfo_s * si_p, struct searchinfo_s * si_m); @@ -163,3 +161,6 @@ void search_joinhits(struct searchinfo_s * si_p, struct searchinfo_s * si_m, struct hit * * hits, int * hit_count); + +bool search_enough_kmers(struct searchinfo_s * si, + unsigned int count); diff --git a/source/vsearch_src/searchexact.cc b/source/vsearch_src/searchexact.cc new file mode 100755 index 00000000..3ade09d6 --- /dev/null +++ b/source/vsearch_src/searchexact.cc @@ -0,0 +1,717 @@ +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static struct searchinfo_s * si_plus; +static struct searchinfo_s * si_minus; + + +/* global constants/data, no need for synchronization */ +static int tophits; /* the maximum number of hits to keep */ +static int seqcount; /* number of database sequences */ +static fasta_handle query_fasta_h; + +/* global data protected by mutex */ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) +static pthread_mutex_t mutex_input; +static pthread_mutex_t mutex_output; +static pthread_t * pthread; +static pthread_attr_t attr; +#endif + +static int qmatches; +static int queries; +static int * dbmatched; +static FILE * fp_samout = 0; +static FILE * fp_alnout = 0; +static FILE * fp_userout = 0; +static FILE * fp_blast6out = 0; +static FILE * fp_uc = 0; +static FILE * fp_fastapairs = 0; +static FILE * fp_matched = 0; +static FILE * fp_notmatched = 0; +static FILE * fp_dbmatched = 0; +static FILE * fp_dbnotmatched = 0; + +void add_hit(struct searchinfo_s * si, unsigned long seqno) +{ + if (search_acceptable_unaligned(si, seqno)) + { + struct hit * hp = si->hits + si->hit_count; + si->hit_count++; + + hp->target = seqno; + hp->strand = si->strand; + + hp->count = 0; + + hp->nwscore = si->qseqlen * opt_match; + hp->nwdiff = 0; + hp->nwgaps = 0; + hp->nwindels = 0; + hp->nwalignmentlength = si->qseqlen; + hp->nwid = 100.0; + hp->matches = si->qseqlen; + hp->mismatches = 0; + + int ret = sprintf(hp->nwalignment, "%dM", si->qseqlen); + if ((ret == -1) || (!hp->nwalignment)) + fatal("Out of memory"); + + hp->internal_alignmentlength = si->qseqlen; + hp->internal_gaps = 0; + hp->internal_indels = 0; + hp->trim_q_left = 0; + hp->trim_q_right = 0; + hp->trim_t_left = 0; + hp->trim_t_right = 0; + hp->trim_aln_left = 0; + hp->trim_aln_right = 0; + + hp->id = 100.0; + hp->id0 = 100.0; + hp->id1 = 100.0; + hp->id2 = 100.0; + hp->id3 = 100.0; + hp->id4 = 100.0; + + hp->shortest = si->qseqlen; + hp->longest = si->qseqlen; + + hp->aligned = 1; + + hp->accepted = 0; + hp->rejected = 0; + hp->weak = 0; + (void) search_acceptable_aligned(si, hp); + } +} + +void search_exact_onequery(struct searchinfo_s * si) +{ + dbhash_search_info_s info; + + char * seq = si->qsequence; + unsigned long seqlen = si->qseqlen; + char * normalized = (char*) xmalloc(seqlen+1); + string_normalize(normalized, seq, seqlen); + + si->hit_count = 0; + + long ret = dbhash_search_first(normalized, seqlen, & info); + while (ret >= 0) + { + add_hit(si, ret); + ret = dbhash_search_next(&info); + } + free(normalized); +} + +void search_exact_output_results(int hit_count, + struct hit * hits, + char * query_head, + int qseqlen, + char * qsequence, + char * qsequence_rc) +{ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_mutex_lock(&mutex_output); +#endif + /* show results */ + long toreport = MIN(opt_maxhits, hit_count); + + if (fp_alnout) + results_show_alnout(fp_alnout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_samout) + results_show_samout(fp_samout, + hits, + toreport, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (toreport) + { + double top_hit_id = hits[0].id; + + for(int t = 0; t < toreport; t++) + { + struct hit * hp = hits + t; + + if (opt_top_hits_only && (hp->id < top_hit_id)) + break; + + if (fp_fastapairs) + results_show_fastapairs_one(fp_fastapairs, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_uc) + if ((t==0) || opt_uc_allhits) + results_show_uc_one(fp_uc, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + hp, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + } + else if (opt_output_no_hits) + { + if (fp_uc) + results_show_uc_one(fp_uc, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_userout) + results_show_userout_one(fp_userout, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + + if (fp_blast6out) + results_show_blast6out_one(fp_blast6out, + 0, + query_head, + qsequence, + qseqlen, + qsequence_rc); + } + + if (hit_count) + { + if (opt_matched) + fasta_print(fp_matched, + query_head, + qsequence, + qseqlen); + } + else + { + if (opt_notmatched) + fasta_print(fp_notmatched, + query_head, + qsequence, + qseqlen); + } + + /* update matching db sequences */ + for (int i=0; i < hit_count; i++) + if (hits[i].accepted) + dbmatched[hits[i].target]++; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_mutex_unlock(&mutex_output); +#endif +} + +int search_exact_query(long t) +{ + for (int s = 0; s < opt_strand; s++) + { + struct searchinfo_s * si = s ? si_minus+t : si_plus+t; + + /* mask query */ + if (opt_qmask == MASK_DUST) + { + dust(si->qsequence, si->qseqlen); + } + else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) + { + hardmask(si->qsequence, si->qseqlen); + } + + /* perform search */ + search_exact_onequery(si); + } + + struct hit * hits; + int hit_count; + + search_joinhits(si_plus + t, + opt_strand > 1 ? si_minus + t : 0, + & hits, + & hit_count); + + search_exact_output_results(hit_count, + hits, + si_plus[t].query_head, + si_plus[t].qseqlen, + si_plus[t].qsequence, + opt_strand > 1 ? si_minus[t].qsequence : 0); + + /* free memory for alignment strings */ + for(int i=0; iquery_head_len = query_head_len; + si->qseqlen = qseqlen; + si->query_no = query_no; + si->qsize = qsize; + si->strand = s; + + /* allocate more memory for header and sequence, if necessary */ + + if (si->query_head_len + 1 > si->query_head_alloc) + { + si->query_head_alloc = si->query_head_len + 2001; + si->query_head = (char*) + xrealloc(si->query_head, (size_t)(si->query_head_alloc)); + } + + if (si->qseqlen + 1 > si->seq_alloc) + { + si->seq_alloc = si->qseqlen + 2001; + si->qsequence = (char*) + xrealloc(si->qsequence, (size_t)(si->seq_alloc)); + } + } + + /* plus strand: copy header and sequence */ + strcpy(si_plus[t].query_head, qhead); + strcpy(si_plus[t].qsequence, qseq); + + /* get progress as amount of input file read */ + unsigned long progress = fasta_get_position(query_fasta_h); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + /* let other threads read input */ + pthread_mutex_unlock(&mutex_input); +#endif + /* minus strand: copy header and reverse complementary sequence */ + if (opt_strand > 1) + { + strcpy(si_minus[t].query_head, si_plus[t].query_head); + reverse_complement(si_minus[t].qsequence, + si_plus[t].qsequence, + si_plus[t].qseqlen); + } + + int match = search_exact_query(t); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + /* lock mutex for update of global data and output */ + pthread_mutex_lock(&mutex_output); +#endif + /* update stats */ + queries++; + + if (match) + qmatches++; + + /* show progress */ + progress_update(progress); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_mutex_unlock(&mutex_output); +#endif + } + else + { +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_mutex_unlock(&mutex_input); +#endif + break; + } + } +} + +void search_exact_thread_init(struct searchinfo_s * si) +{ + /* thread specific initialiation */ + si->uh = 0; + si->kmers = 0; + si->m = 0; + si->hits = (struct hit *) xmalloc + (sizeof(struct hit) * (tophits) * opt_strand); + si->qsize = 1; + si->query_head_alloc = 0; + si->query_head = 0; + si->seq_alloc = 0; + si->qsequence = 0; + si->nw = 0; + si->s = 0; +} + +void search_exact_thread_exit(struct searchinfo_s * si) +{ + /* thread specific clean up */ + free(si->hits); + if (si->query_head) + free(si->query_head); + if (si->qsequence) + free(si->qsequence); +} + +void * search_exact_thread_worker(void * vp) +{ + long t = (intptr_t) vp; + search_exact_thread_run(t); + return 0; +} + +void search_exact_thread_worker_run() +{ +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + /* initialize threads, start them, join them and return */ + + pthread_attr_init(&attr); + pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); + + /* init and create worker threads, put them into stand-by mode */ + for(int t=0; t 1) + si_minus = (struct searchinfo_s *) xmalloc(opt_threads * + sizeof(struct searchinfo_s)); + else + si_minus = 0; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); + + /* init mutexes for input and output */ + pthread_mutex_init(&mutex_input, NULL); + pthread_mutex_init(&mutex_output, NULL); +#endif + progress_init("Searching", fasta_get_size(query_fasta_h)); + search_exact_thread_worker_run(); + progress_done(); +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + pthread_mutex_destroy(&mutex_output); + pthread_mutex_destroy(&mutex_input); + + free(pthread); +#endif + + free(si_plus); + if (si_minus) + free(si_minus); + + fasta_close(query_fasta_h); + + if (!opt_quiet) + fprintf(stderr, "Matching query sequences: %d of %d (%.2f%%)\n", + qmatches, queries, 100.0 * qmatches / queries); + + if (opt_log) + fprintf(fp_log, "Matching query sequences: %d of %d (%.2f%%)\n", + qmatches, queries, 100.0 * qmatches / queries); + + if (opt_dbmatched || opt_dbnotmatched) + { + for(long i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +void search_exact(char * cmdline, char * progheader); diff --git a/source/vsearch_src/sha1.c b/source/vsearch_src/sha1.c old mode 100644 new mode 100755 diff --git a/source/vsearch_src/sha1.h b/source/vsearch_src/sha1.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/showalign.cc b/source/vsearch_src/showalign.cc old mode 100644 new mode 100755 index f2b5c231..2e977923 --- a/source/vsearch_src/showalign.cc +++ b/source/vsearch_src/showalign.cc @@ -2,7 +2,7 @@ VSEARCH: a versatile open source tool for metagenomics - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + Copyright (C) 2014-2016, Torbjorn Rognes, Frederic Mahe and Tomas Flouri All rights reserved. Contact: Torbjorn Rognes , @@ -267,6 +267,7 @@ char * align_getrow(char * seq, char * cigar, int alen, int origin) { strncpy(r, s, len); r += len; + s += len; } else { diff --git a/source/vsearch_src/showalign.h b/source/vsearch_src/showalign.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/shuffle.cc b/source/vsearch_src/shuffle.cc old mode 100644 new mode 100755 index 505f62d0..37ade2ce --- a/source/vsearch_src/shuffle.cc +++ b/source/vsearch_src/shuffle.cc @@ -100,7 +100,7 @@ void shuffle() progress_init("Writing output", passed); for(int i=0; i"); - - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp_output, seq, len); - else - fprint_seq_digest_md5(fp_output, seq, len); - - if (opt_sizeout) - fprintf(fp_output, ";size=%u;\n", size); - else - fprintf(fp_output, "\n"); - - db_fprint_fasta_seq_only(fp_output, seqno); - } - else if (opt_relabel) - { - if (opt_sizeout) - fprintf(fp_output, ">%s%d;size=%u;\n", opt_relabel, i+1, size); - else - fprintf(fp_output, ">%s%d\n", opt_relabel, i+1); - - db_fprint_fasta_seq_only(fp_output, seqno); - } - else - { - db_fprint_fasta(fp_output, seqno); - } - + fasta_print_db_relabel(fp_output, sortinfo[i].seqno, i+1); progress_update(i); } progress_done(); diff --git a/source/vsearch_src/sortbylength.h b/source/vsearch_src/sortbylength.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/sortbysize.cc b/source/vsearch_src/sortbysize.cc old mode 100644 new mode 100755 index 35579984..279db2d4 --- a/source/vsearch_src/sortbysize.cc +++ b/source/vsearch_src/sortbysize.cc @@ -156,42 +156,7 @@ void sortbysize() progress_init("Writing output", passed); for(int i=0; i"); - - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp_output, seq, len); - else - fprint_seq_digest_md5(fp_output, seq, len); - - if (opt_sizeout) - fprintf(fp_output, ";size=%u;\n", size); - else - fprintf(fp_output, "\n"); - - db_fprint_fasta_seq_only(fp_output, seqno); - } - else if (opt_relabel) - { - if (opt_sizeout) - fprintf(fp_output, ">%s%d;size=%u;\n", opt_relabel, i+1, size); - else - fprintf(fp_output, ">%s%d\n", opt_relabel, i+1); - - db_fprint_fasta_seq_only(fp_output, seqno); - } - else - { - db_fprint_fasta(fp_output, seqno); - } - + fasta_print_db_relabel(fp_output, sortinfo[i].seqno, i+1); progress_update(i); } progress_done(); diff --git a/source/vsearch_src/sortbysize.h b/source/vsearch_src/sortbysize.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/subsample.cc b/source/vsearch_src/subsample.cc old mode 100644 new mode 100755 index 61423eca..cb15f781 --- a/source/vsearch_src/subsample.cc +++ b/source/vsearch_src/subsample.cc @@ -62,13 +62,29 @@ void subsample() { - FILE * fp_output = fopen(opt_fastaout, "w"); - if (!fp_output) - fatal("Unable to open subsampling output file for writing"); + FILE * fp_fastaout = 0; + FILE * fp_fastqout = 0; + + if (opt_fastaout) + { + fp_fastaout = fopen(opt_fastaout, "w"); + if (!fp_fastaout) + fatal("Unable to open fasta output file for writing"); + } + + if (opt_fastqout) + { + fp_fastqout = fopen(opt_fastqout, "w"); + if (!fp_fastqout) + fatal("Unable to open fastq output file for writing"); + } db_read(opt_fastx_subsample, 0); show_rusage(); + if (fp_fastqout && ! db_is_fastq()) + fatal("Cannot write FASTQ output with a FASTA input file, lacking quality scores"); + int dbsequencecount = db_getsequencecount(); unsigned long mass_total = 0; @@ -132,20 +148,32 @@ void subsample() } progress_done(); - int sampled = 0; + int samples = 0; progress_init("Writing output", dbsequencecount); for(int i=0; i0) { - if (opt_sizeout) - db_fprint_fasta_with_size(fp_output, i, abundance[i]); - else if (opt_xsize) - db_fprint_fasta_strip_size(fp_output, i); - else - db_fprint_fasta(fp_output, i); - - sampled++; + samples++; + + if (opt_fastaout) + fasta_print_relabel(fp_fastaout, + db_getsequence(i), + db_getsequencelen(i), + db_getheader(i), + db_getheaderlen(i), + abundance[i], + samples); + + if (opt_fastqout) + fastq_print_relabel(fp_fastqout, + db_getsequence(i), + db_getsequencelen(i), + db_getheader(i), + db_getheaderlen(i), + db_getquality(i), + abundance[i], + samples); } progress_update(i); } @@ -153,8 +181,13 @@ void subsample() free(abundance); - fprintf(stderr, "Subsampled %lu reads from %d amplicons\n", n, sampled); + fprintf(stderr, "Subsampled %lu reads from %d amplicons\n", n, samples); db_free(); - fclose(fp_output); + + if (opt_fastaout) + fclose(fp_fastaout); + + if (opt_fastqout) + fclose(fp_fastqout); } diff --git a/source/vsearch_src/subsample.h b/source/vsearch_src/subsample.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/unique.cc b/source/vsearch_src/unique.cc old mode 100644 new mode 100755 index 4c1d899a..76fd45f0 --- a/source/vsearch_src/unique.cc +++ b/source/vsearch_src/unique.cc @@ -60,14 +60,12 @@ #include "vsearch.h" -/* Find the unique kmers or words in a given sequence. Currently the - definintion of "unique kmers" are the kmers that appear exactly once; - kmers that appear twice or more often are ignored. - Maybe the definition should be all kmers that appear in the input - sequence, but that each of those kmers shoudl appear only - once in the resulting list. - Experiments indicate that the current (first) definition gives - both the highest sensitivity and precision. */ +/* + Find the unique kmers or words in a given sequence. + Unique is now defined as all different words occuring at least once. + Earlier it was defined as those words occuring exactly once, but + that caused a problem when searching for sequences with many repeats. +*/ #define HASH CityHash64 @@ -136,7 +134,8 @@ void unique_count_bitmap(struct uhandle_s * uh, int seqlen, char * seq, unsigned int * listlen, - unsigned int * * list) + unsigned int * * list, + int seqmask) { /* if necessary, reallocate list of unique kmers */ @@ -154,12 +153,12 @@ void unique_count_bitmap(struct uhandle_s * uh, if (uh->bitmap_size < size) { - uh->bitmap = (unsigned long *) xrealloc(uh->bitmap, size >> 2UL); + uh->bitmap = (unsigned long *) xrealloc(uh->bitmap, size >> 3UL); uh->bitmap_size = size; } - memset(uh->bitmap, 0, size >> 2UL); - + memset(uh->bitmap, 0, size >> 3UL); + unsigned long bad = 0; unsigned long kmer = 0; unsigned long mask = size - 1UL; @@ -168,55 +167,44 @@ void unique_count_bitmap(struct uhandle_s * uh, char * e2 = s + seqlen; if (e2 < e1) e1 = e2; + + unsigned int * maskmap = (seqmask != MASK_NONE) ? + chrmap_mask_lower : chrmap_mask_ambig; while (s < e1) { bad <<= 2UL; - bad |= chrmap_masked[(int)(*s)]; + bad |= maskmap[(int)(*s)]; kmer <<= 2UL; kmer |= chrmap_2bit[(int)(*s++)]; } - - int candidates = 0; + + int unique = 0; while (s < e2) { bad <<= 2UL; - bad |= chrmap_masked[(int)(*s)]; + bad |= maskmap[(int)(*s)]; bad &= mask; kmer <<= 2UL; kmer |= chrmap_2bit[(int)(*s++)]; kmer &= mask; - + if (!bad) { unsigned long x = kmer >> 6UL; unsigned long y = 1UL << (kmer & 63UL); - - unsigned long uniq = uh->bitmap[2*x]; - unsigned long seen = uh->bitmap[2*x+1]; - - uh->bitmap[2*x] = (uniq & ~y) | (y & ~seen); - uh->bitmap[2*x+1] = seen | y; - - uh->list[candidates++] = kmer; + if (!(uh->bitmap[x] & y)) + { + /* not seen before */ + uh->list[unique++] = kmer; + uh->bitmap[x] |= y; + } } } - - int unique = 0; - for (int i = 0; i < candidates; i++) - { - kmer = uh->list[i]; - unsigned long x = kmer >> 6UL; - unsigned long y = 1UL << (kmer & 63UL); - - if (uh->bitmap[2*x] & y) - uh->list[unique++] = uh->list[i]; - } - *listlen = unique; *list = uh->list; } @@ -226,10 +214,9 @@ void unique_count_hash(struct uhandle_s * uh, int seqlen, char * seq, unsigned int * listlen, - unsigned int * * list) + unsigned int * * list, + int seqmask) { - unsigned long unique; - /* if necessary, reallocate hash table and list of unique kmers */ if (uh->alloc < 2*seqlen) @@ -261,25 +248,30 @@ void unique_count_hash(struct uhandle_s * uh, if (e2 < e1) e1 = e2; + unsigned int * maskmap = (seqmask != MASK_NONE) ? + chrmap_mask_lower : chrmap_mask_ambig; + while (s < e1) { bad <<= 2UL; - bad |= chrmap_masked[(int)(*s)]; + bad |= maskmap[(int)(*s)]; kmer <<= 2; kmer |= chrmap_2bit[(int)(*s++)]; } - + + unsigned long unique = 0; + while (s < e2) { bad <<= 2UL; - bad |= chrmap_masked[(int)(*s)]; + bad |= maskmap[(int)(*s)]; bad &= mask; kmer <<= 2; kmer |= chrmap_2bit[(int)(*s++)]; kmer &= mask; - + if (!bad) { /* find free appropriate bucket in hash */ @@ -287,16 +279,16 @@ void unique_count_hash(struct uhandle_s * uh, while((uh->hash[j].count) && (uh->hash[j].kmer != kmer)) j = (j + 1) & uh->hash_mask; - uh->hash[j].kmer = kmer; - uh->hash[j].count++; + if (!(uh->hash[j].count)) + { + /* not seen before */ + uh->list[unique++] = kmer; + uh->hash[j].kmer = kmer; + uh->hash[j].count = 1; + } } } - unique = 0; - for(int i=0; isize; i++) - if (uh->hash[i].count == 1) - uh->list[unique++] = uh->hash[i].kmer; - *listlen = unique; *list = uh->list; } @@ -306,12 +298,13 @@ void unique_count(struct uhandle_s * uh, int seqlen, char * seq, unsigned int * listlen, - unsigned int * * list) + unsigned int * * list, + int seqmask) { if (k<10) - unique_count_bitmap(uh, k, seqlen, seq, listlen, list); + unique_count_bitmap(uh, k, seqlen, seq, listlen, list, seqmask); else - unique_count_hash(uh, k, seqlen, seq, listlen, list); + unique_count_hash(uh, k, seqlen, seq, listlen, list, seqmask); } int unique_count_shared(struct uhandle_s * uh, @@ -330,7 +323,7 @@ int unique_count_shared(struct uhandle_s * uh, unsigned int kmer = list[i]; unsigned long x = kmer >> 6UL; unsigned long y = 1UL << (kmer & 63UL); - if (uh->bitmap[2*x] & y) + if (uh->bitmap[x] & y) count++; } } @@ -342,7 +335,7 @@ int unique_count_shared(struct uhandle_s * uh, unsigned long j = HASH((char*)&kmer, (k+3)/4) & uh->hash_mask; while((uh->hash[j].count) && (uh->hash[j].kmer != kmer)) j = (j + 1) & uh->hash_mask; - if (uh->hash[j].count == 1) + if (uh->hash[j].count) count++; } } diff --git a/source/vsearch_src/unique.h b/source/vsearch_src/unique.h old mode 100644 new mode 100755 index 557fc2f6..f9c8cebe --- a/source/vsearch_src/unique.h +++ b/source/vsearch_src/unique.h @@ -70,7 +70,8 @@ void unique_count(struct uhandle_s * uh, int seqlen, char * seq, unsigned int * listlen, - unsigned int * * list); + unsigned int * * list, + int seqmask); int unique_count_shared(struct uhandle_s * uh, int k, diff --git a/source/vsearch_src/userfields.cc b/source/vsearch_src/userfields.cc old mode 100644 new mode 100755 diff --git a/source/vsearch_src/userfields.h b/source/vsearch_src/userfields.h old mode 100644 new mode 100755 diff --git a/source/vsearch_src/util.cc b/source/vsearch_src/util.cc old mode 100644 new mode 100755 index f09fc411..00e1f9c1 --- a/source/vsearch_src/util.cc +++ b/source/vsearch_src/util.cc @@ -1,412 +1,434 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static const char * progress_prompt; -static unsigned long progress_next; -static unsigned long progress_size; -static unsigned long progress_chunk; -static const unsigned long progress_granularity = 200; - -void progress_init(const char * prompt, unsigned long size) -{ - if (! opt_quiet) - { - progress_prompt = prompt; - progress_size = size; - progress_chunk = size < progress_granularity ? - 1 : size / progress_granularity; - progress_next = 0; - fprintf(stderr, "%s %.0f%%", prompt, 0.0); - } -} - -void progress_update(unsigned long progress) -{ - if (! opt_quiet) - if (progress >= progress_next) - { - fprintf(stderr, " \r%s %.0f%%", progress_prompt, - 100.0 * progress / progress_size); - progress_next = progress + progress_chunk; - } -} - -void progress_done() -{ - if (! opt_quiet) - fprintf(stderr, " \r%s %.0f%%\n", progress_prompt, 100.0); -} - -long gcd(long a, long b) -{ - if (b == 0) - { - return a; - } - else - { - return gcd(b, a % b); - } -} - -void __attribute__((noreturn)) fatal(const char * msg) -{ - fprintf(stderr, "\n\n"); - fprintf(stderr, "fatal error: %s\n", msg); - - if (opt_log) - { - fprintf(fp_log, "\n\n"); - fprintf(fp_log, "fatal error: %s\n", msg); - } - - exit(EXIT_FAILURE); -} - -void __attribute__((noreturn)) fatal(const char * format, const char * message) -{ - fprintf(stderr, "\n\n"); - fprintf(stderr, format, message); - fprintf(stderr, "\n"); - - if (opt_log) - { - fprintf(fp_log, "\n\n"); - fprintf(fp_log, format, message); - fprintf(fp_log, "\n"); - } - - exit(EXIT_FAILURE); -} - -void * xmalloc(size_t size) -{ - const size_t alignment = 16; - void * t = 0; - if (posix_memalign(& t, alignment, size)) - fatal("Unable to allocate enough memory."); - if (!t) - fatal("Unable to allocate enough memory."); - return t; -} - -void * xrealloc(void *ptr, size_t size) -{ - if (size == 0) - size = 1; - void * t = realloc(ptr, size); - if (!t) - fatal("Unable to allocate enough memory."); - return t; -} - -char * xstrdup(const char *s) -{ - size_t len = strlen(s); - char * p = (char*) xmalloc(len+1); - return strcpy(p, s); -} - - -char * xstrchrnul(char *s, int c) -{ - char * r = strchr(s, c); - - if (r) - return r; - else - return (char *)s + strlen(s); -} - -unsigned long hash_cityhash64(char * s, unsigned long n) -{ - return CityHash64((const char*)s, n); -} - -long getusec(void) -{ - struct timeval tv; - if(gettimeofday(&tv,0) != 0) return 0; - return tv.tv_sec * 1000000 + tv.tv_usec; -} - -void show_rusage() -{ -#if 0 - struct rusage r_usage; - getrusage(RUSAGE_SELF, & r_usage); - - fprintf(stderr, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); - fprintf(stderr, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); - - fprintf(stderr, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); - - if (opt_log) - { - fprintf(fp_log, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); - fprintf(fp_log, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); - - fprintf(fp_log, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); - } -#endif -} - -void fprint_fasta_hdr_only(FILE * fp, const char * hdr) -{ - fprintf(fp, ">%s\n", hdr); -} - -void fprint_fasta_seq_only(FILE * fp, char * seq, unsigned long len, int width) -{ - /* - The actual length of the sequence may be longer than "len", but only - "len" characters are printed. - - Specify width of lines - zero (or <1) means linearize (all on one line). - */ - - if (width < 1) - fprintf(fp, "%.*s\n", (int)(len), seq); - else - { - long rest = len; - for(unsigned long i=0; i 0 - The random() function returns a random number in the range - 0 to 2147483647 (=2^31-1=RAND_MAX), inclusive. - We should avoid some of the upper generated numbers to - avoid modulo bias. - */ - - long random_max = RAND_MAX; - long limit = random_max - (random_max + 1) % n; - long r = random(); - while (r > limit) - r = random(); - return r % n; -} - -unsigned long random_ulong(unsigned long n) -{ - /* - Generate a random integer in the range 0 to n-1, inclusive, - n must be > 0 - */ - - unsigned long random_max = ULONG_MAX; - unsigned long limit = random_max - (random_max - n + 1) % n; - unsigned long r = ((random() << 48) ^ (random() << 32) ^ - (random() << 16) ^ (random())); - while (r > limit) - r = ((random() << 48) ^ (random() << 32) ^ - (random() << 16) ^ (random())); - return r % n; -} - -void string_normalize(char * normalized, char * s, unsigned int len) -{ - /* convert string to upper case and replace U by T */ - char * p = s; - char * q = normalized; - for(unsigned int i=0; i> 4]; - hex[2*i+1] = hexdigits[digest[i] & 15]; - } - hex[2*LEN_DIG_SHA1] = 0; -} - -void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen) -{ - /* Save hexadecimal representation of the MD5 hash of the sequence. - The string array digest must be large enough (LEN_HEX_DIG_MD5). - First normalize string by uppercasing it and replacing U's with T's. */ - - char * normalized = (char*) xmalloc(seqlen+1); - string_normalize(normalized, seq, seqlen); - - unsigned char digest[LEN_DIG_MD5]; - - MD5(normalized, (size_t) seqlen, digest); - - free(normalized); - - for(int i=0; i> 4]; - hex[2*i+1] = hexdigits[digest[i] & 15]; - } - hex[2*LEN_DIG_MD5] = 0; -} - - -void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen) -{ - char digest[LEN_HEX_DIG_SHA1]; - get_hex_seq_digest_sha1(digest, seq, seqlen); - fprintf(fp, "%s", digest); -} - -void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen) -{ - char digest[LEN_HEX_DIG_MD5]; - get_hex_seq_digest_md5(digest, seq, seqlen); - fprintf(fp, "%s", digest); -} +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +static const char * progress_prompt; +static unsigned long progress_next; +static unsigned long progress_size; +static unsigned long progress_chunk; +static const unsigned long progress_granularity = 200; + +void progress_init(const char * prompt, unsigned long size) +{ + if (! opt_quiet) + { + progress_prompt = prompt; + progress_size = size; + progress_chunk = size < progress_granularity ? + 1 : size / progress_granularity; + progress_next = 0; + fprintf(stderr, "%s %.0f%%", prompt, 0.0); + } +} + +void progress_update(unsigned long progress) +{ + if (! opt_quiet) + if (progress >= progress_next) + { + if (progress_size > 0) + fprintf(stderr, " \r%s %.0f%%", progress_prompt, + 100.0 * progress / progress_size); + else + fprintf(stderr, " \r%s ?%%", progress_prompt); + progress_next = progress + progress_chunk; + } +} + +void progress_done() +{ + if (! opt_quiet) + fprintf(stderr, " \r%s %.0f%%\n", progress_prompt, 100.0); +} + +long gcd(long a, long b) +{ + if (b == 0) + { + return a; + } + else + { + return gcd(b, a % b); + } +} + +void __attribute__((noreturn)) fatal(const char * msg) +{ + fprintf(stderr, "\n\n"); + fprintf(stderr, "Fatal error: %s\n", msg); + + if (opt_log) + { + fprintf(fp_log, "\n\n"); + fprintf(fp_log, "Fatal error: %s\n", msg); + } + + exit(EXIT_FAILURE); +} + +void __attribute__((noreturn)) fatal(const char * format, + const char * message) +{ + fprintf(stderr, "\n\n"); + fprintf(stderr, format, message); + fprintf(stderr, "\n"); + + if (opt_log) + { + fprintf(fp_log, "\n\n"); + fprintf(fp_log, format, message); + fprintf(fp_log, "\n"); + } + + exit(EXIT_FAILURE); +} + +void * xmalloc(size_t size) +{ + const size_t alignment = 16; + void * t = 0; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + if (posix_memalign(& t, alignment, size)) + fatal("Unable to allocate enough memory."); +#else + t = _aligned_malloc(size, alignment); +#endif + + if (!t) + fatal("Unable to allocate enough memory."); + return t; +} + +void * xrealloc(void *ptr, size_t size) +{ + if (size == 0) + size = 1; + void * t = realloc(ptr, size); + if (!t) + fatal("Unable to allocate enough memory."); + return t; +} + +char * xstrdup(const char *s) +{ + size_t len = strlen(s); + char * p = (char*) xmalloc(len+1); + return strcpy(p, s); +} + + +char * xstrchrnul(char *s, int c) +{ + char * r = strchr(s, c); + + if (r) + return r; + else + return (char *)s + strlen(s); +} + +unsigned long hash_cityhash64(char * s, unsigned long n) +{ + return CityHash64((const char*)s, n); +} + +long getusec(void) +{ + struct timeval tv; + +#if defined (_WIN32) + static const unsigned __int64 epoch = (uint64_t)(116444736000000000); + FILETIME file_time; + SYSTEMTIME system_time; + ULARGE_INTEGER ularge; + + GetSystemTime(&system_time); + if ((SystemTimeToFileTime(&system_time, &file_time)) == 0) { return 0; } //failed + ularge.LowPart = file_time.dwLowDateTime; + ularge.HighPart = file_time.dwHighDateTime; + + tv.tv_sec = (long) ((ularge.QuadPart - epoch) / 10000000L); + tv.tv_usec = (long) (system_time.wMilliseconds * 1000); + return tv.tv_sec; + + + +#else + if(gettimeofday(&tv,0) != 0) return 0; + return tv.tv_sec * 1000000 + tv.tv_usec; +#endif +} + +void show_rusage() +{ +#if 0 + struct rusage r_usage; + getrusage(RUSAGE_SELF, & r_usage); + + fprintf(stderr, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); + fprintf(stderr, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); + + fprintf(stderr, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); + + if (opt_log) + { + fprintf(fp_log, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); + fprintf(fp_log, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); + + fprintf(fp_log, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); + } +#endif +} + +void reverse_complement(char * rc, char * seq, long len) +{ + /* Write the reverse complementary sequence to rc. + The memory for rc must be long enough for the rc of the sequence + (identical to the length of seq + 1. */ + + for(long i=0; i 0 + The random() function returns a random number in the range + 0 to 2147483647 (=2^31-1=RAND_MAX), inclusive. + We should avoid some of the upper generated numbers to + avoid modulo bias. + */ + + long random_max = RAND_MAX; + long limit = random_max - (random_max + 1) % n; + long r = 1; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + r = random(); + while (r > limit) { r = random(); } +#else + r = rand(); + while (r > limit) { r = rand(); } +#endif + return r % n; +} + +unsigned long random_ulong(unsigned long n) +{ + /* + Generate a random integer in the range 0 to n-1, inclusive, + n must be > 0 + */ + + + unsigned long random_max = ULONG_MAX; + unsigned long limit = random_max - (random_max - n + 1) % n; + unsigned long r_long = 1; + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + + unsigned long r = ((random() << 48) ^ (random() << 32) ^ + (random() << 16) ^ (random())); + while (r > limit) + r = ((random() << 48) ^ (random() << 32) ^ + (random() << 16) ^ (random())); + + r_long = r; +#else + + long long r = ((rand() << 48) ^ (rand() << 32) ^ + (rand() << 16) ^ (rand())); + while (r > limit) + r = ((rand() << 48) ^ (rand() << 32) ^ + (rand() << 16) ^ (rand())); + + + r_long = (unsigned long) r; + +#endif + + return r_long % n; +} + +void string_normalize(char * normalized, char * s, unsigned int len) +{ + /* convert string to upper case and replace U by T */ + char * p = s; + char * q = normalized; + for(unsigned int i=0; i> 4]; + hex[2*i+1] = hexdigits[digest[i] & 15]; + } + hex[2*LEN_DIG_SHA1] = 0; +} + +void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen) +{ + /* Save hexadecimal representation of the MD5 hash of the sequence. + The string array digest must be large enough (LEN_HEX_DIG_MD5). + First normalize string by uppercasing it and replacing U's with T's. */ + + char * normalized = (char*) xmalloc(seqlen+1); + string_normalize(normalized, seq, seqlen); + + unsigned char digest[LEN_DIG_MD5]; + + MD5(normalized, (size_t) seqlen, digest); + + free(normalized); + + for(int i=0; i> 4]; + hex[2*i+1] = hexdigits[digest[i] & 15]; + } + hex[2*LEN_DIG_MD5] = 0; +} + + +void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen) +{ + char digest[LEN_HEX_DIG_SHA1]; + get_hex_seq_digest_sha1(digest, seq, seqlen); + fprintf(fp, "%s", digest); +} + +void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen) +{ + char digest[LEN_HEX_DIG_MD5]; + get_hex_seq_digest_md5(digest, seq, seqlen); + fprintf(fp, "%s", digest); +} + + diff --git a/source/vsearch_src/util.h b/source/vsearch_src/util.h old mode 100644 new mode 100755 index 1dcc1e5d..012d335e --- a/source/vsearch_src/util.h +++ b/source/vsearch_src/util.h @@ -1,5 +1,3 @@ - - /* VSEARCH: a versatile open source tool for metagenomics @@ -68,6 +66,10 @@ #define MAX(a,b) ((a) > (b) ? (a) : (b)) #endif +#ifndef exp10 +#define exp10(x) (pow(10.0,(x))) +#endif + #define MD5_DIGEST_LENGTH 16 #define SHA_DIGEST_LENGTH SHA1_DIGEST_SIZE @@ -77,7 +79,6 @@ #define LEN_HEX_DIG_MD5 (2*LEN_DIG_MD5+1) #define LEN_HEX_DIG_SHA1 (2*LEN_DIG_SHA1+1) - long gcd(long a, long b); void fatal(const char * msg); void fatal(const char * format, const char * message); @@ -88,12 +89,6 @@ char * xstrchrnul(char *s, int c); unsigned long hash_cityhash64(char * s, unsigned long n); long getusec(void); void show_rusage(); -void fprint_fasta_hdr_only(FILE * fp, const char * hdr); -void fprint_fasta_seq_only(FILE * fp, char * seq, unsigned long len, int width); -void reverse_complement(char * rc, char * seq, long len); - -void fprint_fastq(FILE * fp, char * header, char * sequence, char * quality, - bool add_ee, double ee); void progress_init(const char * prompt, unsigned long size); void progress_update(unsigned long progress); @@ -105,6 +100,8 @@ unsigned long random_ulong(unsigned long n); void string_normalize(char * normalized, char * s, unsigned int len); +void reverse_complement(char * rc, char * seq, long len); + void fprint_hex(FILE * fp, unsigned char * data, int len); void get_hex_seq_digest_sha1(char * hex, char * seq, int seqlen); @@ -112,5 +109,3 @@ void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen); void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen); void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen); - - diff --git a/source/vsearch_src/vsearch.cc b/source/vsearch_src/vsearch.cc old mode 100644 new mode 100755 index d1e3352f..d9b94265 --- a/source/vsearch_src/vsearch.cc +++ b/source/vsearch_src/vsearch.cc @@ -1,2094 +1,2482 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - - - -#include "vsearch.h" - - -/* options */ - -extern int opterr; - -bool opt_clusterout_id; -bool opt_clusterout_sort; -bool opt_eeout; -bool opt_quiet; -bool opt_relabel_md5; -bool opt_relabel_sha1; -bool opt_samheader; -bool opt_sizeorder; -bool opt_xsize; -char * opt_allpairs_global; -char * opt_alnout; -char * opt_blast6out; -char * opt_borderline; -char * opt_centroids; -char * opt_chimeras; -char * opt_cluster_fast; -char * opt_cluster_size; -char * opt_cluster_smallmem; -char * opt_clusters; -char * opt_consout; -char * opt_db; -char * opt_dbmatched; -char * opt_dbnotmatched; -char * opt_derep_fulllength; -char * opt_derep_prefix; -char * opt_fastaout; -char * opt_fastaout_discarded; -char * opt_fastapairs; -char * opt_fastq_chars; -char * opt_fastq_filter; -char * opt_fastq_stats; -char * opt_fastqout; -char * opt_fastqout_discarded; -char * opt_fastx_revcomp; -char * opt_fastx_subsample; -char * opt_label_suffix; -char * opt_log; -char * opt_maskfasta; -char * opt_matched; -char * opt_msaout; -char * opt_nonchimeras; -char * opt_notmatched; -char * opt_output; -char * opt_pattern; -char * opt_profile; -char * opt_relabel; -char * opt_samout; -char * opt_shuffle; -char * opt_sortbylength; -char * opt_sortbysize; -char * opt_uc; -char * opt_uchime_denovo; -char * opt_uchime_ref; -char * opt_uchimealns; -char * opt_uchimeout; -char * opt_usearch_global; -char * opt_userout; -double opt_abskew; -double opt_dn; -double opt_fastq_maxee; -double opt_fastq_maxee_rate; -double opt_id; -double opt_maxid; -double opt_maxqt; -double opt_maxsizeratio; -double opt_maxsl; -double opt_mid; -double opt_mindiv; -double opt_minh; -double opt_minqt; -double opt_minsizeratio; -double opt_minsl; -double opt_query_cov; -double opt_sample_pct; -double opt_target_cov; -double opt_weak_id; -double opt_xn; -int opt_acceptall; -int opt_alignwidth; -int opt_cons_truncate; -int opt_gap_extension_query_interior; -int opt_gap_extension_query_left; -int opt_gap_extension_query_right; -int opt_gap_extension_target_interior; -int opt_gap_extension_target_left; -int opt_gap_extension_target_right; -int opt_gap_open_query_interior; -int opt_gap_open_query_left; -int opt_gap_open_query_right; -int opt_gap_open_target_interior; -int opt_gap_open_target_left; -int opt_gap_open_target_right; -int opt_help; -int opt_mindiffs; -int opt_slots; -int opt_uchimeout5; -int opt_usersort; -int opt_version; -long opt_dbmask; -long opt_fasta_width; -long opt_fastq_ascii; -long opt_fastq_maxns; -long opt_fastq_minlen; -long opt_fastq_qmax; -long opt_fastq_qmaxout; -long opt_fastq_qmin; -long opt_fastq_stripleft; -long opt_fastq_tail; -long opt_fastq_trunclen; -long opt_fastq_truncqual; -long opt_fulldp; -long opt_hardmask; -long opt_iddef; -long opt_idprefix; -long opt_idsuffix; -long opt_leftjust; -long opt_match; -long opt_maxaccepts; -long opt_maxdiffs; -long opt_maxgaps; -long opt_maxhits; -long opt_maxqsize; -long opt_maxrejects; -long opt_maxseqlength; -long opt_maxsize; -long opt_maxsubs; -long opt_maxuniquesize; -long opt_mincols; -long opt_minseqlength; -long opt_minsize; -long opt_mintsize; -long opt_minuniquesize; -long opt_mismatch; -long opt_notrunclabels; -long opt_output_no_hits; -long opt_qmask; -long opt_randseed; -long opt_rightjust; -long opt_rowlen; -long opt_sample_size; -long opt_self; -long opt_selfid; -long opt_sizein; -long opt_sizeout; -long opt_strand; -long opt_threads; -long opt_top_hits_only; -long opt_topn; -long opt_uc_allhits; -long opt_wordlength; - -/* Other variables */ - -/* cpu features available */ - -long mmx_present = 0; -long sse_present = 0; -long sse2_present = 0; -long sse3_present = 0; -long ssse3_present = 0; -long sse41_present = 0; -long sse42_present = 0; -long popcnt_present = 0; -long avx_present = 0; -long avx2_present = 0; - -static char * progname; -static char progheader[80]; -static char * cmdline; -static time_t time_start; -static time_t time_finish; - -FILE * fp_log = 0; - -#define cpuid(f1, f2, a, b, c, d) \ - __asm__ __volatile__ ("cpuid" \ - : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ - : "a" (f1), "c" (f2)); - -void cpu_features_detect() -{ - unsigned int a, b, c, d; - - cpuid(0, 0, a, b, c, d); - unsigned int maxlevel = a & 0xff; - - if (maxlevel >= 1) - { - cpuid(1, 0, a, b, c, d); - mmx_present = (d >> 23) & 1; - sse_present = (d >> 25) & 1; - sse2_present = (d >> 26) & 1; - sse3_present = (c >> 0) & 1; - ssse3_present = (c >> 9) & 1; - sse41_present = (c >> 19) & 1; - sse42_present = (c >> 20) & 1; - popcnt_present = (c >> 23) & 1; - avx_present = (c >> 28) & 1; - - if (maxlevel >= 7) - { - cpuid(7, 0, a, b, c, d); - avx2_present = (b >> 5) & 1; - } - } -} - -void cpu_features_show() -{ - fprintf(stderr, "CPU features:"); - if (mmx_present) - fprintf(stderr, " mmx"); - if (sse_present) - fprintf(stderr, " sse"); - if (sse2_present) - fprintf(stderr, " sse2"); - if (sse3_present) - fprintf(stderr, " sse3"); - if (ssse3_present) - fprintf(stderr, " ssse3"); - if (sse41_present) - fprintf(stderr, " sse4.1"); - if (sse42_present) - fprintf(stderr, " sse4.2"); - if (popcnt_present) - fprintf(stderr, " popcnt"); - if (avx_present) - fprintf(stderr, " avx"); - if (avx2_present) - fprintf(stderr, " avx2"); - fprintf(stderr, "\n"); -} - - -void args_get_gap_penalty_string(char * arg, int is_open) -{ - /* See http://www.drive5.com/usearch/manual/aln_params.html - - --gapopen *E/10I/1E/2L/3RQ/4RT/1IQ - --gapext *E/10I/1E/2L/3RQ/4RT/1IQ - - integer or * - followed by I, E, L, R, Q or T characters - separated by / - * means infinitely high (disallow) - E=end - I=interior - L=left - R=right - Q=query - T=target - - E cannot be combined with L or R - - We do not support floating point values. Therefore, - all default score and penalties are multiplied by 2. - - */ - - char *p = arg; - - while (*p) - { - int skip = 0; - int pen = 0; - - if (sscanf(p, "%d%n", &pen, &skip) == 1) - { - p += skip; - } - else if (*p == '*') - { - pen = 10000; - p++; - } - else - fatal("Invalid gap penalty argument (%s)", p); - - char * q = p; - - int set_E = 0; - int set_I = 0; - int set_L = 0; - int set_R = 0; - int set_Q = 0; - int set_T = 0; - - while((*p) && (*p != '/')) - { - switch(*p) - { - case 'E': - set_E = 1; - break; - case 'I': - set_I = 1; - break; - case 'L': - set_L = 1; - break; - case 'R': - set_R = 1; - break; - case 'Q': - set_Q = 1; - break; - case 'T': - set_T = 1; - break; - default: - fatal("Invalid char '%.1s' in gap penalty string", p); - break; - } - p++; - } - - if (*p == '/') - p++; - - if (set_E && (set_L || set_R)) - fatal("Invalid gap penalty string (E and L or R) '%s'", q); - - if (set_E) - { - set_L = 1; - set_R = 1; - } - - /* if neither L, I, R nor E is specified, it applies to all */ - - if ((!set_L) && (!set_I) && (!set_R)) - { - set_L = 1; - set_I = 1; - set_R = 1; - } - - /* if neither Q nor T is specified, it applies to both */ - - if ((!set_Q) && (!set_T)) - { - set_Q = 1; - set_T = 1; - } - - if (is_open) - { - if (set_Q) - { - if (set_L) - opt_gap_open_query_left = pen; - if (set_I) - opt_gap_open_query_interior = pen; - if (set_R) - opt_gap_open_query_right = pen; - } - if (set_T) - { - if (set_L) - opt_gap_open_target_left = pen; - if (set_I) - opt_gap_open_target_interior = pen; - if (set_R) - opt_gap_open_target_right = pen; - } - } - else - { - if (set_Q) - { - if (set_L) - opt_gap_extension_query_left = pen; - if (set_I) - opt_gap_extension_query_interior = pen; - if (set_R) - opt_gap_extension_query_right = pen; - } - if (set_T) - { - if (set_L) - opt_gap_extension_target_left = pen; - if (set_I) - opt_gap_extension_target_interior = pen; - if (set_R) - opt_gap_extension_target_right = pen; - } - } - } -} - - -long args_getlong(char * arg) -{ - int len = 0; - long temp = 0; - int ret = sscanf(arg, "%ld%n", &temp, &len); - if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) - fatal("Illegal option argument"); - return temp; -} - -double args_getdouble(char * arg) -{ - int len = 0; - double temp = 0; - int ret = sscanf(arg, "%lf%n", &temp, &len); - if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) - fatal("Illegal option argument"); - return temp; -} - -void args_init(int argc, char *argv[]) -{ - /* Set defaults */ - progname = argv[0]; - - opt_abskew = 2.0; - opt_acceptall = 0; - opt_alignwidth = 80; - opt_allpairs_global = 0; - opt_alnout = 0; - opt_borderline = 0; - opt_centroids = 0; - opt_chimeras = 0; - opt_cluster_fast = 0; - opt_cluster_size = 0; - opt_cluster_smallmem = 0; - opt_clusterout_id = 0; - opt_clusterout_sort = 0; - opt_clusters = 0; - opt_cons_truncate = 0; - opt_consout = 0; - opt_db = 0; - opt_dbmask = MASK_DUST; - opt_dbmatched = 0; - opt_dbnotmatched = 0; - opt_derep_fulllength = 0; - opt_derep_prefix = 0; - opt_dn = 1.4; - opt_eeout = 0; - opt_fasta_width = 80; - opt_fastaout = 0; - opt_fastaout_discarded = 0; - opt_fastapairs = 0; - opt_fastq_ascii = 33; - opt_fastq_chars = 0; - opt_fastq_maxee = DBL_MAX; - opt_fastq_maxee_rate = DBL_MAX; - opt_fastq_maxns = LONG_MAX; - opt_fastq_minlen = 1; - opt_fastq_qmax = 41; - opt_fastq_qmaxout = 41; - opt_fastq_qmin = 0; - opt_fastq_stats = 0; - opt_fastq_stripleft = 0; - opt_fastq_tail = 4; - opt_fastq_trunclen = 0; - opt_fastq_truncqual = LONG_MIN; - opt_fastqout = 0; - opt_fastqout_discarded = 0; - opt_fastx_revcomp = 0; - opt_fastx_subsample = 0; - opt_fulldp = 0; - opt_gap_extension_query_interior=2; - opt_gap_extension_query_left=1; - opt_gap_extension_query_right=1; - opt_gap_extension_target_interior=2; - opt_gap_extension_target_left=1; - opt_gap_extension_target_right=1; - opt_gap_open_query_interior=20; - opt_gap_open_query_left=2; - opt_gap_open_query_right=2; - opt_gap_open_target_interior=20; - opt_gap_open_target_left=2; - opt_gap_open_target_right=2; - opt_hardmask = 0; - opt_help = 0; - opt_id = -1.0; - opt_iddef = 2; - opt_idprefix = 0; - opt_idsuffix = 0; - opt_label_suffix = 0; - opt_leftjust = 0; - opt_log = 0; - opt_match = 2; - opt_matched = 0; - opt_maxaccepts = 1; - opt_maxdiffs = INT_MAX; - opt_maxgaps = INT_MAX; - opt_maxhits = LONG_MAX; - opt_maxid = 1.0; - opt_maxqsize = INT_MAX; - opt_maxqt = DBL_MAX; - opt_maxrejects = -1; - opt_maxseqlength = 50000; - opt_maxsize = LONG_MAX; - opt_maxsizeratio = DBL_MAX; - opt_maxsl = DBL_MAX; - opt_maxsubs = INT_MAX; - opt_maxuniquesize = LONG_MAX; - opt_mid = 0.0; - opt_mincols = 0; - opt_mindiffs = 3; - opt_mindiv = 0.8; - opt_minh = 0.28; - opt_minqt = 0.0; - opt_minseqlength = 0; - opt_minsize = 0; - opt_minsizeratio = 0.0; - opt_minsl = 0.0; - opt_mintsize = 0; - opt_minuniquesize = 0; - opt_mismatch = -4; - opt_msaout = 0; - opt_nonchimeras = 0; - opt_notmatched = 0; - opt_notrunclabels = 0; - opt_output = 0; - opt_output_no_hits = 0; - opt_pattern = 0; - opt_profile = 0; - opt_qmask = MASK_DUST; - opt_query_cov = 0.0; - opt_quiet = false; - opt_randseed = 0; - opt_relabel = 0; - opt_relabel_md5 = 0; - opt_relabel_sha1 = 0; - opt_rightjust = 0; - opt_rowlen = 64; - opt_samheader = 0; - opt_samout = 0; - opt_sample_pct = 0; - opt_sample_size = 0; - opt_self = 0; - opt_selfid = 0; - opt_shuffle = 0; - opt_sizein = 0; - opt_sizeorder = 0; - opt_sizeout = 0; - opt_slots = 0; - opt_sortbylength = 0; - opt_sortbysize = 0; - opt_strand = 1; - opt_target_cov = 0.0; - opt_threads = 0; - opt_top_hits_only = 0; - opt_topn = LONG_MAX; - opt_uc_allhits = 0; - opt_uchime_denovo = 0; - opt_uchime_ref = 0; - opt_uchimealns = 0; - opt_uchimeout = 0; - opt_uchimeout5 = 0; - opt_usearch_global = 0; - opt_userout = 0; - opt_usersort = 0; - opt_version = 0; - opt_weak_id = 10.0; - opt_wordlength = 8; - opt_xn = 8.0; - opt_xsize = 0; - - opterr = 1; - - //changed to NULL to use getopt_long.h class - this avoids pulling mothur's - struct option long_options[] = - - { - {"help", no_argument, NULL, 0 }, - {"version", no_argument, NULL, 0 }, - {"alnout", required_argument, NULL, 0 }, - {"usearch_global", required_argument, NULL, 0 }, - {"db", required_argument, NULL, 0 }, - {"id", required_argument, NULL, 0 }, - {"maxaccepts", required_argument, NULL, 0 }, - {"maxrejects", required_argument, NULL, 0 }, - {"wordlength", required_argument, NULL, 0 }, - {"match", required_argument, NULL, 0 }, - {"mismatch", required_argument, NULL, 0 }, - {"fulldp", no_argument, NULL, 0 }, - {"strand", required_argument, NULL, 0 }, - {"threads", required_argument, NULL, 0 }, - {"gapopen", required_argument, NULL, 0 }, - {"gapext", required_argument, NULL, 0 }, - {"rowlen", required_argument, NULL, 0 }, - {"userfields", required_argument, NULL, 0 }, - {"userout", required_argument, NULL, 0 }, - {"self", no_argument, NULL, 0 }, - {"blast6out", required_argument, NULL, 0 }, - {"uc", required_argument, NULL, 0 }, - {"weak_id", required_argument, NULL, 0 }, - {"uc_allhits", no_argument, NULL, 0 }, - {"notrunclabels", no_argument, NULL, 0 }, - {"sortbysize", required_argument, NULL, 0 }, - {"output", required_argument, NULL, 0 }, - {"minsize", required_argument, NULL, 0 }, - {"maxsize", required_argument, NULL, 0 }, - {"relabel", required_argument, NULL, 0 }, - {"sizeout", no_argument, NULL, 0 }, - {"derep_fulllength", required_argument, NULL, 0 }, - {"minseqlength", required_argument, NULL, 0 }, - {"minuniquesize", required_argument, NULL, 0 }, - {"topn", required_argument, NULL, 0 }, - {"maxseqlength", required_argument, NULL, 0 }, - {"sizein", no_argument, NULL, 0 }, - {"sortbylength", required_argument, NULL, 0 }, - {"matched", required_argument, NULL, 0 }, - {"notmatched", required_argument, NULL, 0 }, - {"dbmatched", required_argument, NULL, 0 }, - {"dbnotmatched", required_argument, NULL, 0 }, - {"fastapairs", required_argument, NULL, 0 }, - {"output_no_hits", no_argument, NULL, 0 }, - {"maxhits", required_argument, NULL, 0 }, - {"top_hits_only", no_argument, NULL, 0 }, - {"fasta_width", required_argument, NULL, 0 }, - {"query_cov", required_argument, NULL, 0 }, - {"target_cov", required_argument, NULL, 0 }, - {"idprefix", required_argument, NULL, 0 }, - {"idsuffix", required_argument, NULL, 0 }, - {"minqt", required_argument, NULL, 0 }, - {"maxqt", required_argument, NULL, 0 }, - {"minsl", required_argument, NULL, 0 }, - {"maxsl", required_argument, NULL, 0 }, - {"leftjust", no_argument, NULL, 0 }, - {"rightjust", no_argument, NULL, 0 }, - {"selfid", no_argument, NULL, 0 }, - {"maxid", required_argument, NULL, 0 }, - {"minsizeratio", required_argument, NULL, 0 }, - {"maxsizeratio", required_argument, NULL, 0 }, - {"maxdiffs", required_argument, NULL, 0 }, - {"maxsubs", required_argument, NULL, 0 }, - {"maxgaps", required_argument, NULL, 0 }, - {"mincols", required_argument, NULL, 0 }, - {"maxqsize", required_argument, NULL, 0 }, - {"mintsize", required_argument, NULL, 0 }, - {"mid", required_argument, NULL, 0 }, - {"shuffle", required_argument, NULL, 0 }, - {"randseed", required_argument, NULL, 0 }, - {"maskfasta", required_argument, NULL, 0 }, - {"hardmask", no_argument, NULL, 0 }, - {"qmask", required_argument, NULL, 0 }, - {"dbmask", required_argument, NULL, 0 }, - {"cluster_smallmem", required_argument, NULL, 0 }, - {"cluster_fast", required_argument, NULL, 0 }, - {"centroids", required_argument, NULL, 0 }, - {"clusters", required_argument, NULL, 0 }, - {"consout", required_argument, NULL, 0 }, - {"cons_truncate", no_argument, NULL, 0 }, - {"msaout", required_argument, NULL, 0 }, - {"usersort", no_argument, NULL, 0 }, - {"xn", required_argument, NULL, 0 }, - {"iddef", required_argument, NULL, 0 }, - {"slots", required_argument, NULL, 0 }, - {"pattern", required_argument, NULL, 0 }, - {"maxuniquesize", required_argument, NULL, 0 }, - {"abskew", required_argument, NULL, 0 }, - {"chimeras", required_argument, NULL, 0 }, - {"dn", required_argument, NULL, 0 }, - {"mindiffs", required_argument, NULL, 0 }, - {"mindiv", required_argument, NULL, 0 }, - {"minh", required_argument, NULL, 0 }, - {"nonchimeras", required_argument, NULL, 0 }, - {"uchime_denovo", required_argument, NULL, 0 }, - {"uchime_ref", required_argument, NULL, 0 }, - {"uchimealns", required_argument, NULL, 0 }, - {"uchimeout", required_argument, NULL, 0 }, - {"uchimeout5", no_argument, NULL, 0 }, - {"alignwidth", required_argument, NULL, 0 }, - {"allpairs_global", required_argument, NULL, 0 }, - {"acceptall", no_argument, NULL, 0 }, - {"cluster_size", required_argument, NULL, 0 }, - {"samout", required_argument, NULL, 0 }, - {"log", required_argument, NULL, 0 }, - {"quiet", no_argument, NULL, 0 }, - {"fastx_subsample", required_argument, NULL, 0 }, - {"sample_pct", required_argument, NULL, 0 }, - {"fastq_chars", required_argument, NULL, 0 }, - {"profile", required_argument, NULL, 0 }, - {"sample_size", required_argument, NULL, 0 }, - {"fastaout", required_argument, NULL, 0 }, - {"xsize", no_argument, NULL, 0 }, - {"clusterout_id", no_argument, NULL, 0 }, - {"clusterout_sort", no_argument, NULL, 0 }, - {"borderline", required_argument, NULL, 0 }, - {"relabel_sha1", no_argument, NULL, 0 }, - {"relabel_md5", no_argument, NULL, 0 }, - {"derep_prefix", required_argument, NULL, 0 }, - {"fastq_filter", required_argument, NULL, 0 }, - {"fastqout", required_argument, NULL, 0 }, - {"fastaout_discarded", required_argument, NULL, 0 }, - {"fastqout_discarded", required_argument, NULL, 0 }, - {"fastq_truncqual", required_argument, NULL, 0 }, - {"fastq_maxee", required_argument, NULL, 0 }, - {"fastq_trunclen", required_argument, NULL, 0 }, - {"fastq_minlen", required_argument, NULL, 0 }, - {"fastq_stripleft", required_argument, NULL, 0 }, - {"fastq_maxee_rate", required_argument, NULL, 0 }, - {"fastq_maxns", required_argument, NULL, 0 }, - {"eeout", no_argument, NULL, 0 }, - {"fastq_ascii", required_argument, NULL, 0 }, - {"fastq_qmin", required_argument, NULL, 0 }, - {"fastq_qmax", required_argument, NULL, 0 }, - {"fastq_qmaxout", required_argument, NULL, 0 }, - {"fastq_stats", required_argument, NULL, 0 }, - {"fastq_tail", required_argument, NULL, 0 }, - {"fastx_revcomp", required_argument, NULL, 0 }, - {"label_suffix", required_argument, NULL, 0 }, - {"h", no_argument, NULL, 0 }, - {"samheader", no_argument, NULL, 0 }, - {"sizeorder", no_argument, NULL, 0 }, - { 0, 0, 0, 0 } - }; - - int option_count = sizeof(long_options) / sizeof(struct option); - bool options_selected[option_count]; - - memset(options_selected, 0, sizeof(options_selected)); - - int option_index = 0; - int c; - - while ((c = getopt_long(argc, argv, "", long_options, - &option_index)) == 0) - { - - if (option_index < option_count) - options_selected[option_index] = 1; - - switch(option_index) - { - - case 0: - opt_help = 1; - break; - case 1: - opt_version = 1; - break; - - case 2: - opt_alnout = optarg; - break; - - case 3: - opt_usearch_global = optarg; - break; - - case 4: - opt_db = optarg; - break; - - case 5: - opt_id = args_getdouble(optarg); - break; - - case 6: - opt_maxaccepts = args_getlong(optarg); - break; - - case 7: - opt_maxrejects = args_getlong(optarg); - break; - - case 8: - opt_wordlength = args_getlong(optarg); - break; - - case 9: - opt_match = args_getlong(optarg); - break; - - case 10: - opt_mismatch = args_getlong(optarg); - break; - - case 11: - opt_fulldp = 1; - break; - - case 12: - if (strcasecmp(optarg, "plus") == 0) - opt_strand = 1; - else if (strcasecmp(optarg, "both") == 0) - opt_strand = 2; - else - opt_strand = 0; - break; - - case 13: - opt_threads = args_getlong(optarg); - break; - - case 14: - args_get_gap_penalty_string(optarg, 1); - break; - - case 15: - args_get_gap_penalty_string(optarg, 0); - break; - - case 16: - opt_rowlen = args_getlong(optarg); - break; - - case 17: - if (!parse_userfields_arg(optarg)) - fatal("Unrecognized userfield argument"); - break; - - case 18: - opt_userout = optarg; - break; - - case 19: - opt_self = 1; - break; - - case 20: - opt_blast6out = optarg; - break; - - case 21: - opt_uc = optarg; - break; - - case 22: - opt_weak_id = args_getdouble(optarg); - break; - - case 23: - opt_uc_allhits = 1; - break; - - case 24: - opt_notrunclabels = 1; - break; - - case 25: - opt_sortbysize = optarg; - break; - - case 26: - opt_output = optarg; - break; - - case 27: - opt_minsize = args_getlong(optarg); - break; - - case 28: - opt_maxsize = args_getlong(optarg); - break; - - case 29: - opt_relabel = optarg; - break; - - case 30: - opt_sizeout = 1; - break; - - case 31: - opt_derep_fulllength = optarg; - break; - - case 32: - opt_minseqlength = args_getlong(optarg); - break; - - case 33: - opt_minuniquesize = args_getlong(optarg); - break; - - case 34: - opt_topn = args_getlong(optarg); - break; - - case 35: - opt_maxseqlength = args_getlong(optarg); - break; - - case 36: - opt_sizein = 1; - break; - - case 37: - opt_sortbylength = optarg; - break; - - case 38: - opt_matched = optarg; - break; - - case 39: - opt_notmatched = optarg; - break; - - case 40: - opt_dbmatched = optarg; - break; - - case 41: - opt_dbnotmatched = optarg; - break; - - case 42: - opt_fastapairs = optarg; - break; - - case 43: - opt_output_no_hits = 1; - break; - - case 44: - opt_maxhits = args_getlong(optarg); - break; - - case 45: - opt_top_hits_only = 1; - break; - - case 46: - opt_fasta_width = args_getlong(optarg); - break; - - case 47: - opt_query_cov = args_getdouble(optarg); - break; - - case 48: - opt_target_cov = args_getdouble(optarg); - break; - - case 49: - opt_idprefix = args_getlong(optarg); - break; - - case 50: - opt_idsuffix = args_getlong(optarg); - break; - - case 51: - opt_minqt = args_getdouble(optarg); - break; - - case 52: - opt_maxqt = args_getdouble(optarg); - break; - - case 53: - opt_minsl = args_getdouble(optarg); - break; - - case 54: - opt_maxsl = args_getdouble(optarg); - break; - - case 55: - opt_leftjust = 1; - break; - - case 56: - opt_rightjust = 1; - break; - - case 57: - opt_selfid = 1; - break; - - case 58: - opt_maxid = args_getdouble(optarg); - break; - - case 59: - opt_minsizeratio = args_getdouble(optarg); - break; - - case 60: - opt_maxsizeratio = args_getdouble(optarg); - break; - - case 61: - opt_maxdiffs = args_getlong(optarg); - break; - - case 62: - opt_maxsubs = args_getlong(optarg); - break; - - case 63: - opt_maxgaps = args_getlong(optarg); - break; - - case 64: - opt_mincols = args_getlong(optarg); - break; - - case 65: - opt_maxqsize = args_getlong(optarg); - break; - - case 66: - opt_mintsize = args_getlong(optarg); - break; - - case 67: - opt_mid = args_getdouble(optarg); - break; - - case 68: - opt_shuffle = optarg; - break; - - case 69: - opt_randseed = args_getlong(optarg); - break; - - case 70: - opt_maskfasta = optarg; - break; - - case 71: - opt_hardmask = 1; - break; - - case 72: - if (strcasecmp(optarg, "none") == 0) - opt_qmask = MASK_NONE; - else if (strcasecmp(optarg, "dust") == 0) - opt_qmask = MASK_DUST; - else if (strcasecmp(optarg, "soft") == 0) - opt_qmask = MASK_SOFT; - else - opt_qmask = MASK_ERROR; - break; - - case 73: - if (strcasecmp(optarg, "none") == 0) - opt_dbmask = MASK_NONE; - else if (strcasecmp(optarg, "dust") == 0) - opt_dbmask = MASK_DUST; - else if (strcasecmp(optarg, "soft") == 0) - opt_dbmask = MASK_SOFT; - else - opt_dbmask = MASK_ERROR; - break; - - case 74: - opt_cluster_smallmem = optarg; - break; - - case 75: - opt_cluster_fast = optarg; - break; - - case 76: - opt_centroids = optarg; - break; - - case 77: - opt_clusters = optarg; - break; - - case 78: - opt_consout = optarg; - break; - - case 79: - fprintf(stderr, "WARNING: Option --cons_truncate is ignored\n"); - opt_cons_truncate = 1; - break; - - case 80: - opt_msaout = optarg; - break; - - case 81: - opt_usersort = 1; - break; - - case 82: - opt_xn = args_getdouble(optarg); - break; - - case 83: - opt_iddef = args_getlong(optarg); - break; - - case 84: - fprintf(stderr, "WARNING: Option --slots is ignored\n"); - opt_slots = args_getlong(optarg); - break; - - case 85: - fprintf(stderr, "WARNING: Option --pattern is ignored\n"); - opt_pattern = optarg; - break; - - case 86: - opt_maxuniquesize = args_getlong(optarg); - break; - - case 87: - opt_abskew = args_getdouble(optarg); - break; - - case 88: - opt_chimeras = optarg; - break; - - case 89: - opt_dn = args_getdouble(optarg); - break; - - case 90: - opt_mindiffs = args_getlong(optarg); - break; - - case 91: - opt_mindiv = args_getdouble(optarg); - break; - - case 92: - opt_minh = args_getdouble(optarg); - break; - - case 93: - opt_nonchimeras = optarg; - break; - - case 94: - opt_uchime_denovo = optarg; - break; - - case 95: - opt_uchime_ref = optarg; - break; - - case 96: - opt_uchimealns = optarg; - break; - - case 97: - opt_uchimeout = optarg; - break; - - case 98: - opt_uchimeout5 = 1; - break; - - case 99: - opt_alignwidth = args_getlong(optarg); - break; - - case 100: - opt_allpairs_global = optarg; - break; - - case 101: - opt_acceptall = 1; - break; - - case 102: - opt_cluster_size = optarg; - break; - - case 103: - opt_samout = optarg; - break; - - case 104: - opt_log = optarg; - break; - - case 105: - opt_quiet = true; - break; - - case 106: - opt_fastx_subsample = optarg; - break; - - case 107: - opt_sample_pct = args_getdouble(optarg); - break; - - case 108: - opt_fastq_chars = optarg; - break; - - case 109: - opt_profile = optarg; - break; - - case 110: - opt_sample_size = args_getlong(optarg); - break; - - case 111: - opt_fastaout = optarg; - break; - - case 112: - opt_xsize = 1; - break; - - case 113: - opt_clusterout_id = 1; - break; - - case 114: - opt_clusterout_sort = 1; - break; - - case 115: - opt_borderline = optarg; - break; - - case 116: - opt_relabel_sha1 = 1; - break; - - case 117: - opt_relabel_md5 = 1; - break; - - case 118: - opt_derep_prefix = optarg; - break; - - case 119: - opt_fastq_filter = optarg; - break; - - case 120: - opt_fastqout = optarg; - break; - - case 121: - opt_fastaout_discarded = optarg; - break; - - case 122: - opt_fastqout_discarded = optarg; - break; - - case 123: - opt_fastq_truncqual = args_getlong(optarg); - break; - - case 124: - opt_fastq_maxee = args_getdouble(optarg); - break; - - case 125: - opt_fastq_trunclen = args_getlong(optarg); - break; - - case 126: - opt_fastq_minlen = args_getlong(optarg); - break; - - case 127: - opt_fastq_stripleft = args_getlong(optarg); - break; - - case 128: - opt_fastq_maxee_rate = args_getdouble(optarg); - break; - - case 129: - opt_fastq_maxns = args_getlong(optarg); - break; - - case 130: - opt_eeout = 1; - break; - - case 131: - opt_fastq_ascii = args_getlong(optarg); - break; - - case 132: - opt_fastq_qmin = args_getlong(optarg); - break; - - case 133: - opt_fastq_qmax = args_getlong(optarg); - break; - - case 134: - opt_fastq_qmaxout = args_getlong(optarg); - break; - - case 135: - opt_fastq_stats = optarg; - break; - - case 136: - opt_fastq_tail = args_getlong(optarg); - break; - - case 137: - opt_fastx_revcomp = optarg; - break; - - case 138: - opt_label_suffix = optarg; - break; - - case 139: - opt_help = 1; - break; - - case 140: - opt_samheader = 1; - break; - - case 141: - opt_sizeorder = 1; - break; - - default: - fatal("Internal error in option parsing"); - } - } - - /* Terminate if ambiguous or illegal options have been detected */ - if (c != -1) - exit(EXIT_FAILURE); - - /* Terminate after reporting any extra non-option arguments */ - if (optind < argc) - fatal("Unrecognized string on command line (%s)", argv[optind]); - - int commands = 0; - - if (opt_fastq_chars) - commands++; - if (opt_fastq_filter) - commands++; - if (opt_fastq_stats) - commands++; - if (opt_usearch_global) - commands++; - if (opt_sortbysize) - commands++; - if (opt_sortbylength) - commands++; - if (opt_derep_fulllength) - commands++; - if (opt_derep_prefix) - commands++; - if (opt_help) - commands++; - if (opt_version) - commands++; - if (opt_shuffle) - commands++; - if (opt_fastx_subsample) - commands++; - if (opt_maskfasta) - commands++; - if (opt_cluster_smallmem) - commands++; - if (opt_cluster_fast) - commands++; - if (opt_cluster_size) - commands++; - if (opt_uchime_denovo) - commands++; - if (opt_uchime_ref) - commands++; - if (opt_allpairs_global) - commands++; - if (opt_fastx_revcomp) - commands++; - - if (commands > 1) - fatal("More than one command specified"); - - if (opt_weak_id > opt_id) - opt_weak_id = opt_id; - - if (opt_maxrejects == -1) - { - if (opt_cluster_fast) - opt_maxrejects = 8; - else - opt_maxrejects = 32; - } - - if (opt_minseqlength < 0) - fatal("The argument to --minseqlength must be positive"); - - if (opt_maxaccepts < 0) - fatal("The argument to --maxaccepts must not be negative"); - - if (opt_maxrejects < 0) - fatal("The argument to --maxrejects must not be negative"); - - if ((opt_threads < 0) || (opt_threads > 1024)) - fatal("The argument to --threads must be in the range 0 (default) to 1024"); - - if ((opt_wordlength < 3) || (opt_wordlength > 15)) - fatal("The argument to --wordlength must be in the range 3 to 15"); - - if ((opt_iddef < 0) || (opt_iddef > 4)) - fatal("The argument to --iddef must in the range 0 to 4"); - - if (opt_match <= 0) - fatal("The argument to --match must be positive"); - - if (opt_mismatch >= 0) - fatal("The argument to --mismatch must be negative"); - - if (opt_alignwidth < 0) - fatal("The argument to --alignwidth must not be negative"); - - if (opt_rowlen < 0) - fatal("The argument to --rowlen must not be negative"); - - if (opt_strand < 1) - fatal("The argument to --strand must be plus or both"); - - if (opt_qmask == MASK_ERROR) - fatal("The argument to --qmask must be none, dust or soft"); - - if (opt_dbmask == MASK_ERROR) - fatal("The argument to --dbmask must be none, dust or soft"); - - if ((opt_sample_pct < 0.0) || (opt_sample_pct > 100.0)) - fatal("The argument to --sample_pct must be in the range 0.0 to 100.0"); - - if (opt_sample_size < 0) - fatal("The argument to --sample_size must not be negative"); - - if (opt_relabel_sha1 && opt_relabel_md5) - fatal("Specify either --relabel_sha1 or --relabel_md5, not both"); - - if (opt_fastq_tail < 1) - fatal("The argument to --fastq_tail must be positive"); - - - /* TODO: check valid range of gap penalties */ - - /* adapt/adjust parameters */ - -#if 1 - - /* - Adjust gap open penalty according to convention. - - The specified gap open penalties include the penalty for - a single nucleotide gap: - - gap penalty = gap open penalty + (gap length - 1) * gap extension penalty - - The rest of the code assumes the first nucleotide gap penalty is not - included in the gap opening penalty. - */ - - opt_gap_open_query_left -= opt_gap_extension_query_left; - opt_gap_open_target_left -= opt_gap_extension_target_left; - opt_gap_open_query_interior -= opt_gap_extension_query_interior; - opt_gap_open_target_interior -= opt_gap_extension_target_interior; - opt_gap_open_query_right -= opt_gap_extension_query_right; - opt_gap_open_target_right -= opt_gap_extension_target_right; - -#endif - - if (opt_threads == 0) - opt_threads = sysconf(_SC_NPROCESSORS_ONLN); - - /* set default opt_minseqlength depending on command */ - - if (opt_minseqlength == 0) - { - if (opt_cluster_smallmem || opt_cluster_fast || opt_cluster_size || - opt_usearch_global || opt_derep_fulllength || opt_derep_prefix ) - opt_minseqlength = 32; - else - opt_minseqlength = 1; - } -} - - -void cmd_help() -{ - /* 0 1 2 3 4 5 6 7 */ - /* 01234567890123456789012345678901234567890123456789012345678901234567890123456789 */ - - if (! opt_quiet) - { - fprintf(stdout, - "Usage: %s [OPTIONS]\n", progname); - - fprintf(stdout, - "\n" - "General options\n" - " --fasta_width INT width of FASTA seq lines, 0 for no wrap (80)\n" - " --help | --h display help information\n" - " --log FILENAME write messages, timing and memory info to file\n" - " --maxseqlength INT maximum sequence length (50000)\n" - " --minseqlength INT min seq length (clust/derep/search: 32, other:1)\n" - " --notrunclabels do not truncate labels at first space\n" - " --quiet output just warnings and fatal errors to stderr\n" - " --threads INT number of threads to use, zero for all cores (0)\n" - " --version display version information\n" - "\n" - "Chimera detection\n" - " --uchime_denovo FILENAME detect chimeras de novo\n" - " --uchime_ref FILENAME detect chimeras using a reference database\n" - "Options\n" - " --abskew REAL min abundance ratio of parent vs chimera (2.0)\n" - " --alignwidth INT width of alignment in uchimealn output (80)\n" - " --borderline FILENAME output borderline chimeric sequences to file\n" - " --chimeras FILENAME output chimeric sequences to file\n" - " --db FILENAME reference database for --uchime_ref\n" - " --dn REAL 'no' vote pseudo-count (1.4)\n" - " --mindiffs INT minimum number of differences in segment (3)\n" - " --mindiv REAL minimum divergence from closest parent (0.8)\n" - " --minh REAL minimum score (0.28)\n" - " --nonchimeras FILENAME output non-chimeric sequences to file\n" - " --relabel STRING relabel nonchimeras with this prefix string\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --self exclude identical labels for --uchime_ref\n" - " --selfid exclude identical sequences for --uchime_ref\n" - " --sizeout include abundance information when relabelling\n" - " --uchimealns FILENAME output chimera alignments to file\n" - " --uchimeout FILENAME output to chimera info to tab-separated file\n" - " --uchimeout5 make output compatible with uchime version 5\n" - " --xn REAL 'no' vote weight (8.0)\n" - "\n" - "Clustering\n" - " --cluster_fast FILENAME cluster sequences after sorting by length\n" - " --cluster_size FILENAME cluster sequences after sorting by abundance\n" - " --cluster_smallmem FILENAME cluster already sorted sequences (see -usersort)\n" - "Options (most searching options also apply)\n" - " --centroids FILENAME output centroid sequences to FASTA file\n" - " --clusterout_id add cluster id info to consout and profile files\n" - " --clusterout_sort order msaout, consout, profile by decr abundance\n" - " --clusters STRING output each cluster to a separate FASTA file\n" - " --consout FILENAME output cluster consensus sequences to FASTA file\n" - " --cons_truncate do not ignore terminal gaps in MSA for consensus\n" - " --id REAL reject if identity lower\n" - " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" - " --msaout FILENAME output multiple seq. alignments to FASTA file\n" - " --profile FILENAME output sequence profile of each cluster to file\n" - " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" - " --relabel STRING relabel centroids with this prefix string\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sizein propagate abundance annotation from input\n" - " --sizeorder Sort accepted centroids by abundance (AGC)\n" - " --sizeout write cluster abundances to centroid file\n" - " --strand plus|both cluster using plus or both strands (plus)\n" - " --uc FILENAME filename for UCLUST-like output\n" - " --usersort indicate sequences not presorted by length\n" - "\n" - "Dereplication\n" - " --derep_fulllength FILENAME dereplicate sequences in the given FASTA file\n" - " --derep_prefix FILENAME dereplicate sequences in file based on prefixes\n" - "Options\n" - " --maxuniquesize INT maximum abundance for output from dereplication\n" - " --minuniquesize INT minimum abundance for output from dereplication\n" - " --output FILENAME output FASTA file\n" - " --relabel STRING relabel with this prefix string after derep.\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sizein propagate abundance annotation from input\n" - " --sizeout write abundance annotation to output\n" - " --strand plus|both dereplicate plus or both strands (plus)\n" - " --topn INT output just the n most abundant sequences\n" - " --uc FILENAME filename for UCLUST-like output\n" - "\n" - "FASTA/FASTQ file processing\n" - " --fastq_chars FILENAME Analyse FASTQ file for version and quality range\n" - " --fastq_filter FILENAME Filter FASTQ file, output to FASTQ or FASTA file\n" - " --fastq_stats FILENAME Report FASTQ file statistics\n" - " --fastx_revcomp FILENAME Reverse-complement seqs in FASTA or FASTQ file\n" - "Options\n" - " --eeout Include expected errors in FASTQ filter output\n" - " --fastaout FILENAME FASTA filename for passed seqs from FASTQ filter\n" - " --fastaout_discarded FNAME FASTA filename for discarded by FASTQ filter\n" - " --fastq_ascii INT ASCII char no for FASTQ quality base value (33)\n" - " --fastq_maxee REAL Maximum expected error value for FASTQ filter\n" - " --fastq_maxee_rate REAL Maximum expected error rate for FASTQ filter\n" - " --fastq_maxns INT Maximum number of N's for FASTQ filter\n" - " --fastq_minlen INT Minimum length for FASTQ filter\n" - " --fastq_qmax INT Maximum base quality value for FASTQ input (41)\n" - " --fastq_qmaxout INT Maximum base quality value for FASTQ output\n" - " --fastq_qmin INT Minimum base quality value for FASTQ input (0)\n" - " --fastq_stripleft INT Bases on the left to delete for FASTQ filter\n" - " --fastq_tail INT Length of tails of same quality score to count\n" - " --fastq_trunclen INT Read length for FASTQ filter truncation\n" - " --fastq_truncqual INT Base quality value for FASTQ filter truncation\n" - " --fastqout FILENAME FASTQ filename for passed seqs from FASTQ filter\n" - " --fastqout_discarded FNAME FASTQ filename for discarded by FASTQ filter\n" - " --label_suffix STRING Label to add to output for --fastx_revcomp\n" - "\n" - "Masking\n" - " --maskfasta FILENAME mask sequences in the given FASTA file\n" - "Options\n" - " --hardmask mask by replacing with N instead of lower case\n" - " --output FILENAME output to specified FASTA file\n" - " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" - "\n" - "Pairwise alignment\n" - " --allpairs_global FILENAME perform global alignment of all sequence pairs\n" - "Options (most searching options also apply)\n" - " --alnout FILENAME filename for human-readable alignment output\n" - " --acceptall output all pairwise alignments\n" - "\n" - "Searching\n" - " --usearch_global FILENAME filename of queries for global alignment search\n" - "Options\n" - " --alnout FILENAME filename for human-readable alignment output\n" - " --blast6out FILENAME filename for blast-like tab-separated output\n" - " --db FILENAME filename for FASTA formatted database for search\n" - " --dbmask none|dust|soft mask db with dust, soft or no method (dust)\n" - " --dbmatched FILENAME FASTA file for matching database sequences\n" - " --dbnotmatched FILENAME FASTA file for non-matching database sequences\n" - " --fastapairs FILENAME FASTA file with pairs of query and target\n" - " --fulldp full dynamic programming alignment (always on)\n" - " --gapext STRING penalties for gap extension (2I/1E)\n" - " --gapopen STRING penalties for gap opening (20I/2E)\n" - " --hardmask mask by replacing with N instead of lower case\n" - " --id REAL reject if identity lower\n" - " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" - " --idprefix INT reject if first n nucleotides do not match\n" - " --idsuffix INT reject if last n nucleotides do not match\n" - " --leftjust reject if terminal gaps at alignment left end\n" - " --match INT score for match (2)\n" - " --matched FILENAME FASTA file for matching query sequences\n" - " --maxaccepts INT number of hits to accept and show per strand (1)\n" - " --maxdiffs INT reject if more substitutions or indels\n" - " --maxgaps INT reject if more indels\n" - " --maxhits INT maximum number of hits to show (unlimited)\n" - " --maxid REAL reject if identity higher\n" - " --maxqsize INT reject if query abundance larger\n" - " --maxqt REAL reject if query/target length ratio higher\n" - " --maxrejects INT number of non-matching hits to consider (32)\n" - " --maxsizeratio REAL reject if query/target abundance ratio higher\n" - " --maxsl REAL reject if shorter/longer length ratio higher\n" - " --maxsubs INT reject if more substitutions\n" - " --mid REAL reject if percent identity lower, ignoring gaps\n" - " --mincols INT reject if alignment length shorter\n" - " --minqt REAL reject if query/target length ratio lower\n" - " --minsizeratio REAL reject if query/target abundance ratio lower\n" - " --minsl REAL reject if shorter/longer length ratio lower\n" - " --mintsize INT reject if target abundance lower\n" - " --mismatch INT score for mismatch (-4)\n" - " --notmatched FILENAME FASTA file for non-matching query sequences\n" - " --output_no_hits output non-matching queries to output files\n" - " --pattern STRING option is ignored\n" - " --qmask none|dust|soft mask query with dust, soft or no method (dust)\n" - " --query_cov REAL reject if fraction of query seq. aligned lower\n" - " --rightjust reject if terminal gaps at alignment right end\n" - " --rowlen INT width of alignment lines in alnout output (64)\n" - " --samheader include a header in the SAM output file\n" - " --samout FILENAME filename for SAM format output\n" - " --self reject if labels identical\n" - " --selfid reject if sequences identical\n" - " --sizeout write abundance annotation to dbmatched file\n" - " --slots INT option is ignored\n" - " --strand plus|both search plus or both strands (plus)\n" - " --target_cov REAL reject if fraction of target seq. aligned lower\n" - " --top_hits_only output only hits with identity equal to the best\n" - " --uc FILENAME filename for UCLUST-like output\n" - " --uc_allhits show all, not just top hit with uc output\n" - " --userfields STRING fields to output in userout file\n" - " --userout FILENAME filename for user-defined tab-separated output\n" - " --weak_id REAL include aligned hits with >= id; continue search\n" - " --wordlength INT length of words for database index 3-15 (8)\n" - "\n" - "Shuffling\n" - " --shuffle FILENAME shuffle order of sequences in FASTA file randomly\n" - "Options\n" - " --output FILENAME output to specified FASTA file\n" - " --randseed INT seed for PRNG, zero to use random data source (0)\n" - " --topn INT output just first n sequences\n" - "\n" - "Sorting\n" - " --sortbylength FILENAME sort sequences by length in given FASTA file\n" - " --sortbysize FILENAME abundance sort sequences in given FASTA file\n" - "Options\n" - " --maxsize INT maximum abundance for sortbysize\n" - " --minsize INT minimum abundance for sortbysize\n" - " --output FILENAME output FASTA file\n" - " --relabel STRING relabel with this prefix string after sorting\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sizeout include abundance information when relabelling\n" - " --topn INT output just top n seqs after sorting\n" - "\n" - "Subsampling\n" - " --fastx_subsample FILENAME subsample sequences from given FASTA file\n" - "Options\n" - " --fastaout FILENAME output FASTA file for subsamples\n" - " --randseed INT seed for PRNG, zero to use random data source (0)\n" - " --sample_pct REAL sampling percentage between 0.0 and 100.0\n" - " --sample_size INT sampling size\n" - " --sizein consider abundance info from input, do not ignore\n" - " --sizeout update abundance information in output\n" - " --xsize strip abundance information in output\n" - ); - } -} - -void cmd_allpairs_global() -{ - /* check options */ - - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_samout)) - fatal("No output files specified"); - - if (! (opt_acceptall || ((opt_id >= 0.0) && (opt_id <= 1.0)))) - fatal("Specify either --acceptall or --id with an identity from 0.0 to 1.0"); - - allpairs_global(cmdline, progheader); -} - -void cmd_usearch_global() -{ - /* check options */ - - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_dbmatched) && (!opt_dbnotmatched) && - (!opt_samout)) - fatal("No output files specified"); - - if (!opt_db) - fatal("Database filename not specified with --db"); - - if ((opt_id < 0.0) || (opt_id > 1.0)) - fatal("Identity between 0.0 and 1.0 must be specified with --id"); - - usearch_global(cmdline, progheader); -} - -void cmd_sortbysize() -{ - if (!opt_output) - fatal("FASTA output file for sortbysize must be specified with --output"); - - sortbysize(); -} - -void cmd_sortbylength() -{ - if (!opt_output) - fatal("FASTA output file for sortbylength must be specified with --output"); - - sortbylength(); -} - -void cmd_derep() -{ - if ((!opt_output) && (!opt_uc)) - fatal("Output file for derepl_fulllength must be specified with --output or --uc"); - - if (opt_derep_fulllength) - derep_fulllength(); - else - { - if (opt_strand > 1) - fatal("Option '--strand both' not supported with --derep_prefix"); - else - derep_prefix(); - } -} - -void cmd_shuffle() -{ - if (!opt_output) - fatal("Output file for shuffling must be specified with --output"); - - shuffle(); -} - -void cmd_subsample() -{ - if (!opt_fastaout) - fatal("Output file for subsampling must be specified with --fastaout"); - - if ((opt_sample_pct > 0) && (opt_sample_size > 0)) - fatal("Specify either --sample_pct or --sample_size, not both"); - - subsample(); -} - -void cmd_maskfasta() -{ - if (!opt_output) - fatal("Output file for masking must be specified with --output"); - - maskfasta(); -} - -void cmd_none() -{ - if (! opt_quiet) - fprintf(stderr, - "For help, please enter: %s --help\n" - "\n" - "For further details, please see the manual by entering: man vsearch\n" - "\n" - "Some basic command examples:\n" - "\n" - "vsearch --allpairs_global FILENAME --id 0.5 --alnout FILENAME\n" - "vsearch --cluster_fast FILENAME --id 0.97 --centroids FILENAME\n" - "vsearch --cluster_size FILENAME --id 0.97 --centroids FILENAME\n" - "vsearch --cluster_smallmem FILENAME --usersort --id 0.97 --centroids FILENAME\n" - "vsearch --derep_fulllength FILENAME --output FILENAME\n" - "vsearch --maskfasta FILENAME --output FILENAME\n" - "vsearch --shuffle FILENAME --output FILENAME\n" - "vsearch --sortbylength FILENAME --output FILENAME\n" - "vsearch --sortbysize FILENAME --output FILENAME\n" - "vsearch --uchime_denovo FILENAME --nonchimeras FILENAME\n" - "vsearch --uchime_ref FILENAME --db FILENAME --nonchimeras FILENAME\n" - "vsearch --usearch_global FILENAME --db FILENAME --id 0.97 --alnout FILENAME\n" - "\n", - progname); -} - -void cmd_fastx_revcomp() -{ - if ((!opt_fastaout) && (!opt_fastqout)) - fatal("No output files specified"); - - fastx_revcomp(); -} - -void cmd_cluster() -{ - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_centroids) && (!opt_clusters) && - (!opt_consout) && (!opt_msaout) && - (!opt_samout) && (!opt_profile)) - fatal("No output files specified"); - - if ((opt_id < 0.0) || (opt_id > 1.0)) - fatal("Identity between 0.0 and 1.0 must be specified with --id"); - - if (opt_cluster_fast) - cluster_fast(cmdline, progheader); - else if (opt_cluster_smallmem) - cluster_smallmem(cmdline, progheader); - else if (opt_cluster_size) - cluster_size(cmdline, progheader); -} - -void cmd_uchime() -{ - if ((!opt_chimeras) && (!opt_nonchimeras) && - (!opt_uchimeout) && (!opt_uchimealns)) - fatal("No output files specified"); - - if (opt_uchime_ref && ! opt_db) - fatal("Database filename not specified with --db"); - - if (opt_xn <= 1.0) - fatal("Argument to --xn must be > 1"); - - if (opt_dn <= 0.0) - fatal("Argument to --dn must be > 0"); - - if (opt_mindiffs <= 0) - fatal("Argument to --mindiffs must be > 0"); - - if (opt_mindiv <= 0.0) - fatal("Argument to --mindiv must be > 0"); - - if (opt_minh <= 0.0) - fatal("Argument to --minh must be > 0"); - - if (opt_abskew <= 1.0) - fatal("Argument to --abskew must be > 1"); - - chimera(); -} - -void cmd_fastq_filter() -{ - if ((!opt_fastqout) && (!opt_fastaout) && - (!opt_fastqout_discarded) && (!opt_fastaout_discarded)) - fatal("No output files specified"); - fastq_filter(); -} - -void fillheader() -{ - snprintf(progheader, 80, - "%s v%s_%s, %.1fGB RAM, %ld cores", - PROG_NAME, PROG_VERSION, PROG_ARCH, - arch_get_memtotal() / 1024.0 / 1024.0 / 1024.0, - sysconf(_SC_NPROCESSORS_ONLN)); -} - -void getentirecommandline(int argc, char *argv[]) -{ - int len = 0; - for (int i=0; i, + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ + +#include "vsearch.h" + +/* options */ + +bool opt_fastq_allowmergestagger; +bool opt_fastq_nostagger; +bool opt_fastq_eeout; +bool opt_clusterout_id; +bool opt_clusterout_sort; +bool opt_eeout; +bool opt_quiet; +bool opt_relabel_keep; +bool opt_relabel_md5; +bool opt_relabel_sha1; +bool opt_samheader; +bool opt_sizeorder; +bool opt_xsize; +char * opt_eetabbedout; +char * opt_fastaout_notmerged_fwd; +char * opt_fastaout_notmerged_rev; +char * opt_fastq_mergepairs; +char * opt_fastqout_notmerged_fwd; +char * opt_fastqout_notmerged_rev; +char * opt_allpairs_global; +char * opt_alnout; +char * opt_blast6out; +char * opt_borderline; +char * opt_centroids; +char * opt_chimeras; +char * opt_cluster_fast; +char * opt_cluster_size; +char * opt_cluster_smallmem; +char * opt_clusters; +char * opt_consout; +char * opt_db; +char * opt_dbmatched; +char * opt_dbnotmatched; +char * opt_derep_fulllength; +char * opt_derep_prefix; +char * opt_fastaout; +char * opt_fastaout_discarded; +char * opt_fastapairs; +char * opt_fastq_chars; +char * opt_fastq_convert; +char * opt_fastq_filter; +char * opt_fastq_stats; +char * opt_fastqout; +char * opt_fastqout_discarded; +char * opt_fastx_mask; +char * opt_fastx_revcomp; +char * opt_fastx_subsample; +char * opt_label_suffix; +char * opt_log; +char * opt_maskfasta; +char * opt_matched; +char * opt_msaout; +char * opt_nonchimeras; +char * opt_notmatched; +char * opt_output; +char * opt_pattern; +char * opt_profile; +char * opt_relabel; +char * opt_samout; +char * opt_search_exact; +char * opt_shuffle; +char * opt_sortbylength; +char * opt_sortbysize; +char * opt_uc; +char * opt_uchime_denovo; +char * opt_uchime_ref; +char * opt_uchimealns; +char * opt_uchimeout; +char * opt_usearch_global; +char * opt_userout; +char * opt_reverse; +double opt_abskew; +double opt_dn; +double opt_fastq_maxee; +double opt_fastq_maxee_rate; +double opt_id; +double opt_max_unmasked_pct; +double opt_maxid; +double opt_maxqt; +double opt_maxsizeratio; +double opt_maxsl; +double opt_mid; +double opt_min_unmasked_pct; +double opt_mindiv; +double opt_minh; +double opt_minqt; +double opt_minsizeratio; +double opt_minsl; +double opt_query_cov; +double opt_sample_pct; +double opt_target_cov; +double opt_weak_id; +double opt_xn; +int opt_acceptall; +int opt_alignwidth; +int opt_cons_truncate; +int opt_gap_extension_query_interior; +int opt_gap_extension_query_left; +int opt_gap_extension_query_right; +int opt_gap_extension_target_interior; +int opt_gap_extension_target_left; +int opt_gap_extension_target_right; +int opt_gap_open_query_interior; +int opt_gap_open_query_left; +int opt_gap_open_query_right; +int opt_gap_open_target_interior; +int opt_gap_open_target_left; +int opt_gap_open_target_right; +int opt_help; +int opt_mindiffs; +int opt_slots; +int opt_uchimeout5; +int opt_usersort; +int opt_version; +long opt_fastq_maxdiffs; +long opt_fastq_maxmergelen; +long opt_fastq_minmergelen; +long opt_fastq_minovlen; +long opt_dbmask; +long opt_fasta_width; +long opt_fastq_ascii; +long opt_fastq_asciiout; +long opt_fastq_maxns; +long opt_fastq_minlen; +long opt_fastq_qmax; +long opt_fastq_qmaxout; +long opt_fastq_qmin; +long opt_fastq_qminout; +long opt_fastq_stripleft; +long opt_fastq_tail; +long opt_fastq_trunclen; +long opt_fastq_truncqual; +long opt_fulldp; +long opt_hardmask; +long opt_iddef; +long opt_idprefix; +long opt_idsuffix; +long opt_leftjust; +long opt_match; +long opt_maxaccepts; +long opt_maxdiffs; +long opt_maxgaps; +long opt_maxhits; +long opt_maxqsize; +long opt_maxrejects; +long opt_maxseqlength; +long opt_maxsize; +long opt_maxsubs; +long opt_maxuniquesize; +long opt_mincols; +long opt_minseqlength; +long opt_minsize; +long opt_mintsize; +long opt_minuniquesize; +long opt_minwordmatches; +long opt_mismatch; +long opt_notrunclabels; +long opt_output_no_hits; +long opt_qmask; +long opt_randseed; +long opt_rightjust; +long opt_rowlen; +long opt_sample_size; +long opt_self; +long opt_selfid; +long opt_sizein; +long opt_sizeout; +long opt_strand; +long opt_threads; +long opt_top_hits_only; +long opt_topn; +long opt_uc_allhits; +long opt_wordlength; + +/* Other variables */ + +/* cpu features available */ + +long mmx_present = 0; +long sse_present = 0; +long sse2_present = 0; +long sse3_present = 0; +long ssse3_present = 0; +long sse41_present = 0; +long sse42_present = 0; +long popcnt_present = 0; +long avx_present = 0; +long avx2_present = 0; + +static char * progname; +static char progheader[80]; +static char * cmdline; +static time_t time_start; +static time_t time_finish; + +FILE * fp_log = 0; + +abundance_t * global_abundance; + +#define cpuid(f1, f2, a, b, c, d) \ + __asm__ __volatile__ ("cpuid" \ + : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ + : "a" (f1), "c" (f2)); + +void cpu_features_detect() +{ + unsigned int a, b, c, d; + + cpuid(0, 0, a, b, c, d); + unsigned int maxlevel = a & 0xff; + + if (maxlevel >= 1) + { + cpuid(1, 0, a, b, c, d); + mmx_present = (d >> 23) & 1; + sse_present = (d >> 25) & 1; + sse2_present = (d >> 26) & 1; + sse3_present = (c >> 0) & 1; + ssse3_present = (c >> 9) & 1; + sse41_present = (c >> 19) & 1; + sse42_present = (c >> 20) & 1; + popcnt_present = (c >> 23) & 1; + avx_present = (c >> 28) & 1; + + if (maxlevel >= 7) + { + cpuid(7, 0, a, b, c, d); + avx2_present = (b >> 5) & 1; + } + } +} + +void cpu_features_show() +{ + fprintf(stderr, "CPU features:"); + if (mmx_present) + fprintf(stderr, " mmx"); + if (sse_present) + fprintf(stderr, " sse"); + if (sse2_present) + fprintf(stderr, " sse2"); + if (sse3_present) + fprintf(stderr, " sse3"); + if (ssse3_present) + fprintf(stderr, " ssse3"); + if (sse41_present) + fprintf(stderr, " sse4.1"); + if (sse42_present) + fprintf(stderr, " sse4.2"); + if (popcnt_present) + fprintf(stderr, " popcnt"); + if (avx_present) + fprintf(stderr, " avx"); + if (avx2_present) + fprintf(stderr, " avx2"); + fprintf(stderr, "\n"); +} + + +void args_get_gap_penalty_string(char * arg, int is_open) +{ + /* See http://www.drive5.com/usearch/manual/aln_params.html + + --gapopen *E/10I/1E/2L/3RQ/4RT/1IQ + --gapext *E/10I/1E/2L/3RQ/4RT/1IQ + + integer or * + followed by I, E, L, R, Q or T characters + separated by / + * means infinitely high (disallow) + E=end + I=interior + L=left + R=right + Q=query + T=target + + E cannot be combined with L or R + + We do not support floating point values. Therefore, + all default score and penalties are multiplied by 2. + + */ + + char *p = arg; + + while (*p) + { + int skip = 0; + int pen = 0; + + if (sscanf(p, "%d%n", &pen, &skip) == 1) + { + p += skip; + } + else if (*p == '*') + { + pen = 1000; + p++; + } + else + fatal("Invalid gap penalty argument (%s)", p); + + char * q = p; + + int set_E = 0; + int set_I = 0; + int set_L = 0; + int set_R = 0; + int set_Q = 0; + int set_T = 0; + + while((*p) && (*p != '/')) + { + switch(*p) + { + case 'E': + set_E = 1; + break; + case 'I': + set_I = 1; + break; + case 'L': + set_L = 1; + break; + case 'R': + set_R = 1; + break; + case 'Q': + set_Q = 1; + break; + case 'T': + set_T = 1; + break; + default: + fatal("Invalid char '%.1s' in gap penalty string", p); + break; + } + p++; + } + + if (*p == '/') + p++; + + if (set_E && (set_L || set_R)) + fatal("Invalid gap penalty string (E and L or R) '%s'", q); + + if (set_E) + { + set_L = 1; + set_R = 1; + } + + /* if neither L, I, R nor E is specified, it applies to all */ + + if ((!set_L) && (!set_I) && (!set_R)) + { + set_L = 1; + set_I = 1; + set_R = 1; + } + + /* if neither Q nor T is specified, it applies to both */ + + if ((!set_Q) && (!set_T)) + { + set_Q = 1; + set_T = 1; + } + + if (is_open) + { + if (set_Q) + { + if (set_L) + opt_gap_open_query_left = pen; + if (set_I) + opt_gap_open_query_interior = pen; + if (set_R) + opt_gap_open_query_right = pen; + } + if (set_T) + { + if (set_L) + opt_gap_open_target_left = pen; + if (set_I) + opt_gap_open_target_interior = pen; + if (set_R) + opt_gap_open_target_right = pen; + } + } + else + { + if (set_Q) + { + if (set_L) + opt_gap_extension_query_left = pen; + if (set_I) + opt_gap_extension_query_interior = pen; + if (set_R) + opt_gap_extension_query_right = pen; + } + if (set_T) + { + if (set_L) + opt_gap_extension_target_left = pen; + if (set_I) + opt_gap_extension_target_interior = pen; + if (set_R) + opt_gap_extension_target_right = pen; + } + } + } +} + + +long args_getlong(char * arg) +{ + int len = 0; + long temp = 0; + int ret = sscanf(arg, "%ld%n", &temp, &len); + if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) + fatal("Illegal option argument"); + return temp; +} + +double args_getdouble(char * arg) +{ + int len = 0; + double temp = 0; + int ret = sscanf(arg, "%lf%n", &temp, &len); + if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) + fatal("Illegal option argument"); + return temp; +} + +void args_init(int argc, char **argv) +{ + /* Set defaults */ + + progname = argv[0]; + + opt_abskew = 2.0; + opt_acceptall = 0; + opt_alignwidth = 80; + opt_allpairs_global = 0; + opt_alnout = 0; + opt_blast6out = 0; + opt_borderline = 0; + opt_centroids = 0; + opt_chimeras = 0; + opt_cluster_fast = 0; + opt_cluster_size = 0; + opt_cluster_smallmem = 0; + opt_clusterout_id = 0; + opt_clusterout_sort = 0; + opt_clusters = 0; + opt_cons_truncate = 0; + opt_consout = 0; + opt_db = 0; + opt_dbmask = MASK_DUST; + opt_dbmatched = 0; + opt_dbnotmatched = 0; + opt_derep_fulllength = 0; + opt_derep_prefix = 0; + opt_dn = 1.4; + opt_eeout = 0; + opt_eetabbedout = 0; + opt_fastaout_notmerged_fwd = 0; + opt_fastaout_notmerged_rev = 0; + opt_fasta_width = 80; + opt_fastaout = 0; + opt_fastaout_discarded = 0; + opt_fastapairs = 0; + opt_fastq_allowmergestagger = 0; + opt_fastq_ascii = 33; + opt_fastq_asciiout = 33; + opt_fastq_chars = 0; + opt_fastq_convert = 0; + opt_fastq_eeout = 0; + opt_fastq_filter = 0; + opt_fastq_maxdiffs = 1000000; + opt_fastq_maxee = DBL_MAX; + opt_fastq_maxee_rate = DBL_MAX; + opt_fastq_maxmergelen = 1000000; + opt_fastq_maxns = LONG_MAX; + opt_fastq_mergepairs = 0; + opt_fastq_minlen = 1; + opt_fastq_minmergelen = 0; + opt_fastq_minovlen = 16; + opt_fastq_nostagger = 1; + opt_fastqout_notmerged_fwd = 0; + opt_fastqout_notmerged_rev = 0; + opt_fastq_qmax = 41; + opt_fastq_qmaxout = 41; + opt_fastq_qmin = 0; + opt_fastq_qminout = 0; + opt_fastq_stats = 0; + opt_fastq_stripleft = 0; + opt_fastq_tail = 4; + opt_fastq_trunclen = 0; + opt_fastq_truncqual = LONG_MIN; + opt_fastqout = 0; + opt_fastqout_discarded = 0; + opt_fastx_mask = 0; + opt_fastx_revcomp = 0; + opt_fastx_subsample = 0; + opt_fulldp = 0; + opt_gap_extension_query_interior=2; + opt_gap_extension_query_left=1; + opt_gap_extension_query_right=1; + opt_gap_extension_target_interior=2; + opt_gap_extension_target_left=1; + opt_gap_extension_target_right=1; + opt_gap_open_query_interior=20; + opt_gap_open_query_left=2; + opt_gap_open_query_right=2; + opt_gap_open_target_interior=20; + opt_gap_open_target_left=2; + opt_gap_open_target_right=2; + opt_hardmask = 0; + opt_help = 0; + opt_id = -1.0; + opt_iddef = 2; + opt_idprefix = 0; + opt_idsuffix = 0; + opt_label_suffix = 0; + opt_leftjust = 0; + opt_log = 0; + opt_maskfasta = 0; + opt_match = 2; + opt_matched = 0; + opt_max_unmasked_pct = 100.0; + opt_maxaccepts = 1; + opt_maxdiffs = INT_MAX; + opt_maxgaps = INT_MAX; + opt_maxhits = LONG_MAX; + opt_maxid = 1.0; + opt_maxqsize = INT_MAX; + opt_maxqt = DBL_MAX; + opt_maxrejects = -1; + opt_maxseqlength = 50000; + opt_maxsize = LONG_MAX; + opt_maxsizeratio = DBL_MAX; + opt_maxsl = DBL_MAX; + opt_maxsubs = INT_MAX; + opt_maxuniquesize = LONG_MAX; + opt_mid = 0.0; + opt_min_unmasked_pct = 0.0; + opt_mincols = 0; + opt_mindiffs = 3; + opt_mindiv = 0.8; + opt_minh = 0.28; + opt_minqt = 0.0; + opt_minseqlength = 0; + opt_minsize = 0; + opt_minsizeratio = 0.0; + opt_minsl = 0.0; + opt_mintsize = 0; + opt_minuniquesize = 0; + opt_minwordmatches = 0; + opt_mismatch = -4; + opt_msaout = 0; + opt_nonchimeras = 0; + opt_notmatched = 0; + opt_notrunclabels = 0; + opt_output = 0; + opt_output_no_hits = 0; + opt_pattern = 0; + opt_profile = 0; + opt_qmask = MASK_DUST; + opt_query_cov = 0.0; + opt_quiet = false; + opt_randseed = 0; + opt_relabel = 0; + opt_relabel_keep = 0; + opt_relabel_md5 = 0; + opt_relabel_sha1 = 0; + opt_reverse = 0; + opt_rightjust = 0; + opt_rowlen = 64; + opt_samheader = 0; + opt_samout = 0; + opt_sample_pct = 0; + opt_sample_size = 0; + opt_search_exact = 0; + opt_self = 0; + opt_selfid = 0; + opt_shuffle = 0; + opt_sizein = 0; + opt_sizeorder = 0; + opt_sizeout = 0; + opt_slots = 0; + opt_sortbylength = 0; + opt_sortbysize = 0; + opt_strand = 1; + opt_target_cov = 0.0; + opt_threads = 0; + opt_top_hits_only = 0; + opt_topn = LONG_MAX; + opt_uc = 0; + opt_uc_allhits = 0; + opt_uchime_denovo = 0; + opt_uchime_ref = 0; + opt_uchimealns = 0; + opt_uchimeout = 0; + opt_uchimeout5 = 0; + opt_usearch_global = 0; + opt_userout = 0; + opt_usersort = 0; + opt_version = 0; + opt_weak_id = 10.0; + opt_wordlength = 8; + opt_xn = 8.0; + opt_xsize = 0; + + opterr = 1; + + static struct option long_options[] = + + { + {"help", no_argument, 0, 0 }, + {"version", no_argument, 0, 0 }, + {"alnout", required_argument, 0, 0 }, + {"usearch_global", required_argument, 0, 0 }, + {"db", required_argument, 0, 0 }, + {"id", required_argument, 0, 0 }, + {"maxaccepts", required_argument, 0, 0 }, + {"maxrejects", required_argument, 0, 0 }, + {"wordlength", required_argument, 0, 0 }, + {"match", required_argument, 0, 0 }, + {"mismatch", required_argument, 0, 0 }, + {"fulldp", no_argument, 0, 0 }, + {"strand", required_argument, 0, 0 }, + {"threads", required_argument, 0, 0 }, + {"gapopen", required_argument, 0, 0 }, + {"gapext", required_argument, 0, 0 }, + {"rowlen", required_argument, 0, 0 }, + {"userfields", required_argument, 0, 0 }, + {"userout", required_argument, 0, 0 }, + {"self", no_argument, 0, 0 }, + {"blast6out", required_argument, 0, 0 }, + {"uc", required_argument, 0, 0 }, + {"weak_id", required_argument, 0, 0 }, + {"uc_allhits", no_argument, 0, 0 }, + {"notrunclabels", no_argument, 0, 0 }, + {"sortbysize", required_argument, 0, 0 }, + {"output", required_argument, 0, 0 }, + {"minsize", required_argument, 0, 0 }, + {"maxsize", required_argument, 0, 0 }, + {"relabel", required_argument, 0, 0 }, + {"sizeout", no_argument, 0, 0 }, + {"derep_fulllength", required_argument, 0, 0 }, + {"minseqlength", required_argument, 0, 0 }, + {"minuniquesize", required_argument, 0, 0 }, + {"topn", required_argument, 0, 0 }, + {"maxseqlength", required_argument, 0, 0 }, + {"sizein", no_argument, 0, 0 }, + {"sortbylength", required_argument, 0, 0 }, + {"matched", required_argument, 0, 0 }, + {"notmatched", required_argument, 0, 0 }, + {"dbmatched", required_argument, 0, 0 }, + {"dbnotmatched", required_argument, 0, 0 }, + {"fastapairs", required_argument, 0, 0 }, + {"output_no_hits", no_argument, 0, 0 }, + {"maxhits", required_argument, 0, 0 }, + {"top_hits_only", no_argument, 0, 0 }, + {"fasta_width", required_argument, 0, 0 }, + {"query_cov", required_argument, 0, 0 }, + {"target_cov", required_argument, 0, 0 }, + {"idprefix", required_argument, 0, 0 }, + {"idsuffix", required_argument, 0, 0 }, + {"minqt", required_argument, 0, 0 }, + {"maxqt", required_argument, 0, 0 }, + {"minsl", required_argument, 0, 0 }, + {"maxsl", required_argument, 0, 0 }, + {"leftjust", no_argument, 0, 0 }, + {"rightjust", no_argument, 0, 0 }, + {"selfid", no_argument, 0, 0 }, + {"maxid", required_argument, 0, 0 }, + {"minsizeratio", required_argument, 0, 0 }, + {"maxsizeratio", required_argument, 0, 0 }, + {"maxdiffs", required_argument, 0, 0 }, + {"maxsubs", required_argument, 0, 0 }, + {"maxgaps", required_argument, 0, 0 }, + {"mincols", required_argument, 0, 0 }, + {"maxqsize", required_argument, 0, 0 }, + {"mintsize", required_argument, 0, 0 }, + {"mid", required_argument, 0, 0 }, + {"shuffle", required_argument, 0, 0 }, + {"randseed", required_argument, 0, 0 }, + {"maskfasta", required_argument, 0, 0 }, + {"hardmask", no_argument, 0, 0 }, + {"qmask", required_argument, 0, 0 }, + {"dbmask", required_argument, 0, 0 }, + {"cluster_smallmem", required_argument, 0, 0 }, + {"cluster_fast", required_argument, 0, 0 }, + {"centroids", required_argument, 0, 0 }, + {"clusters", required_argument, 0, 0 }, + {"consout", required_argument, 0, 0 }, + {"cons_truncate", no_argument, 0, 0 }, + {"msaout", required_argument, 0, 0 }, + {"usersort", no_argument, 0, 0 }, + {"xn", required_argument, 0, 0 }, + {"iddef", required_argument, 0, 0 }, + {"slots", required_argument, 0, 0 }, + {"pattern", required_argument, 0, 0 }, + {"maxuniquesize", required_argument, 0, 0 }, + {"abskew", required_argument, 0, 0 }, + {"chimeras", required_argument, 0, 0 }, + {"dn", required_argument, 0, 0 }, + {"mindiffs", required_argument, 0, 0 }, + {"mindiv", required_argument, 0, 0 }, + {"minh", required_argument, 0, 0 }, + {"nonchimeras", required_argument, 0, 0 }, + {"uchime_denovo", required_argument, 0, 0 }, + {"uchime_ref", required_argument, 0, 0 }, + {"uchimealns", required_argument, 0, 0 }, + {"uchimeout", required_argument, 0, 0 }, + {"uchimeout5", no_argument, 0, 0 }, + {"alignwidth", required_argument, 0, 0 }, + {"allpairs_global", required_argument, 0, 0 }, + {"acceptall", no_argument, 0, 0 }, + {"cluster_size", required_argument, 0, 0 }, + {"samout", required_argument, 0, 0 }, + {"log", required_argument, 0, 0 }, + {"quiet", no_argument, 0, 0 }, + {"fastx_subsample", required_argument, 0, 0 }, + {"sample_pct", required_argument, 0, 0 }, + {"fastq_chars", required_argument, 0, 0 }, + {"profile", required_argument, 0, 0 }, + {"sample_size", required_argument, 0, 0 }, + {"fastaout", required_argument, 0, 0 }, + {"xsize", no_argument, 0, 0 }, + {"clusterout_id", no_argument, 0, 0 }, + {"clusterout_sort", no_argument, 0, 0 }, + {"borderline", required_argument, 0, 0 }, + {"relabel_sha1", no_argument, 0, 0 }, + {"relabel_md5", no_argument, 0, 0 }, + {"derep_prefix", required_argument, 0, 0 }, + {"fastq_filter", required_argument, 0, 0 }, + {"fastqout", required_argument, 0, 0 }, + {"fastaout_discarded", required_argument, 0, 0 }, + {"fastqout_discarded", required_argument, 0, 0 }, + {"fastq_truncqual", required_argument, 0, 0 }, + {"fastq_maxee", required_argument, 0, 0 }, + {"fastq_trunclen", required_argument, 0, 0 }, + {"fastq_minlen", required_argument, 0, 0 }, + {"fastq_stripleft", required_argument, 0, 0 }, + {"fastq_maxee_rate", required_argument, 0, 0 }, + {"fastq_maxns", required_argument, 0, 0 }, + {"eeout", no_argument, 0, 0 }, + {"fastq_ascii", required_argument, 0, 0 }, + {"fastq_qmin", required_argument, 0, 0 }, + {"fastq_qmax", required_argument, 0, 0 }, + {"fastq_qmaxout", required_argument, 0, 0 }, + {"fastq_stats", required_argument, 0, 0 }, + {"fastq_tail", required_argument, 0, 0 }, + {"fastx_revcomp", required_argument, 0, 0 }, + {"label_suffix", required_argument, 0, 0 }, + {"h", no_argument, 0, 0 }, + {"samheader", no_argument, 0, 0 }, + {"sizeorder", no_argument, 0, 0 }, + {"minwordmatches", required_argument, 0, 0 }, + {"v", no_argument, 0, 0 }, + {"relabel_keep", no_argument, 0, 0 }, + {"search_exact", required_argument, 0, 0 }, + {"fastx_mask", required_argument, 0, 0 }, + {"min_unmasked_pct", required_argument, 0, 0 }, + {"max_unmasked_pct", required_argument, 0, 0 }, + {"fastq_convert", required_argument, 0, 0 }, + {"fastq_asciiout", required_argument, 0, 0 }, + {"fastq_qminout", required_argument, 0, 0 }, + {"fastq_mergepairs", required_argument, 0, 0 }, + {"fastq_eeout", no_argument, 0, 0 }, + {"fastqout_notmerged_fwd",required_argument, 0, 0 }, + {"fastqout_notmerged_rev",required_argument, 0, 0 }, + {"fastq_minovlen", required_argument, 0, 0 }, + {"fastq_minmergelen", required_argument, 0, 0 }, + {"fastq_maxmergelen", required_argument, 0, 0 }, + {"fastq_nostagger", no_argument, 0, 0 }, + {"fastq_allowmergestagger", no_argument, 0, 0 }, + {"fastq_maxdiffs", required_argument, 0, 0 }, + {"fastaout_notmerged_fwd",required_argument, 0, 0 }, + {"fastaout_notmerged_rev",required_argument, 0, 0 }, + {"reverse", required_argument, 0, 0 }, + {"eetabbedout", required_argument, 0, 0 }, + { 0, 0, 0, 0 } + }; + + int option_count = sizeof(long_options) / sizeof(struct option); + bool options_selected[option_count]; + + memset(options_selected, 0, sizeof(options_selected)); + + int option_index = 0; + int c; + + while ((c = getopt_long_only(argc, argv, "", long_options, + &option_index)) == 0) + { + if (option_index < option_count) + options_selected[option_index] = 1; + + switch(option_index) + { + case 0: + opt_help = 1; + break; + + case 1: + opt_version = 1; + break; + + case 2: + opt_alnout = optarg; + break; + + case 3: + opt_usearch_global = optarg; + break; + + case 4: + opt_db = optarg; + break; + + case 5: + opt_id = args_getdouble(optarg); + break; + + case 6: + opt_maxaccepts = args_getlong(optarg); + break; + + case 7: + opt_maxrejects = args_getlong(optarg); + break; + + case 8: + opt_wordlength = args_getlong(optarg); + break; + + case 9: + opt_match = args_getlong(optarg); + break; + + case 10: + opt_mismatch = args_getlong(optarg); + break; + + case 11: + opt_fulldp = 1; + break; + + case 12: + if (strcasecmp(optarg, "plus") == 0) + opt_strand = 1; + else if (strcasecmp(optarg, "both") == 0) + opt_strand = 2; + else + opt_strand = 0; + break; + + case 13: + opt_threads = (long) args_getdouble(optarg); + break; + + case 14: + args_get_gap_penalty_string(optarg, 1); + break; + + case 15: + args_get_gap_penalty_string(optarg, 0); + break; + + case 16: + opt_rowlen = args_getlong(optarg); + break; + + case 17: + if (!parse_userfields_arg(optarg)) + fatal("Unrecognized userfield argument"); + break; + + case 18: + opt_userout = optarg; + break; + + case 19: + opt_self = 1; + break; + + case 20: + opt_blast6out = optarg; + break; + + case 21: + opt_uc = optarg; + break; + + case 22: + opt_weak_id = args_getdouble(optarg); + break; + + case 23: + opt_uc_allhits = 1; + break; + + case 24: + opt_notrunclabels = 1; + break; + + case 25: + opt_sortbysize = optarg; + break; + + case 26: + opt_output = optarg; + break; + + case 27: + opt_minsize = args_getlong(optarg); + break; + + case 28: + opt_maxsize = args_getlong(optarg); + break; + + case 29: + opt_relabel = optarg; + break; + + case 30: + opt_sizeout = 1; + break; + + case 31: + opt_derep_fulllength = optarg; + break; + + case 32: + opt_minseqlength = args_getlong(optarg); + break; + + case 33: + opt_minuniquesize = args_getlong(optarg); + break; + + case 34: + opt_topn = args_getlong(optarg); + break; + + case 35: + opt_maxseqlength = args_getlong(optarg); + break; + + case 36: + opt_sizein = 1; + break; + + case 37: + opt_sortbylength = optarg; + break; + + case 38: + opt_matched = optarg; + break; + + case 39: + opt_notmatched = optarg; + break; + + case 40: + opt_dbmatched = optarg; + break; + + case 41: + opt_dbnotmatched = optarg; + break; + + case 42: + opt_fastapairs = optarg; + break; + + case 43: + opt_output_no_hits = 1; + break; + + case 44: + opt_maxhits = args_getlong(optarg); + break; + + case 45: + opt_top_hits_only = 1; + break; + + case 46: + opt_fasta_width = args_getlong(optarg); + break; + + case 47: + opt_query_cov = args_getdouble(optarg); + break; + + case 48: + opt_target_cov = args_getdouble(optarg); + break; + + case 49: + opt_idprefix = args_getlong(optarg); + break; + + case 50: + opt_idsuffix = args_getlong(optarg); + break; + + case 51: + opt_minqt = args_getdouble(optarg); + break; + + case 52: + opt_maxqt = args_getdouble(optarg); + break; + + case 53: + opt_minsl = args_getdouble(optarg); + break; + + case 54: + opt_maxsl = args_getdouble(optarg); + break; + + case 55: + opt_leftjust = 1; + break; + + case 56: + opt_rightjust = 1; + break; + + case 57: + opt_selfid = 1; + break; + + case 58: + opt_maxid = args_getdouble(optarg); + break; + + case 59: + opt_minsizeratio = args_getdouble(optarg); + break; + + case 60: + opt_maxsizeratio = args_getdouble(optarg); + break; + + case 61: + opt_maxdiffs = args_getlong(optarg); + break; + + case 62: + opt_maxsubs = args_getlong(optarg); + break; + + case 63: + opt_maxgaps = args_getlong(optarg); + break; + + case 64: + opt_mincols = args_getlong(optarg); + break; + + case 65: + opt_maxqsize = args_getlong(optarg); + break; + + case 66: + opt_mintsize = args_getlong(optarg); + break; + + case 67: + opt_mid = args_getdouble(optarg); + break; + + case 68: + opt_shuffle = optarg; + break; + + case 69: + opt_randseed = args_getlong(optarg); + break; + + case 70: + opt_maskfasta = optarg; + break; + + case 71: + opt_hardmask = 1; + break; + + case 72: + if (strcasecmp(optarg, "none") == 0) + opt_qmask = MASK_NONE; + else if (strcasecmp(optarg, "dust") == 0) + opt_qmask = MASK_DUST; + else if (strcasecmp(optarg, "soft") == 0) + opt_qmask = MASK_SOFT; + else + opt_qmask = MASK_ERROR; + break; + + case 73: + if (strcasecmp(optarg, "none") == 0) + opt_dbmask = MASK_NONE; + else if (strcasecmp(optarg, "dust") == 0) + opt_dbmask = MASK_DUST; + else if (strcasecmp(optarg, "soft") == 0) + opt_dbmask = MASK_SOFT; + else + opt_dbmask = MASK_ERROR; + break; + + case 74: + opt_cluster_smallmem = optarg; + break; + + case 75: + opt_cluster_fast = optarg; + break; + + case 76: + opt_centroids = optarg; + break; + + case 77: + opt_clusters = optarg; + break; + + case 78: + opt_consout = optarg; + break; + + case 79: + fprintf(stderr, "WARNING: Option --cons_truncate is ignored\n"); + opt_cons_truncate = 1; + break; + + case 80: + opt_msaout = optarg; + break; + + case 81: + opt_usersort = 1; + break; + + case 82: + opt_xn = args_getdouble(optarg); + break; + + case 83: + opt_iddef = args_getlong(optarg); + break; + + case 84: + fprintf(stderr, "WARNING: Option --slots is ignored\n"); + opt_slots = args_getlong(optarg); + break; + + case 85: + fprintf(stderr, "WARNING: Option --pattern is ignored\n"); + opt_pattern = optarg; + break; + + case 86: + opt_maxuniquesize = args_getlong(optarg); + break; + + case 87: + opt_abskew = args_getdouble(optarg); + break; + + case 88: + opt_chimeras = optarg; + break; + + case 89: + opt_dn = args_getdouble(optarg); + break; + + case 90: + opt_mindiffs = args_getlong(optarg); + break; + + case 91: + opt_mindiv = args_getdouble(optarg); + break; + + case 92: + opt_minh = args_getdouble(optarg); + break; + + case 93: + opt_nonchimeras = optarg; + break; + + case 94: + opt_uchime_denovo = optarg; + break; + + case 95: + opt_uchime_ref = optarg; + break; + + case 96: + opt_uchimealns = optarg; + break; + + case 97: + opt_uchimeout = optarg; + break; + + case 98: + opt_uchimeout5 = 1; + break; + + case 99: + opt_alignwidth = args_getlong(optarg); + break; + + case 100: + opt_allpairs_global = optarg; + break; + + case 101: + opt_acceptall = 1; + break; + + case 102: + opt_cluster_size = optarg; + break; + + case 103: + opt_samout = optarg; + break; + + case 104: + opt_log = optarg; + break; + + case 105: + opt_quiet = true; + break; + + case 106: + opt_fastx_subsample = optarg; + break; + + case 107: + opt_sample_pct = args_getdouble(optarg); + break; + + case 108: + opt_fastq_chars = optarg; + break; + + case 109: + opt_profile = optarg; + break; + + case 110: + opt_sample_size = args_getlong(optarg); + break; + + case 111: + opt_fastaout = optarg; + break; + + case 112: + opt_xsize = 1; + break; + + case 113: + opt_clusterout_id = 1; + break; + + case 114: + opt_clusterout_sort = 1; + break; + + case 115: + opt_borderline = optarg; + break; + + case 116: + opt_relabel_sha1 = 1; + break; + + case 117: + opt_relabel_md5 = 1; + break; + + case 118: + opt_derep_prefix = optarg; + break; + + case 119: + opt_fastq_filter = optarg; + break; + + case 120: + opt_fastqout = optarg; + break; + + case 121: + opt_fastaout_discarded = optarg; + break; + + case 122: + opt_fastqout_discarded = optarg; + break; + + case 123: + opt_fastq_truncqual = args_getlong(optarg); + break; + + case 124: + opt_fastq_maxee = args_getdouble(optarg); + break; + + case 125: + opt_fastq_trunclen = args_getlong(optarg); + break; + + case 126: + opt_fastq_minlen = args_getlong(optarg); + break; + + case 127: + opt_fastq_stripleft = args_getlong(optarg); + break; + + case 128: + opt_fastq_maxee_rate = args_getdouble(optarg); + break; + + case 129: + opt_fastq_maxns = args_getlong(optarg); + break; + + case 130: + opt_eeout = 1; + break; + + case 131: + opt_fastq_ascii = args_getlong(optarg); + break; + + case 132: + opt_fastq_qmin = args_getlong(optarg); + break; + + case 133: + opt_fastq_qmax = args_getlong(optarg); + break; + + case 134: + opt_fastq_qmaxout = args_getlong(optarg); + break; + + case 135: + opt_fastq_stats = optarg; + break; + + case 136: + opt_fastq_tail = args_getlong(optarg); + break; + + case 137: + opt_fastx_revcomp = optarg; + break; + + case 138: + opt_label_suffix = optarg; + break; + + case 139: + opt_help = 1; + break; + + case 140: + opt_samheader = 1; + break; + + case 141: + opt_sizeorder = 1; + break; + + case 142: + opt_minwordmatches = args_getlong(optarg); + break; + + case 143: + opt_version = 1; + break; + + case 144: + opt_relabel_keep = 1; + break; + + case 145: + opt_search_exact = optarg; + break; + + case 146: + opt_fastx_mask = optarg; + break; + + case 147: + opt_min_unmasked_pct = args_getdouble(optarg); + break; + + case 148: + opt_max_unmasked_pct = args_getdouble(optarg); + break; + + case 149: + opt_fastq_convert = optarg; + break; + + case 150: + opt_fastq_asciiout = args_getlong(optarg); + break; + + case 151: + opt_fastq_qminout = args_getlong(optarg); + break; + + case 152: + opt_fastq_mergepairs = optarg; + break; + + case 153: + opt_fastq_eeout = 1; + break; + + case 154: + opt_fastqout_notmerged_fwd = optarg; + break; + + case 155: + opt_fastqout_notmerged_rev = optarg; + break; + + case 156: + opt_fastq_minovlen = args_getlong(optarg); + break; + + case 157: + opt_fastq_minmergelen = args_getlong(optarg); + break; + + case 158: + opt_fastq_maxmergelen = args_getlong(optarg); + break; + + case 159: + opt_fastq_nostagger = optarg; + break; + + case 160: + opt_fastq_allowmergestagger = 1; + break; + + case 161: + opt_fastq_maxdiffs = args_getlong(optarg); + break; + + case 162: + opt_fastaout_notmerged_fwd = optarg; + break; + + case 163: + opt_fastaout_notmerged_rev = optarg; + break; + + case 164: + opt_reverse = optarg; + break; + + case 165: + opt_eetabbedout = optarg; + break; + + default: + fatal("Internal error in option parsing"); + } + } + + /* Terminate if ambiguous or illegal options have been detected */ + if (c != -1) + exit(EXIT_FAILURE); + + /* Terminate after reporting any extra non-option arguments */ + if (optind < argc) + fatal("Unrecognized string on command line (%s)", argv[optind]); + + int commands = 0; + + if (opt_fastq_chars) + commands++; + if (opt_fastq_filter) + commands++; + if (opt_fastq_stats) + commands++; + if (opt_usearch_global) + commands++; + if (opt_sortbysize) + commands++; + if (opt_sortbylength) + commands++; + if (opt_derep_fulllength) + commands++; + if (opt_derep_prefix) + commands++; + if (opt_help) + commands++; + if (opt_version) + commands++; + if (opt_shuffle) + commands++; + if (opt_fastx_subsample) + commands++; + if (opt_maskfasta) + commands++; + if (opt_cluster_smallmem) + commands++; + if (opt_cluster_fast) + commands++; + if (opt_cluster_size) + commands++; + if (opt_uchime_denovo) + commands++; + if (opt_uchime_ref) + commands++; + if (opt_allpairs_global) + commands++; + if (opt_fastx_revcomp) + commands++; + if (opt_search_exact) + commands++; + if (opt_fastx_mask) + commands++; + if (opt_fastq_convert) + commands++; + if (opt_fastq_mergepairs) + commands++; + + if (commands > 1) + fatal("More than one command specified"); + + if (opt_weak_id > opt_id) + opt_weak_id = opt_id; + + if (opt_maxrejects == -1) + { + if (opt_cluster_fast) + opt_maxrejects = 8; + else + opt_maxrejects = 32; + } + + if (opt_minseqlength < 0) + fatal("The argument to --minseqlength must be positive"); + + if (opt_maxaccepts < 0) + fatal("The argument to --maxaccepts must not be negative"); + + if (opt_maxrejects < 0) + fatal("The argument to --maxrejects must not be negative"); + + if ((opt_threads < 0) || (opt_threads > 1024)) + fatal("The argument to --threads must be in the range 0 (default) to 1024"); + + if ((opt_wordlength < 7) || (opt_wordlength > 15)) + fatal("The argument to --wordlength must be in the range 7 to 15"); + + if ((opt_iddef < 0) || (opt_iddef > 4)) + fatal("The argument to --iddef must in the range 0 to 4"); + + if (opt_match <= 0) + fatal("The argument to --match must be positive"); + + if (opt_mismatch >= 0) + fatal("The argument to --mismatch must be negative"); + + if (opt_alignwidth < 0) + fatal("The argument to --alignwidth must not be negative"); + + if (opt_rowlen < 0) + fatal("The argument to --rowlen must not be negative"); + + if (opt_strand < 1) + fatal("The argument to --strand must be plus or both"); + + if (opt_qmask == MASK_ERROR) + fatal("The argument to --qmask must be none, dust or soft"); + + if (opt_dbmask == MASK_ERROR) + fatal("The argument to --dbmask must be none, dust or soft"); + + if ((opt_sample_pct < 0.0) || (opt_sample_pct > 100.0)) + fatal("The argument to --sample_pct must be in the range 0.0 to 100.0"); + + if (opt_sample_size < 0) + fatal("The argument to --sample_size must not be negative"); + + if (opt_relabel_sha1 && opt_relabel_md5) + fatal("Specify either --relabel_sha1 or --relabel_md5, not both"); + + if (opt_fastq_tail < 1) + fatal("The argument to --fastq_tail must be positive"); + + if (opt_minwordmatches < 0) + fatal("The argument to --minwordmatches must not be negative"); + + if ((opt_min_unmasked_pct < 0.0) && (opt_min_unmasked_pct > 100.0)) + fatal("The argument to --min_unmasked_pct must be between 0.0 and 100.0"); + + if ((opt_max_unmasked_pct < 0.0) && (opt_max_unmasked_pct > 100.0)) + fatal("The argument to --max_unmasked_pct must be between 0.0 and 100.0"); + + if (opt_min_unmasked_pct > opt_max_unmasked_pct) + fatal("The argument to --min_unmasked_pct cannot be larger than to --max_unmasked_pct"); + + if (opt_fastq_qmin > opt_fastq_qmax) + fatal("The argument to --fastq_qmin cannot be larger than to --fastq_qmax"); + + if (opt_fastq_qminout > opt_fastq_qmaxout) + fatal("The argument to --fastq_qminout cannot be larger than to --fastq_qmaxout"); + + /* TODO: check valid range of gap penalties */ + + /* adapt/adjust parameters */ + +#if 1 + + /* + Adjust gap open penalty according to convention. + + The specified gap open penalties include the penalty for + a single nucleotide gap: + + gap penalty = gap open penalty + (gap length - 1) * gap extension penalty + + The rest of the code assumes the first nucleotide gap penalty is not + included in the gap opening penalty. + */ + + opt_gap_open_query_left -= opt_gap_extension_query_left; + opt_gap_open_target_left -= opt_gap_extension_target_left; + opt_gap_open_query_interior -= opt_gap_extension_query_interior; + opt_gap_open_target_interior -= opt_gap_extension_target_interior; + opt_gap_open_query_right -= opt_gap_extension_query_right; + opt_gap_open_target_right -= opt_gap_extension_target_right; + +#endif + + if (opt_minwordmatches == 0) + opt_minwordmatches = minwordmatches_defaults[opt_wordlength]; + + if (opt_threads == 0) { + int numProcessors = 1; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + numProcessors = sysconf(_SC_NPROCESSORS_ONLN) +#else + SYSTEM_INFO sysinfo; + GetSystemInfo(&sysinfo); + numProcessors = sysinfo.dwNumberOfProcessors; +#endif + + opt_threads = numProcessors; + } + /* set default opt_minseqlength depending on command */ + + if (opt_minseqlength == 0) + { + if (opt_cluster_smallmem || opt_cluster_fast || opt_cluster_size || + opt_usearch_global || opt_derep_fulllength || opt_derep_prefix ) + opt_minseqlength = 32; + else + opt_minseqlength = 1; + } +} + + +void cmd_help() +{ + /* 0 1 2 3 4 5 6 7 */ + /* 01234567890123456789012345678901234567890123456789012345678901234567890123456789 */ + + if (! opt_quiet) + { + fprintf(stdout, + "Usage: %s [OPTIONS]\n", progname); + + fprintf(stdout, + "\n" + "General options\n" + " --fasta_width INT width of FASTA seq lines, 0 for no wrap (80)\n" + " --help | --h display help information\n" + " --log FILENAME write messages, timing and memory info to file\n" + " --maxseqlength INT maximum sequence length (50000)\n" + " --minseqlength INT min seq length (clust/derep/search: 32, other:1)\n" + " --notrunclabels do not truncate labels at first space\n" + " --quiet output just warnings and fatal errors to stderr\n" + " --threads INT number of threads to use, zero for all cores (0)\n" + " --version display version information\n" + "\n" + "Chimera detection\n" + " --uchime_denovo FILENAME detect chimeras de novo\n" + " --uchime_ref FILENAME detect chimeras using a reference database\n" + "Options\n" + " --abskew REAL min abundance ratio of parent vs chimera (2.0)\n" + " --alignwidth INT width of alignment in uchimealn output (80)\n" + " --borderline FILENAME output borderline chimeric sequences to file\n" + " --chimeras FILENAME output chimeric sequences to file\n" + " --db FILENAME reference database for --uchime_ref\n" + " --dn REAL 'no' vote pseudo-count (1.4)\n" + " --mindiffs INT minimum number of differences in segment (3)\n" + " --mindiv REAL minimum divergence from closest parent (0.8)\n" + " --minh REAL minimum score (0.28)\n" + " --nonchimeras FILENAME output non-chimeric sequences to file\n" + " --relabel STRING relabel nonchimeras with this prefix string\n" + " --relabel_keep keep the old label after the new when relabelling\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --self exclude identical labels for --uchime_ref\n" + " --selfid exclude identical sequences for --uchime_ref\n" + " --sizeout include abundance information when relabelling\n" + " --uchimealns FILENAME output chimera alignments to file\n" + " --uchimeout FILENAME output to chimera info to tab-separated file\n" + " --uchimeout5 make output compatible with uchime version 5\n" + " --xn REAL 'no' vote weight (8.0)\n" + " --xsize strip abundance information in output\n" + "\n" + "Clustering\n" + " --cluster_fast FILENAME cluster sequences after sorting by length\n" + " --cluster_size FILENAME cluster sequences after sorting by abundance\n" + " --cluster_smallmem FILENAME cluster already sorted sequences (see -usersort)\n" + "Options (most searching options also apply)\n" + " --centroids FILENAME output centroid sequences to FASTA file\n" + " --clusterout_id add cluster id info to consout and profile files\n" + " --clusterout_sort order msaout, consout, profile by decr abundance\n" + " --clusters STRING output each cluster to a separate FASTA file\n" + " --consout FILENAME output cluster consensus sequences to FASTA file\n" + " --cons_truncate do not ignore terminal gaps in MSA for consensus\n" + " --id REAL reject if identity lower\n" + " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" + " --msaout FILENAME output multiple seq. alignments to FASTA file\n" + " --profile FILENAME output sequence profile of each cluster to file\n" + " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" + " --relabel STRING relabel centroids with this prefix string\n" + " --relabel_keep keep the old label after the new when relabelling\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sizein propagate abundance annotation from input\n" + " --sizeorder sort accepted centroids by abundance (AGC)\n" + " --sizeout write cluster abundances to centroid file\n" + " --strand plus|both cluster using plus or both strands (plus)\n" + " --uc FILENAME specify filename for UCLUST-like output\n" + " --usersort indicate sequences not pre-sorted by length\n" + " --xsize strip abundance information in output\n" + "\n" + "Dereplication\n" + " --derep_fulllength FILENAME dereplicate sequences in the given FASTA file\n" + " --derep_prefix FILENAME dereplicate sequences in file based on prefixes\n" + "Options\n" + " --maxuniquesize INT maximum abundance for output from dereplication\n" + " --minuniquesize INT minimum abundance for output from dereplication\n" + " --output FILENAME output FASTA file\n" + " --relabel STRING relabel with this prefix string after derep.\n" + " --relabel_keep keep the old label after the new when relabelling\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sizein propagate abundance annotation from input\n" + " --sizeout write abundance annotation to output\n" + " --strand plus|both dereplicate plus or both strands (plus)\n" + " --topn INT output just the n most abundant sequences\n" + " --uc FILENAME filename for UCLUST-like output\n" + " --xsize strip abundance information in output\n" + "\n" + "FASTQ filtering\n" + " --fastq_filter FILENAME filter FASTQ file, output to FASTQ or FASTA file\n" + "Options\n" + " --eeout include expected errors in FASTQ filter output\n" + " --fastaout FILENAME FASTA output filename for passed sequences\n" + " --fastaout_discarded FNAME FASTA filename for discarded sequences\n" + " --fastqout FILENAME FASTQ output filename for passed sequences\n" + " --fastqout_discarded FNAME FASTQ filename for discarded sequences\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_maxee REAL maximum expected error value for FASTQ filter\n" + " --fastq_maxee_rate REAL maximum expected error rate for FASTQ filter\n" + " --fastq_maxns INT maximum number of N's for FASTQ filter\n" + " --fastq_minlen INT minimum length for FASTQ filter\n" + " --fastq_stripleft INT bases on the left to delete for FASTQ filter\n" + " --fastq_trunclen INT read length for FASTQ filter truncation\n" + " --fastq_truncqual INT base quality value for FASTQ filter truncation\n" + " --relabel STRING relabel filtered sequences with given prefix\n" + " --relabel_keep keep the old label after the new when relabelling\n" + " --relabel_md5 relabel filtered sequences with md5 digest\n" + " --relabel_sha1 relabel filtered sequences with sha1 digest\n" + " --sizeout include abundance information when relabelling\n" + " --xsize strip abundance information in output\n" + "\n" + "FASTQ format conversion\n" + " --fastq_convert FILENAME convert between FASTQ file formats\n" + "Options\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_asciiout INT FASTQ output quality score ASCII base char (33)\n" + " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" + " --fastq_qmaxout INT maximum base quality value for FASTQ output (41)\n" + " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" + " --fastq_qminout INT minimum base quality value for FASTQ output (0)\n" + "\n" + "FASTQ format detection and quality analysis\n" + " --fastq_chars FILENAME analyse FASTQ file for version and quality range\n" + "Options\n" + " --fastq_tail INT min length of tails to count for fastq_chars (4)\n" + "\n" + "FASTQ paired-end reads merging\n" + " --fastq_mergepairs FILENAME merge paired-end reads into one sequence\n" + "Options:\n" + " --eetabbedout FILENAME output error statistics to specified file\n" + " --fastaout FILENAME FASTA output filename for merged sequences\n" + " --fastaout_notmerged_fwd FN FASTA filename for non-merged forward sequences\n" + " --fastaout_notmerged_rev FN FASTA filename for non-merged reverse sequences\n" + " --fastq_allowmergestagger Allow merging of staggered reads\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_eeout include expected errors in FASTQ output\n" + " --fastq_maxdiffs maximum number of different bases in overlap\n" + " --fastq_maxee REAL maximum expected error value for merged sequence\n" + " --fastq_maxmergelen maximum length of entire merged sequence\n" + " --fastq_maxns INT maximum number of N's\n" + " --fastq_minlen INT minimum input read length after truncation (1)\n" + " --fastq_minmergelen minimum length of entire merged sequence\n" + " --fastq_minovlen minimum length of overlap between reads\n" + " --fastq_nostagger disallow merging of staggered reads (default)\n" + " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" + " --fastq_qmaxout INT maximum base quality value for FASTQ output (41)\n" + " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" + " --fastq_qminout INT minimum base quality value for FASTQ output (0)\n" + " --fastq_truncqual INT base quality value for truncation\n" + " --fastqout FILENAME FASTQ output filename for merged sequences\n" + " --fastqout_notmerged_fwd F FASTQ filename for non-merged forward sequences\n" + " --fastqout_notmerged_rev F FASTQ filename for non-merged reverse sequences\n" + " --label_suffix suffix to append to label of merged sequences\n" + " --reverse FILENAME specify FASTQ file with reverse reads\n" + "\n" + "FASTQ quality statistics\n" + " --fastq_stats FILENAME report FASTQ file statistics\n" + "Options\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" + " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" + "\n" + "Masking (new)\n" + " --fastx_mask FILENAME mask sequences in the given FASTA or FASTQ file\n" + "Options\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" + " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" + " --fastaout FILENAME output to specified FASTA file\n" + " --fastqout FILENAME output to specified FASTQ file\n" + " --hardmask mask by replacing with N instead of lower case\n" + " --max_unmasked_pct max unmasked %% of sequences to keep (100.0)\n" + " --min_unmasked_pct min unmasked %% of sequences to keep (0.0)\n" + " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" + "\n" + "Masking (old)\n" + " --maskfasta FILENAME mask sequences in the given FASTA file\n" + "Options\n" + " --hardmask mask by replacing with N instead of lower case\n" + " --output FILENAME output to specified FASTA file\n" + " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" + "\n" + "Pairwise alignment\n" + " --allpairs_global FILENAME perform global alignment of all sequence pairs\n" + "Options (most searching options also apply)\n" + " --alnout FILENAME filename for human-readable alignment output\n" + " --acceptall output all pairwise alignments\n" + "\n" + "Reverse complementation\n" + " --fastx_revcomp FILENAME Reverse-complement seqs in FASTA or FASTQ file\n" + "Options\n" + " --fastaout FILENAME FASTA output filename\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" + " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" + " --fastqout FILENAME FASTQ output filename\n" + " --label_suffix STRING Label to append to identifier in the output\n" + "\n" + "Searching\n" + " --search_exact FILENAME filename of queries for exact match search\n" + " --usearch_global FILENAME filename of queries for global alignment search\n" + "Options\n" + " --alnout FILENAME filename for human-readable alignment output\n" + " --blast6out FILENAME filename for blast-like tab-separated output\n" + " --db FILENAME filename for FASTA formatted database for search\n" + " --dbmask none|dust|soft mask db with dust, soft or no method (dust)\n" + " --dbmatched FILENAME FASTA file for matching database sequences\n" + " --dbnotmatched FILENAME FASTA file for non-matching database sequences\n" + " --fastapairs FILENAME FASTA file with pairs of query and target\n" + " --fulldp full dynamic programming alignment (always on)\n" + " --gapext STRING penalties for gap extension (2I/1E)\n" + " --gapopen STRING penalties for gap opening (20I/2E)\n" + " --hardmask mask by replacing with N instead of lower case\n" + " --id REAL reject if identity lower\n" + " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" + " --idprefix INT reject if first n nucleotides do not match\n" + " --idsuffix INT reject if last n nucleotides do not match\n" + " --leftjust reject if terminal gaps at alignment left end\n" + " --match INT score for match (2)\n" + " --matched FILENAME FASTA file for matching query sequences\n" + " --maxaccepts INT number of hits to accept and show per strand (1)\n" + " --maxdiffs INT reject if more substitutions or indels\n" + " --maxgaps INT reject if more indels\n" + " --maxhits INT maximum number of hits to show (unlimited)\n" + " --maxid REAL reject if identity higher\n" + " --maxqsize INT reject if query abundance larger\n" + " --maxqt REAL reject if query/target length ratio higher\n" + " --maxrejects INT number of non-matching hits to consider (32)\n" + " --maxsizeratio REAL reject if query/target abundance ratio higher\n" + " --maxsl REAL reject if shorter/longer length ratio higher\n" + " --maxsubs INT reject if more substitutions\n" + " --mid REAL reject if percent identity lower, ignoring gaps\n" + " --mincols INT reject if alignment length shorter\n" + " --minqt REAL reject if query/target length ratio lower\n" + " --minsizeratio REAL reject if query/target abundance ratio lower\n" + " --minsl REAL reject if shorter/longer length ratio lower\n" + " --mintsize INT reject if target abundance lower\n" + " --minwordmatches INT minimum number of word matches required (10)\n" + " --mismatch INT score for mismatch (-4)\n" + " --notmatched FILENAME FASTA file for non-matching query sequences\n" + " --output_no_hits output non-matching queries to output files\n" + " --pattern STRING option is ignored\n" + " --qmask none|dust|soft mask query with dust, soft or no method (dust)\n" + " --query_cov REAL reject if fraction of query seq. aligned lower\n" + " --rightjust reject if terminal gaps at alignment right end\n" + " --rowlen INT width of alignment lines in alnout output (64)\n" + " --samheader include a header in the SAM output file\n" + " --samout FILENAME filename for SAM format output\n" + " --self reject if labels identical\n" + " --selfid reject if sequences identical\n" + " --sizeout write abundance annotation to dbmatched file\n" + " --slots INT option is ignored\n" + " --strand plus|both search plus or both strands (plus)\n" + " --target_cov REAL reject if fraction of target seq. aligned lower\n" + " --top_hits_only output only hits with identity equal to the best\n" + " --uc FILENAME filename for UCLUST-like output\n" + " --uc_allhits show all, not just top hit with uc output\n" + " --userfields STRING fields to output in userout file\n" + " --userout FILENAME filename for user-defined tab-separated output\n" + " --weak_id REAL include aligned hits with >= id; continue search\n" + " --wordlength INT length of words for database index 3-15 (8)\n" + "\n" + "Shuffling and sorting\n" + " --shuffle FILENAME shuffle order of sequences in FASTA file randomly\n" + " --sortbylength FILENAME sort sequences by length in given FASTA file\n" + " --sortbysize FILENAME abundance sort sequences in given FASTA file\n" + "Options\n" + " --maxsize INT maximum abundance for sortbysize\n" + " --minsize INT minimum abundance for sortbysize\n" + " --output FILENAME output to specified FASTA file\n" + " --randseed INT seed for PRNG, zero to use random data source (0)\n" + " --relabel STRING relabel sequences with this prefix string\n" + " --relabel_keep keep the old label after the new when relabelling\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sizeout include abundance information when relabelling\n" + " --topn INT output just first n sequences\n" + " --xsize strip abundance information in output\n" + "\n" + "Subsampling\n" + " --fastx_subsample FILENAME subsample sequences from given FASTA/FASTQ file\n" + "Options\n" + " --fastaout FILENAME output FASTA file for subsamples\n" + " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" + " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" + " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" + " --fastqout FILENAME output FASTQ file for subsamples\n" + " --randseed INT seed for PRNG, zero to use random data source (0)\n" + " --relabel STRING relabel sequences with this prefix string\n" + " --relabel_keep keep the old label after the new when relabelling\n" + " --relabel_md5 relabel with md5 digest of normalized sequence\n" + " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" + " --sample_pct REAL sampling percentage between 0.0 and 100.0\n" + " --sample_size INT sampling size\n" + " --sizein consider abundance info from input, do not ignore\n" + " --sizeout update abundance information in output\n" + " --xsize strip abundance information in output\n" + ); + } +} + +void cmd_allpairs_global() +{ + /* check options */ + + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_samout)) + fatal("No output files specified"); + + if (! (opt_acceptall || ((opt_id >= 0.0) && (opt_id <= 1.0)))) + fatal("Specify either --acceptall or --id with an identity from 0.0 to 1.0"); + + allpairs_global(cmdline, progheader); +} + +void cmd_usearch_global() +{ + /* check options */ + + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_dbmatched) && (!opt_dbnotmatched) && + (!opt_samout)) + fatal("No output files specified"); + + if (!opt_db) + fatal("Database filename not specified with --db"); + + if ((opt_id < 0.0) || (opt_id > 1.0)) + fatal("Identity between 0.0 and 1.0 must be specified with --id"); + + usearch_global(cmdline, progheader); +} + +void cmd_search_exact() +{ + /* check options */ + + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_dbmatched) && (!opt_dbnotmatched) && + (!opt_samout)) + fatal("No output files specified"); + + if (!opt_db) + fatal("Database filename not specified with --db"); + + search_exact(cmdline, progheader); +} + +void cmd_sortbysize() +{ + if (!opt_output) + fatal("FASTA output file for sortbysize must be specified with --output"); + + sortbysize(); +} + +void cmd_sortbylength() +{ + if (!opt_output) + fatal("FASTA output file for sortbylength must be specified with --output"); + + sortbylength(); +} + +void cmd_derep() +{ + if ((!opt_output) && (!opt_uc)) + fatal("Output file for derepl_fulllength must be specified with --output or --uc"); + + if (opt_derep_fulllength) + derep_fulllength(); + else + { + if (opt_strand > 1) + fatal("Option '--strand both' not supported with --derep_prefix"); + else + derep_prefix(); + } +} + +void cmd_shuffle() +{ + if (!opt_output) + fatal("Output file for shuffling must be specified with --output"); + + shuffle(); +} + +void cmd_subsample() +{ + if ((!opt_fastaout) && (!opt_fastqout)) + fatal("Specifiy output files for subsampling with --fastaout and/or --fastqout"); + + if ((opt_sample_pct > 0) == (opt_sample_size > 0)) + fatal("Specify either --sample_pct or --sample_size, not both"); + + subsample(); +} + +void cmd_maskfasta() +{ + if (!opt_output) + fatal("Output file for masking must be specified with --output"); + + maskfasta(); +} + +void cmd_fastx_mask() +{ + if ((!opt_fastaout) && (!opt_fastqout)) + fatal("Specifiy output files for masking with --fastaout and/or --fastqout"); + + fastx_mask(); +} + +void cmd_none() +{ + if (! opt_quiet) + fprintf(stderr, + "For help, please enter: %s --help\n" + "\n" + "For further details, please see the manual by entering: man vsearch\n" + "\n" + "Example commands:\n" + "\n" + "vsearch --allpairs_global FILENAME --id 0.5 --alnout FILENAME\n" + "vsearch --cluster_fast FILENAME --id 0.97 --centroids FILENAME\n" + "vsearch --cluster_size FILENAME --id 0.97 --centroids FILENAME\n" + "vsearch --cluster_smallmem FILENAME --usersort --id 0.97 --centroids FILENAME\n" + "vsearch --derep_fulllength FILENAME --output FILENAME\n" + "vsearch --derep_prefix FILENAME --output FILENAME\n" + "vsearch --fastq_chars FILENAME\n" + "vsearch --fastq_convert FILENAME --fastqout FILENAME --fastq_ascii 64\n" + "vsearch --fastq_filter FILENAME --fastqout FILENAME --fastq_truncqual 20\n" + "vsearch --fastq_mergepairs FILENAME --reverse FILENAME --fastqout FILENAME\n" + "vsearch --fastq_stats FILENAME --log FILENAME\n" + "vsearch --fastx_mask FILENAME --fastaout FILENAME\n" + "vsearch --fastx_revcomp FILENAME --fastqout FILENAME\n" + "vsearch --fastx_subsample FILENAME --fastaout FILENAME --sample_pct 1\n" + "vsearch --search_exact FILENAME --db FILENAME --alnout FILENAME\n" + "vsearch --shuffle FILENAME --output FILENAME\n" + "vsearch --sortbylength FILENAME --output FILENAME\n" + "vsearch --sortbysize FILENAME --output FILENAME\n" + "vsearch --uchime_denovo FILENAME --nonchimeras FILENAME\n" + "vsearch --uchime_ref FILENAME --db FILENAME --nonchimeras FILENAME\n" + "vsearch --usearch_global FILENAME --db FILENAME --id 0.97 --alnout FILENAME\n" + "\n", + progname); +} + +void cmd_fastx_revcomp() +{ + if ((!opt_fastaout) && (!opt_fastqout)) + fatal("No output files specified"); + + fastx_revcomp(); +} + +void cmd_fastq_convert() +{ + if (! opt_fastqout) + fatal("No output file specified with --fastqout"); + + fastq_convert(); +} + +void cmd_cluster() +{ + if ((!opt_alnout) && (!opt_userout) && + (!opt_uc) && (!opt_blast6out) && + (!opt_matched) && (!opt_notmatched) && + (!opt_centroids) && (!opt_clusters) && + (!opt_consout) && (!opt_msaout) && + (!opt_samout) && (!opt_profile)) + fatal("No output files specified"); + + if ((opt_id < 0.0) || (opt_id > 1.0)) + fatal("Identity between 0.0 and 1.0 must be specified with --id"); + + if (opt_cluster_fast) + cluster_fast(cmdline, progheader); + else if (opt_cluster_smallmem) + cluster_smallmem(cmdline, progheader); + else if (opt_cluster_size) + cluster_size(cmdline, progheader); +} + +void cmd_uchime() +{ + if ((!opt_chimeras) && (!opt_nonchimeras) && + (!opt_uchimeout) && (!opt_uchimealns)) + fatal("No output files specified"); + + if (opt_uchime_ref && ! opt_db) + fatal("Database filename not specified with --db"); + + if (opt_xn <= 1.0) + fatal("Argument to --xn must be > 1"); + + if (opt_dn <= 0.0) + fatal("Argument to --dn must be > 0"); + + if (opt_mindiffs <= 0) + fatal("Argument to --mindiffs must be > 0"); + + if (opt_mindiv <= 0.0) + fatal("Argument to --mindiv must be > 0"); + + if (opt_minh <= 0.0) + fatal("Argument to --minh must be > 0"); + + if (opt_abskew <= 1.0) + fatal("Argument to --abskew must be > 1"); + + chimera(); +} + +void cmd_fastq_filter() +{ + if ((!opt_fastqout) && (!opt_fastaout) && + (!opt_fastqout_discarded) && (!opt_fastaout_discarded)) + fatal("No output files specified"); + fastq_filter(); +} + +void cmd_fastq_mergepairs() +{ + if (!opt_reverse) + fatal("No reverse reads file specified with --reverse"); + if ((!opt_fastqout) && + (!opt_fastaout) && + (!opt_fastqout_notmerged_fwd) && + (!opt_fastqout_notmerged_rev) && + (!opt_fastaout_notmerged_fwd) && + (!opt_fastaout_notmerged_rev) && + (!opt_eetabbedout)) + fatal("No output files specified"); + fastq_mergepairs(); +} + +void fillheader() +{ + int numProcessors = 1; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + numProcessors = sysconf(_SC_NPROCESSORS_ONLN) +#else + SYSTEM_INFO sysinfo; + GetSystemInfo(&sysinfo); + numProcessors = sysinfo.dwNumberOfProcessors; +#endif + + snprintf(progheader, 80, + "%s v%s_%s, %.1fGB RAM, %ld cores", + PROG_NAME, PROG_VERSION, PROG_ARCH, + arch_get_memtotal() / 1024.0 / 1024.0 / 1024.0, + numProcessors); +} + +void getentirecommandline(int argc, char** argv) +{ + int len = 0; + for (int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ -#ifndef VSEARCH_H -#define VSEARCH_H - -#include -#include -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - #include -#endif -//#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - - -#include "getopt_long.h" -#include "cityhash/city.h" -#include "md5.h" -#include "sha1.h" -#include "util.h" -#include "xstring.h" -#include "align_simd.h" -#include "maps.h" -#include "arch.h" -#include "abundance.h" -#include "db.h" -#include "align.h" -#include "unique.h" -#include "bitmap.h" -#include "dbindex.h" -#include "minheap.h" -#include "search.h" -#include "linmemalign.h" -#include "searchcore.h" -#include "showalign.h" -#include "userfields.h" -#include "results.h" -#include "sortbysize.h" -#include "sortbylength.h" -#include "derep.h" -#include "shuffle.h" -#include "mask.h" -#include "cluster.h" -#include "msa.h" -#include "chimera.h" -#include "cpu.h" -#include "allpairs.h" -#include "subsample.h" -#include "fasta.h" -#include "fastq.h" -#include "fastqops.h" -#include "fastxdetect.h" - - -//vsearch definitions - -#define PROG_NAME "vsearch" //PACKAGE -#define PROG_VERSION "1.9.7" //PACKAGE_VERSION -/* Define to the address where bug reports for this package should be sent. */ -#define PACKAGE_BUGREPORT "torognes@ifi.uio.no" - - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - #include - #include - #include - #include - #include - - -/* Define to 1 if you have the header file. */ -#define HAVE_SYS_STAT_H 1 - -/* Define to 1 if you have the header file. */ -#define HAVE_SYS_TIME_H 1 - -/* Define to 1 if you have the header file. */ -#define HAVE_SYS_TYPES_H 1 - -/* Define to 1 if you have the header file. */ -#define HAVE_UNISTD_H 1 - - - #if defined (__APPLE__) || (__MACH__) - #define PROG_ARCH "osx_x86_64" - #include - #else - #define PROG_ARCH "linux_x86_64" - #include - #endif -#else - #define PROG_ARCH "Windows_x86_64" - #include - #include -#endif - - -/* options */ - -extern bool opt_clusterout_id; -extern bool opt_clusterout_sort; -extern bool opt_eeout; -extern bool opt_quiet; -extern bool opt_relabel_md5; -extern bool opt_relabel_sha1; -extern bool opt_samheader; -extern bool opt_sizeorder; -extern bool opt_xsize; -extern char * opt_allpairs_global; -extern char * opt_alnout; -extern char * opt_blast6out; -extern char * opt_borderline; -extern char * opt_centroids; -extern char * opt_chimeras; -extern char * opt_cluster_fast; -extern char * opt_cluster_size; -extern char * opt_cluster_smallmem; -extern char * opt_clusters; -extern char * opt_consout; -extern char * opt_db; -extern char * opt_dbmatched; -extern char * opt_dbnotmatched; -extern char * opt_derep_fulllength; -extern char * opt_derep_prefix; -extern char * opt_fastaout; -extern char * opt_fastaout_discarded; -extern char * opt_fastapairs; -extern char * opt_fastq_chars; -extern char * opt_fastq_filter; -extern char * opt_fastq_stats; -extern char * opt_fastqout; -extern char * opt_fastqout_discarded; -extern char * opt_fastx_revcomp; -extern char * opt_fastx_subsample; -extern char * opt_label_suffix; -extern char * opt_log; -extern char * opt_maskfasta; -extern char * opt_matched; -extern char * opt_msaout; -extern char * opt_nonchimeras; -extern char * opt_notmatched; -extern char * opt_output; -extern char * opt_pattern; -extern char * opt_profile; -extern char * opt_relabel; -extern char * opt_samout; -extern char * opt_shuffle; -extern char * opt_sortbylength; -extern char * opt_sortbysize; -extern char * opt_uc; -extern char * opt_uchime_denovo; -extern char * opt_uchime_ref; -extern char * opt_uchimealns; -extern char * opt_uchimeout; -extern char * opt_usearch_global; -extern char * opt_userout; -extern double opt_abskew; -extern double opt_dn; -extern double opt_fastq_maxee; -extern double opt_fastq_maxee_rate; -extern double opt_id; -extern double opt_maxid; -extern double opt_maxqt; -extern double opt_maxsizeratio; -extern double opt_maxsl; -extern double opt_mid; -extern double opt_mindiv; -extern double opt_minh; -extern double opt_minqt; -extern double opt_minsizeratio; -extern double opt_minsl; -extern double opt_query_cov; -extern double opt_sample_pct; -extern double opt_target_cov; -extern double opt_weak_id; -extern double opt_xn; -extern int opt_acceptall; -extern int opt_alignwidth; -extern int opt_cons_truncate; -extern int opt_gap_extension_query_interior; -extern int opt_gap_extension_query_left; -extern int opt_gap_extension_query_right; -extern int opt_gap_extension_target_interior; -extern int opt_gap_extension_target_left; -extern int opt_gap_extension_target_right; -extern int opt_gap_open_query_interior; -extern int opt_gap_open_query_left; -extern int opt_gap_open_query_right; -extern int opt_gap_open_target_interior; -extern int opt_gap_open_target_left; -extern int opt_gap_open_target_right; -extern int opt_help; -extern int opt_mindiffs; -extern int opt_slots; -extern int opt_uchimeout5; -extern int opt_usersort; -extern int opt_version; -extern long opt_dbmask; -extern long opt_fasta_width; -extern long opt_fastq_ascii; -extern long opt_fastq_maxns; -extern long opt_fastq_minlen; -extern long opt_fastq_qmax; -extern long opt_fastq_qmaxout; -extern long opt_fastq_qmin; -extern long opt_fastq_stripleft; -extern long opt_fastq_tail; -extern long opt_fastq_trunclen; -extern long opt_fastq_truncqual; -extern long opt_fulldp; -extern long opt_hardmask; -extern long opt_iddef; -extern long opt_idprefix; -extern long opt_idsuffix; -extern long opt_leftjust; -extern long opt_match; -extern long opt_maxaccepts; -extern long opt_maxdiffs; -extern long opt_maxgaps; -extern long opt_maxhits; -extern long opt_maxqsize; -extern long opt_maxrejects; -extern long opt_maxseqlength; -extern long opt_maxsize; -extern long opt_maxsubs; -extern long opt_maxuniquesize; -extern long opt_mincols; -extern long opt_minseqlength; -extern long opt_minsize; -extern long opt_mintsize; -extern long opt_minuniquesize; -extern long opt_mismatch; -extern long opt_notrunclabels; -extern long opt_output_no_hits; -extern long opt_qmask; -extern long opt_randseed; -extern long opt_rightjust; -extern long opt_rowlen; -extern long opt_sample_size; -extern long opt_self; -extern long opt_selfid; -extern long opt_sizein; -extern long opt_sizeout; -extern long opt_strand; -extern long opt_threads; -extern long opt_top_hits_only; -extern long opt_topn; -extern long opt_uc_allhits; -extern long opt_wordlength; - -extern long mmx_present; -extern long sse_present; -extern long sse2_present; -extern long sse3_present; -extern long ssse3_present; -extern long sse41_present; -extern long sse42_present; -extern long popcnt_present; -extern long avx_present; -extern long avx2_present; - -extern FILE * fp_log; - -/* main function prototype */ -int vsearch_main(int, char**); - -#endif - - - +/* + + VSEARCH: a versatile open source tool for metagenomics + + Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri + All rights reserved. + + Contact: Torbjorn Rognes , + Department of Informatics, University of Oslo, + PO Box 1080 Blindern, NO-0316 Oslo, Norway + + This software is dual-licensed and available under a choice + of one of two licenses, either under the terms of the GNU + General Public License version 3 or the BSD 2-Clause License. + + + GNU General Public License version 3 + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + + The BSD 2-Clause License + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + 1. Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS + FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, + BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN + ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + +*/ +#include +#include +#include +#include +#include +#include + + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + + +#ifdef HAVE_CONFIG_H +#include "config.h" +#endif + +#ifdef __SSE2__ +#include +#endif + +#ifdef __SSSE3__ +#include +#define SSSE3 +#endif + +#ifdef HAVE_ZLIB_H +#include +#endif + +#ifdef HAVE_BZLIB_H +#include +#endif + +#include "dynlibs.h" +#include "city.h" +#include "citycrc.h" +#include "md5.h" +#include "sha1.h" +#include "util.h" +#include "xstring.h" +#include "align_simd.h" +#include "maps.h" +#include "arch.h" +#include "abundance.h" +#include "db.h" +#include "align.h" +#include "unique.h" +#include "bitmap.h" +#include "dbindex.h" +#include "minheap.h" +#include "search.h" +#include "linmemalign.h" +#include "searchcore.h" +#include "showalign.h" +#include "userfields.h" +#include "results.h" +#include "sortbysize.h" +#include "sortbylength.h" +#include "derep.h" +#include "shuffle.h" +#include "mask.h" +#include "cluster.h" +#include "msa.h" +#include "chimera.h" +#include "cpu.h" +#include "allpairs.h" +#include "subsample.h" +#include "fasta.h" +#include "fastq.h" +#include "fastx.h" +#include "fastqops.h" +#include "dbhash.h" +#include "searchexact.h" +#include "mergepairs.h" + +//vsearch definitions + +#define PROG_NAME "vsearch" //PACKAGE +#define PROG_VERSION "1.9.10" //PACKAGE_VERSION +/* Define to the address where bug reports for this package should be sent. */ +#define PACKAGE_BUGREPORT "torognes@ifi.uio.no" + + +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + +#include +#include +#include +#include +#include +#include +#include +#include + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_STAT_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_TIME_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_SYS_TYPES_H 1 + +/* Define to 1 if you have the header file. */ +#define HAVE_UNISTD_H 1 + + +#if defined (__APPLE__) || (__MACH__) +#define PROG_ARCH "osx_x86_64" +#include +#else +#define PROG_ARCH "linux_x86_64" +#include +#endif +#else +#define PROG_ARCH "Windows_x86_64" +#include +#include +#include +#endif + + + +/* options */ + +extern bool opt_clusterout_id; +extern bool opt_clusterout_sort; +extern bool opt_eeout; +extern bool opt_fastq_allowmergestagger; +extern bool opt_fastq_eeout; +extern bool opt_fastq_nostagger; +extern bool opt_quiet; +extern bool opt_relabel_keep; +extern bool opt_relabel_md5; +extern bool opt_relabel_sha1; +extern bool opt_samheader; +extern bool opt_sizeorder; +extern bool opt_xsize; +extern char * opt_allpairs_global; +extern char * opt_alnout; +extern char * opt_blast6out; +extern char * opt_borderline; +extern char * opt_centroids; +extern char * opt_chimeras; +extern char * opt_cluster_fast; +extern char * opt_cluster_size; +extern char * opt_cluster_smallmem; +extern char * opt_clusters; +extern char * opt_consout; +extern char * opt_db; +extern char * opt_dbmatched; +extern char * opt_dbnotmatched; +extern char * opt_derep_fulllength; +extern char * opt_derep_prefix; +extern char * opt_eetabbedout; +extern char * opt_fastaout_notmerged_fwd; +extern char * opt_fastaout_notmerged_rev; +extern char * opt_fastaout; +extern char * opt_fastaout_discarded; +extern char * opt_fastapairs; +extern char * opt_fastq_chars; +extern char * opt_fastq_convert; +extern char * opt_fastq_filter; +extern char * opt_fastq_mergepairs; +extern char * opt_fastqout_notmerged_fwd; +extern char * opt_fastqout_notmerged_rev; +extern char * opt_fastq_stats; +extern char * opt_fastqout; +extern char * opt_fastqout_discarded; +extern char * opt_fastx_mask; +extern char * opt_fastx_revcomp; +extern char * opt_fastx_subsample; +extern char * opt_label_suffix; +extern char * opt_log; +extern char * opt_maskfasta; +extern char * opt_matched; +extern char * opt_msaout; +extern char * opt_nonchimeras; +extern char * opt_notmatched; +extern char * opt_output; +extern char * opt_pattern; +extern char * opt_profile; +extern char * opt_relabel; +extern char * opt_reverse; +extern char * opt_samout; +extern char * opt_search_exact; +extern char * opt_shuffle; +extern char * opt_sortbylength; +extern char * opt_sortbysize; +extern char * opt_uc; +extern char * opt_uchime_denovo; +extern char * opt_uchime_ref; +extern char * opt_uchimealns; +extern char * opt_uchimeout; +extern char * opt_usearch_global; +extern char * opt_userout; +extern double opt_abskew; +extern double opt_dn; +extern double opt_fastq_maxee; +extern double opt_fastq_maxee_rate; +extern double opt_id; +extern double opt_max_unmasked_pct; +extern double opt_maxid; +extern double opt_maxqt; +extern double opt_maxsizeratio; +extern double opt_maxsl; +extern double opt_mid; +extern double opt_min_unmasked_pct; +extern double opt_mindiv; +extern double opt_minh; +extern double opt_minqt; +extern double opt_minsizeratio; +extern double opt_minsl; +extern double opt_query_cov; +extern double opt_sample_pct; +extern double opt_target_cov; +extern double opt_weak_id; +extern double opt_xn; +extern int opt_acceptall; +extern int opt_alignwidth; +extern int opt_cons_truncate; +extern int opt_gap_extension_query_interior; +extern int opt_gap_extension_query_left; +extern int opt_gap_extension_query_right; +extern int opt_gap_extension_target_interior; +extern int opt_gap_extension_target_left; +extern int opt_gap_extension_target_right; +extern int opt_gap_open_query_interior; +extern int opt_gap_open_query_left; +extern int opt_gap_open_query_right; +extern int opt_gap_open_target_interior; +extern int opt_gap_open_target_left; +extern int opt_gap_open_target_right; +extern int opt_help; +extern int opt_mindiffs; +extern int opt_slots; +extern int opt_uchimeout5; +extern int opt_usersort; +extern int opt_version; +extern long opt_dbmask; +extern long opt_fasta_width; +extern long opt_fastq_ascii; +extern long opt_fastq_asciiout; +extern long opt_fastq_maxdiffs; +extern long opt_fastq_maxmergelen; +extern long opt_fastq_maxns; +extern long opt_fastq_minlen; +extern long opt_fastq_minmergelen; +extern long opt_fastq_minovlen; +extern long opt_fastq_qmax; +extern long opt_fastq_qmaxout; +extern long opt_fastq_qmin; +extern long opt_fastq_qminout; +extern long opt_fastq_stripleft; +extern long opt_fastq_tail; +extern long opt_fastq_trunclen; +extern long opt_fastq_truncqual; +extern long opt_fulldp; +extern long opt_hardmask; +extern long opt_iddef; +extern long opt_idprefix; +extern long opt_idsuffix; +extern long opt_leftjust; +extern long opt_match; +extern long opt_maxaccepts; +extern long opt_maxdiffs; +extern long opt_maxgaps; +extern long opt_maxhits; +extern long opt_maxqsize; +extern long opt_maxrejects; +extern long opt_maxseqlength; +extern long opt_maxsize; +extern long opt_maxsubs; +extern long opt_maxuniquesize; +extern long opt_mincols; +extern long opt_minseqlength; +extern long opt_minsize; +extern long opt_mintsize; +extern long opt_minuniquesize; +extern long opt_minwordmatches; +extern long opt_mismatch; +extern long opt_notrunclabels; +extern long opt_output_no_hits; +extern long opt_qmask; +extern long opt_randseed; +extern long opt_rightjust; +extern long opt_rowlen; +extern long opt_sample_size; +extern long opt_self; +extern long opt_selfid; +extern long opt_sizein; +extern long opt_sizeout; +extern long opt_strand; +extern long opt_threads; +extern long opt_top_hits_only; +extern long opt_topn; +extern long opt_uc_allhits; +extern long opt_wordlength; + +extern long mmx_present; +extern long sse_present; +extern long sse2_present; +extern long sse3_present; +extern long ssse3_present; +extern long sse41_present; +extern long sse42_present; +extern long popcnt_present; +extern long avx_present; +extern long avx2_present; + +extern FILE * fp_log; + +extern abundance_t * global_abundance; diff --git a/source/vsearch_src/vsearchfileparser.cpp b/source/vsearch_src/vsearchfileparser.cpp deleted file mode 100644 index d938fc06..00000000 --- a/source/vsearch_src/vsearchfileparser.cpp +++ /dev/null @@ -1,255 +0,0 @@ -// -// vsearchfileparser.cpp -// Mothur -// -// Created by Sarah Westcott on 10/13/15. -// Copyright (c) 2015 Schloss Lab. All rights reserved. -// - -#include "vsearchfileparser.h" -#include "deconvolutecommand.h" -#include "sequence.hpp" -#include "rabundvector.hpp" -#include "sabundvector.hpp" - -/***********************************************************************/ -VsearchFileParser::VsearchFileParser(string f){ - try { - m = MothurOut::getInstance(); - fastafile = f; - namefile = ""; - countfile = ""; - format = "count"; - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); - exit(1); - } -} -/***********************************************************************/ -VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string forma) { - try { - m = MothurOut::getInstance(); - fastafile = f; - namefile = ""; - countfile = ""; - format = forma; - - if (format == "name") { namefile = nameOrCount; } - else if (format == "count") { countfile = nameOrCount; } - else { m->mothurOut("[ERROR]: " + format + " is not a valid file format for the VsearchFileParser, quitting.\n"); m->control_pressed = true; } - - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); - exit(1); - } -} -/***********************************************************************/ -string VsearchFileParser::getVsearchFile() { - try { - //Run unique.seqs on the data if a name or count file is not given - if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } - else if (namefile != "") { counts = m->readNames(namefile); } - - if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); counts = countTable.getNameMap(); } - - if (m->control_pressed) { return 0; } - - //Remove gap characters from each sequence if needed - //Append the number of sequences that each unique sequence represents to the end of the fasta file name - //Sorts by abundance - string vsearchFastafile = createVsearchFasta(fastafile); - - return vsearchFastafile; - - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "getVsearchFile"); - exit(1); - } -} -/**********************************************************************/ - -string VsearchFileParser::createVsearchFasta(string inputFile){ - try { - string vsearchFasta = m->getSimpleName(fastafile) + ".sorted.fasta.temp"; - - vector seqs; - map::iterator it; - - ifstream in; - m->openInputFile(inputFile, in); - - while (!in.eof()) { - - if (m->control_pressed) { in.close(); return vsearchFasta; } - - Sequence seq(in); m->gobble(in); - - it = counts.find(seq.getName()); - if (it == counts.end()) { - m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name or countfile, quitting.\n"); m->control_pressed = true; - }else { - seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); - seqs.push_back(temp); - } - - } - in.close(); - - m->printVsearchFile(seqs, vsearchFasta); - - return vsearchFasta; - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "createVsearchFasta"); - exit(1); - } -} -/*************************************************************************/ - -string VsearchFileParser::getNamesFile(string& inputFile){ - try { - string nameFile = ""; - - m->mothurOutEndLine(); m->mothurOut("No namesfile given, running unique.seqs command to generate one."); m->mothurOutEndLine(); m->mothurOutEndLine(); - - //use unique.seqs to create new name and fastafile - string inputString = "fasta=" + inputFile + ", format=count"; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); - m->mothurCalling = true; - - Command* uniqueCommand = new DeconvoluteCommand(inputString); - uniqueCommand->execute(); - - map > filenames = uniqueCommand->getOutputFiles(); - - delete uniqueCommand; - m->mothurCalling = false; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - - countfile = filenames["count"][0]; - fastafile = filenames["fasta"][0]; - - return nameFile; - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "getNamesFile"); - exit(1); - } -} -/*************************************************************************/ -//S 1 275 * * * * * GQY1XT001C44N8/ab=3677/ * -int VsearchFileParser::createListFile(string inputFile, string listFile, string sabundFile, string rabundFile, int numBins, string label){ - try { - map::iterator itName; - if (format == "name") { counts.clear(); m->readNames(namefile, nameMap); } - - ifstream in; - m->openInputFile(inputFile, in); - - ListVector list(numBins); list.setLabel(label); - - int clusterNumber; - string seqName, recordType, length, percentIdentity, strand, notUsed1, notUsed2, compressedAlignment, repSequence; - - while(!in.eof()) { - if (m->control_pressed) { break; } - - in >> recordType >> clusterNumber >> length >> percentIdentity >> strand >> notUsed1 >> notUsed2 >> compressedAlignment >> seqName >> repSequence; m->gobble(in); - - seqName = removeAbundances(seqName); - - if (format == "name") { - itName = nameMap.find(seqName); - if (itName == nameMap.end()) { m->mothurOut("[ERROR]: " + seqName + " is not in your name file. Parsing error???\n"); m->control_pressed = true; } - else{ seqName = itName->second; } - } - - string bin = list.get(clusterNumber); - if (bin == "") { bin = seqName; } - else { bin += ',' + seqName; } - list.set(clusterNumber, bin); - - } - in.close(); - - ofstream out; - m->openOutputFile(listFile, out); - list.printHeaders(out); - - if (countfile != "") { - list.print(out, counts); - }else { - list.print(out); - - if ((sabundFile != "") && (rabundFile != "")){ - //print sabund and rabund - ofstream sabund, rabund; - m->openOutputFile(sabundFile, sabund); - m->openOutputFile(rabundFile, rabund); - - list.getRAbundVector().print(rabund); rabund.close(); - list.getSAbundVector().print(sabund); sabund.close(); - } - } - out.close(); - - return 0; - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "createListFile"); - exit(1); - } -} -/*************************************************************************/ -//GQY1XT001C44N8/ab=3677/ * -string VsearchFileParser::removeAbundances(string seqName){ - try { - - int pos = seqName.find_last_of("/", seqName.length()-2); //don't look at the last / - if (pos != string::npos) { seqName = seqName.substr(0, pos); } - - return seqName; - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "removeAbundances"); - exit(1); - } -} -/*************************************************************************/ -//GQY1XT001C44N8/ab=3677/ * -int VsearchFileParser::getNumBins(string logfile){ - try { - - int numBins = 0; - - ifstream in; - m->openInputFile(logfile, in); - - string line; - while(!in.eof()) { - if (m->control_pressed) { break; } - - line = m->getline(in); m->gobble(in); - - int pos = line.find("Clusters:"); - if (pos != string::npos) { - vector pieces = m->splitWhiteSpace(line); - if (pieces.size() > 1) { m->mothurConvert(pieces[1], numBins); } - break; - } - } - in.close(); - - return numBins; - } - catch(exception& e) { - m->errorOut(e, "VsearchFileParser", "getNumBins"); - exit(1); - } -} -/***********************************************************************/ - diff --git a/source/vsearch_src/vsearchfileparser.h b/source/vsearch_src/vsearchfileparser.h deleted file mode 100644 index 551ee454..00000000 --- a/source/vsearch_src/vsearchfileparser.h +++ /dev/null @@ -1,44 +0,0 @@ -// -// vsearchfileparser.h -// Mothur -// -// Created by Sarah Westcott on 10/13/15. -// Copyright (c) 2015 Schloss Lab. All rights reserved. -// - -#ifndef __Mothur__vsearchfileparser__ -#define __Mothur__vsearchfileparser__ - -#include "mothurout.h" - - -/**************************************************************************************************/ - -class VsearchFileParser { - - public: - VsearchFileParser(string f); //fastafile - VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") - ~VsearchFileParser(){} - - string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. - string getCountFile(); //returns count filename. If no names or count file is given, then a count file is generated. - int createListFile(string uc, string listfile, string, string, int numbins, string label); //takes vsearch output and creates list file - int getNumBins(string logfile); - - private: - MothurOut* m; - map nameMap; - map counts; - string fastafile, namefile, countfile, format; - string getNamesFile(string& inputFile); - string createVsearchFasta(string); - string removeAbundances(string seqName); - - -}; - -/**************************************************************************************************/ - - -#endif /* defined(__Mothur__vsearchfileparser__) */ diff --git a/source/vsearch_src/xstring.h b/source/vsearch_src/xstring.h old mode 100644 new mode 100755 From e17a9bd42d12a575b42f4960c99b05aeb8725103 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 8 Feb 2016 11:47:02 -0500 Subject: [PATCH 099/135] Adds debug to make.biom --- source/commands/makebiomcommand.cpp | 2 ++ 1 file changed, 2 insertions(+) diff --git a/source/commands/makebiomcommand.cpp b/source/commands/makebiomcommand.cpp index ba72625d..eb99184b 100644 --- a/source/commands/makebiomcommand.cpp +++ b/source/commands/makebiomcommand.cpp @@ -1405,6 +1405,8 @@ int MakeBiomCommand::getSampleMetaData(vector& lookup){ string line = m->getline(in); m->gobble(in); vector thisPieces = m->splitWhiteSpaceWithQuotes(line); + + if (m->debug) { m->mothurOut("[DEBUG]: " + group + " " + m->getStringFromVector(thisPieces, ", ") + "\n"); } if (thisPieces.size() != count) { m->mothurOut("[ERROR]: expected " + toString(count) + " items of data for sample " + group + " read " + toString(thisPieces.size()) + ", quitting.\n"); } else { if (m->inUsersGroups(group, groups)) { lines[group] = thisPieces; } } From 11e6aa0d23b1a1cbdf0a365e1eab4817cf9cb322 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 8 Feb 2016 16:49:30 -0500 Subject: [PATCH 100/135] Adds agc and dgc methods to cluster command #169 --- Mothur.xcodeproj/project.pbxproj | 327 +-- source/commands/clustercommand.cpp | 151 +- source/commands/clustercommand.h | 2 +- source/mothurout.cpp | 2 +- source/vsearch_src/abundance.cc | 181 -- source/vsearch_src/abundance.h | 85 - source/vsearch_src/align.cc | 464 ---- source/vsearch_src/align.h | 92 - source/vsearch_src/align_simd.cc | 1314 --------- source/vsearch_src/align_simd.h | 97 - source/vsearch_src/allpairs.cc | 680 ----- source/vsearch_src/allpairs.h | 61 - source/vsearch_src/arch.cc | 119 - source/vsearch_src/arch.h | 62 - source/vsearch_src/bitmap.cc | 76 - source/vsearch_src/bitmap.h | 99 - source/vsearch_src/chimera.cc | 1570 ----------- source/vsearch_src/chimera.h | 61 - source/vsearch_src/cityhash/city.cc | 628 ----- source/vsearch_src/cityhash/city.h | 113 - source/vsearch_src/cityhash/citycrc.h | 43 - source/vsearch_src/cluster.cc | 1380 ---------- source/vsearch_src/cluster.h | 63 - source/vsearch_src/cpu.cc | 155 -- source/vsearch_src/cpu.h | 70 - source/vsearch_src/db.cc | 428 --- source/vsearch_src/db.h | 119 - source/vsearch_src/dbindex.cc | 217 -- source/vsearch_src/dbindex.h | 101 - source/vsearch_src/derep.cc | 802 ------ source/vsearch_src/derep.h | 62 - source/vsearch_src/fasta.cc | 713 ----- source/vsearch_src/fasta.h | 144 - source/vsearch_src/fastq.cc | 818 ------ source/vsearch_src/fastq.h | 135 - source/vsearch_src/fastqops.cc | 1014 ------- source/vsearch_src/fastqops.h | 65 - source/vsearch_src/fastxdetect.cc | 224 -- source/vsearch_src/fastxdetect.h | 61 - source/vsearch_src/linmemalign.cc | 708 ----- source/vsearch_src/linmemalign.h | 161 -- source/vsearch_src/maps.cc | 432 --- source/vsearch_src/maps.h | 74 - source/vsearch_src/mask.cc | 379 --- source/vsearch_src/mask.h | 72 - source/vsearch_src/md5.c | 295 -- source/vsearch_src/md5.h | 53 - source/vsearch_src/mergepairs.cc | 812 ------ source/vsearch_src/mergepairs.h | 61 - source/vsearch_src/minheap.cc | 267 -- source/vsearch_src/minheap.h | 92 - source/vsearch_src/msa.cc | 433 --- source/vsearch_src/msa.h | 71 - source/vsearch_src/pvalue.h | 4843 --------------------------------- source/vsearch_src/results.cc | 742 ----- source/vsearch_src/results.h | 107 - source/vsearch_src/search.cc | 678 ----- source/vsearch_src/search.h | 61 - source/vsearch_src/searchcore.cc | 764 ------ source/vsearch_src/searchcore.h | 166 -- source/vsearch_src/searchexact.cc | 717 ----- source/vsearch_src/searchexact.h | 61 - source/vsearch_src/sha1.c | 377 --- source/vsearch_src/sha1.h | 27 - source/vsearch_src/showalign.cc | 306 --- source/vsearch_src/showalign.h | 79 - source/vsearch_src/shuffle.cc | 113 - source/vsearch_src/shuffle.h | 61 - source/vsearch_src/sortbylength.cc | 165 -- source/vsearch_src/sortbylength.h | 61 - source/vsearch_src/sortbysize.cc | 168 -- source/vsearch_src/sortbysize.h | 61 - source/vsearch_src/subsample.cc | 193 -- source/vsearch_src/subsample.h | 61 - source/vsearch_src/unique.cc | 343 --- source/vsearch_src/unique.h | 79 - source/vsearch_src/userfields.cc | 165 -- source/vsearch_src/userfields.h | 64 - source/vsearch_src/util.cc | 434 --- source/vsearch_src/util.h | 111 - source/vsearch_src/vsearch.cc | 2482 ----------------- source/vsearch_src/vsearch.h | 381 --- source/vsearch_src/xstring.h | 143 - source/vsearchfileparser.cpp | 255 ++ source/vsearchfileparser.h | 44 + 85 files changed, 418 insertions(+), 30602 deletions(-) delete mode 100755 source/vsearch_src/abundance.cc delete mode 100755 source/vsearch_src/abundance.h delete mode 100755 source/vsearch_src/align.cc delete mode 100755 source/vsearch_src/align.h delete mode 100755 source/vsearch_src/align_simd.cc delete mode 100755 source/vsearch_src/align_simd.h delete mode 100755 source/vsearch_src/allpairs.cc delete mode 100755 source/vsearch_src/allpairs.h delete mode 100755 source/vsearch_src/arch.cc delete mode 100755 source/vsearch_src/arch.h delete mode 100755 source/vsearch_src/bitmap.cc delete mode 100755 source/vsearch_src/bitmap.h delete mode 100755 source/vsearch_src/chimera.cc delete mode 100755 source/vsearch_src/chimera.h delete mode 100644 source/vsearch_src/cityhash/city.cc delete mode 100644 source/vsearch_src/cityhash/city.h delete mode 100644 source/vsearch_src/cityhash/citycrc.h delete mode 100755 source/vsearch_src/cluster.cc delete mode 100755 source/vsearch_src/cluster.h delete mode 100755 source/vsearch_src/cpu.cc delete mode 100755 source/vsearch_src/cpu.h delete mode 100755 source/vsearch_src/db.cc delete mode 100755 source/vsearch_src/db.h delete mode 100755 source/vsearch_src/dbindex.cc delete mode 100755 source/vsearch_src/dbindex.h delete mode 100755 source/vsearch_src/derep.cc delete mode 100755 source/vsearch_src/derep.h delete mode 100755 source/vsearch_src/fasta.cc delete mode 100755 source/vsearch_src/fasta.h delete mode 100755 source/vsearch_src/fastq.cc delete mode 100755 source/vsearch_src/fastq.h delete mode 100755 source/vsearch_src/fastqops.cc delete mode 100755 source/vsearch_src/fastqops.h delete mode 100755 source/vsearch_src/fastxdetect.cc delete mode 100755 source/vsearch_src/fastxdetect.h delete mode 100755 source/vsearch_src/linmemalign.cc delete mode 100755 source/vsearch_src/linmemalign.h delete mode 100755 source/vsearch_src/maps.cc delete mode 100755 source/vsearch_src/maps.h delete mode 100755 source/vsearch_src/mask.cc delete mode 100755 source/vsearch_src/mask.h delete mode 100755 source/vsearch_src/md5.c delete mode 100755 source/vsearch_src/md5.h delete mode 100755 source/vsearch_src/mergepairs.cc delete mode 100755 source/vsearch_src/mergepairs.h delete mode 100755 source/vsearch_src/minheap.cc delete mode 100755 source/vsearch_src/minheap.h delete mode 100755 source/vsearch_src/msa.cc delete mode 100755 source/vsearch_src/msa.h delete mode 100755 source/vsearch_src/pvalue.h delete mode 100755 source/vsearch_src/results.cc delete mode 100755 source/vsearch_src/results.h delete mode 100755 source/vsearch_src/search.cc delete mode 100755 source/vsearch_src/search.h delete mode 100755 source/vsearch_src/searchcore.cc delete mode 100755 source/vsearch_src/searchcore.h delete mode 100755 source/vsearch_src/searchexact.cc delete mode 100755 source/vsearch_src/searchexact.h delete mode 100755 source/vsearch_src/sha1.c delete mode 100755 source/vsearch_src/sha1.h delete mode 100755 source/vsearch_src/showalign.cc delete mode 100755 source/vsearch_src/showalign.h delete mode 100755 source/vsearch_src/shuffle.cc delete mode 100755 source/vsearch_src/shuffle.h delete mode 100755 source/vsearch_src/sortbylength.cc delete mode 100755 source/vsearch_src/sortbylength.h delete mode 100755 source/vsearch_src/sortbysize.cc delete mode 100755 source/vsearch_src/sortbysize.h delete mode 100755 source/vsearch_src/subsample.cc delete mode 100755 source/vsearch_src/subsample.h delete mode 100755 source/vsearch_src/unique.cc delete mode 100755 source/vsearch_src/unique.h delete mode 100755 source/vsearch_src/userfields.cc delete mode 100755 source/vsearch_src/userfields.h delete mode 100755 source/vsearch_src/util.cc delete mode 100755 source/vsearch_src/util.h delete mode 100755 source/vsearch_src/vsearch.cc delete mode 100755 source/vsearch_src/vsearch.h delete mode 100755 source/vsearch_src/xstring.h create mode 100644 source/vsearchfileparser.cpp create mode 100644 source/vsearchfileparser.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index e4634576..2bb38aa0 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -10,8 +10,6 @@ 2114A7681C654D7400D3D8D9 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; }; 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 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48A52FB11BC428DF00548F6C /* dbindex.cc in Sources */, 481FB5EC1AC1B77E0076CFF3 /* parselistscommand.cpp in Sources */, 481FB5B61AC1B74F0076CFF3 /* filtersharedcommand.cpp in Sources */, 481FB5F81AC1B77E0076CFF3 /* rarefactsharedcommand.cpp in Sources */, @@ -2854,7 +2602,6 @@ 481FB5A61AC1B7300076CFF3 /* clusterfragmentscommand.cpp in Sources */, 481FB5C01AC1B74F0076CFF3 /* getlineagecommand.cpp in Sources */, 481FB5F71AC1B77E0076CFF3 /* rarefactcommand.cpp in Sources */, - 48A52F9D1BC428DF00548F6C /* align_simd.cc in Sources */, 481FB61F1AC1B7AC0076CFF3 /* venncommand.cpp in Sources */, 481FB61A1AC1B7AC0076CFF3 /* treegroupscommand.cpp in Sources */, 481FB66B1AC1B8520076CFF3 /* decisiontree.cpp in Sources */, @@ -2870,18 +2617,13 @@ 481FB6601AC1B8450076CFF3 /* nast.cpp in Sources */, 481FB5861AC1B6FF0076CFF3 /* chimerarealigner.cpp in Sources */, 481FB5A81AC1B7300076CFF3 /* collectcommand.cpp in Sources */, - 48A52FDD1BC428DF00548F6C /* userfields.cc in Sources */, - 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481FB5D51AC1B75C0076CFF3 /* loadlogfilecommand.cpp in Sources */, - 48A52FBF1BC428DF00548F6C /* maps.cc in Sources */, 481FB64B1AC1B7F40076CFF3 /* suffixtree.cpp in Sources */, 481FB5F21AC1B77E0076CFF3 /* phylotypecommand.cpp in Sources */, 481FB6281AC1B7EA0076CFF3 /* blastalign.cpp in Sources */, @@ -2964,7 +2700,6 @@ 481FB6141AC1B7AC0076CFF3 /* subsamplecommand.cpp in Sources */, 481FB5481AC1B61F0076CFF3 /* hellinger.cpp in Sources */, 481FB5CA1AC1B74F0076CFF3 /* hclustercommand.cpp in Sources */, - 48A52FC11BC428DF00548F6C /* mask.cc in Sources */, 481FB5D41AC1B75C0076CFF3 /* listseqscommand.cpp in Sources */, 481FB6521AC1B8100076CFF3 /* fileoutput.cpp in Sources */, 481FB6851AC1B8B80076CFF3 /* validcalculator.cpp in Sources */, @@ -2978,11 +2713,9 @@ 481FB5921AC1B71B0076CFF3 /* anosimcommand.cpp in Sources */, 481FB6201AC1B7B30076CFF3 /* commandoptionparser.cpp in Sources */, 481FB5341AC1B5D60076CFF3 /* dmat.cpp in Sources */, - 48A52FB71BC428DF00548F6C /* fastq.cc in Sources */, 481FB6171AC1B7AC0076CFF3 /* summarysharedcommand.cpp in Sources */, 481FB68C1AC1BA9E0076CFF3 /* bayesian.cpp in Sources */, 481FB5F41AC1B77E0076CFF3 /* preclustercommand.cpp in Sources */, - 48A52FA11BC428DF00548F6C /* allpairs.cc in Sources */, 481FB5911AC1B71B0076CFF3 /* amovacommand.cpp in Sources */, 4829D9671B8387D0002EEED4 /* testbiominfocommand.cpp in Sources */, 481FB58A1AC1B6FF0076CFF3 /* myPerseus.cpp in Sources */, @@ -3001,14 +2734,12 @@ 481FB5C61AC1B74F0076CFF3 /* getrelabundcommand.cpp in Sources */, 481FB6571AC1B8100076CFF3 /* inputdata.cpp in Sources */, 481FB5451AC1B6170076CFF3 /* gower.cpp in Sources */, - 48A52FE11BC428DF00548F6C /* vsearch.cc in Sources */, 481FB5AC1AC1B7300076CFF3 /* corraxescommand.cpp in Sources */, 481FB5A11AC1B71B0076CFF3 /* classifytreecommand.cpp in Sources */, 48C7286A1B69598400D40830 /* testmergegroupscommand.cpp in Sources */, 481FB62F1AC1B7EA0076CFF3 /* fastqread.cpp in Sources */, 481FB6901AC1BA9E0076CFF3 /* knn.cpp in Sources */, 481FB5941AC1B71B0076CFF3 /* catchallcommand.cpp in Sources */, - 48A52FB91BC428DF00548F6C /* fastqops.cc in Sources */, 481FB56C1AC1B6BE0076CFF3 /* sharedsorabund.cpp in Sources */, 481FB6411AC1B7EA0076CFF3 /* sequenceparser.cpp in Sources */, 481FB6381AC1B7EA0076CFF3 /* oligos.cpp in Sources */, @@ -3023,7 +2754,6 @@ 481FB66F1AC1B8520076CFF3 /* regularizedrandomforest.cpp in Sources */, 481FB5361AC1B5DC0076CFF3 /* getopt_long.cpp in Sources */, 481FB5A41AC1B7300076CFF3 /* clustercommand.cpp in Sources */, - 48A52FC71BC428DF00548F6C /* msa.cc in Sources */, 481FB5671AC1B6AD0076CFF3 /* sharedmorisitahorn.cpp in Sources */, 481FB5581AC1B6590076CFF3 /* shannonrange.cpp in Sources */, 481FB5601AC1B6790076CFF3 /* sharedjest.cpp in Sources */, @@ -3048,7 +2778,6 @@ 481FB5971AC1B71B0076CFF3 /* chimeracheckcommand.cpp in Sources */, 481FB5271AC0ADBA0076CFF3 /* mothurout.cpp in Sources */, 481FB54D1AC1B6300076CFF3 /* memchi2.cpp in Sources */, - 48A52FBB1BC428DF00548F6C /* fastxdetect.cc in Sources */, 481FB5E01AC1B77E0076CFF3 /* mergegroupscommand.cpp in Sources */, 481FB56B1AC1B6BB0076CFF3 /* sharedsobscollectsummary.cpp in Sources */, 481FB57F1AC1B6EA0076CFF3 /* uvest.cpp in Sources */, @@ -3060,7 +2789,6 @@ 481FB5E91AC1B77E0076CFF3 /* otuhierarchycommand.cpp in Sources */, 481FB5351AC1B5D90076CFF3 /* fasta.cpp in Sources */, 481FB6321AC1B7EA0076CFF3 /* groupmap.cpp in Sources */, - 48A52FD11BC428DF00548F6C /* showalign.cc in Sources */, 481FB5FF1AC1B7970076CFF3 /* removeseqscommand.cpp in Sources */, 481FB6771AC1B88F0076CFF3 /* readcluster.cpp in Sources */, 481FB5831AC1B6FF0076CFF3 /* ccode.cpp in Sources */, @@ -3110,15 +2838,12 @@ 481FB5EA1AC1B77E0076CFF3 /* pairwiseseqscommand.cpp in Sources */, 481FB63D1AC1B7EA0076CFF3 /* reportfile.cpp in Sources */, 481FB5F11AC1B77E0076CFF3 /* phylodiversitycommand.cpp in Sources */, - 48A52FB51BC428DF00548F6C /* fasta.cc in Sources */, 481FB5501AC1B63D0076CFF3 /* mempearson.cpp in Sources */, 481FB5B51AC1B7300076CFF3 /* filterseqscommand.cpp in Sources */, 481FB6621AC1B8450076CFF3 /* noalign.cpp in Sources */, - 48A52FDB1BC428DF00548F6C /* unique.cc in Sources */, 481FB5E31AC1B77E0076CFF3 /* mgclustercommand.cpp in Sources */, 481FB5491AC1B6220076CFF3 /* invsimpson.cpp in Sources */, 481FB5821AC1B6FF0076CFF3 /* bellerophon.cpp in Sources */, - 48A52FA91BC428DF00548F6C /* city.cc in Sources */, 481FB6731AC1B8820076CFF3 /* seqnoise.cpp in Sources */, 481FB5DC1AC1B75C0076CFF3 /* makelookupcommand.cpp in Sources */, 481FB53D1AC1B5F80076CFF3 /* bstick.cpp in Sources */, @@ -3128,10 +2853,7 @@ 481FB5F51AC1B77E0076CFF3 /* primerdesigncommand.cpp in Sources */, 481FB5B41AC1B7300076CFF3 /* distancecommand.cpp in Sources */, 481FB5391AC1B5E90076CFF3 /* ace.cpp in Sources */, - 48A52FAF1BC428DF00548F6C /* db.cc in Sources */, 481FB5751AC1B6EA0076CFF3 /* soergel.cpp in Sources */, - 48A52FDF1BC428DF00548F6C /* util.cc in Sources */, - 48A52FC31BC428DF00548F6C /* md5.c in Sources */, 481FB5DA1AC1B75C0076CFF3 /* makegroupcommand.cpp in Sources */, 481FB5691AC1B6B50076CFF3 /* sharedrjsd.cpp in Sources */, 481FB6801AC1B8960076CFF3 /* slibshuff.cpp in Sources */, @@ -3147,7 +2869,6 @@ 481FB60F1AC1B7AC0076CFF3 /* sortseqscommand.cpp in Sources */, 481FB67D1AC1B88F0076CFF3 /* treereader.cpp in Sources */, 481FB6131AC1B7AC0076CFF3 /* sracommand.cpp in Sources */, - 48A52FA51BC428DF00548F6C /* bitmap.cc in Sources */, 48C728671B66AB8800D40830 /* pcrseqscommand.cpp in Sources */, 481FB5541AC1B64C0076CFF3 /* prng.cpp in Sources */, 481FB6691AC1B8520076CFF3 /* abstractdecisiontree.cpp in Sources */, @@ -3156,7 +2877,6 @@ 481FB54B1AC1B62A0076CFF3 /* logsd.cpp in Sources */, 481FB55A1AC1B6600076CFF3 /* sharedace.cpp in Sources */, 481FB5BB1AC1B74F0076CFF3 /* getgroupcommand.cpp in Sources */, - 48A52FCF1BC428DF00548F6C /* sha1.c in Sources */, 481FB6361AC1B7EA0076CFF3 /* listvector.cpp in Sources */, 481FB5ED1AC1B77E0076CFF3 /* parsimonycommand.cpp in Sources */, 481FB55F1AC1B6750076CFF3 /* sharedjclass.cpp in Sources */, @@ -3191,15 +2911,12 @@ 481FB5FA1AC1B77E0076CFF3 /* removegroupscommand.cpp in Sources */, 481FB5371AC1B5E00076CFF3 /* cluster.cpp in Sources */, 481FB53B1AC1B5EF0076CFF3 /* boneh.cpp in Sources */, - 48A52F9B1BC428DF00548F6C /* abundance.cc in Sources */, 481FB6441AC1B7EA0076CFF3 /* sharedrabundfloatvector.cpp in Sources */, 481FB6071AC1B7970076CFF3 /* setcurrentcommand.cpp in Sources */, 481FB5321AC1B5D00076CFF3 /* cmdargs.cpp in Sources */, - 48A52FA31BC428DF00548F6C /* arch.cc in Sources */, 481FB6711AC1B8820076CFF3 /* rarefact.cpp in Sources */, 481FB5841AC1B6FF0076CFF3 /* mothurchimera.cpp in Sources */, 481FB6121AC1B7AC0076CFF3 /* splitgroupscommand.cpp in Sources */, - 48A52FD71BC428DF00548F6C /* sortbysize.cc in Sources */, 481FB6921AC1BAA60076CFF3 /* taxonomyequalizer.cpp in Sources */, 481FB68A1AC1BA9E0076CFF3 /* alignnode.cpp in Sources */, 481FB58B1AC1B6FF0076CFF3 /* pintail.cpp in Sources */, @@ -3214,8 +2931,6 @@ 481FB6091AC1B7970076CFF3 /* setlogfilecommand.cpp in Sources */, 481FB5C91AC1B74F0076CFF3 /* getsharedotucommand.cpp in Sources */, 481FB5B11AC1B7300076CFF3 /* degapseqscommand.cpp in Sources */, - 48A52F9F1BC428DF00548F6C /* align.cc in Sources */, - 48A52FA71BC428DF00548F6C /* chimera.cc in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -3223,7 +2938,6 @@ isa = PBXSourcesBuildPhase; buildActionMask = 2147483647; files = ( - 48A52FC01BC428DF00548F6C /* mask.cc in Sources */, A7E9B88112D37EC400DA6239 /* ace.cpp in Sources */, A7E9B88212D37EC400DA6239 /* aligncommand.cpp in Sources */, A7E9B88312D37EC400DA6239 /* alignment.cpp in Sources */, @@ -3231,11 +2945,9 @@ A7E9B88512D37EC400DA6239 /* alignmentdb.cpp in Sources */, A7E9B88712D37EC400DA6239 /* bayesian.cpp in Sources */, A7E9B88812D37EC400DA6239 /* bellerophon.cpp in Sources */, - 48A52FAA1BC428DF00548F6C /* cluster.cc in Sources */, A7E9B88912D37EC400DA6239 /* bergerparker.cpp in Sources */, A7E9B88A12D37EC400DA6239 /* binsequencecommand.cpp in Sources */, A7E9B88B12D37EC400DA6239 /* blastalign.cpp in Sources */, - 48A52FE01BC428DF00548F6C /* vsearch.cc in Sources */, A7E9B88C12D37EC400DA6239 /* blastdb.cpp in Sources */, A7E9B88D12D37EC400DA6239 /* boneh.cpp in Sources */, A7E9B88E12D37EC400DA6239 /* bootstrap.cpp in Sources */, @@ -3255,9 +2967,7 @@ A7E9B89C12D37EC400DA6239 /* chimerarealigner.cpp in Sources */, A7E9B89E12D37EC400DA6239 /* chimeraslayer.cpp in Sources */, A7E9B89F12D37EC400DA6239 /* chimeraslayercommand.cpp in Sources */, - 48A52FB41BC428DF00548F6C /* fasta.cc in Sources */, A7E9B8A012D37EC400DA6239 /* chopseqscommand.cpp in Sources */, - 48A52FBA1BC428DF00548F6C /* fastxdetect.cc in Sources */, A7E9B8A112D37EC400DA6239 /* classify.cpp in Sources */, A7E9B8A212D37EC400DA6239 /* classifyotucommand.cpp in Sources */, A7E9B8A312D37EC400DA6239 /* classifyseqscommand.cpp in Sources */, @@ -3292,23 +3002,18 @@ A7E9B8C112D37EC400DA6239 /* efron.cpp in Sources */, A7E9B8C212D37EC400DA6239 /* engine.cpp in Sources */, A7E9B8C312D37EC400DA6239 /* fasta.cpp in Sources */, - 48A52F9A1BC428DF00548F6C /* abundance.cc in Sources */, A7E9B8C412D37EC400DA6239 /* fastamap.cpp in Sources */, 2114A7681C654D7400D3D8D9 /* averagelinkage.cpp in Sources */, A7E9B8C512D37EC400DA6239 /* fileoutput.cpp in Sources */, A7E9B8C612D37EC400DA6239 /* filterseqscommand.cpp in Sources */, - 48A52FBE1BC428DF00548F6C /* maps.cc in Sources */, A7E9B8C812D37EC400DA6239 /* flowdata.cpp in Sources */, - 48A52FCA1BC428DF00548F6C /* search.cc in Sources */, A7E9B8C912D37EC400DA6239 /* formatcolumn.cpp in Sources */, - 48A52FB21BC428DF00548F6C /* derep.cc in Sources */, A7E9B8CA12D37EC400DA6239 /* formatphylip.cpp in Sources */, A7E9B8CB12D37EC400DA6239 /* fullmatrix.cpp in Sources */, A7E9B8CC12D37EC400DA6239 /* geom.cpp in Sources */, A7E9B8CD12D37EC400DA6239 /* getgroupcommand.cpp in Sources */, A7E9B8CE12D37EC400DA6239 /* getgroupscommand.cpp in Sources */, A7E9B8CF12D37EC400DA6239 /* getlabelcommand.cpp in Sources */, - 48A52FDA1BC428DF00548F6C /* unique.cc in Sources */, A7E9B8D012D37EC400DA6239 /* getlineagecommand.cpp in Sources */, A7E9B8D112D37EC400DA6239 /* getlistcountcommand.cpp in Sources */, A7E9B8D212D37EC400DA6239 /* getopt_long.cpp in Sources */, @@ -3317,18 +3022,15 @@ A7E9B8D612D37EC400DA6239 /* getrelabundcommand.cpp in Sources */, A7E9B8D712D37EC400DA6239 /* getsabundcommand.cpp in Sources */, A7E9B8D812D37EC400DA6239 /* getseqscommand.cpp in Sources */, - 48A52F9C1BC428DF00548F6C /* align_simd.cc in Sources */, A7E9B8D912D37EC400DA6239 /* getsharedotucommand.cpp in Sources */, A7E9B8DB12D37EC400DA6239 /* goodscoverage.cpp in Sources */, A7E9B8DC12D37EC400DA6239 /* gotohoverlap.cpp in Sources */, A7E9B8DD12D37EC400DA6239 /* gower.cpp in Sources */, A7E9B8DE12D37EC400DA6239 /* groupmap.cpp in Sources */, - 48A52FD21BC428DF00548F6C /* shuffle.cc in Sources */, 4893DE2918EEF28100C615DF /* (null) in Sources */, A7E9B8DF12D37EC400DA6239 /* hamming.cpp in Sources */, A7E9B8E012D37EC400DA6239 /* hcluster.cpp in Sources */, A7E9B8E112D37EC400DA6239 /* hclustercommand.cpp in Sources */, - 21C92AB71C67ACC400597EBB /* searchexact.cc in Sources */, A7E9B8E212D37EC400DA6239 /* heatmap.cpp in Sources */, A7E9B8E312D37EC400DA6239 /* heatmapcommand.cpp in Sources */, A7E9B8E412D37EC400DA6239 /* heatmapsim.cpp in Sources */, @@ -3354,12 +3056,10 @@ A7E9B8F512D37EC400DA6239 /* makegroupcommand.cpp in Sources */, 48705AC719BE32C50075E977 /* sharedrjsd.cpp in Sources */, A7E9B8F612D37EC400DA6239 /* maligner.cpp in Sources */, - 48A52FBC1BC428DF00548F6C /* linmemalign.cc in Sources */, A7E9B8F712D37EC400DA6239 /* manhattan.cpp in Sources */, A7E9B8F812D37EC400DA6239 /* matrixoutputcommand.cpp in Sources */, A7E9B8F912D37EC400DA6239 /* memchi2.cpp in Sources */, A7E9B8FA12D37EC400DA6239 /* memchord.cpp in Sources */, - 48A52FC81BC428DF00548F6C /* results.cc in Sources */, A7E9B8FB12D37EC400DA6239 /* memeuclidean.cpp in Sources */, A7E9B8FC12D37EC400DA6239 /* mempearson.cpp in Sources */, A7E9B8FD12D37EC400DA6239 /* mergefilecommand.cpp in Sources */, @@ -3378,7 +3078,6 @@ A7E9B90B12D37EC400DA6239 /* odum.cpp in Sources */, A7E9B90C12D37EC400DA6239 /* optionparser.cpp in Sources */, A7E9B90D12D37EC400DA6239 /* ordervector.cpp in Sources */, - 48A52FA01BC428DF00548F6C /* allpairs.cc in Sources */, A7E9B90E12D37EC400DA6239 /* otuhierarchycommand.cpp in Sources */, A7E9B90F12D37EC400DA6239 /* overlap.cpp in Sources */, A7E9B91012D37EC400DA6239 /* pairwiseseqscommand.cpp in Sources */, @@ -3386,10 +3085,7 @@ A7E9B91212D37EC400DA6239 /* parselistscommand.cpp in Sources */, A7E9B91312D37EC400DA6239 /* parsimony.cpp in Sources */, A7E9B91412D37EC400DA6239 /* parsimonycommand.cpp in Sources */, - 48A52FB01BC428DF00548F6C /* dbindex.cc in Sources */, A7E9B91512D37EC400DA6239 /* pcoacommand.cpp in Sources */, - 21C92AB61C67ACC400597EBB /* mergepairs.cc in Sources */, - 48A52FAE1BC428DF00548F6C /* db.cc in Sources */, A7E9B91712D37EC400DA6239 /* phylodiversitycommand.cpp in Sources */, A7E9B91812D37EC400DA6239 /* phylosummary.cpp in Sources */, A7E9B91912D37EC400DA6239 /* phylotree.cpp in Sources */, @@ -3405,13 +3101,11 @@ A7E9B92212D37EC400DA6239 /* quitcommand.cpp in Sources */, A7E9B92312D37EC400DA6239 /* rabundvector.cpp in Sources */, A7E9B92412D37EC400DA6239 /* rarecalc.cpp in Sources */, - 48A52FD61BC428DF00548F6C /* sortbysize.cc in Sources */, A7E9B92512D37EC400DA6239 /* raredisplay.cpp in Sources */, A7E9B92612D37EC400DA6239 /* rarefact.cpp in Sources */, A7E9B92712D37EC400DA6239 /* rarefactcommand.cpp in Sources */, A7E9B92812D37EC400DA6239 /* rarefactsharedcommand.cpp in Sources */, A7E9B92912D37EC400DA6239 /* readblast.cpp in Sources */, - 48A52FD41BC428DF00548F6C /* sortbylength.cc in Sources */, A7E9B92A12D37EC400DA6239 /* readcluster.cpp in Sources */, A7E9B92B12D37EC400DA6239 /* readcolumn.cpp in Sources */, A7E9B92F12D37EC400DA6239 /* readphylip.cpp in Sources */, @@ -3419,17 +3113,13 @@ A7E9B93212D37EC400DA6239 /* removegroupscommand.cpp in Sources */, A7E9B93312D37EC400DA6239 /* removelineagecommand.cpp in Sources */, A7E9B93512D37EC400DA6239 /* removeseqscommand.cpp in Sources */, - 48A52FDE1BC428DF00548F6C /* util.cc in Sources */, A7E9B93612D37EC400DA6239 /* reportfile.cpp in Sources */, A7E9B93712D37EC400DA6239 /* reversecommand.cpp in Sources */, - 48A52FD81BC428DF00548F6C /* subsample.cc in Sources */, A7E9B93812D37EC400DA6239 /* sabundvector.cpp in Sources */, A7E9B93912D37EC400DA6239 /* screenseqscommand.cpp in Sources */, A7E9B93A12D37EC400DA6239 /* secondarystructurecommand.cpp in Sources */, A7E9B93B12D37EC400DA6239 /* sensspeccommand.cpp in Sources */, - 48A52FC61BC428DF00548F6C /* msa.cc in Sources */, A7E9B93C12D37EC400DA6239 /* seqerrorcommand.cpp in Sources */, - 48A52FC21BC428DF00548F6C /* md5.c in Sources */, 489B55721BCD7F0100FB7DC8 /* vsearchfileparser.cpp in Sources */, A7E9B93D12D37EC400DA6239 /* seqsummarycommand.cpp in Sources */, A7E9B93E12D37EC400DA6239 /* sequence.cpp in Sources */, @@ -3449,7 +3139,6 @@ A7E9B94B12D37EC400DA6239 /* sharedjackknife.cpp in Sources */, A7E9B94C12D37EC400DA6239 /* sharedjclass.cpp in Sources */, A7E9B94D12D37EC400DA6239 /* sharedjest.cpp in Sources */, - 48A52FDC1BC428DF00548F6C /* userfields.cc in Sources */, A7E9B94E12D37EC400DA6239 /* sharedkstest.cpp in Sources */, A7E9B94F12D37EC400DA6239 /* sharedkulczynski.cpp in Sources */, A7E9B95012D37EC400DA6239 /* sharedkulczynskicody.cpp in Sources */, @@ -3470,15 +3159,12 @@ A7E9B95D12D37EC400DA6239 /* sharedsorclass.cpp in Sources */, A7E9B95E12D37EC400DA6239 /* sharedsorest.cpp in Sources */, A7E9B95F12D37EC400DA6239 /* sharedthetan.cpp in Sources */, - 48A52FA21BC428DF00548F6C /* arch.cc in Sources */, 48705AC819BE32C50075E977 /* abstractrandomforest.cpp in Sources */, A7E9B96012D37EC400DA6239 /* sharedthetayc.cpp in Sources */, A7E9B96112D37EC400DA6239 /* sharedutilities.cpp in Sources */, A7E9B96212D37EC400DA6239 /* shen.cpp in Sources */, A7E9B96312D37EC400DA6239 /* shhhercommand.cpp in Sources */, - 48A52FD01BC428DF00548F6C /* showalign.cc in Sources */, A7E9B96412D37EC400DA6239 /* simpson.cpp in Sources */, - 48A52FB61BC428DF00548F6C /* fastq.cc in Sources */, A7E9B96512D37EC400DA6239 /* simpsoneven.cpp in Sources */, A7E9B96612D37EC400DA6239 /* singlelinkage.cpp in Sources */, A7E9B96712D37EC400DA6239 /* slayer.cpp in Sources */, @@ -3496,11 +3182,8 @@ A7E9B97112D37EC400DA6239 /* splitmatrix.cpp in Sources */, A7E9B97212D37EC400DA6239 /* structchi2.cpp in Sources */, A7E9B97312D37EC400DA6239 /* structchord.cpp in Sources */, - 48A52FA81BC428DF00548F6C /* city.cc in Sources */, A7E9B97412D37EC400DA6239 /* structeuclidean.cpp in Sources */, A7E9B97512D37EC400DA6239 /* structkulczynski.cpp in Sources */, - 48A52FA61BC428DF00548F6C /* chimera.cc in Sources */, - 48A52FCC1BC428DF00548F6C /* searchcore.cc in Sources */, A7E9B97612D37EC400DA6239 /* structpearson.cpp in Sources */, A7E9B97712D37EC400DA6239 /* subsamplecommand.cpp in Sources */, A7E9B97812D37EC400DA6239 /* suffixdb.cpp in Sources */, @@ -3519,14 +3202,12 @@ A7E9B98412D37EC400DA6239 /* trimseqscommand.cpp in Sources */, A7E9B98512D37EC400DA6239 /* unifracunweightedcommand.cpp in Sources */, A7E9B98612D37EC400DA6239 /* unifracweightedcommand.cpp in Sources */, - 48A52FCE1BC428DF00548F6C /* sha1.c in Sources */, A7E9B98712D37EC400DA6239 /* unweighted.cpp in Sources */, A7E9B98812D37EC400DA6239 /* uvest.cpp in Sources */, A7E9B98912D37EC400DA6239 /* validcalculator.cpp in Sources */, A7E9B98A12D37EC400DA6239 /* validparameter.cpp in Sources */, A7E9B98B12D37EC400DA6239 /* venn.cpp in Sources */, A7E9B98C12D37EC400DA6239 /* venncommand.cpp in Sources */, - 48A52FC41BC428DF00548F6C /* minheap.cc in Sources */, A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */, A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */, A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */, @@ -3539,7 +3220,6 @@ A71FE12C12EDF72400963CA7 /* mergegroupscommand.cpp in Sources */, 7E6BE10A12F710D8007ADDBE /* refchimeratest.cpp in Sources */, A7A61F2D130062E000E05B6B /* amovacommand.cpp in Sources */, - 48A52F9E1BC428DF00548F6C /* align.cc in Sources */, A75790591301749D00A30DAB /* homovacommand.cpp in Sources */, 481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */, A7FA10021302E097003860FE /* mantelcommand.cpp in Sources */, @@ -3587,13 +3267,11 @@ A74D59A4159A1E2000043046 /* counttable.cpp in Sources */, A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */, A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */, - 48A52FAC1BC428DF00548F6C /* cpu.cc in Sources */, A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */, A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */, A7386C29161A110800651424 /* decisiontree.cpp in Sources */, A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */, 835FE03D19F00640005AA754 /* classifysvmsharedcommand.cpp in Sources */, - 48A52FB81BC428DF00548F6C /* fastqops.cc in Sources */, A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */, A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */, A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */, @@ -3625,7 +3303,6 @@ A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */, A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */, A7B093C018579F0400843CD1 /* pam.cpp in Sources */, - 48A52FA41BC428DF00548F6C /* bitmap.cc in Sources */, A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; @@ -3660,7 +3337,7 @@ ); PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = iphoneos; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Debug; @@ -3688,7 +3365,7 @@ ONLY_ACTIVE_ARCH = YES; PRELINK_LIBS = ""; PRODUCT_NAME = mothur; - SDKROOT = iphoneos; + SDKROOT = macosx; SKIP_INSTALL = NO; "VALID_ARCHS[sdk=*]" = "i386 x86_64"; }; diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 8b0ef3a3..004b3071 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -13,8 +13,8 @@ #include "readmatrix.hpp" #include "clusterdoturcommand.h" #include "sequence.hpp" -#include "vsearch.h" #include "vsearchfileparser.h" +#include "systemcommand.h" //********************************************************************************************************************** vector ClusterCommand::setParameters(){ @@ -275,13 +275,16 @@ ClusterCommand::ClusterCommand(string option) { if ((method == "furthest") || (method == "nearest") || (method == "average") || (method == "weighted") || (method == "agc") || (method == "dgc")) { } else { m->mothurOut("Not a valid clustering method. Valid clustering algorithms are furthest, nearest, average, weighted, agc and dgc."); m->mothurOutEndLine(); abort = true; } - + + if ((method == "agc") || (method == "dgc")) { + if (fastafile == "") { m->mothurOut("[ERROR]: You must provide a fasta file when using the agc or dgc clustering methods, aborting\n."); abort = true;} + } + showabund = validParameter.validFile(parameters, "showabund", false); if (showabund == "not found") { showabund = "T"; } timing = validParameter.validFile(parameters, "timing", false); if (timing == "not found") { timing = "F"; } - } } catch(exception& e) { @@ -371,6 +374,53 @@ int ClusterCommand::execute(){ int ClusterCommand::runVsearchCluster(){ try { + //look for uchime exe + string path = m->argv; + string tempPath = path; + for (int i = 0; i < path.length(); i++) { tempPath[i] = tolower(path[i]); } + path = path.substr(0, (tempPath.find_last_of('m'))); + + string vsearchCommand; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + vsearchCommand = path + "vsearch"; // format the database, -o option gives us the ability + if (m->debug) { + m->mothurOut("[DEBUG]: vsearch location using \"which vsearch\" = "); + Command* newCommand = new SystemCommand("which vsearch"); m->mothurOutEndLine(); + newCommand->execute(); + delete newCommand; + m->mothurOut("[DEBUG]: Mothur's location using \"which mothur\" = "); + newCommand = new SystemCommand("which mothur"); m->mothurOutEndLine(); + newCommand->execute(); + delete newCommand; + } +#else + vsearchCommand = path + "vsearch.exe"; +#endif + + //test to make sure uchime exists + ifstream in; + vsearchCommand = m->getFullPathName(vsearchCommand); + int ableToOpen = m->openInputFile(vsearchCommand, in, "no error"); in.close(); + if(ableToOpen == 1) { + m->mothurOut(vsearchCommand + " file does not exist. Checking path... \n"); + //check to see if uchime is in the path?? + + string uLocation = m->findProgramPath("vsearch"); + + + ifstream in2; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + ableToOpen = m->openInputFile(uLocation, in2, "no error"); in2.close(); +#else + ableToOpen = m->openInputFile((uLocation + ".exe"), in2, "no error"); in2.close(); +#endif + + if(ableToOpen == 1) { m->mothurOut("[ERROR]: " + uLocation + " file does not exist. mothur requires the vsearch executable."); m->mothurOutEndLine(); abort = true; } + else { m->mothurOut("Found vsearch in your path, using " + uLocation + "\n");vsearchLocation = uLocation; } + }else { vsearchLocation = vsearchCommand; } + + vsearchLocation = m->getFullPathName(vsearchLocation); + string vsearchFastafile = ""; VsearchFileParser* vParse; if ((namefile == "") && (countfile == "")) { vParse = new VsearchFileParser(fastafile); } else if (namefile != "") { vParse = new VsearchFileParser(fastafile, namefile, "name"); } @@ -430,19 +480,33 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri //vsearch --maxaccepts 16 --usersort --id 0.97 --minseqlength 30 --wordlength 8 --uc $ROOT.clustered.uc --cluster_smallmem $ROOT.sorted.fna --maxrejects 64 --strand both --log $ROOT.clustered.log --sizeorder - int numArgs = 11; if (method == "dgc") { numArgs = 10; } //no sizeorder for dgc - char** vsearchParameters; - vsearchParameters = new char*[numArgs]; + //no sizeorder for dgc - vsearchParameters[0] = new char[8]; - *vsearchParameters[0] = '\0'; strncat(vsearchParameters[0], "vsearch", 7); + ucClusteredFile = m->getFullPathName(ucClusteredFile); + inputFile = m->getFullPathName(inputFile); + logfile = m->getFullPathName(logfile); + + //to allow for spaces in the path + ucClusteredFile = "\"" + ucClusteredFile + "\""; + inputFile = "\"" + inputFile + "\""; + logfile = "\"" + logfile + "\""; + + vector cPara; + + string vsearchCommand = vsearchLocation; + vsearchCommand = "\"" + vsearchCommand + "\" "; + + vector vsearchParameters; + char* vsearchParameter = new char[vsearchCommand.length()+1]; vsearchParameter[0] = '\0'; strncat(vsearchParameter, vsearchCommand.c_str(), vsearchCommand.length()); + vsearchParameters.push_back(vsearchParameter); - int parameterCount = 1; //--maxaccepts=16 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts=16", 15); parameterCount++; + char* maxaccepts = new char[16]; maxaccepts[0] = '\0'; strncat(maxaccepts, "--maxaccepts=16", 15); + vsearchParameters.push_back(maxaccepts); //--usersort - vsearchParameters[parameterCount] = new char[11]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--usersort", 10); parameterCount++; + char* usersort = new char[11]; usersort[0] = '\0'; strncat(usersort, "--usersort", 10); + vsearchParameters.push_back(usersort); //--id=0.97 cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); @@ -450,53 +514,68 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri else if (cutoffString.length() < 4) { for (int i = cutoffString.length(); i < 4; i++) { cutoffString += "0"; } } cutoffString = "--id=" + cutoffString; - vsearchParameters[parameterCount] = new char[cutoffString.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), cutoffString.length()); parameterCount++; + char* cutoffParameter = new char[cutoffString.length()+1]; cutoffParameter[0] = '\0'; strncat(cutoffParameter, cutoffString.c_str(), cutoffString.length()); + vsearchParameters.push_back(cutoffParameter); //--minseqlength=30 - vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength=30", 17); parameterCount++; + char* minseqlength = new char[18]; minseqlength[0] = '\0'; strncat(minseqlength, "--minseqlength=30", 17); + vsearchParameters.push_back(minseqlength); //--wordlength=8 - vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength=8", 14); parameterCount++; - + char* wordlength = new char[15]; wordlength[0] = '\0'; strncat(wordlength, "--wordlength=8", 14); + vsearchParameters.push_back(wordlength); + //--uc=$ROOT.clustered.uc string tempIn = "--uc=" + ucClusteredFile; - vsearchParameters[parameterCount] = new char[tempIn.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); - parameterCount++; + char* uc = new char[tempIn.length()+1]; uc[0] = '\0'; strncat(uc, tempIn.c_str(), tempIn.length()); + vsearchParameters.push_back(uc); //--cluster_smallmem $ROOT.sorted.fna string tempSorted = "--cluster_smallmem=" + inputFile; - vsearchParameters[parameterCount] = new char[tempSorted.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempSorted.c_str(), tempSorted.length()); - parameterCount++; + char* cluster_smallmen = new char[tempSorted.length()+1]; cluster_smallmen[0] = '\0'; strncat(cluster_smallmen, tempSorted.c_str(), tempSorted.length()); + vsearchParameters.push_back(cluster_smallmen); //--maxrejects=64 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects=64", 15); parameterCount++; + char* maxrejects = new char[16]; maxrejects[0] = '\0'; strncat(maxrejects, "--maxrejects=64", 15); + vsearchParameters.push_back(maxrejects); //--strand=both - vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand=both", 13); parameterCount++; + char* strand = new char[14]; strand[0] = '\0'; strncat(strand, "--strand=both", 13); + vsearchParameters.push_back(strand); //--log=$ROOT.clustered.log string tempLog = "--log=" + logfile; - vsearchParameters[parameterCount] = new char[tempLog.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempLog.c_str(), tempLog.length()); - parameterCount++; + char* log = new char[tempLog.length()+1]; log[0] = '\0'; strncat(log, tempLog.c_str(), tempLog.length()); + vsearchParameters.push_back(log); - if (method == "agc") { //--sizeorder - vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; - } + char* sizeorder = new char[12]; sizeorder[0] = '\0'; strncat(sizeorder, "--sizeorder", 11); + vsearchParameters.push_back(sizeorder); + delete sizeorder; + } - if (m->debug) { for(int i = 0; i < numArgs; i++) { cout << vsearchParameters[i]; } cout << endl; } - - errno = 0; - vsearch_main(numArgs, vsearchParameters); - + if (m->debug) { for(int i = 0; i < vsearchParameters.size(); i++) { cout << vsearchParameters[i]; } cout << endl; } + + string commandString = ""; + for (int i = 0; i < vsearchParameters.size(); i++) { commandString += toString(vsearchParameters[i]) + " "; } + + //cout << "commandString = " << commandString << endl; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) +#else + commandString = "\"" + commandString + "\""; +#endif + if (m->debug) { m->mothurOut("[DEBUG]: vsearch cluster command = " + commandString + ".\n"); } + system(commandString.c_str()); + //free memory - for(int i = 0; i < numArgs; i++) { delete[] vsearchParameters[i]; } - delete[] vsearchParameters; + // for(int i = 0; i < vsearchParameters.size(); i++) { delete vsearchParameters[i]; } + //remove "" from filenames + ucClusteredFile = ucClusteredFile.substr(1, ucClusteredFile.length()-2); + inputFile = inputFile.substr(1, inputFile.length()-2); + logfile = logfile.substr(1, logfile.length()-2); + return 0; } catch(exception& e) { diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index 39d261c4..595c7a23 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -54,7 +54,7 @@ class ClusterCommand : public Command { bool abort, hard, sim; - string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile; + string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile, vsearchLocation; double cutoff; float adjust; string showabund, timing; diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 15060284..1c20fbfc 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -4666,7 +4666,7 @@ int MothurOut::printVsearchFile(vector& nameMapCount, string fi //print new file in order of for (int i = 0; i < nameMapCount.size(); i++) { if (control_pressed) {break;} - out << ">" << nameMapCount[i].name << "/ab=" << nameMapCount[i].numIdentical << "/" << endl << nameMapCount[i].seq << endl; + out << ">" << nameMapCount[i].name << "/size=" << nameMapCount[i].numIdentical << "/" << endl << nameMapCount[i].seq << endl; } out.close(); diff --git a/source/vsearch_src/abundance.cc b/source/vsearch_src/abundance.cc deleted file mode 100755 index 69a89358..00000000 --- a/source/vsearch_src/abundance.cc +++ /dev/null @@ -1,181 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -abundance_t * abundance_init(void) -{ - abundance_t * a = (abundance_t *) xmalloc(sizeof(abundance_t)); - if (regcomp(&a->regex, "(^|;)size=([0-9]+)(;|$)",REG_EXTENDED)) - fatal("Compilation of regular expression for abundance annotation failed"); - return a; -} - -void abundance_exit(abundance_t * a) -{ - regfree(&a->regex); - free(a); -} - -long abundance_get(abundance_t * a, char * header) -{ - /* read size/abundance annotation */ - - long abundance = 1; - regmatch_t pmatch[4]; - - if (!regexec(&a->regex, header, 4, pmatch, 0)) - { - long number = atol(header + pmatch[2].rm_so); - if (number > 0) - abundance = number; - else - fatal("Invalid (zero) abundance annotation in fasta header"); - } - return abundance; -} - -void abundance_fprint_header_with_size(abundance_t * a, - FILE * fp, - char * header, - int header_length, - unsigned long size) -{ - /* remove any previous size annotation */ - /* regexp search for "(^|;)(\d+)(;|$)" */ - /* replace by ';' if not at either end */ - - regmatch_t pmatch[1]; - - if (!regexec(&a->regex, header, 1, pmatch, 0)) - { - int pat_start = pmatch[0].rm_so; - int pat_end = pmatch[0].rm_eo; - - fprintf(fp, - "%.*s%s%.*s%ssize=%lu;", - pat_start, header, - (pat_start > 0 ? ";" : ""), - header_length - pat_end, header + pat_end, - (((pat_end < header_length) && - (header[header_length - 1] != ';')) ? ";" : ""), - size); - } - else - { - fprintf(fp, - "%s%ssize=%lu;", - header, - (((header_length == 0) || - (header[header_length - 1] != ';')) ? ";" : ""), - size); - } -} - -void abundance_fprint_header_strip_size(abundance_t * a, - FILE * fp, - char * header, - int header_length) -{ - regmatch_t pmatch[1]; - - if (!regexec(&a->regex, header, 1, pmatch, 0)) - { - int pat_start = pmatch[0].rm_so; - int pat_end = pmatch[0].rm_eo; - - fprintf(fp, - "%.*s%s%.*s", - pat_start, header, - ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", - header_length - pat_end, header + pat_end); - } - else - fprintf(fp, "%s", header); -} - -char * abundance_strip_size(abundance_t * a, - char * header, - int header_length) -{ - int ret; - char * temp = 0; - regmatch_t pmatch[1]; - - - if (!regexec(&a->regex, header, 1, pmatch, 0)) - { - int pat_start = pmatch[0].rm_so; - int pat_end = pmatch[0].rm_eo; - - ret = sprintf(temp, - "%.*s%s%.*s", - pat_start, header, - ((pat_start > 0) && (pat_end < header_length)) ? ";" : "", - header_length - pat_end, header + pat_end); - } - else - ret = sprintf(temp, "%s", header); - - if (ret == -1) - fatal("Out of memory"); - - return temp; -} diff --git a/source/vsearch_src/abundance.h b/source/vsearch_src/abundance.h deleted file mode 100755 index ad6c1cbc..00000000 --- a/source/vsearch_src/abundance.h +++ /dev/null @@ -1,85 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -typedef struct abundance_s -{ - regex_t regex; -} abundance_t; - -abundance_t * abundance_init(void); - -void abundance_exit(abundance_t * a); - -long abundance_get(abundance_t * a, char * header); - -void abundance_fprint_header_with_size(abundance_t * a, - FILE * fp, - char * header, - int header_length, - unsigned long size); - -void abundance_fprint_header_strip_size(abundance_t * a, - FILE * fp, - char * header, - int header_length); - -char * abundance_strip_size(abundance_t * a, - char * header, - int header_length); diff --git a/source/vsearch_src/align.cc b/source/vsearch_src/align.cc deleted file mode 100755 index f4a7ca6d..00000000 --- a/source/vsearch_src/align.cc +++ /dev/null @@ -1,464 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -struct nwinfo_s -{ - long dir_alloc; - long hearray_alloc; - char * dir; - long * hearray; -}; - -static const char maskup = 1; -static const char maskleft = 2; -static const char maskextup = 4; -static const char maskextleft = 8; - -inline void pushop(char newop, char ** cigarendp, char * op, int * count) -{ - if (newop == *op) - (*count)++; - else - { - *--*cigarendp = *op; - if (*count > 1) - { - char buf[25]; - int len = sprintf(buf, "%d", *count); - *cigarendp -= len; - strncpy(*cigarendp, buf, (size_t)len); - } - *op = newop; - *count = 1; - } -} - -inline void finishop(char ** cigarendp, char * op, int * count) -{ - if ((op) && (count)) - { - *--*cigarendp = *op; - if (*count > 1) - { - char buf[25]; - int len = sprintf(buf, "%d", *count); - *cigarendp -= len; - strncpy(*cigarendp, buf, (size_t)len); - } - *op = 0; - *count = 0; - } -} - -/* - - Needleman-Wunsch aligner - - finds a global alignment with maximum score - positive score for matches; negative score mismatches - gap penalties are positive, but counts negatively - - alignment priority when backtracking (from lower right corner): - 1. left/insert/e (gap in query sequence (qseq)) - 2. up/delete/f (gap in database sequence (dseq)) - 3. align/diag/h (match/mismatch) - - qseq: the reference/query/upper/vertical/from sequence - dseq: the sample/database/lower/horisontal/to sequence - - default (interior) scores: - match: +2 - mismatch: -4 - gap open: 20 - gap extend: 2 - - input - - dseq: pointer to start of database sequence - dend: pointer after database sequence - qseq: pointer to start of query sequence - qend: pointer after database sequence - score_matrix: 16x16 matrix of longs with scores for aligning two symbols - gapopen: positive number indicating penalty for opening a gap of length zero - gapextend: positive number indicating penalty for extending a gap - - output - - nwscore: the global alignment score - nwdiff: number of non-identical nucleotides in one optimal global alignment - nwalignmentlength: the length of one optimal alignment - nwalignment: cigar string with one optimal alignment - -*/ - -struct nwinfo_s * nw_init() -{ - struct nwinfo_s * nw = (struct nwinfo_s *) xmalloc(sizeof(struct nwinfo_s)); - nw->dir = 0; - nw->dir_alloc = 0; - nw->hearray = 0; - nw->hearray_alloc = 0; - return nw; -} - -void nw_exit(struct nwinfo_s * nw) -{ - if (nw->dir) - free(nw->dir); - if (nw->hearray) - free(nw->hearray); - free(nw); -} - -inline int nt_identical(char a, char b) -{ - if (chrmap_4bit[(int)a] == chrmap_4bit[(int)b]) - return 1; - else - return 0; -} - -inline long getscore(long * score_matrix, char a, char b) -{ - return score_matrix[(chrmap_4bit[(int)a]<<4) + chrmap_4bit[(int)b]]; -} - -void nw_align(char * dseq, - char * dend, - char * qseq, - char * qend, - long * score_matrix, - long gapopen_q_left, - long gapopen_q_interior, - long gapopen_q_right, - long gapopen_t_left, - long gapopen_t_interior, - long gapopen_t_right, - long gapextend_q_left, - long gapextend_q_interior, - long gapextend_q_right, - long gapextend_t_left, - long gapextend_t_interior, - long gapextend_t_right, - long * nwscore, - long * nwdiff, - long * nwgaps, - long * nwindels, - long * nwalignmentlength, - char ** nwalignment, - long queryno, - long dbseqno, - struct nwinfo_s * nw) -{ - - long h, n, e, f, h_e, h_f; - long *hep; - - long qlen = qend - qseq; - long dlen = dend - dseq; - - if (qlen * dlen > nw->dir_alloc) - { - nw->dir_alloc = qlen * dlen; - nw->dir = (char *) xrealloc(nw->dir, (size_t)nw->dir_alloc); - } - - long need = 2 * qlen * (long) sizeof(long); - if (need > nw->hearray_alloc) - { - nw->hearray_alloc = need; - nw->hearray = (long *) xrealloc(nw->hearray, (size_t)nw->hearray_alloc); - } - - memset(nw->dir, 0, (size_t)(qlen*dlen)); - - long i, j; - - for(i=0; ihearray[2*i] = -gapopen_t_left - (i+1) * gapextend_t_left; - if (i < qlen-1) - nw->hearray[2*i+1] = - - gapopen_t_left - (i+1) * gapextend_t_left - - gapopen_q_interior - gapextend_q_interior; - else - nw->hearray[2*i+1] = - - gapopen_t_left - (i+1) * gapextend_t_left - - gapopen_q_right - gapextend_q_right; - } - - for(j=0; jhearray; - - if (j == 0) - h = 0; - else - h = - gapopen_q_left - j * gapextend_q_left; - - if (j < dlen-1) - f = - gapopen_q_left - (j+1) * gapextend_q_left - - gapopen_t_interior - gapextend_t_interior; - else - f = - gapopen_q_left - (j+1) * gapextend_q_left - - gapopen_t_right - gapextend_t_right; - - for(i=0; idir + qlen*j+i; - - n = *hep; - e = *(hep+1); - h += getscore(score_matrix, dseq[j], qseq[i]); - - if (f > h) - { - h = f; - *d |= maskup; - } - - if (e > h) - { - h = e; - *d |= maskleft; - } - - *hep = h; - - if (i < qlen-1) - { - h_e = h - gapopen_q_interior - gapextend_q_interior; - e -= gapextend_q_interior; - } - else - { - h_e = h - gapopen_q_right - gapextend_q_right; - e -= gapextend_q_right; - } - - if (j < dlen-1) - { - h_f = h - gapopen_t_interior - gapextend_t_interior; - f -= gapextend_t_interior; - } - else - { - h_f = h - gapopen_t_right - gapextend_t_right; - f -= gapextend_t_right; - } - - if (f > h_f) - *d |= maskextup; - else - f = h_f; - - if (e > h_e) - *d |= maskextleft; - else - e = h_e; - - *(hep+1) = e; - h = n; - hep += 2; - } - } - - long dist = nw->hearray[2*qlen-2]; - - /* backtrack: count differences and save alignment in cigar string */ - - long score = 0; - long alength = 0; - long matches = 0; - long gaps = 0; - long indels = 0; - - char * cigar = (char *) xmalloc((size_t)(qlen + dlen + 1)); - char * cigarend = cigar+qlen+dlen+1; - - char op = 0; - int count = 0; - *(--cigarend) = 0; - - i = qlen; - j = dlen; - - while ((i>0) && (j>0)) - { - long gapopen_q = (i < qlen) ? gapopen_q_interior : gapopen_q_right; - long gapextend_q = (i < qlen) ? gapextend_q_interior : gapextend_q_right; - long gapopen_t = (j < dlen) ? gapopen_t_interior : gapopen_t_right; - long gapextend_t = (j < dlen) ? gapextend_t_interior : gapextend_t_right; - - int d = nw->dir[qlen*(j-1)+(i-1)]; - - alength++; - - if ((op == 'I') && (d & maskextleft)) - { - score -= gapextend_q; - indels++; - j--; - pushop('I', &cigarend, &op, &count); - } - else if ((op == 'D') && (d & maskextup)) - { - score -= gapextend_t; - indels++; - i--; - pushop('D', &cigarend, &op, &count); - } - else if (d & maskleft) - { - score -= gapextend_q; - indels++; - if (op != 'I') - { - score -= gapopen_q; - gaps++; - } - j--; - pushop('I', &cigarend, &op, &count); - } - else if (d & maskup) - { - score -= gapextend_t; - indels++; - if (op != 'D') - { - score -= gapopen_t; - gaps++; - } - i--; - pushop('D', &cigarend, &op, &count); - } - else - { - score += getscore(score_matrix, dseq[j-1], qseq[i-1]); - if (nt_identical(dseq[j-1], qseq[i-1])) - matches++; - i--; - j--; - pushop('M', &cigarend, &op, &count); - } - } - - while(i>0) - { - alength++; - score -= gapextend_t_left; - indels++; - if (op != 'D') - { - score -= gapopen_t_left; - gaps++; - } - i--; - pushop('D', &cigarend, &op, &count); - } - - while(j>0) - { - alength++; - score -= gapextend_q_left; - indels++; - if (op != 'I') - { - score -= gapopen_q_left; - gaps++; - } - j--; - pushop('I', &cigarend, &op, &count); - } - - finishop(&cigarend, &op, &count); - - /* move and reallocate cigar */ - - long cigarlength = cigar+qlen+dlen-cigarend; - memmove(cigar, cigarend, (size_t)(cigarlength+1)); - cigar = (char*) xrealloc(cigar, (size_t)(cigarlength+1)); - - * nwscore = dist; - * nwdiff = alength - matches; - * nwalignmentlength = alength; - * nwalignment = cigar; - * nwgaps = gaps; - * nwindels = indels; - -#if 1 - if (score != dist) - { - fprintf(stderr, "WARNING: Error with query no %ld and db sequence no %ld:\n", queryno, dbseqno); - fprintf(stderr, "Initial and recomputed alignment score disagreement: %ld %ld\n", dist, score); - fprintf(stderr, "Alignment: %s\n", cigar); - - if (opt_log) - { - fprintf(fp_log, "WARNING: Error with query no %ld and db sequence no %ld:\n", queryno, dbseqno); - fprintf(fp_log, "Initial and recomputed alignment score disagreement: %ld %ld\n", dist, score); - fprintf(fp_log, "Alignment: %s\n", cigar); - fprintf(fp_log, "\n"); - } - } -#endif -} diff --git a/source/vsearch_src/align.h b/source/vsearch_src/align.h deleted file mode 100755 index 23d7ffa1..00000000 --- a/source/vsearch_src/align.h +++ /dev/null @@ -1,92 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -struct nwinfo_s; - -struct nwinfo_s * nw_init(); - -void nw_exit(struct nwinfo_s * nw); - -void nw_align(char * dseq, - char * dend, - char * qseq, - char * qend, - long * score_matrix, - long gapopen_q_left, - long gapopen_q_interior, - long gapopen_q_right, - long gapopen_t_left, - long gapopen_t_interior, - long gapopen_t_right, - long gapextend_q_left, - long gapextend_q_interior, - long gapextend_q_right, - long gapextend_t_left, - long gapextend_t_interior, - long gapextend_t_right, - long * nwscore, - long * nwdiff, - long * nwgaps, - long * nwindels, - long * nwalignmentlength, - char ** nwalignment, - long queryno, - long dbseqno, - struct nwinfo_s * nw); diff --git a/source/vsearch_src/align_simd.cc b/source/vsearch_src/align_simd.cc deleted file mode 100755 index 778e4906..00000000 --- a/source/vsearch_src/align_simd.cc +++ /dev/null @@ -1,1314 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* - Using 16-bit signed values, from -32768 to +32767. - match: positive - mismatch: negative - gap penalties: positive (open, extend, query/target, left/interior/right) - optimal global alignment (NW) - maximize score -*/ - -//#define DEBUG - -#define CHANNELS 8 -#define CDEPTH 4 - -/* - Due to memory usage, limit the product of the length of the sequences. - If the product of the query length and any target sequence length - is above the limit, the alignment will not be computed and a score - of SHRT_MAX will be returned as the score. - If an overflow occurs during alignment computation, a score of - SHRT_MAX will also be returned. - - The limit is set to 5 000 * 5 000 = 25 000 000. This will allocate up to - 200 MB per thread. It will align pairs of sequences less than 5000 nt long - using the SIMD implementation, larger alignments will be performed with - the linear memory aligner. -*/ - -#define MAXSEQLENPRODUCT 25000000 -//#define MAXSEQLENPRODUCT 160000 - -static long scorematrix[16][16]; - -struct s16info_s -{ - __m128i matrix[32]; - __m128i * hearray; - __m128i * dprofile; - __m128i ** qtable; - unsigned short * dir; - char * qseq; - unsigned long diralloc; - - char * cigar; - char * cigarend; - long cigaralloc; - int opcount; - char op; - - int qlen; - int maxdlen; - CELL penalty_gap_open_query_left; - CELL penalty_gap_open_target_left; - CELL penalty_gap_open_query_interior; - CELL penalty_gap_open_target_interior; - CELL penalty_gap_open_query_right; - CELL penalty_gap_open_target_right; - CELL penalty_gap_extension_query_left; - CELL penalty_gap_extension_target_left; - CELL penalty_gap_extension_query_interior; - CELL penalty_gap_extension_target_interior; - CELL penalty_gap_extension_query_right; - CELL penalty_gap_extension_target_right; -}; - -void _mm_print(__m128i x) -{ - unsigned short * y = (unsigned short*)&x; - for (int i=0; i<8; i++) - printf("%s%6d", (i>0?" ":""), y[7-i]); -} - -void _mm_print2(__m128i x) -{ - signed short * y = (signed short*)&x; - for (int i=0; i<8; i++) - printf("%s%2d", (i>0?" ":""), y[7-i]); -} - -void dprofile_dump16(CELL * dprofile) -{ - char * s = sym_nt_4bit; - printf("\ndprofile:\n"); - for(int i=0; i<16; i++) - { - printf("%c: ",s[i]); - for(int k=0; kH initially (must go up) (4th pri) - in DIR[2..3] if E>max(H,F) (must go left) (3rd pri) - in DIR[4..5] if new F>H (must extend up) (2nd pri) - in DIR[6..7] if new E>H (must extend left) (1st pri) - no bits set: go diagonally -*/ - -#define ALIGNCORE(H, N, F, V, PATH, QR_q, R_q, QR_t, R_t, H_MIN, H_MAX) \ - H = _mm_adds_epi16(H, V); \ - *(PATH+0) = _mm_movemask_epi8(_mm_cmpgt_epi16(F, H)); \ - H = _mm_max_epi16(H, F); \ - *(PATH+1) = _mm_movemask_epi8(_mm_cmpgt_epi16(E, H)); \ - H = _mm_max_epi16(H, E); \ - H_MIN = _mm_min_epi16(H_MIN, H); \ - H_MAX = _mm_max_epi16(H_MAX, H); \ - N = H; \ - HF = _mm_subs_epi16(H, QR_t); \ - F = _mm_subs_epi16(F, R_t); \ - *(PATH+2) = _mm_movemask_epi8(_mm_cmpgt_epi16(F, HF)); \ - F = _mm_max_epi16(F, HF); \ - HE = _mm_subs_epi16(H, QR_q); \ - E = _mm_subs_epi16(E, R_q); \ - *(PATH+3) = _mm_movemask_epi8(_mm_cmpgt_epi16(E, HE)); \ - E = _mm_max_epi16(E, HE); - - -void aligncolumns_first(__m128i * Sm, - __m128i * hep, - __m128i ** qp, - __m128i QR_q_i, - __m128i R_q_i, - __m128i QR_q_r, - __m128i R_q_r, - __m128i QR_t_0, - __m128i R_t_0, - __m128i QR_t_1, - __m128i R_t_1, - __m128i QR_t_2, - __m128i R_t_2, - __m128i QR_t_3, - __m128i R_t_3, - __m128i h0, - __m128i h1, - __m128i h2, - __m128i h3, - __m128i f0, - __m128i f1, - __m128i f2, - __m128i f3, - __m128i * _h_min, - __m128i * _h_max, - __m128i Mm, - __m128i M_QR_t_left, - __m128i M_R_t_left, - __m128i M_QR_q_interior, - __m128i M_QR_q_right, - long ql, - unsigned short * dir) -{ - __m128i h4, h5, h6, h7, h8, E, HE, HF; - __m128i * vp; - __m128i h_min = _mm_setzero_si128(); - __m128i h_max = _mm_setzero_si128(); - long i; - - f0 = _mm_subs_epi16(f0, QR_t_0); - f1 = _mm_subs_epi16(f1, QR_t_1); - f2 = _mm_subs_epi16(f2, QR_t_2); - f3 = _mm_subs_epi16(f3, QR_t_3); - - for(i=0; i < ql - 1; i++) - { - vp = qp[i+0]; - - h4 = hep[2*i+0]; - - E = hep[2*i+1]; - - /* - Initialize selected h and e values for next/this round. - First zero those cells where a new sequence starts - by using an unsigned saturated subtraction of a huge value to - set it to zero. - Then use signed subtraction to obtain the correct value. - */ - - h4 = _mm_subs_epu16(h4, Mm); - h4 = _mm_subs_epi16(h4, M_QR_t_left); - - E = _mm_subs_epu16(E, Mm); - E = _mm_subs_epi16(E, M_QR_t_left); - E = _mm_subs_epi16(E, M_QR_q_interior); - - M_QR_t_left = _mm_adds_epi16(M_QR_t_left, M_R_t_left); - - ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, - QR_q_i, R_q_i, QR_t_0, R_t_0, h_min, h_max); - ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, - QR_q_i, R_q_i, QR_t_1, R_t_1, h_min, h_max); - ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, - QR_q_i, R_q_i, QR_t_2, R_t_2, h_min, h_max); - ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, - QR_q_i, R_q_i, QR_t_3, R_t_3, h_min, h_max); - - hep[2*i+0] = h8; - hep[2*i+1] = E; - - h0 = h4; - h1 = h5; - h2 = h6; - h3 = h7; - } - - /* the final round - using query gap penalties for right end */ - - vp = qp[i+0]; - - E = hep[2*i+1]; - - E = _mm_subs_epu16(E, Mm); - E = _mm_subs_epi16(E, M_QR_t_left); - E = _mm_subs_epi16(E, M_QR_q_right); - - ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, - QR_q_r, R_q_r, QR_t_0, R_t_0, h_min, h_max); - ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, - QR_q_r, R_q_r, QR_t_1, R_t_1, h_min, h_max); - ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, - QR_q_r, R_q_r, QR_t_2, R_t_2, h_min, h_max); - ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, - QR_q_r, R_q_r, QR_t_3, R_t_3, h_min, h_max); - - hep[2*i+0] = h8; - hep[2*i+1] = E; - - Sm[0] = h5; - Sm[1] = h6; - Sm[2] = h7; - Sm[3] = h8; - - *_h_min = h_min; - *_h_max = h_max; -} - -void aligncolumns_rest(__m128i * Sm, - __m128i * hep, - __m128i ** qp, - __m128i QR_q_i, - __m128i R_q_i, - __m128i QR_q_r, - __m128i R_q_r, - __m128i QR_t_0, - __m128i R_t_0, - __m128i QR_t_1, - __m128i R_t_1, - __m128i QR_t_2, - __m128i R_t_2, - __m128i QR_t_3, - __m128i R_t_3, - __m128i h0, - __m128i h1, - __m128i h2, - __m128i h3, - __m128i f0, - __m128i f1, - __m128i f2, - __m128i f3, - __m128i * _h_min, - __m128i * _h_max, - long ql, - unsigned short * dir) -{ - __m128i h4, h5, h6, h7, h8, E, HE, HF; - __m128i * vp; - __m128i h_min = _mm_setzero_si128(); - __m128i h_max = _mm_setzero_si128(); - long i; - - f0 = _mm_subs_epi16(f0, QR_t_0); - f1 = _mm_subs_epi16(f1, QR_t_1); - f2 = _mm_subs_epi16(f2, QR_t_2); - f3 = _mm_subs_epi16(f3, QR_t_3); - - for(i=0; i < ql - 1; i++) - { - vp = qp[i+0]; - - h4 = hep[2*i+0]; - - E = hep[2*i+1]; - - ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, - QR_q_i, R_q_i, QR_t_0, R_t_0, h_min, h_max); - ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, - QR_q_i, R_q_i, QR_t_1, R_t_1, h_min, h_max); - ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, - QR_q_i, R_q_i, QR_t_2, R_t_2, h_min, h_max); - ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, - QR_q_i, R_q_i, QR_t_3, R_t_3, h_min, h_max); - - hep[2*i+0] = h8; - hep[2*i+1] = E; - - h0 = h4; - h1 = h5; - h2 = h6; - h3 = h7; - } - - /* the final round - using query gap penalties for right end */ - - vp = qp[i+0]; - - E = hep[2*i+1]; - - ALIGNCORE(h0, h5, f0, vp[0], dir+16*i+ 0, - QR_q_r, R_q_r, QR_t_0, R_t_0, h_min, h_max); - ALIGNCORE(h1, h6, f1, vp[1], dir+16*i+ 4, - QR_q_r, R_q_r, QR_t_1, R_t_1, h_min, h_max); - ALIGNCORE(h2, h7, f2, vp[2], dir+16*i+ 8, - QR_q_r, R_q_r, QR_t_2, R_t_2, h_min, h_max); - ALIGNCORE(h3, h8, f3, vp[3], dir+16*i+12, - QR_q_r, R_q_r, QR_t_3, R_t_3, h_min, h_max); - - hep[2*i+0] = h8; - hep[2*i+1] = E; - - Sm[0] = h5; - Sm[1] = h6; - Sm[2] = h7; - Sm[3] = h8; - - *_h_min = h_min; - *_h_max = h_max; -} - -inline void pushop(s16info_s * s, char newop) -{ - if (newop == s->op) - s->opcount++; - else - { - *--s->cigarend = s->op; - if (s->opcount > 1) - { - char buf[11]; - int len = sprintf(buf, "%d", s->opcount); - s->cigarend -= len; - strncpy(s->cigarend, buf, len); - } - s->op = newop; - s->opcount = 1; - } -} - -inline void finishop(s16info_s * s) -{ - if (s->op && s->opcount) - { - *--s->cigarend = s->op; - if (s->opcount > 1) - { - char buf[11]; - int len = sprintf(buf, "%d", s->opcount); - s->cigarend -= len; - strncpy(s->cigarend, buf, len); - } - s->op = 0; - s->opcount = 0; - } -} - -void backtrack16(s16info_s * s, - char * dseq, - unsigned long dlen, - unsigned long offset, - unsigned long channel, - unsigned short * paligned, - unsigned short * pmatches, - unsigned short * pmismatches, - unsigned short * pgaps) -{ - unsigned short * dirbuffer = s->dir; - unsigned long dirbuffersize = s->qlen * s->maxdlen * 4; - unsigned long qlen = s->qlen; - char * qseq = s->qseq; - - unsigned long maskup = 3UL << (2*channel+ 0); - unsigned long maskleft = 3UL << (2*channel+16); - unsigned long maskextup = 3UL << (2*channel+32); - unsigned long maskextleft = 3UL << (2*channel+48); - -#if 0 - - printf("Dumping backtracking array\n"); - - for(unsigned long i=0; iqlen*(j/4) + - 16*i + 4*(j&3)) % dirbuffersize)); - if (d & maskup) - { - if (d & maskleft) - printf("+"); - else - printf("^"); - } - else if (d & maskleft) - { - printf("<"); - } - else - { - printf("\\"); - } - } - printf("\n"); - } - - printf("Dumping gap extension array\n"); - - for(unsigned long i=0; iqlen*(j/4) + - 16*i + 4*(j&3)) % dirbuffersize)); - if (d & maskextup) - { - if (d & maskextleft) - printf("+"); - else - printf("^"); - } - else if (d & maskextleft) - { - printf("<"); - } - else - { - printf("\\"); - } - } - printf("\n"); - } - -#endif - - unsigned short aligned = 0; - unsigned short matches = 0; - unsigned short mismatches = 0; - unsigned short gaps = 0; - - long i = qlen - 1; - long j = dlen - 1; - - s->cigarend = s->cigar + s->qlen + s->maxdlen + 1; - s->op = 0; - s->opcount = 1; - - while ((i>=0) && (j>=0)) - { - aligned++; - - unsigned long d = *((unsigned long *) (dirbuffer + - (offset + 16*s->qlen*(j/4) + - 16*i + 4*(j&3)) % dirbuffersize)); - - if ((s->op == 'I') && (d & maskextleft)) - { - j--; - pushop(s, 'I'); - } - else if ((s->op == 'D') && (d & maskextup)) - { - i--; - pushop(s, 'D'); - } - else if (d & maskleft) - { - if (s->op != 'I') - gaps++; - j--; - pushop(s, 'I'); - } - else if (d & maskup) - { - if (s->op != 'D') - gaps++; - i--; - pushop(s, 'D'); - } - else - { - if (chrmap_4bit[(int)(qseq[i])] == chrmap_4bit[(int)(dseq[j])]) - matches++; - else - mismatches++; - i--; - j--; - pushop(s, 'M'); - } - } - - while(i>=0) - { - aligned++; - if (s->op != 'D') - gaps++; - i--; - pushop(s, 'D'); - } - - while(j>=0) - { - aligned++; - if (s->op != 'I') - gaps++; - j--; - pushop(s, 'I'); - } - - finishop(s); - - /* move cigar to beginning of allocated memory area */ - int cigarlen = s->cigar + s->qlen + s->maxdlen - s->cigarend; - memmove(s->cigar, s->cigarend, cigarlen + 1); - - * paligned = aligned; - * pmatches = matches; - * pmismatches = mismatches; - * pgaps = gaps; -} - -struct s16info_s * search16_init(CELL score_match, - CELL score_mismatch, - CELL penalty_gap_open_query_left, - CELL penalty_gap_open_target_left, - CELL penalty_gap_open_query_interior, - CELL penalty_gap_open_target_interior, - CELL penalty_gap_open_query_right, - CELL penalty_gap_open_target_right, - CELL penalty_gap_extension_query_left, - CELL penalty_gap_extension_target_left, - CELL penalty_gap_extension_query_interior, - CELL penalty_gap_extension_target_interior, - CELL penalty_gap_extension_query_right, - CELL penalty_gap_extension_target_right) -{ - /* prepare alloc of qtable, dprofile, hearray, dir */ - struct s16info_s * s = (struct s16info_s *) - xmalloc(sizeof(struct s16info_s)); - - s->dprofile = (__m128i *) xmalloc(2*4*8*16); - s->qlen = 0; - s->qseq = 0; - s->maxdlen = 0; - s->dir = 0; - s->diralloc = 0; - s->hearray = 0; - s->qtable = 0; - s->cigar = 0; - s->cigarend = 0; - s->cigaralloc = 0; - - for(int i=0; i<16; i++) - for(int j=0; j<16; j++) - { - CELL value; - if (i==j) - value = opt_match; - else if ((i==0) || (j==0) || (i>4) || (j>4)) - value = 0; - else - value = opt_mismatch; - ((CELL*)(&s->matrix))[16*i+j] = value; - } - - for(int i=0; i<16; i++) - for(int j=0; j<16; j++) - { - CELL value; - if ((i==0) || (j==0) || (i>4) || (j>4)) - value = 0; - else if (i==j) - value = opt_match; - else - value = opt_mismatch; - scorematrix[i][j] = value; - } - - s->penalty_gap_open_query_left = penalty_gap_open_query_left; - s->penalty_gap_open_query_interior = penalty_gap_open_query_interior; - s->penalty_gap_open_query_right = penalty_gap_open_query_right; - - s->penalty_gap_open_target_left = penalty_gap_open_target_left; - s->penalty_gap_open_target_interior = penalty_gap_open_target_interior; - s->penalty_gap_open_target_right = penalty_gap_open_target_right; - - s->penalty_gap_extension_query_left = penalty_gap_extension_query_left; - s->penalty_gap_extension_query_interior = penalty_gap_extension_query_interior; - s->penalty_gap_extension_query_right = penalty_gap_extension_query_right; - - s->penalty_gap_extension_target_left = penalty_gap_extension_target_left; - s->penalty_gap_extension_target_interior = penalty_gap_extension_target_interior; - s->penalty_gap_extension_target_right = penalty_gap_extension_target_right; - - return s; -} - -void search16_exit(s16info_s * s) -{ - /* free mem for dprofile, hearray, dir, qtable */ - if (s->dir) - free(s->dir); - if (s->hearray) - free(s->hearray); - if (s->dprofile) - free(s->dprofile); - if (s->qtable) - free(s->qtable); - if (s->cigar) - free(s->cigar); - free(s); -} - -void search16_qprep(s16info_s * s, char * qseq, int qlen) -{ - s->qlen = qlen; - s->qseq = qseq; - - if (s->hearray) - free(s->hearray); - s->hearray = (__m128i *) xmalloc(2 * s->qlen * sizeof(__m128i)); - memset(s->hearray, 0, 2 * s->qlen * sizeof(__m128i)); - - if (s->qtable) - free(s->qtable); - s->qtable = (__m128i **) xmalloc(s->qlen * sizeof(__m128i*)); - - for(int i = 0; i < qlen; i++) - s->qtable[i] = s->dprofile + 4 * chrmap_4bit[(int)(qseq[i])]; -} - -void search16(s16info_s * s, - unsigned int sequences, - unsigned int * seqnos, - CELL * pscores, - unsigned short * paligned, - unsigned short * pmatches, - unsigned short * pmismatches, - unsigned short * pgaps, - char ** pcigar) -{ - CELL ** q_start = (CELL**) s->qtable; - CELL * dprofile = (CELL*) s->dprofile; - CELL * hearray = (CELL*) s->hearray; - unsigned long qlen = s->qlen; - - /* find longest target sequence and reallocate direction buffer */ - unsigned long maxdlen = 0; - for(long i = 0; i < sequences; i++) - { - unsigned long dlen = db_getsequencelen(seqnos[i]); - /* skip the very long sequences */ - if ((long)(s->qlen) * dlen <= MAXSEQLENPRODUCT) - { - if (dlen > maxdlen) - maxdlen = dlen; - } - } - maxdlen = 4 * ((maxdlen + 3) / 4); - s->maxdlen = maxdlen; - unsigned long dirbuffersize = s->qlen * s->maxdlen * 4; - - if (dirbuffersize > s->diralloc) - { - s->diralloc = dirbuffersize; - if (s->dir) - free(s->dir); - s->dir = (unsigned short*) xmalloc(dirbuffersize * - sizeof(unsigned short)); - } - - unsigned short * dirbuffer = s->dir; - - if (s->qlen + s->maxdlen + 1 > s->cigaralloc) - { - s->cigaralloc = s->qlen + s->maxdlen + 1; - if (s->cigar) - free(s->cigar); - s->cigar = (char *) xmalloc(s->cigaralloc); - } - - __m128i T, M, T0; - - __m128i M_QR_target_left, M_R_target_left; - __m128i M_QR_query_interior; - __m128i M_QR_query_right; - - __m128i R_query_left; - __m128i QR_query_interior, R_query_interior; - __m128i QR_query_right, R_query_right; - __m128i QR_target_left, R_target_left; - __m128i QR_target_interior, R_target_interior; - __m128i QR_target_right, R_target_right; - __m128i QR_target[4], R_target[4]; - - __m128i *hep, **qp; - - BYTE * d_begin[CHANNELS]; - BYTE * d_end[CHANNELS]; - unsigned long d_offset[CHANNELS]; - BYTE * d_address[CHANNELS]; - unsigned long d_length[CHANNELS]; - long seq_id[CHANNELS]; - bool overflow[CHANNELS]; - - __m128i dseqalloc[CDEPTH]; - __m128i S[4]; - - BYTE * dseq = (BYTE*) & dseqalloc; - BYTE zero = 0; - - unsigned long next_id = 0; - unsigned long done = 0; - - T0 = _mm_set_epi16(0, 0, 0, 0, 0, 0, 0, 0xffff); - - R_query_left = _mm_set1_epi16(s->penalty_gap_extension_query_left); - - QR_query_interior = _mm_set1_epi16(s->penalty_gap_open_query_interior + - s->penalty_gap_extension_query_interior); - R_query_interior = _mm_set1_epi16(s->penalty_gap_extension_query_interior); - - QR_query_right = _mm_set1_epi16(s->penalty_gap_open_query_right + - s->penalty_gap_extension_query_right); - R_query_right = _mm_set1_epi16(s->penalty_gap_extension_query_right); - - QR_target_left = _mm_set1_epi16(s->penalty_gap_open_target_left + - s->penalty_gap_extension_target_left); - R_target_left = _mm_set1_epi16(s->penalty_gap_extension_target_left); - - QR_target_interior = _mm_set1_epi16(s->penalty_gap_open_target_interior + - s->penalty_gap_extension_target_interior); - R_target_interior = _mm_set1_epi16(s->penalty_gap_extension_target_interior); - - QR_target_right = _mm_set1_epi16(s->penalty_gap_open_target_right + - s->penalty_gap_extension_target_right); - R_target_right = _mm_set1_epi16(s->penalty_gap_extension_target_right); - - hep = (__m128i*) hearray; - qp = (__m128i**) q_start; - - for (int c=0; cpenalty_gap_open_query_left + - s->penalty_gap_extension_query_left); - gap_penalty_max = MAX(gap_penalty_max, - s->penalty_gap_open_query_interior + - s->penalty_gap_extension_query_interior); - gap_penalty_max = MAX(gap_penalty_max, - s->penalty_gap_open_query_right + - s->penalty_gap_extension_query_right); - gap_penalty_max = MAX(gap_penalty_max, - s->penalty_gap_open_target_left + - s->penalty_gap_extension_target_left); - gap_penalty_max = MAX(gap_penalty_max, - s->penalty_gap_open_target_interior + - s->penalty_gap_extension_target_interior); - gap_penalty_max = MAX(gap_penalty_max, - s->penalty_gap_open_target_right + - s->penalty_gap_extension_target_right); - - short score_min = SHRT_MIN + gap_penalty_max; - short score_max = SHRT_MAX; - - for(int i=0; i<4; i++) - { - S[i] = _mm_setzero_si128(); - dseqalloc[i] = _mm_setzero_si128(); - } - - __m128i H0 = _mm_setzero_si128(); - __m128i H1 = _mm_setzero_si128(); - __m128i H2 = _mm_setzero_si128(); - __m128i H3 = _mm_setzero_si128(); - - __m128i F0 = _mm_setzero_si128(); - __m128i F1 = _mm_setzero_si128(); - __m128i F2 = _mm_setzero_si128(); - __m128i F3 = _mm_setzero_si128(); - - int easy = 0; - - unsigned short * dir = dirbuffer; - - - while(1) - { - if (easy) - { - /* fill all channels with symbols from the database sequences */ - - for(int c=0; cmatrix, dseq); - - /* create vectors of gap penalties for target depending on whether - any of the database sequences ended in these four columns */ - - if (easy) - { - for(unsigned int j=0; j= ((d_length[c]+3) % 4))) - { - M = _mm_xor_si128(M, T); - } - T = _mm_slli_si128(T, 2); - } - QR_target[j] = _mm_adds_epi16(QR_target_interior, - _mm_and_si128(QR_diff, M)); - R_target[j] = _mm_adds_epi16(R_target_interior, - _mm_and_si128(R_diff, M)); - } - } - - __m128i h_min, h_max; - - aligncolumns_rest(S, hep, qp, - QR_query_interior, R_query_interior, - QR_query_right, R_query_right, - QR_target[0], R_target[0], - QR_target[1], R_target[1], - QR_target[2], R_target[2], - QR_target[3], R_target[3], - H0, H1, H2, H3, - F0, F1, F2, F3, - & h_min, & h_max, - qlen, dir); - - for(int c=0; c= score_max)) - overflow[c] = true; - } - } - } - else - { - /* One or more sequences ended in the previous block. - We have to switch over to a new sequence */ - - easy = 1; - - M = _mm_setzero_si128(); - T = T0; - for (int c=0; c= 0) - { - /* save score */ - - char * dbseq = (char*) d_address[c]; - long dbseqlen = d_length[c]; - long z = (dbseqlen+3) % 4; - long score = ((CELL*)S)[z*CHANNELS+c]; - - if (overflow[c]) - { - pscores[cand_id] = SHRT_MAX; - paligned[cand_id] = 0; - pmatches[cand_id] = 0; - pmismatches[cand_id] = 0; - pgaps[cand_id] = 0; - pcigar[cand_id] = xstrdup(""); - } - else - { - pscores[cand_id] = score; - backtrack16(s, dbseq, dbseqlen, d_offset[c], c, - paligned + cand_id, - pmatches + cand_id, - pmismatches + cand_id, - pgaps + cand_id); - pcigar[cand_id] = (char *) xmalloc(strlen(s->cigar)+1); - strcpy(pcigar[cand_id], s->cigar); - } - - done++; - } - - /* get next sequence of reasonable length */ - - long length = 0; - - while ((length == 0) && (next_id < sequences)) - { - cand_id = next_id++; - length = db_getsequencelen(seqnos[cand_id]); - if ((length==0) || (s->qlen * length > MAXSEQLENPRODUCT)) - { - pscores[cand_id] = SHRT_MAX; - paligned[cand_id] = 0; - pmatches[cand_id] = 0; - pmismatches[cand_id] = 0; - pgaps[cand_id] = 0; - pcigar[cand_id] = xstrdup(""); - length = 0; - done++; - } - } - - if (length > 0) - { - seq_id[c] = cand_id; - char * address = db_getsequence(seqnos[cand_id]); - d_address[c] = (BYTE*) address; - d_length[c] = length; - d_begin[c] = (unsigned char*) address; - d_end[c] = (unsigned char*) address + length; - d_offset[c] = dir - dirbuffer; - overflow[c] = false; - - ((CELL*)&H0)[c] = 0; - ((CELL*)&H1)[c] = - s->penalty_gap_open_query_left - - 1*s->penalty_gap_extension_query_left; - ((CELL*)&H2)[c] = - s->penalty_gap_open_query_left - - 2*s->penalty_gap_extension_query_left; - ((CELL*)&H3)[c] = - s->penalty_gap_open_query_left - - 3*s->penalty_gap_extension_query_left; - - ((CELL*)&F0)[c] = - s->penalty_gap_open_query_left - - 1*s->penalty_gap_extension_query_left; - ((CELL*)&F1)[c] = - s->penalty_gap_open_query_left - - 2*s->penalty_gap_extension_query_left; - ((CELL*)&F2)[c] = - s->penalty_gap_open_query_left - - 3*s->penalty_gap_extension_query_left; - ((CELL*)&F3)[c] = - s->penalty_gap_open_query_left - - 4*s->penalty_gap_extension_query_left; - - /* fill channel */ - - for(int j=0; jmatrix, dseq); - - /* create vectors of gap penalties for target depending on whether - any of the database sequences ended in these four columns */ - - if (easy) - { - for(unsigned int j=0; j= ((d_length[c]+3) % 4))) - { - M = _mm_xor_si128(M, T); - } - T = _mm_slli_si128(T, 2); - } - QR_target[j] = _mm_adds_epi16(QR_target_interior, - _mm_and_si128(QR_diff, M)); - R_target[j] = _mm_adds_epi16(R_target_interior, - _mm_and_si128(R_diff, M)); - } - } - - __m128i h_min, h_max; - - aligncolumns_first(S, hep, qp, - QR_query_interior, R_query_interior, - QR_query_right, R_query_right, - QR_target[0], R_target[0], - QR_target[1], R_target[1], - QR_target[2], R_target[2], - QR_target[3], R_target[3], - H0, H1, H2, H3, - F0, F1, F2, F3, - & h_min, & h_max, - M, - M_QR_target_left, M_R_target_left, - M_QR_query_interior, - M_QR_query_right, - qlen, dir); - - for(int c=0; c= score_max)) - overflow[c] = true; - } - } - } - - H0 = _mm_subs_epi16(H3, R_query_left); - H1 = _mm_subs_epi16(H0, R_query_left); - H2 = _mm_subs_epi16(H1, R_query_left); - H3 = _mm_subs_epi16(H2, R_query_left); - - F0 = _mm_subs_epi16(F3, R_query_left); - F1 = _mm_subs_epi16(F0, R_query_left); - F2 = _mm_subs_epi16(F1, R_query_left); - F3 = _mm_subs_epi16(F2, R_query_left); - - dir += 4 * 4 * s->qlen; - - if (dir >= dirbuffer + dirbuffersize) - dir -= dirbuffersize; - } -} diff --git a/source/vsearch_src/align_simd.h b/source/vsearch_src/align_simd.h deleted file mode 100755 index 5e90a7c5..00000000 --- a/source/vsearch_src/align_simd.h +++ /dev/null @@ -1,97 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -typedef signed short CELL; -typedef unsigned short WORD; -typedef unsigned char BYTE; -struct s16info_s; - -struct s16info_s * -search16_init(CELL score_match, - CELL score_mismatch, - CELL penalty_gap_open_query_left, - CELL penalty_gap_open_target_left, - CELL penalty_gap_open_query_interior, - CELL penalty_gap_open_target_interior, - CELL penalty_gap_open_query_right, - CELL penalty_gap_open_target_right, - CELL penalty_gap_extension_query_left, - CELL penalty_gap_extension_target_left, - CELL penalty_gap_extension_query_interior, - CELL penalty_gap_extension_target_interior, - CELL penalty_gap_extension_query_right, - CELL penalty_gap_extension_target_right); - -void -search16_exit(s16info_s * s); - -void -search16_qprep(s16info_s * s, char * qseq, int qlen); - -void -search16(s16info_s * s, - unsigned int sequences, - unsigned int * seqnos, - CELL * pscores, - unsigned short * paligned, - unsigned short * pmatches, - unsigned short * pmismatches, - unsigned short * pgaps, - char * * pcigar); diff --git a/source/vsearch_src/allpairs.cc b/source/vsearch_src/allpairs.cc deleted file mode 100755 index 6c9991c2..00000000 --- a/source/vsearch_src/allpairs.cc +++ /dev/null @@ -1,680 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* global constants/data, no need for synchronization */ -static int seqcount; /* number of database sequences */ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - -/* global data protected by mutex */ -static pthread_mutex_t mutex_input; -static pthread_mutex_t mutex_output; -static pthread_attr_t attr; -static pthread_t * pthread; - -#endif - -static int qmatches; -static int queries; -static long progress = 0; -static FILE * fp_alnout = 0; -static FILE * fp_samout = 0; -static FILE * fp_userout = 0; -static FILE * fp_blast6out = 0; -static FILE * fp_uc = 0; -static FILE * fp_fastapairs = 0; -static FILE * fp_matched = 0; -static FILE * fp_notmatched = 0; - -inline int allpairs_hit_compare_typed(struct hit * x, struct hit * y) -{ - // high id, then low id - // early target, then late target - - if (x->id > y->id) - return -1; - else - if (x->id < y->id) - return +1; - else - if (x->target < y->target) - return -1; - else - if (x->target > y->target) - return +1; - else - return 0; -} - -int allpairs_hit_compare(const void * a, const void * b) -{ - return allpairs_hit_compare_typed((struct hit *) a, (struct hit *) b); -} - -void allpairs_output_results(int hit_count, - struct hit * hits, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ - /* show results */ - long toreport = MIN(opt_maxhits, hit_count); - - if (fp_alnout) - results_show_alnout(fp_alnout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_samout) - results_show_samout(fp_samout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (toreport) - { - double top_hit_id = hits[0].id; - - for(int t = 0; t < toreport; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - if (fp_fastapairs) - results_show_fastapairs_one(fp_fastapairs, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_uc) - if ((t==0) || opt_uc_allhits) - results_show_uc_one(fp_uc, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - } - else if (opt_output_no_hits) - { - if (fp_uc) - results_show_uc_one(fp_uc, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - - if (hit_count) - { - if (opt_matched) - { - fasta_print(fp_matched, - query_head, - qsequence, - qseqlen); - } - } - else - { - if (opt_notmatched) - { - fasta_print(fp_notmatched, - query_head, - qsequence, - qseqlen); - } - } -} - -void allpairs_thread_run(long t) -{ - struct searchinfo_s sia; - - struct searchinfo_s * si = & sia; - - si->strand = 0; - si->query_head_alloc = 0; - si->seq_alloc = 0; - si->kmersamplecount = 0; - si->kmers = 0; - si->m = 0; - si->finalized = 0; - - si->hits = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); - - struct nwinfo_s * nw = nw_init(); - - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - - LinearMemoryAligner lma; - - long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); - - lma.set_parameters(scorematrix, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - /* allocate memory for alignment results */ - unsigned int maxhits = seqcount; - unsigned int * pseqnos = - (unsigned int *) xmalloc(sizeof(unsigned int) * maxhits); - CELL * pscores = - (CELL*) xmalloc(sizeof(CELL) * maxhits); - unsigned short * paligned = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - unsigned short * pmatches = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - unsigned short * pmismatches = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - unsigned short * pgaps = - (unsigned short*) xmalloc(sizeof(unsigned short) * maxhits); - char** pcigar = (char**) xmalloc(sizeof(char*) * maxhits); - - struct hit * finalhits - = (struct hit *) xmalloc(sizeof(struct hit) * seqcount); - - bool cont = 1; - - while (cont) - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&mutex_input); - //#else assume 1 thread -#endif - int query_no = queries; - - if (query_no < seqcount) - { - queries++; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); - //#else assume 1 thread -#endif - /* init search info */ - si->query_no = query_no; - si->qsize = db_getabundance(query_no); - si->query_head_len = db_getheaderlen(query_no); - si->query_head = db_getheader(query_no); - si->qseqlen = db_getsequencelen(query_no); - si->qsequence = db_getsequence(query_no); - si->rejects = 0; - si->accepts = 0; - si->hit_count = 0; - - for(int target = si->query_no + 1; - target < seqcount; target++) - { - if (opt_acceptall || search_acceptable_unaligned(si, target)) - pseqnos[si->hit_count++] = target; - } - - if (si->hit_count) - { - /* perform alignments */ - - search16_qprep(si->s, si->qsequence, si->qseqlen); - - search16(si->s, - si->hit_count, - pseqnos, - pscores, - paligned, - pmatches, - pmismatches, - pgaps, - pcigar); - - /* convert to hit structure */ - for (int h = 0; h < si->hit_count; h++) - { - struct hit * hit = si->hits + h; - - unsigned int target = pseqnos[h]; - long nwscore = pscores[h]; - - char * nwcigar; - long nwalignmentlength; - long nwmatches; - long nwmismatches; - long nwgaps; - - if (nwscore == SHRT_MAX) - { - /* In case the SIMD aligner cannot align, - perform a new alignment with the - linear memory aligner */ - - char * tseq = db_getsequence(target); - long tseqlen = db_getsequencelen(target); - - if (pcigar[h]) - free(pcigar[h]); - - nwcigar = xstrdup(lma.align(si->qsequence, - tseq, - si->qseqlen, - tseqlen)); - lma.alignstats(nwcigar, - si->qsequence, - tseq, - & nwscore, - & nwalignmentlength, - & nwmatches, - & nwmismatches, - & nwgaps); - } - else - { - nwcigar = pcigar[h]; - nwalignmentlength = paligned[h]; - nwmatches = pmatches[h]; - nwmismatches = pmismatches[h]; - nwgaps = pgaps[h]; - } - - hit->target = target; - hit->strand = 0; - hit->count = 0; - - hit->accepted = 0; - hit->rejected = 0; - hit->aligned = 1; - hit->weak = 0; - - hit->nwscore = nwscore; - hit->nwdiff = nwalignmentlength - nwmatches; - hit->nwgaps = nwgaps; - hit->nwindels = nwalignmentlength - nwmatches - nwmismatches; - hit->nwalignmentlength = nwalignmentlength; - hit->nwid = 100.0 * (nwalignmentlength - hit->nwdiff) / - nwalignmentlength; - hit->nwalignment = nwcigar; - hit->matches = nwalignmentlength - hit->nwdiff; - hit->mismatches = hit->nwdiff - hit->nwindels; - - long dseqlen = db_getsequencelen(target); - hit->shortest = MIN(si->qseqlen, dseqlen); - hit->longest = MAX(si->qseqlen, dseqlen); - - /* trim alignment, compute numbers excluding terminal gaps */ - align_trim(hit); - - /* test accept/reject criteria after alignment */ - if (opt_acceptall || search_acceptable_aligned(si, hit)) - finalhits[si->accepts++] = *hit; - } - - /* sort hits */ - qsort(finalhits, si->accepts, - sizeof(struct hit), allpairs_hit_compare); - } - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* lock mutex for update of global data and output */ - pthread_mutex_lock(&mutex_output); - //#else assume 1 thread -#endif - /* output results */ - allpairs_output_results(si->accepts, - finalhits, - si->query_head, - si->qseqlen, - si->qsequence, - 0); - - /* update stats */ - if (si->accepts) - qmatches++; - - /* show progress */ - progress += seqcount - query_no - 1; - progress_update(progress); - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#endif - /* free memory for alignment strings */ - for(int i=0; i < si->hit_count; i++) - if (si->hits[i].aligned) - free(si->hits[i].nwalignment); - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); - //#else assume 1 thread -#endif - cont = 0; - } - } - - free(finalhits); - - free(pcigar); - free(pgaps); - free(pmismatches); - free(pmatches); - free(paligned); - free(pscores); - free(pseqnos); - - search16_exit(si->s); - - nw_exit(nw); - - free(scorematrix); - - free(si->hits); -} - -void * allpairs_thread_worker(void * vp) -{ - long t = (intptr_t) vp; - allpairs_thread_run(t); - return 0; -} - -void allpairs_thread_worker_run() -{ - /* initialize threads, start them, join them and return */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* init and create worker threads, put them into stand-by mode */ - for(int t=0; t, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void allpairs_global(char * cmdline, char * progheader); diff --git a/source/vsearch_src/arch.cc b/source/vsearch_src/arch.cc deleted file mode 100755 index 7336f2d1..00000000 --- a/source/vsearch_src/arch.cc +++ /dev/null @@ -1,119 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -unsigned long arch_get_memused() -{ -#if defined (__APPLE__) || (__MACH__) - /* Mac: ru_maxrss gives the size in bytes */ - struct rusage r_usage; - getrusage(RUSAGE_SELF, & r_usage); - - return r_usage.ru_maxrss; -#elif (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - /* Linux: ru_maxrss gives the size in kilobytes */ - struct rusage r_usage; - getrusage(RUSAGE_SELF, & r_usage); - return r_usage.ru_maxrss * 1024; -#elif defined (_WIN32) - MEMORYSTATUSEX status; - status.dwLength = sizeof(status); - GlobalMemoryStatusEx(&status); - return (size_t)status.ullAvailPhys; -#else - fatal("Cannot determine amount of RAM used"); - return 0; -#endif -} - -unsigned long arch_get_memtotal() -{ -#if defined(__APPLE__) - - int mib [] = { CTL_HW, HW_MEMSIZE }; - int64_t ram = 0; - size_t length = sizeof(ram); - if(sysctl(mib, 2, &ram, &length, NULL, 0) == -1) - fatal("Cannot determine amount of RAM"); - return ram; - -#elif defined(_SC_PHYS_PAGES) && defined(_SC_PAGESIZE) - - long phys_pages = sysconf(_SC_PHYS_PAGES); - long pagesize = sysconf(_SC_PAGESIZE); - if ((phys_pages == -1) || (pagesize == -1)) - fatal("Cannot determine amount of RAM"); - return pagesize * phys_pages; -#elif defined (_WIN32) - MEMORYSTATUSEX status; - status.dwLength = sizeof(status); - GlobalMemoryStatusEx(&status); - return (size_t)status.ullTotalPhys; -#else - - struct sysinfo si; - if (sysinfo(&si)) - fatal("Cannot determine amount of RAM"); - return si.totalram * si.mem_unit; - - -#endif -} diff --git a/source/vsearch_src/arch.h b/source/vsearch_src/arch.h deleted file mode 100755 index 235349e1..00000000 --- a/source/vsearch_src/arch.h +++ /dev/null @@ -1,62 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -unsigned long arch_get_memused(); -unsigned long arch_get_memtotal(); diff --git a/source/vsearch_src/bitmap.cc b/source/vsearch_src/bitmap.cc deleted file mode 100755 index b8e837cb..00000000 --- a/source/vsearch_src/bitmap.cc +++ /dev/null @@ -1,76 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -bitmap_t * bitmap_init(unsigned int size) -{ - bitmap_t * b = (bitmap_t*) xmalloc(sizeof(bitmap_t)); - b->size = size; - b->bitmap = (unsigned char *) xmalloc((size+7)/8); - return b; -} - -void bitmap_free(bitmap_t* b) -{ - if (b->bitmap) - free(b->bitmap); - free(b); -} diff --git a/source/vsearch_src/bitmap.h b/source/vsearch_src/bitmap.h deleted file mode 100755 index d3275b70..00000000 --- a/source/vsearch_src/bitmap.h +++ /dev/null @@ -1,99 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -typedef struct bitmap_s -{ - unsigned char * bitmap; /* the actual bitmap */ - unsigned int size; /* size in bits */ -} bitmap_t; - -bitmap_t * bitmap_init(unsigned int size); - -void bitmap_free(bitmap_t* b); - -inline unsigned char bitmap_get(bitmap_t * b, unsigned int x) -{ - return (b->bitmap[x >> 3] >> (x & 7)) & 1; -} - -inline void bitmap_reset_all(bitmap_t * b) -{ - memset(b->bitmap, 0, (b->size+7)/8); -} - -inline void bitmap_set_all(bitmap_t * b) -{ - memset(b->bitmap, 255, (b->size+7)/8); -} - -inline void bitmap_reset(bitmap_t * b, unsigned int x) -{ - b->bitmap[x >> 3] &= ~ (1 << (x & 7)); -} - -inline void bitmap_set(bitmap_t * b, unsigned int x) -{ - b->bitmap[x >> 3] |= 1 << (x & 7); -} - -inline void bitmap_flip(bitmap_t * b, unsigned int x) -{ - b->bitmap[x >> 3] ^= 1 << (x & 7); -} diff --git a/source/vsearch_src/chimera.cc b/source/vsearch_src/chimera.cc deleted file mode 100755 index a3adf6c4..00000000 --- a/source/vsearch_src/chimera.cc +++ /dev/null @@ -1,1570 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* - This code implements the method described in this paper: - - Robert C. Edgar, Brian J. Haas, Jose C. Clemente, Christopher Quince - and Rob Knight (2011) - UCHIME improves sensitivity and speed of chimera detection - Bioinformatics, 27, 16, 2194-2200 - http://dx.doi.org/10.1093/bioinformatics/btr381 -*/ - -/* global constants/data, no need for synchronization */ -const int parts = 4; -const int few = 4; -const int maxcandidates = few * parts; -const int rejects = 16; -const double chimera_id = 0.55; -static int tophits; -static fasta_handle query_fasta_h; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - -/* mutexes and global data protected by mutex */ -static pthread_attr_t attr; -static pthread_t * pthread; -static pthread_mutex_t mutex_input; -static pthread_mutex_t mutex_output; - -#endif - -static unsigned int seqno = 0; -static unsigned long progress = 0; -static int chimera_count = 0; -static int nonchimera_count = 0; -static FILE * fp_chimeras = 0; -static FILE * fp_nonchimeras = 0; -static FILE * fp_uchimealns = 0; -static FILE * fp_uchimeout = 0; -static FILE * fp_borderline = 0; - -/* information for each query sequence to be checked */ -struct chimera_info_s -{ - int query_alloc; /* the longest query sequence allocated memory for */ - int head_alloc; /* the longest header allocated memory for */ - - int query_no; - char * query_head; - int query_head_len; - int query_size; - char * query_seq; - int query_len; - - struct searchinfo_s si[parts]; - - unsigned int cand_list[maxcandidates]; - int cand_count; - - struct s16info_s * s; - CELL snwscore[maxcandidates]; - unsigned short snwalignmentlength[maxcandidates]; - unsigned short snwmatches[maxcandidates]; - unsigned short snwmismatches[maxcandidates]; - unsigned short snwgaps[maxcandidates]; - long nwscore[maxcandidates]; - long nwalignmentlength[maxcandidates]; - long nwmatches[maxcandidates]; - long nwmismatches[maxcandidates]; - long nwgaps[maxcandidates]; - char * nwcigar[maxcandidates]; - - int match_size; - int * match; - int * smooth; - int * maxsmooth; - - int best_parents[2]; - - int best_target; - char * best_cigar; - - int * maxi; - char * paln[2]; - char * qaln; - char * diffs; - char * votes; - char * model; - char * ignore; - - struct hit * all_hits; -}; - -static struct chimera_info_s * cia; - -void realloc_arrays(struct chimera_info_s * ci) -{ - int maxhlen = ci->query_head_len; - if (maxhlen > ci->head_alloc) - { - ci->head_alloc = maxhlen; - ci->query_head = (char*) xrealloc(ci->query_head, maxhlen + 1); - } - - /* realloc arrays based on query length */ - - int maxqlen = ci->query_len; - if (maxqlen > ci->query_alloc) - { - ci->query_alloc = maxqlen; - - ci->query_seq = (char*) xrealloc(ci->query_seq, maxqlen + 1); - - for(int i=0; i < parts; i++) - { - int maxpartlen = (maxqlen + parts - 1) / parts; - ci->si[i].qsequence = (char*) xrealloc(ci->si[i].qsequence, - maxpartlen + 1); - } - - ci->maxi = (int *) xrealloc(ci->maxi, (maxqlen + 1) * sizeof(int)); - ci->maxsmooth = (int*) xrealloc(ci->maxsmooth, maxqlen * sizeof(int)); - ci->match = (int*) xrealloc(ci->match, - maxcandidates * maxqlen * sizeof(int)); - ci->smooth = (int*) xrealloc(ci->smooth, - maxcandidates * maxqlen * sizeof(int)); - - int maxalnlen = maxqlen + 2 * db_getlongestsequence(); - ci->paln[0] = (char*) xrealloc(ci->paln[0], maxalnlen+1); - ci->paln[1] = (char*) xrealloc(ci->paln[1], maxalnlen+1); - ci->qaln = (char*) xrealloc(ci->qaln, maxalnlen+1); - ci->diffs = (char*) xrealloc(ci->diffs, maxalnlen+1); - ci->votes = (char*) xrealloc(ci->votes, maxalnlen+1); - ci->model = (char*) xrealloc(ci->model, maxalnlen+1); - ci->ignore = (char*) xrealloc(ci->ignore, maxalnlen+1); - } -} - - -int find_best_parents(struct chimera_info_s * ci) -{ - ci->best_parents[0] = -1; - ci->best_parents[1] = -1; - - /* find the positions with matches for each potential parent */ - - char * qseq = ci->query_seq; - - memset(ci->match, 0, ci->cand_count * ci->query_len * sizeof(int)); - - for(int i=0; i < ci->cand_count; i++) - { - char * tseq = db_getsequence(ci->cand_list[i]); - - int qpos = 0; - int tpos = 0; - - char * p = ci->nwcigar[i]; - char * e = p + strlen(p); - - while (p < e) - { - int run = 1; - int scanlength = 0; - sscanf(p, "%d%n", &run, &scanlength); - p += scanlength; - char op = *p++; - switch (op) - { - case 'M': - for(int k=0; kmatch[i * ci->query_len + qpos] = 1; - qpos++; - tpos++; - } - break; - - case 'I': - tpos += run; - break; - - case 'D': - qpos += run; - break; - } - } - } - - /* Compute smoothed identity score in a window for each candidate, */ - /* and record max smoothed score for each position among candidates. */ - - memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); - - const int window = 32; - - for(int i = 0; i < ci->cand_count; i++) - { - int sum = 0; - for(int qpos = 0; qpos < ci->query_len; qpos++) - { - int z = i * ci->query_len + qpos; - sum += ci->match[z]; - if (qpos >= window) - sum -= ci->match[z-window]; - if (qpos >= window-1) - { - ci->smooth[z] = sum; - if (ci->smooth[z] > ci->maxsmooth[qpos]) - ci->maxsmooth[qpos] = ci->smooth[z]; - } - } - } - - /* find first parent */ - - int wins[ci->cand_count]; - - memset(wins, 0, ci->cand_count * sizeof(int)); - - for(int qpos = window-1; qpos < ci->query_len; qpos++) - { - if (ci->maxsmooth[qpos] != 0) - for(int i=0; i < ci->cand_count; i++) - { - int z = i * ci->query_len + qpos; - if (ci->smooth[z] == ci->maxsmooth[qpos]) - wins[i]++; - } - } - - int best1_w = -1; - int best1_i = -1; - int best2_w = -1; - int best2_i = -1; - - for(int i=0; i < ci->cand_count; i++) - { - int w = wins[i]; - if (w > best1_w) - { - best1_w = w; - best1_i = i; - } - } - - if (best1_w >= 0) - { - /* find second parent */ - - /* wipe out matches in positions covered by first parent */ - - for(int qpos = window - 1; qpos < ci->query_len; qpos++) - { - int z = best1_i * ci->query_len + qpos; - if (ci->smooth[z] == ci->maxsmooth[qpos]) - { - for(int i = qpos + 1 - window; i <= qpos; i++) - for(int j = 0; j < ci->cand_count; j++) - ci->match[j * ci->query_len + i] = 0; - } - } - - /* - recompute smoothed identity over window, and record max smoothed - score for each position among remaining candidates - */ - - memset(ci->maxsmooth, 0, ci->query_len * sizeof(int)); - - for(int i = 0; i < ci->cand_count; i++) - { - if (i != best1_i) - { - int sum = 0; - for(int qpos = 0; qpos < ci->query_len; qpos++) - { - int z = i * ci->query_len + qpos; - sum += ci->match[z]; - if (qpos >= window) - sum -= ci->match[z-window]; - if (qpos >= window-1) - { - ci->smooth[z] = sum; - if (ci->smooth[z] > ci->maxsmooth[qpos]) - ci->maxsmooth[qpos] = ci->smooth[z]; - } - } - } - } - - /* find second parent */ - - memset(wins, 0, ci->cand_count * sizeof(int)); - - for(int qpos = window-1; qpos < ci->query_len; qpos++) - { - if (ci->maxsmooth[qpos] != 0) - for(int i=0; i < ci->cand_count; i++) - if (i != best1_i) - { - int z = i * ci->query_len + qpos; - if (ci->smooth[z] == ci->maxsmooth[qpos]) - wins[i]++; - } - } - - for(int i=0; i < ci->cand_count; i++) - { - int w = wins[i]; - if (w > best2_w) - { - best2_w = w; - best2_i = i; - } - } - } - - ci->best_parents[0] = best1_i; - ci->best_parents[1] = best2_i; - - return (best1_w >= 0) && (best2_w >= 0); -} - -int eval_parents(struct chimera_info_s * ci) -{ - int status = 1; - - /* create msa */ - - /* find max insertions in front of each position in the query sequence */ - memset(ci->maxi, 0, (ci->query_len + 1) * sizeof(int)); - - for(int j=0; j<2; j++) - { - char * p = ci->nwcigar[ci->best_parents[j]]; - char * e = p + strlen(p); - int pos = 0; - while (p < e) - { - int run = 1; - int scanlength = 0; - sscanf(p, "%d%n", &run, &scanlength); - p += scanlength; - char op = *p++; - switch (op) - { - case 'M': - case 'D': - pos += run; - break; - - case 'I': - if (run > ci->maxi[pos]) - ci->maxi[pos] = run; - break; - } - } - } - - /* find total alignment length */ - int alnlen = 0; - for(int i=0; i < ci->query_len+1; i++) - alnlen += ci->maxi[i]; - alnlen += ci->query_len; - - /* fill in alignment string for query */ - - char * q = ci->qaln; - int qpos = 0; - for (int i=0; i < ci->query_len; i++) - { - for (int j=0; j < ci->maxi[i]; j++) - *q++ = '-'; - *q++ = chrmap_upcase[(int)(ci->query_seq[qpos++])]; - } - for (int j=0; j < ci->maxi[ci->query_len]; j++) - *q++ = '-'; - *q = 0; - - /* fill in alignment strings for the 2 parents */ - - for(int j=0; j<2; j++) - { - int cand = ci->best_parents[j]; - int target_seqno = ci->cand_list[cand]; - char * target_seq = db_getsequence(target_seqno); - - int inserted = 0; - qpos = 0; - int tpos = 0; - - char * t = ci->paln[j]; - - char * p = ci->nwcigar[cand]; - char * e = p + strlen(p); - while (p < e) - { - int run = 1; - int scanlength = 0; - sscanf(p, "%d%n", &run, &scanlength); - p += scanlength; - char op = *p++; - - if (op == 'I') - { - for(int x=0; x < ci->maxi[qpos]; x++) - { - if (x < run) - *t++ = chrmap_upcase[(int)(target_seq[tpos++])]; - else - *t++ = '-'; - } - inserted = 1; - } - else - { - for(int x=0; x < run; x++) - { - if (!inserted) - for(int y=0; y < ci->maxi[qpos]; y++) - *t++ = '-'; - - if (op == 'M') - *t++ = chrmap_upcase[(int)(target_seq[tpos++])]; - else - *t++ = '-'; - - qpos++; - inserted = 0; - } - } - } - - /* add any gaps at the end */ - - if (!inserted) - for(int x=0; x < ci->maxi[qpos]; x++) - *t++ = '-'; - - /* end of sequence string */ - *t = 0; - } - - memset(ci->ignore, 0, alnlen); - - for(int i = 0; i < alnlen; i++) - { - char qsym = chrmap_4bit[(int)(ci->qaln [i])]; - char p1sym = chrmap_4bit[(int)(ci->paln[0][i])]; - char p2sym = chrmap_4bit[(int)(ci->paln[1][i])]; - - /* mark positions to ignore in voting */ - - /* ignore gap positions and those next to the gap */ - if ((!qsym) || (!p1sym) || (!p2sym)) - { - ci->ignore[i] = 1; - if (i>0) - ci->ignore[i-1] = 1; - if (iignore[i+1] = 1; - } - - /* ignore ambigous symbols */ - if ((qsym>4) || (p1sym>4) || (p2sym>4)) - ci->ignore[i] = 1; - - /* lower case parent symbols that differ from query */ - - if (p1sym && (p1sym != qsym)) - ci->paln[0][i] = tolower(ci->paln[0][i]); - - if (p2sym && (p2sym != qsym)) - ci->paln[1][i] = tolower(ci->paln[1][i]); - - /* compute diffs */ - - char diff; - - if (qsym && p1sym && p2sym) - { - if (p1sym == p2sym) - { - if (qsym == p1sym) - diff = ' '; - else - diff = 'N'; - } - else - { - if (qsym == p1sym) - diff = 'A'; - else if (qsym == p2sym) - diff = 'B'; - else - diff = '?'; - } - } - else - diff = ' '; - - ci->diffs[i] = diff; - } - - ci->diffs[alnlen] = 0; - - /* compute score */ - - int sumA = 0; - int sumB = 0; - int sumN = 0; - - for (int i = 0; i < alnlen; i++) - if (!ci->ignore[i]) - { - char diff = ci->diffs[i]; - - if (diff == 'A') - sumA++; - else if (diff == 'B') - sumB++; - else if (diff != ' ') - sumN++; - } - - int left_n = 0; - int left_a = 0; - int left_y = 0; - int right_n = sumA; - int right_a = sumN; - int right_y = sumB; - - double best_h = -1; - int best_i = -1; - int best_reverse = 0; - - int best_left_y = 0; - int best_right_y = 0; - int best_left_n = 0; - int best_right_n = 0; - int best_left_a = 0; - int best_right_a = 0; - - for (int i=0; iignore[i]) - { - char diff = ci->diffs[i]; - if (diff != ' ') - { - if (diff == 'A') - { - left_y++; - right_n--; - } - else if (diff == 'B') - { - left_n++; - right_y--; - } - else - { - left_a++; - right_a--; - } - - double left_h, right_h, h; - - if ((left_y > left_n) && (right_y > right_n)) - { - left_h = left_y / (opt_xn * (left_n + opt_dn) + left_a); - right_h = right_y / (opt_xn * (right_n + opt_dn) + right_a); - h = left_h * right_h; - - if (h > best_h) - { - best_reverse = 0; - best_h = h; - best_i = i; - best_left_n = left_n; - best_left_y = left_y; - best_left_a = left_a; - best_right_n = right_n; - best_right_y = right_y; - best_right_a = right_a; - } - } - else if ((left_n > left_y) && (right_n > right_y)) - { - /* swap left/right and yes/no */ - - left_h = left_n / (opt_xn * (left_y + opt_dn) + left_a); - right_h = right_n / (opt_xn * (right_y + opt_dn) + right_a); - h = left_h * right_h; - - if (h > best_h) - { - best_reverse = 1; - best_h = h; - best_i = i; - best_left_n = left_y; - best_left_y = left_n; - best_left_a = left_a; - best_right_n = right_y; - best_right_y = right_n; - best_right_a = right_a; - } - } - } - } - } - - if (best_h >= 0.0) - { - status = 2; - - /* flip A and B if necessary */ - - if (best_reverse) - for(int i = 0; i < alnlen; i++) - { - char diff = ci->diffs[i]; - if (diff == 'A') - ci->diffs[i] = 'B'; - else if (diff == 'B') - ci->diffs[i] = 'A'; - } - - /* fill in votes and model */ - - for(int i = 0; i < alnlen; i++) - { - char m = i <= best_i ? 'A' : 'B'; - ci->model[i] = m; - - char v = ' '; - if (!ci->ignore[i]) - { - char d = ci->diffs[i]; - - if ((d == 'A') || (d == 'B')) - { - if (d == m) - v = '+'; - else - v = '!'; - } - else if ((d == 'N') || (d == '?')) - { - v = '0'; - } - } - ci->votes[i] = v; - - /* lower case diffs for no votes */ - if (v == '!') - ci->diffs[i] = tolower(ci->diffs[i]); - } - - /* fill in crossover region */ - - for(int i = best_i + 1; i < alnlen; i++) - if ((ci->diffs[i] == ' ') || (ci->diffs[i] == 'A')) - ci->model[i] = 'x'; - else - break; - - ci->votes[alnlen] = 0; - ci->model[alnlen] = 0; - - /* count matches */ - - int index_a = best_reverse ? 1 : 0; - int index_b = best_reverse ? 0 : 1; - - int match_QA = 0; - int match_QB = 0; - int match_AB = 0; - int match_QM = 0; - int cols = 0; - - for(int i = 0; i < alnlen; i++) - { - if (! ci->ignore[i]) - { - cols++; - - char qsym = chrmap_4bit[(int)(ci->qaln[i])]; - char asym = chrmap_4bit[(int)(ci->paln[index_a][i])]; - char bsym = chrmap_4bit[(int)(ci->paln[index_b][i])]; - char msym = i <= best_i ? asym : bsym; - - if (qsym == asym) - match_QA++; - - if (qsym == bsym) - match_QB++; - - if (asym == bsym) - match_AB++; - - if (qsym == msym) - match_QM++; - } - } - - int seqno_a = ci->cand_list[ci->best_parents[index_a]]; - int seqno_b = ci->cand_list[ci->best_parents[index_b]]; - - double QA = 100.0 * match_QA / cols; - double QB = 100.0 * match_QB / cols; - double AB = 100.0 * match_AB / cols; - double QT = MAX(QA, QB); - double QM = 100.0 * match_QM / cols; - double divdiff = QM - QT; - double divfrac = 100.0 * divdiff / QT; - - int sumL = best_left_n + best_left_a + best_left_y; - int sumR = best_right_n + best_right_a + best_right_y; - - if (best_h >= opt_minh) - { - status = 3; - if ((divdiff >= opt_mindiv) && - (sumL >= opt_mindiffs) && - (sumR >= opt_mindiffs)) - status = 4; - } - - /* print alignment */ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&mutex_output); -#endif - if (opt_uchimealns && (status == 4)) - { - fprintf(fp_uchimealns, "\n"); - fprintf(fp_uchimealns, "----------------------------------------" - "--------------------------------\n"); - fprintf(fp_uchimealns, "Query (%5d nt) %s\n", - ci->query_len, ci->query_head); - fprintf(fp_uchimealns, "ParentA (%5lu nt) %s\n", - db_getsequencelen(seqno_a), - db_getheader(seqno_a)); - fprintf(fp_uchimealns, "ParentB (%5lu nt) %s\n", - db_getsequencelen(seqno_b), - db_getheader(seqno_b)); - fprintf(fp_uchimealns, "\n"); - - int width = opt_alignwidth > 0 ? opt_alignwidth : alnlen; - qpos = 0; - int p1pos = 0; - int p2pos = 0; - int rest = alnlen; - - for(int i = 0; i < alnlen; i += width) - { - /* count non-gap symbols on current line */ - - int qnt, p1nt, p2nt; - qnt = p1nt = p2nt = 0; - - int w = MIN(rest,width); - - for(int j=0; jqaln[i+j] != '-') - qnt++; - if (ci->paln[0][i+j] != '-') - p1nt++; - if (ci->paln[1][i+j] != '-') - p2nt++; - } - - if (! best_reverse) - { - fprintf(fp_uchimealns, "A %5d %.*s %d\n", - p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); - fprintf(fp_uchimealns, "Q %5d %.*s %d\n", - qpos+1, w, ci->qaln+i, qpos+qnt); - fprintf(fp_uchimealns, "B %5d %.*s %d\n", - p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); - } - else - { - fprintf(fp_uchimealns, "A %5d %.*s %d\n", - p2pos+1, w, ci->paln[1]+i, p2pos+p2nt); - fprintf(fp_uchimealns, "Q %5d %.*s %d\n", - qpos+1, w, ci->qaln+i, qpos+qnt); - fprintf(fp_uchimealns, "B %5d %.*s %d\n", - p1pos+1, w, ci->paln[0]+i, p1pos+p1nt); - } - - fprintf(fp_uchimealns, "Diffs %.*s\n", w, ci->diffs+i); - fprintf(fp_uchimealns, "Votes %.*s\n", w, ci->votes+i); - fprintf(fp_uchimealns, "Model %.*s\n", w, ci->model+i); - fprintf(fp_uchimealns, "\n"); - - qpos += qnt; - p1pos += p1nt; - p2pos += p2nt; - rest -= width; - } - - fprintf(fp_uchimealns, "Ids. QA %.1f%%, QB %.1f%%, AB %.1f%%, " - "QModel %.1f%%, Div. %+.1f%%\n", - QA, QB, AB, QM, divfrac); - - fprintf(fp_uchimealns, "Diffs Left %d: N %d, A %d, Y %d (%.1f%%); " - "Right %d: N %d, A %d, Y %d (%.1f%%), Score %.4f\n", - sumL, best_left_n, best_left_a, best_left_y, - 100.0 * best_left_y / sumL, - sumR, best_right_n, best_right_a, best_right_y, - 100.0 * best_right_y / sumR, - best_h); - } - - if (opt_uchimeout) - { - if (opt_uchimeout5) - { - fprintf(fp_uchimeout, - "%.4f\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" - "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", - best_h, - ci->query_head, - db_getheader(seqno_a), - db_getheader(seqno_b), - QM, - QA, - QB, - AB, - QT, - best_left_y, - best_left_n, - best_left_a, - best_right_y, - best_right_n, - best_right_a, - divdiff, - status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); - } - else - { - fprintf(fp_uchimeout, - "%.4f\t%s\t%s\t%s\t%s\t%.1f\t%.1f\t%.1f\t%.1f\t%.1f\t" - "%d\t%d\t%d\t%d\t%d\t%d\t%.1f\t%c\n", - best_h, - ci->query_head, - db_getheader(seqno_a), - db_getheader(seqno_b), - db_getheader(QA >= QB ? seqno_a : seqno_b), - QM, - QA, - QB, - AB, - QT, - best_left_y, - best_left_n, - best_left_a, - best_right_y, - best_right_n, - best_right_a, - divdiff, - status == 4 ? 'Y' : (status == 2 ? 'N' : '?')); - } - } -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_output); -#endif - } - - return status; -} - -/* - new chimeric status: - 0: no parents, non-chimeric - 1: score < 0 (no alignment), non-chimeric - 2: score < minh, non-chimeric - 3: score >= minh, suspicious - 4: score >= minh && (divdiff >= opt_mindiv) && ..., chimeric -*/ - -void query_init(struct searchinfo_s * si) -{ - si->qsequence = 0; - si->kmers = 0; - si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); - si->kmers = (count_t *) xmalloc(db_getsequencecount() * - sizeof(count_t) + 32); - si->hit_count = 0; - si->uh = unique_init(); - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - si->nw = nw_init(); - si->m = minheap_init(tophits); -} - -void query_exit(struct searchinfo_s * si) -{ - search16_exit(si->s); - unique_exit(si->uh); - minheap_exit(si->m); - nw_exit(si->nw); - - if (si->qsequence) - free(si->qsequence); - if (si->hits) - free(si->hits); - if (si->kmers) - free(si->kmers); -} - -void partition_query(struct chimera_info_s * ci) -{ - int rest = ci->query_len; - char * p = ci->query_seq; - for (int i=0; isi + i; - - si->query_no = ci->query_no; - si->strand = 0; - si->qsize = ci->query_size; - si->query_head_len = ci->query_head_len; - si->query_head = ci->query_head; - si->qseqlen = len; - strncpy(si->qsequence, p, len); - si->qsequence[len] = 0; - - rest -= len; - p += len; - } -} - -void chimera_thread_init(struct chimera_info_s * ci) -{ - ci->query_alloc = 0; - ci->head_alloc = 0; - ci->query_head = 0; - ci->query_seq = 0; - ci->maxi = 0; - ci->maxsmooth = 0; - ci->match = 0; - ci->smooth = 0; - ci->paln[0] = 0; - ci->paln[1] = 0; - ci->qaln = 0; - ci->diffs = 0; - ci->votes = 0; - ci->model = 0; - ci->ignore = 0; - - for(int i = 0; i < parts; i++) - query_init(ci->si + i); - - ci->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); -} - -void chimera_thread_exit(struct chimera_info_s * ci) -{ - search16_exit(ci->s); - - for(int i = 0; i < parts; i++) - query_exit(ci->si + i); - - if (ci->maxsmooth) - free(ci->maxsmooth); - if (ci->match) - free(ci->match); - if (ci->smooth) - free(ci->smooth); - if (ci->diffs) - free(ci->diffs); - if (ci->votes) - free(ci->votes); - if (ci->model) - free(ci->model); - if (ci->ignore) - free(ci->ignore); - if (ci->maxi) - free(ci->maxi); - if (ci->qaln) - free(ci->qaln); - if (ci->paln[0]) - free(ci->paln[0]); - if (ci->paln[1]) - free(ci->paln[1]); - - if (ci->query_seq) - free(ci->query_seq); - if (ci->query_head) - free(ci->query_head); -} - -unsigned long chimera_thread_core(struct chimera_info_s * ci) -{ - chimera_thread_init(ci); - - struct hit * allhits_list = (struct hit *) xmalloc(maxcandidates * - sizeof(struct hit)); - - LinearMemoryAligner lma; - - long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); - - lma.set_parameters(scorematrix, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - while(1) - { - /* get next sequence */ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&mutex_input); -#endif - - if (opt_uchime_ref) - { - if (fasta_next(query_fasta_h, ! opt_notrunclabels, - chrmap_no_change)) - { - ci->query_head_len = fasta_get_header_length(query_fasta_h); - ci->query_len = fasta_get_sequence_length(query_fasta_h); - ci->query_no = fasta_get_seqno(query_fasta_h); - ci->query_size = fasta_get_abundance(query_fasta_h); - - /* if necessary expand memory for arrays based on query length */ - realloc_arrays(ci); - - /* copy the data locally (query seq, head) */ - strcpy(ci->query_head, fasta_get_header(query_fasta_h)); - strcpy(ci->query_seq, fasta_get_sequence(query_fasta_h)); - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_input); -#endif - break; /* end while loop */ - } - } - else - { - if (seqno < db_getsequencecount()) - { - ci->query_no = seqno; - ci->query_head_len = db_getheaderlen(seqno); - ci->query_len = db_getsequencelen(seqno); - ci->query_size = db_getabundance(seqno); - - /* if necessary expand memory for arrays based on query length */ - realloc_arrays(ci); - - strcpy(ci->query_head, db_getheader(seqno)); - strcpy(ci->query_seq, db_getsequence(seqno)); - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_input); -#endif - break; /* end while loop */ - } - } - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_input); -#endif - - - - int status = 0; - - /* partition query */ - partition_query(ci); - - /* perform searches and collect candidate parents */ - ci->cand_count = 0; - int allhits_count = 0; - - if (ci->query_len >= parts) - for (int i=0; isi+i, opt_qmask); - search_joinhits(ci->si+i, 0, & hits, & hit_count); - for(int j=0; jcand_count; k++) - if (ci->cand_list[k] == target) - break; - - if (k == ci->cand_count) - ci->cand_list[ci->cand_count++] = target; - - /* deallocate cigar */ - if (allhits_list[i].nwalignment) - free(allhits_list[i].nwalignment); - } - - - /* align full query to each candidate */ - - search16_qprep(ci->s, ci->query_seq, ci->query_len); - - search16(ci->s, - ci->cand_count, - ci->cand_list, - ci->snwscore, - ci->snwalignmentlength, - ci->snwmatches, - ci->snwmismatches, - ci->snwgaps, - ci->nwcigar); - - for(int i=0; i < ci->cand_count; i++) - { - long target = ci->cand_list[i]; - long nwscore = ci->snwscore[i]; - char * nwcigar; - long nwalignmentlength; - long nwmatches; - long nwmismatches; - long nwgaps; - - if (nwscore == SHRT_MAX) - { - /* In case the SIMD aligner cannot align, - perform a new alignment with the - linear memory aligner */ - - char * tseq = db_getsequence(target); - long tseqlen = db_getsequencelen(target); - - if (ci->nwcigar[i]) - free(ci->nwcigar[i]); - - nwcigar = xstrdup(lma.align(ci->query_seq, - tseq, - ci->query_len, - tseqlen)); - lma.alignstats(nwcigar, - ci->query_seq, - tseq, - & nwscore, - & nwalignmentlength, - & nwmatches, - & nwmismatches, - & nwgaps); - - ci->nwcigar[i] = nwcigar; - ci->nwscore[i] = nwscore; - ci->nwalignmentlength[i] = nwalignmentlength; - ci->nwmatches[i] = nwmatches; - ci->nwmismatches[i] = nwmismatches; - ci->nwgaps[i] = nwgaps; - } - else - { - ci->nwscore[i] = ci->snwscore[i]; - ci->nwalignmentlength[i] = ci->snwalignmentlength[i]; - ci->nwmatches[i] = ci->snwmatches[i]; - ci->nwmismatches[i] = ci->snwmismatches[i]; - ci->nwgaps[i] = ci->snwgaps[i]; - } - } - - - /* find the best pair of parents, then compute score for them */ - - if (find_best_parents(ci)) - status = eval_parents(ci); - else - status = 0; - - /* output results */ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&mutex_output); -#endif - if (status == 4) - { - chimera_count++; - - if (opt_chimeras) - { - fasta_print(fp_chimeras, - ci->query_head, - ci->query_seq, - ci->query_len); - } - } - - if (status == 3) - { - if (opt_borderline) - { - fasta_print(fp_borderline, - ci->query_head, - ci->query_seq, - ci->query_len); - } - } - - if (status < 3) - { - nonchimera_count++; - - /* output no parents, no chimeras */ - if ((status < 2) && opt_uchimeout) - { - if (opt_uchimeout5) - fprintf(fp_uchimeout, - "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*" - "\t0\t0\t0\t0\t0\t0\t*\tN\n", - ci->query_head); - else - fprintf(fp_uchimeout, - "0.0000\t%s\t*\t*\t*\t*\t*\t*\t*\t*" - "\t0\t0\t0\t0\t0\t0\t*\tN\n", - ci->query_head); - } - - /* uchime_denovo: add non-chimeras to db */ - if (opt_uchime_denovo) - dbindex_addsequence(seqno, opt_qmask); - - if (opt_nonchimeras) - { - fasta_print_relabel(fp_nonchimeras, - ci->query_seq, - ci->query_len, - ci->query_head, - ci->query_head_len, - ci->query_size, - nonchimera_count); - } - } - - for (int i=0; i < ci->cand_count; i++) - if (ci->nwcigar[i]) - free(ci->nwcigar[i]); - - if (opt_uchime_ref) - progress = fasta_get_position(query_fasta_h); - else - progress += db_getsequencelen(seqno); - - progress_update(progress); - - seqno++; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_output); -#endif - } - - if (allhits_list) - free(allhits_list); - - chimera_thread_exit(ci); - - free(scorematrix); - - return 0; -} - -void * chimera_thread_worker(void * vp) -{ - return (void *) (chimera_thread_core(cia + (intptr_t) vp)); -} - -void chimera_threads_run() -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* create worker threads */ - for(long t=0; t, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void chimera(); diff --git a/source/vsearch_src/cityhash/city.cc b/source/vsearch_src/cityhash/city.cc deleted file mode 100644 index 29fd4a0f..00000000 --- a/source/vsearch_src/cityhash/city.cc +++ /dev/null @@ -1,628 +0,0 @@ -// Copyright (c) 2011 Google, Inc. -// -// Permission is hereby granted, free of charge, to any person obtaining a copy -// of this software and associated documentation files (the "Software"), to deal -// in the Software without restriction, including without limitation the rights -// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -// copies of the Software, and to permit persons to whom the Software is -// furnished to do so, subject to the following conditions: -// -// The above copyright notice and this permission notice shall be included in -// all copies or substantial portions of the Software. -// -// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN -// THE SOFTWARE. -// -// CityHash, by Geoff Pike and Jyrki Alakuijala -// -// This file provides CityHash64() and related functions. -// -// It's probably possible to create even faster hash functions by -// writing a program that systematically explores some of the space of -// possible hash functions, by using SIMD instructions, or by -// compromising on hash quality. - - -#include -//#include "config.h" -#include -#include // for memcpy and memset - -using namespace std; - -static uint64 UNALIGNED_LOAD64(const char *p) { - uint64 result; - memcpy(&result, p, sizeof(result)); - return result; -} - -static uint32 UNALIGNED_LOAD32(const char *p) { - uint32 result; - memcpy(&result, p, sizeof(result)); - return result; -} - -#ifdef _MSC_VER - -#include -#define bswap_32(x) _byteswap_ulong(x) -#define bswap_64(x) _byteswap_uint64(x) - -#elif defined(__APPLE__) - -// Mac OS X / Darwin features -#include -#define bswap_32(x) OSSwapInt32(x) -#define bswap_64(x) OSSwapInt64(x) - -#elif defined(__NetBSD__) - -#include -#include -#if defined(__BSWAP_RENAME) && !defined(__bswap_32) -#define bswap_32(x) bswap32(x) -#define bswap_64(x) bswap64(x) -#endif - -#else - -#include - -#endif - -#ifdef WORDS_BIGENDIAN -#define uint32_in_expected_order(x) (bswap_32(x)) -#define uint64_in_expected_order(x) (bswap_64(x)) -#else -#define uint32_in_expected_order(x) (x) -#define uint64_in_expected_order(x) (x) -#endif - -#if !defined(LIKELY) -#if HAVE_BUILTIN_EXPECT -#define LIKELY(x) (__builtin_expect(!!(x), 1)) -#else -#define LIKELY(x) (x) -#endif -#endif - -static uint64 Fetch64(const char *p) { - return uint64_in_expected_order(UNALIGNED_LOAD64(p)); -} - -static uint32 Fetch32(const char *p) { - return uint32_in_expected_order(UNALIGNED_LOAD32(p)); -} - -// Some primes between 2^63 and 2^64 for various uses. -static const uint64 k0 = 0xc3a5c85c97cb3127ULL; -static const uint64 k1 = 0xb492b66fbe98f273ULL; -static const uint64 k2 = 0x9ae16a3b2f90404fULL; - -// Magic numbers for 32-bit hashing. Copied from Murmur3. -static const uint32_t c1 = 0xcc9e2d51; -static const uint32_t c2 = 0x1b873593; - -// A 32-bit to 32-bit integer hash copied from Murmur3. -static uint32 fmix(uint32 h) -{ - h ^= h >> 16; - h *= 0x85ebca6b; - h ^= h >> 13; - h *= 0xc2b2ae35; - h ^= h >> 16; - return h; -} - -static uint32 Rotate32(uint32 val, int shift) { - // Avoid shifting by 32: doing so yields an undefined result. - return shift == 0 ? val : ((val >> shift) | (val << (32 - shift))); -} - -#undef PERMUTE3 -#define PERMUTE3(a, b, c) do { std::swap(a, b); std::swap(a, c); } while (0) - -static uint32 Mur(uint32 a, uint32 h) { - // Helper from Murmur3 for combining two 32-bit values. - a *= c1; - a = Rotate32(a, 17); - a *= c2; - h ^= a; - h = Rotate32(h, 19); - return h * 5 + 0xe6546b64; -} - -static uint32 Hash32Len13to24(const char *s, size_t len) { - uint32 a = Fetch32(s - 4 + (len >> 1)); - uint32 b = Fetch32(s + 4); - uint32 c = Fetch32(s + len - 8); - uint32 d = Fetch32(s + (len >> 1)); - uint32 e = Fetch32(s); - uint32 f = Fetch32(s + len - 4); - uint32 h = len; - - return fmix(Mur(f, Mur(e, Mur(d, Mur(c, Mur(b, Mur(a, h))))))); -} - -static uint32 Hash32Len0to4(const char *s, size_t len) { - uint32 b = 0; - uint32 c = 9; - for (int i = 0; i < len; i++) { - signed char v = s[i]; - b = b * c1 + v; - c ^= b; - } - return fmix(Mur(b, Mur(len, c))); -} - -static uint32 Hash32Len5to12(const char *s, size_t len) { - uint32 a = len, b = len * 5, c = 9, d = b; - a += Fetch32(s); - b += Fetch32(s + len - 4); - c += Fetch32(s + ((len >> 1) & 4)); - return fmix(Mur(c, Mur(b, Mur(a, d)))); -} - -uint32 CityHash32(const char *s, size_t len) { - if (len <= 24) { - return len <= 12 ? - (len <= 4 ? Hash32Len0to4(s, len) : Hash32Len5to12(s, len)) : - Hash32Len13to24(s, len); - } - - // len > 24 - uint32 h = len, g = c1 * len, f = g; - uint32 a0 = Rotate32(Fetch32(s + len - 4) * c1, 17) * c2; - uint32 a1 = Rotate32(Fetch32(s + len - 8) * c1, 17) * c2; - uint32 a2 = Rotate32(Fetch32(s + len - 16) * c1, 17) * c2; - uint32 a3 = Rotate32(Fetch32(s + len - 12) * c1, 17) * c2; - uint32 a4 = Rotate32(Fetch32(s + len - 20) * c1, 17) * c2; - h ^= a0; - h = Rotate32(h, 19); - h = h * 5 + 0xe6546b64; - h ^= a2; - h = Rotate32(h, 19); - h = h * 5 + 0xe6546b64; - g ^= a1; - g = Rotate32(g, 19); - g = g * 5 + 0xe6546b64; - g ^= a3; - g = Rotate32(g, 19); - g = g * 5 + 0xe6546b64; - f += a4; - f = Rotate32(f, 19); - f = f * 5 + 0xe6546b64; - size_t iters = (len - 1) / 20; - do { - uint32 a0 = Rotate32(Fetch32(s) * c1, 17) * c2; - uint32 a1 = Fetch32(s + 4); - uint32 a2 = Rotate32(Fetch32(s + 8) * c1, 17) * c2; - uint32 a3 = Rotate32(Fetch32(s + 12) * c1, 17) * c2; - uint32 a4 = Fetch32(s + 16); - h ^= a0; - h = Rotate32(h, 18); - h = h * 5 + 0xe6546b64; - f += a1; - f = Rotate32(f, 19); - f = f * c1; - g += a2; - g = Rotate32(g, 18); - g = g * 5 + 0xe6546b64; - h ^= a3 + a1; - h = Rotate32(h, 19); - h = h * 5 + 0xe6546b64; - g ^= a4; - g = bswap_32(g) * 5; - h += a4 * 5; - h = bswap_32(h); - f += a0; - PERMUTE3(f, h, g); - s += 20; - } while (--iters != 0); - g = Rotate32(g, 11) * c1; - g = Rotate32(g, 17) * c1; - f = Rotate32(f, 11) * c1; - f = Rotate32(f, 17) * c1; - h = Rotate32(h + g, 19); - h = h * 5 + 0xe6546b64; - h = Rotate32(h, 17) * c1; - h = Rotate32(h + f, 19); - h = h * 5 + 0xe6546b64; - h = Rotate32(h, 17) * c1; - return h; -} - -// Bitwise right rotate. Normally this will compile to a single -// instruction, especially if the shift is a manifest constant. -static uint64 Rotate(uint64 val, int shift) { - // Avoid shifting by 64: doing so yields an undefined result. - return shift == 0 ? val : ((val >> shift) | (val << (64 - shift))); -} - -static uint64 ShiftMix(uint64 val) { - return val ^ (val >> 47); -} - -static uint64 HashLen16(uint64 u, uint64 v) { - return Hash128to64(uint128(u, v)); -} - -static uint64 HashLen16(uint64 u, uint64 v, uint64 mul) { - // Murmur-inspired hashing. - uint64 a = (u ^ v) * mul; - a ^= (a >> 47); - uint64 b = (v ^ a) * mul; - b ^= (b >> 47); - b *= mul; - return b; -} - -static uint64 HashLen0to16(const char *s, size_t len) { - if (len >= 8) { - uint64 mul = k2 + len * 2; - uint64 a = Fetch64(s) + k2; - uint64 b = Fetch64(s + len - 8); - uint64 c = Rotate(b, 37) * mul + a; - uint64 d = (Rotate(a, 25) + b) * mul; - return HashLen16(c, d, mul); - } - if (len >= 4) { - uint64 mul = k2 + len * 2; - uint64 a = Fetch32(s); - return HashLen16(len + (a << 3), Fetch32(s + len - 4), mul); - } - if (len > 0) { - uint8 a = s[0]; - uint8 b = s[len >> 1]; - uint8 c = s[len - 1]; - uint32 y = static_cast(a) + (static_cast(b) << 8); - uint32 z = len + (static_cast(c) << 2); - return ShiftMix(y * k2 ^ z * k0) * k2; - } - return k2; -} - -// This probably works well for 16-byte strings as well, but it may be overkill -// in that case. -static uint64 HashLen17to32(const char *s, size_t len) { - uint64 mul = k2 + len * 2; - uint64 a = Fetch64(s) * k1; - uint64 b = Fetch64(s + 8); - uint64 c = Fetch64(s + len - 8) * mul; - uint64 d = Fetch64(s + len - 16) * k2; - return HashLen16(Rotate(a + b, 43) + Rotate(c, 30) + d, - a + Rotate(b + k2, 18) + c, mul); -} - -// Return a 16-byte hash for 48 bytes. Quick and dirty. -// Callers do best to use "random-looking" values for a and b. -static pair WeakHashLen32WithSeeds( - uint64 w, uint64 x, uint64 y, uint64 z, uint64 a, uint64 b) { - a += w; - b = Rotate(b + a + z, 21); - uint64 c = a; - a += x; - a += y; - b += Rotate(a, 44); - return make_pair(a + z, b + c); -} - -// Return a 16-byte hash for s[0] ... s[31], a, and b. Quick and dirty. -static pair WeakHashLen32WithSeeds( - const char* s, uint64 a, uint64 b) { - return WeakHashLen32WithSeeds(Fetch64(s), - Fetch64(s + 8), - Fetch64(s + 16), - Fetch64(s + 24), - a, - b); -} - -// Return an 8-byte hash for 33 to 64 bytes. -static uint64 HashLen33to64(const char *s, size_t len) { - uint64 mul = k2 + len * 2; - uint64 a = Fetch64(s) * k2; - uint64 b = Fetch64(s + 8); - uint64 c = Fetch64(s + len - 24); - uint64 d = Fetch64(s + len - 32); - uint64 e = Fetch64(s + 16) * k2; - uint64 f = Fetch64(s + 24) * 9; - uint64 g = Fetch64(s + len - 8); - uint64 h = Fetch64(s + len - 16) * mul; - uint64 u = Rotate(a + g, 43) + (Rotate(b, 30) + c) * 9; - uint64 v = ((a + g) ^ d) + f + 1; - uint64 w = bswap_64((u + v) * mul) + h; - uint64 x = Rotate(e + f, 42) + c; - uint64 y = (bswap_64((v + w) * mul) + g) * mul; - uint64 z = e + f + c; - a = bswap_64((x + z) * mul + y) + b; - b = ShiftMix((z + a) * mul + d + h) * mul; - return b + x; -} - -uint64 CityHash64(const char *s, size_t len) { - if (len <= 32) { - if (len <= 16) { - return HashLen0to16(s, len); - } else { - return HashLen17to32(s, len); - } - } else if (len <= 64) { - return HashLen33to64(s, len); - } - - // For strings over 64 bytes we hash the end first, and then as we - // loop we keep 56 bytes of state: v, w, x, y, and z. - uint64 x = Fetch64(s + len - 40); - uint64 y = Fetch64(s + len - 16) + Fetch64(s + len - 56); - uint64 z = HashLen16(Fetch64(s + len - 48) + len, Fetch64(s + len - 24)); - pair v = WeakHashLen32WithSeeds(s + len - 64, len, z); - pair w = WeakHashLen32WithSeeds(s + len - 32, y + k1, x); - x = x * k1 + Fetch64(s); - - // Decrease len to the nearest multiple of 64, and operate on 64-byte chunks. - len = (len - 1) & ~static_cast(63); - do { - x = Rotate(x + y + v.first + Fetch64(s + 8), 37) * k1; - y = Rotate(y + v.second + Fetch64(s + 48), 42) * k1; - x ^= w.second; - y += v.first + Fetch64(s + 40); - z = Rotate(z + w.first, 33) * k1; - v = WeakHashLen32WithSeeds(s, v.second * k1, x + w.first); - w = WeakHashLen32WithSeeds(s + 32, z + w.second, y + Fetch64(s + 16)); - std::swap(z, x); - s += 64; - len -= 64; - } while (len != 0); - return HashLen16(HashLen16(v.first, w.first) + ShiftMix(y) * k1 + z, - HashLen16(v.second, w.second) + x); -} - -uint64 CityHash64WithSeed(const char *s, size_t len, uint64 seed) { - return CityHash64WithSeeds(s, len, k2, seed); -} - -uint64 CityHash64WithSeeds(const char *s, size_t len, - uint64 seed0, uint64 seed1) { - return HashLen16(CityHash64(s, len) - seed0, seed1); -} - -// A subroutine for CityHash128(). Returns a decent 128-bit hash for strings -// of any length representable in signed long. Based on City and Murmur. -static uint128 CityMurmur(const char *s, size_t len, uint128 seed) { - uint64 a = Uint128Low64(seed); - uint64 b = Uint128High64(seed); - uint64 c = 0; - uint64 d = 0; - signed long l = len - 16; - if (l <= 0) { // len <= 16 - a = ShiftMix(a * k1) * k1; - c = b * k1 + HashLen0to16(s, len); - d = ShiftMix(a + (len >= 8 ? Fetch64(s) : c)); - } else { // len > 16 - c = HashLen16(Fetch64(s + len - 8) + k1, a); - d = HashLen16(b + len, c + Fetch64(s + len - 16)); - a += d; - do { - a ^= ShiftMix(Fetch64(s) * k1) * k1; - a *= k1; - b ^= a; - c ^= ShiftMix(Fetch64(s + 8) * k1) * k1; - c *= k1; - d ^= c; - s += 16; - l -= 16; - } while (l > 0); - } - a = HashLen16(a, c); - b = HashLen16(d, b); - return uint128(a ^ b, HashLen16(b, a)); -} - -uint128 CityHash128WithSeed(const char *s, size_t len, uint128 seed) { - if (len < 128) { - return CityMurmur(s, len, seed); - } - - // We expect len >= 128 to be the common case. Keep 56 bytes of state: - // v, w, x, y, and z. - pair v, w; - uint64 x = Uint128Low64(seed); - uint64 y = Uint128High64(seed); - uint64 z = len * k1; - v.first = Rotate(y ^ k1, 49) * k1 + Fetch64(s); - v.second = Rotate(v.first, 42) * k1 + Fetch64(s + 8); - w.first = Rotate(y + z, 35) * k1 + x; - w.second = Rotate(x + Fetch64(s + 88), 53) * k1; - - // This is the same inner loop as CityHash64(), manually unrolled. - do { - x = Rotate(x + y + v.first + Fetch64(s + 8), 37) * k1; - y = Rotate(y + v.second + Fetch64(s + 48), 42) * k1; - x ^= w.second; - y += v.first + Fetch64(s + 40); - z = Rotate(z + w.first, 33) * k1; - v = WeakHashLen32WithSeeds(s, v.second * k1, x + w.first); - w = WeakHashLen32WithSeeds(s + 32, z + w.second, y + Fetch64(s + 16)); - std::swap(z, x); - s += 64; - x = Rotate(x + y + v.first + Fetch64(s + 8), 37) * k1; - y = Rotate(y + v.second + Fetch64(s + 48), 42) * k1; - x ^= w.second; - y += v.first + Fetch64(s + 40); - z = Rotate(z + w.first, 33) * k1; - v = WeakHashLen32WithSeeds(s, v.second * k1, x + w.first); - w = WeakHashLen32WithSeeds(s + 32, z + w.second, y + Fetch64(s + 16)); - std::swap(z, x); - s += 64; - len -= 128; - } while (LIKELY(len >= 128)); - x += Rotate(v.first + z, 49) * k0; - y = y * k0 + Rotate(w.second, 37); - z = z * k0 + Rotate(w.first, 27); - w.first *= 9; - v.first *= k0; - // If 0 < len < 128, hash up to 4 chunks of 32 bytes each from the end of s. - for (size_t tail_done = 0; tail_done < len; ) { - tail_done += 32; - y = Rotate(x + y, 42) * k0 + v.second; - w.first += Fetch64(s + len - tail_done + 16); - x = x * k0 + w.first; - z += w.second + Fetch64(s + len - tail_done); - w.second += v.first; - v = WeakHashLen32WithSeeds(s + len - tail_done, v.first + z, v.second); - v.first *= k0; - } - // At this point our 56 bytes of state should contain more than - // enough information for a strong 128-bit hash. We use two - // different 56-byte-to-8-byte hashes to get a 16-byte final result. - x = HashLen16(x, v.first); - y = HashLen16(y + z, w.first); - return uint128(HashLen16(x + v.second, w.second) + y, - HashLen16(x + w.second, y + v.second)); -} - -uint128 CityHash128(const char *s, size_t len) { - return len >= 16 ? - CityHash128WithSeed(s + 16, len - 16, - uint128(Fetch64(s), Fetch64(s + 8) + k0)) : - CityHash128WithSeed(s, len, uint128(k0, k1)); -} - -#ifdef __SSE4_2__ -#include -#include - -// Requires len >= 240. -static void CityHashCrc256Long(const char *s, size_t len, - uint32 seed, uint64 *result) { - uint64 a = Fetch64(s + 56) + k0; - uint64 b = Fetch64(s + 96) + k0; - uint64 c = result[0] = HashLen16(b, len); - uint64 d = result[1] = Fetch64(s + 120) * k0 + len; - uint64 e = Fetch64(s + 184) + seed; - uint64 f = 0; - uint64 g = 0; - uint64 h = c + d; - uint64 x = seed; - uint64 y = 0; - uint64 z = 0; - - // 240 bytes of input per iter. - size_t iters = len / 240; - len -= iters * 240; - do { -#undef CHUNK -#define CHUNK(r) \ - PERMUTE3(x, z, y); \ - b += Fetch64(s); \ - c += Fetch64(s + 8); \ - d += Fetch64(s + 16); \ - e += Fetch64(s + 24); \ - f += Fetch64(s + 32); \ - a += b; \ - h += f; \ - b += c; \ - f += d; \ - g += e; \ - e += z; \ - g += x; \ - z = _mm_crc32_u64(z, b + g); \ - y = _mm_crc32_u64(y, e + h); \ - x = _mm_crc32_u64(x, f + a); \ - e = Rotate(e, r); \ - c += e; \ - s += 40 - - CHUNK(0); PERMUTE3(a, h, c); - CHUNK(33); PERMUTE3(a, h, f); - CHUNK(0); PERMUTE3(b, h, f); - CHUNK(42); PERMUTE3(b, h, d); - CHUNK(0); PERMUTE3(b, h, e); - CHUNK(33); PERMUTE3(a, h, e); - } while (--iters > 0); - - while (len >= 40) { - CHUNK(29); - e ^= Rotate(a, 20); - h += Rotate(b, 30); - g ^= Rotate(c, 40); - f += Rotate(d, 34); - PERMUTE3(c, h, g); - len -= 40; - } - if (len > 0) { - s = s + len - 40; - CHUNK(33); - e ^= Rotate(a, 43); - h += Rotate(b, 42); - g ^= Rotate(c, 41); - f += Rotate(d, 40); - } - result[0] ^= h; - result[1] ^= g; - g += h; - a = HashLen16(a, g + z); - x += y << 32; - b += x; - c = HashLen16(c, z) + h; - d = HashLen16(d, e + result[0]); - g += e; - h += HashLen16(x, f); - e = HashLen16(a, d) + g; - z = HashLen16(b, c) + a; - y = HashLen16(g, h) + c; - result[0] = e + z + y + x; - a = ShiftMix((a + y) * k0) * k0 + b; - result[1] += a + result[0]; - a = ShiftMix(a * k0) * k0 + c; - result[2] = a + result[1]; - a = ShiftMix((a + e) * k0) * k0; - result[3] = a + result[2]; -} - -// Requires len < 240. -static void CityHashCrc256Short(const char *s, size_t len, uint64 *result) { - char buf[240]; - memcpy(buf, s, len); - memset(buf + len, 0, 240 - len); - CityHashCrc256Long(buf, 240, ~static_cast(len), result); -} - -void CityHashCrc256(const char *s, size_t len, uint64 *result) { - if (LIKELY(len >= 240)) { - CityHashCrc256Long(s, len, 0, result); - } else { - CityHashCrc256Short(s, len, result); - } -} - -uint128 CityHashCrc128WithSeed(const char *s, size_t len, uint128 seed) { - if (len <= 900) { - return CityHash128WithSeed(s, len, seed); - } else { - uint64 result[4]; - CityHashCrc256(s, len, result); - uint64 u = Uint128High64(seed) + result[0]; - uint64 v = Uint128Low64(seed) + result[1]; - return uint128(HashLen16(u, v + result[2]), - HashLen16(Rotate(v, 32), u * k0 + result[3])); - } -} - -uint128 CityHashCrc128(const char *s, size_t len) { - if (len <= 900) { - return CityHash128(s, len); - } else { - uint64 result[4]; - CityHashCrc256(s, len, result); - return uint128(result[2], result[3]); - } -} - -#endif diff --git a/source/vsearch_src/cityhash/city.h b/source/vsearch_src/cityhash/city.h deleted file mode 100644 index 9ab228d8..00000000 --- a/source/vsearch_src/cityhash/city.h +++ /dev/null @@ -1,113 +0,0 @@ -// Copyright (c) 2011 Google, Inc. -// -// Permission is hereby granted, free of charge, to any person obtaining a copy -// of this software and associated documentation files (the "Software"), to deal -// in the Software without restriction, including without limitation the rights -// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -// copies of the Software, and to permit persons to whom the Software is -// furnished to do so, subject to the following conditions: -// -// The above copyright notice and this permission notice shall be included in -// all copies or substantial portions of the Software. -// -// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN -// THE SOFTWARE. -// -// CityHash, by Geoff Pike and Jyrki Alakuijala -// -// http://code.google.com/p/cityhash/ -// -// This file provides a few functions for hashing strings. All of them are -// high-quality functions in the sense that they pass standard tests such -// as Austin Appleby's SMHasher. They are also fast. -// -// For 64-bit x86 code, on short strings, we don't know of anything faster than -// CityHash64 that is of comparable quality. We believe our nearest competitor -// is Murmur3. For 64-bit x86 code, CityHash64 is an excellent choice for hash -// tables and most other hashing (excluding cryptography). -// -// For 64-bit x86 code, on long strings, the picture is more complicated. -// On many recent Intel CPUs, such as Nehalem, Westmere, Sandy Bridge, etc., -// CityHashCrc128 appears to be faster than all competitors of comparable -// quality. CityHash128 is also good but not quite as fast. We believe our -// nearest competitor is Bob Jenkins' Spooky. We don't have great data for -// other 64-bit CPUs, but for long strings we know that Spooky is slightly -// faster than CityHash on some relatively recent AMD x86-64 CPUs, for example. -// Note that CityHashCrc128 is declared in citycrc.h. -// -// For 32-bit x86 code, we don't know of anything faster than CityHash32 that -// is of comparable quality. We believe our nearest competitor is Murmur3A. -// (On 64-bit CPUs, it is typically faster to use the other CityHash variants.) -// -// Functions in the CityHash family are not suitable for cryptography. -// -// Please see CityHash's README file for more details on our performance -// measurements and so on. -// -// WARNING: This code has been only lightly tested on big-endian platforms! -// It is known to work well on little-endian platforms that have a small penalty -// for unaligned reads, such as current Intel and AMD moderate-to-high-end CPUs. -// It should work on all 32-bit and 64-bit platforms that allow unaligned reads; -// bug reports are welcome. -// -// By the way, for some hash functions, given strings a and b, the hash -// of a+b is easily derived from the hashes of a and b. This property -// doesn't hold for any hash functions in this file. - -#ifndef CITY_HASH_H_ -#define CITY_HASH_H_ - - -#include // for size_t. -#include -#include - -typedef uint8_t uint8; -typedef uint32_t uint32; -typedef uint64_t uint64; -typedef std::pair uint128; - -inline uint64 Uint128Low64(const uint128& x) { return x.first; } -inline uint64 Uint128High64(const uint128& x) { return x.second; } - -// Hash function for a byte array. -uint64 CityHash64(const char *buf, size_t len); - -// Hash function for a byte array. For convenience, a 64-bit seed is also -// hashed into the result. -uint64 CityHash64WithSeed(const char *buf, size_t len, uint64 seed); - -// Hash function for a byte array. For convenience, two seeds are also -// hashed into the result. -uint64 CityHash64WithSeeds(const char *buf, size_t len, - uint64 seed0, uint64 seed1); - -// Hash function for a byte array. -uint128 CityHash128(const char *s, size_t len); - -// Hash function for a byte array. For convenience, a 128-bit seed is also -// hashed into the result. -uint128 CityHash128WithSeed(const char *s, size_t len, uint128 seed); - -// Hash function for a byte array. Most useful in 32-bit binaries. -uint32 CityHash32(const char *buf, size_t len); - -// Hash 128 input bits down to 64 bits of output. -// This is intended to be a reasonably good hash function. -inline uint64 Hash128to64(const uint128& x) { - // Murmur-inspired hashing. - const uint64 kMul = 0x9ddfea08eb382d69ULL; - uint64 a = (Uint128Low64(x) ^ Uint128High64(x)) * kMul; - a ^= (a >> 47); - uint64 b = (Uint128High64(x) ^ a) * kMul; - b ^= (b >> 47); - b *= kMul; - return b; -} - -#endif // CITY_HASH_H_ diff --git a/source/vsearch_src/cityhash/citycrc.h b/source/vsearch_src/cityhash/citycrc.h deleted file mode 100644 index 318e3917..00000000 --- a/source/vsearch_src/cityhash/citycrc.h +++ /dev/null @@ -1,43 +0,0 @@ -// Copyright (c) 2011 Google, Inc. -// -// Permission is hereby granted, free of charge, to any person obtaining a copy -// of this software and associated documentation files (the "Software"), to deal -// in the Software without restriction, including without limitation the rights -// to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -// copies of the Software, and to permit persons to whom the Software is -// furnished to do so, subject to the following conditions: -// -// The above copyright notice and this permission notice shall be included in -// all copies or substantial portions of the Software. -// -// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -// IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -// FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -// AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -// LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -// OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN -// THE SOFTWARE. -// -// CityHash, by Geoff Pike and Jyrki Alakuijala -// -// This file declares the subset of the CityHash functions that require -// _mm_crc32_u64(). See the CityHash README for details. -// -// Functions in the CityHash family are not suitable for cryptography. - -#ifndef CITY_HASH_CRC_H_ -#define CITY_HASH_CRC_H_ - -#include - -// Hash function for a byte array. -uint128 CityHashCrc128(const char *s, size_t len); - -// Hash function for a byte array. For convenience, a 128-bit seed is also -// hashed into the result. -uint128 CityHashCrc128WithSeed(const char *s, size_t len, uint128 seed); - -// Hash function for a byte array. Sets result[0] ... result[3]. -void CityHashCrc256(const char *s, size_t len, uint64 *result); - -#endif // CITY_HASH_CRC_H_ diff --git a/source/vsearch_src/cluster.cc b/source/vsearch_src/cluster.cc deleted file mode 100755 index 2fae7b25..00000000 --- a/source/vsearch_src/cluster.cc +++ /dev/null @@ -1,1380 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static int tophits; /* the maximum number of hits to keep */ -static int seqcount; /* number of database sequences */ - -typedef struct clusterinfo_s -{ - int seqno; - int clusterno; - char * cigar; - int strand; -} clusterinfo_t; - -static clusterinfo_t * clusterinfo = 0; -static int clusters = 0; - -static long * cluster_abundance; - -static FILE * fp_centroids = 0; -static FILE * fp_uc = 0; -static FILE * fp_alnout = 0; -static FILE * fp_samout = 0; -static FILE * fp_userout = 0; -static FILE * fp_blast6out = 0; -static FILE * fp_fastapairs = 0; -static FILE * fp_matched = 0; -static FILE * fp_notmatched = 0; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -static pthread_attr_t attr; -#endif - -static struct searchinfo_s * si_plus; -static struct searchinfo_s * si_minus; - -typedef struct thread_info_s -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_t thread; - pthread_mutex_t mutex; - pthread_cond_t cond; -#endif - int work; - int query_first; - int query_count; -} thread_info_t; - -static thread_info_t * ti; - -inline int compare_byclusterno(const void * a, const void * b) -{ - clusterinfo_t * x = (clusterinfo_t *) a; - clusterinfo_t * y = (clusterinfo_t *) b; - if (x->clusterno < y->clusterno) - return -1; - else if (x->clusterno > y->clusterno) - return +1; - else if (x->seqno < y->seqno) - return -1; - else if (x->seqno > y->seqno) - return +1; - else - return 0; -} - -inline int compare_byclusterabundance(const void * a, const void * b) -{ - clusterinfo_t * x = (clusterinfo_t *) a; - clusterinfo_t * y = (clusterinfo_t *) b; - if (cluster_abundance[x->clusterno] > cluster_abundance[y->clusterno]) - return -1; - else if (cluster_abundance[x->clusterno] < cluster_abundance[y->clusterno]) - return +1; - else if (x->clusterno < y->clusterno) - return -1; - else if (x->clusterno > y->clusterno) - return +1; - else if (x->seqno < y->seqno) - return -1; - else if (x->seqno > y->seqno) - return +1; - else - return 0; -} - - -inline void cluster_query_core(struct searchinfo_s * si) -{ - /* the main core function for clustering */ - - /* get sequence etc */ - int seqno = si->query_no; - si->query_head_len = db_getheaderlen(seqno); - si->query_head = db_getheader(seqno); - si->qsize = db_getabundance(seqno); - si->qseqlen = db_getsequencelen(seqno); - if (si->strand) - reverse_complement(si->qsequence, db_getsequence(seqno), si->qseqlen); - else - strcpy(si->qsequence, db_getsequence(seqno)); - - /* perform search */ - search_onequery(si, opt_qmask); -} - -inline void cluster_worker(long t) -{ - /* wrapper for the main threaded core function for clustering */ - for (int q = 0; q < ti[t].query_count; q++) - { - cluster_query_core(si_plus + ti[t].query_first + q); - if (opt_strand>1) - cluster_query_core(si_minus + ti[t].query_first + q); - } -} - -void * threads_worker(void * vp) -{ - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - long t = (long) vp; - thread_info_s * tip = ti + t; - pthread_mutex_lock(&tip->mutex); - /* loop until signalled to quit */ - while (tip->work >= 0) - { - /* wait for work available */ - if (tip->work == 0) - pthread_cond_wait(&tip->cond, &tip->mutex); - if (tip->work > 0) - { - cluster_worker(t); - tip->work = 0; - pthread_cond_signal(&tip->cond); - } - } - pthread_mutex_unlock(&tip->mutex); - #endif - return 0; -} - -void threads_wakeup(int queries) -{ - int threads = queries > opt_threads ? opt_threads : queries; - int queries_rest = queries; - int threads_rest = threads; - int query_next = 0; - - /* tell the threads that there is work to do */ - for(int t=0; t < threads; t++) - { - thread_info_t * tip = ti + t; - - tip->query_first = query_next; - tip->query_count = (queries_rest + threads_rest - 1) / threads_rest; - queries_rest -= tip->query_count; - query_next += tip->query_count; - threads_rest--; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_lock(&tip->mutex); - tip->work = 1; - pthread_cond_signal(&tip->cond); - pthread_mutex_unlock(&tip->mutex); -#else - ti->work = 1; -#endif - } - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - - /* wait for theads to finish their work */ - for(int t=0; t < threads; t++) - { - thread_info_t * tip = ti + t; - pthread_mutex_lock(&tip->mutex); - while (tip->work > 0) - pthread_cond_wait(&tip->cond, &tip->mutex); - pthread_mutex_unlock(&tip->mutex); - } -#endif -} - -void threads_init() -{ - /* allocate memory for thread info */ - ti = (thread_info_t *) xmalloc(opt_threads * sizeof(thread_info_t)); - - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - - /* init and create worker threads */ - for(int t=0; t < opt_threads; t++) - { - thread_info_t * tip = ti + t; - tip->work = 0; - pthread_mutex_init(&tip->mutex, 0); - pthread_cond_init(&tip->cond, 0); - if (pthread_create(&tip->thread, &attr, threads_worker, (void*)(long)t)) - fatal("Cannot create thread"); - } -#else - long t = 0; //one thread - ti->work = 0; - cluster_worker(t); -#endif - -} - -void threads_exit() -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* finish and clean up worker threads */ - for(int t=0; tmutex); - tip->work = -1; - pthread_cond_signal(&tip->cond); - pthread_mutex_unlock(&tip->mutex); - - /* wait for worker to quit */ - if (pthread_join(tip->thread, 0)) - fatal("Cannot join thread"); - - pthread_cond_destroy(&tip->cond); - pthread_mutex_destroy(&tip->mutex); - } - pthread_attr_destroy(&attr); -#endif - free(ti); - -} - -void cluster_query_init(struct searchinfo_s * si) -{ - /* initialisation of data for one thread; run once for each thread */ - /* thread specific initialiation */ - - si->qsize = 1; - si->nw = 0; - si->hit_count = 0; - - /* allocate memory for sequence */ - - si->seq_alloc = db_getlongestsequence() + 1; - si->qsequence = (char *) xmalloc(si->seq_alloc); - - si->kmers = (count_t *) xmalloc(seqcount * sizeof(count_t) + 32); - si->hits = (struct hit *) xmalloc(sizeof(struct hit) * tophits); - - si->uh = unique_init(); - si->m = minheap_init(tophits); - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - si->nw = nw_init(); -} - -void cluster_query_exit(struct searchinfo_s * si) -{ - /* clean up after thread execution; called once per thread */ - - search16_exit(si->s); - unique_exit(si->uh); - minheap_exit(si->m); - nw_exit(si->nw); - - if (si->qsequence) - free(si->qsequence); - if (si->hits) - free(si->hits); - if (si->kmers) - free(si->kmers); -} - -void cluster_core_results_hit(struct hit * best, - int clusterno, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ - if (opt_uc) - { - fprintf(fp_uc, "H\t%d\t%d\t%.1f\t%c\t0\t0\t%s\t%s\t%s\n", - clusterno, - qseqlen, - best->id, - best->strand ? '-' : '+', - best->nwalignment, - query_head, - db_getheader(best->target)); - } - - if (fp_alnout) - results_show_alnout(fp_alnout, - best, 1, query_head, - qsequence, qseqlen, qsequence_rc); - - if (fp_samout) - results_show_samout(fp_samout, - best, 1, query_head, - qsequence, qseqlen, qsequence_rc); - - if (fp_fastapairs) - results_show_fastapairs_one(fp_fastapairs, - best, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, best, query_head, - qsequence, qseqlen, qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, best, query_head, - qsequence, qseqlen, qsequence_rc); - - if (opt_matched) - fasta_print(fp_matched, query_head, qsequence, qseqlen); -} - -void cluster_core_results_nohit(int clusterno, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ - if (opt_uc) - { - fprintf(fp_uc, "S\t%d\t%d\t*\t*\t*\t*\t*\t%s\t*\n", - clusters, qseqlen, query_head); - } - - if (opt_output_no_hits) - { - if (fp_userout) - results_show_userout_one(fp_userout, 0, query_head, - qsequence, qseqlen, qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, 0, query_head, - qsequence, qseqlen, qsequence_rc); - } - - if (opt_notmatched) - fasta_print(fp_notmatched, query_head, qsequence, qseqlen); -} - -int compare_kmersample(const void * a, const void * b) -{ - unsigned int x = * (unsigned int *) a; - unsigned int y = * (unsigned int *) b; - - if (x < y) - return -1; - else if (x > y) - return +1; - else - return 0; -} - -void cluster_core_parallel() -{ - /* create threads and set them in stand-by mode */ - threads_init(); - - const int queries_per_thread = 1; - int max_queries = queries_per_thread * opt_threads; - - /* allocate memory for the search information for each query; - and initialize it */ - si_plus = (struct searchinfo_s *) xmalloc(max_queries * - sizeof(struct searchinfo_s)); - if (opt_strand>1) - si_minus = (struct searchinfo_s *) xmalloc(max_queries * - sizeof(struct searchinfo_s)); - for(int i = 0; i < max_queries; i++) - { - cluster_query_init(si_plus+i); - si_plus[i].strand = 0; - if (opt_strand > 1) - { - cluster_query_init(si_minus+i); - si_minus[i].strand = 1; - } - } - - int * extra_list = (int*) xmalloc(max_queries*sizeof(int)); - - LinearMemoryAligner lma; - long * scorematrix = lma.scorematrix_create(opt_match, opt_mismatch); - lma.set_parameters(scorematrix, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - int aligncount = 0; - - int lastlength = INT_MAX; - - int seqno = 0; - - long sum_nucleotides = 0; - - progress_init("Clustering", db_getnucleotidecount()); - - while(seqno < seqcount) - { - /* prepare work for the threads in sia[i] */ - /* read query sequences into the search info (si) for each thread */ - - int queries = 0; - - for(int i = 0; i < max_queries; i++) - { - if (seqno < seqcount) - { - int length = db_getsequencelen(seqno); - -#if 1 - if (opt_cluster_smallmem && (!opt_usersort) && (length > lastlength)) - fatal("Sequences not sorted by length and --usersort not specified."); -#endif - - lastlength = length; - - si_plus[i].query_no = seqno; - si_plus[i].strand = 0; - - if (opt_strand > 1) - { - si_minus[i].query_no = seqno; - si_minus[i].strand = 1; - } - - queries++; - seqno++; - } - } - - /* perform work in threads */ - threads_wakeup(queries); - - /* analyse results */ - int extra_count = 0; - - for(int i=0; i < queries; i++) - { - struct searchinfo_s * si_p = si_plus + i; - struct searchinfo_s * si_m = opt_strand > 1 ? si_minus + i : 0; - - for(int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_m : si_p; - - int added = 0; - - if (extra_count) - { - /* Check if there is a hit with one of the non-matching - extra sequences just analysed in this round */ - - for (int j=0; juh, - opt_wordlength, - sic->kmersamplecount, - sic->kmersample); - - /* check if min number of shared kmers is satisfied */ - if (search_enough_kmers(si, shared)) - { - unsigned int length = sic->qseqlen; - - /* Go through the list of hits and see if the current - match is better than any on the list in terms of - more shared kmers (or shorter length if equal - no of kmers). Determine insertion point (x). */ - - int x = si->hit_count; - while ((x > 0) && - ((si->hits[x-1].count < shared) || - ((si->hits[x-1].count == shared) && - (db_getsequencelen(si->hits[x-1].target) - > length)))) - x--; - - if (x < opt_maxaccepts + opt_maxrejects - 1) - { - /* insert into list at position x */ - - /* trash bottom element if no more space */ - if (si->hit_count >= opt_maxaccepts + opt_maxrejects - 1) - { - if (si->hits[si->hit_count-1].aligned) - free(si->hits[si->hit_count-1].nwalignment); - si->hit_count--; - } - - /* move the rest down */ - for(int z = si->hit_count; z > x; z--) - si->hits[z] = si->hits[z-1]; - - /* init new hit */ - struct hit * hit = si->hits + x; - si->hit_count++; - - hit->target = sic->query_no; - hit->strand = si->strand; - hit->count = shared; - hit->accepted = 0; - hit->rejected = 0; - hit->aligned = 0; - hit->weak = 0; - hit->nwalignment = 0; - - added++; - } - } - } - } - - /* now go through the hits and determine final status of each */ - - if (added) - { - si->rejects = 0; - si->accepts = 0; - - /* set all statuses to undetermined */ - - for(int t=0; t< si->hit_count; t++) - { - si->hits[t].accepted = 0; - si->hits[t].rejected = 0; - } - - for(int t = 0; - (si->accepts < opt_maxaccepts) && - (si->rejects < opt_maxrejects) && - (t < si->hit_count); - t++) - { - struct hit * hit = si->hits + t; - - if (! hit->aligned) - { - /* Test accept/reject criteria before alignment */ - unsigned int target = hit->target; - if (search_acceptable_unaligned(si, target)) - { - aligncount++; - - /* perform vectorized alignment */ - /* but only using 1 sequence ! */ - - unsigned int nwtarget = target; - - long nwscore; - long nwalignmentlength; - long nwmatches; - long nwmismatches; - long nwgaps; - char * nwcigar = 0; - - /* short variants for simd aligner */ - CELL snwscore; - unsigned short snwalignmentlength; - unsigned short snwmatches; - unsigned short snwmismatches; - unsigned short snwgaps; - - search16(si->s, - 1, - & nwtarget, - & snwscore, - & snwalignmentlength, - & snwmatches, - & snwmismatches, - & snwgaps, - & nwcigar); - - long tseqlen = db_getsequencelen(target); - - if (snwscore == SHRT_MAX) - { - /* In case the SIMD aligner cannot align, - perform a new alignment with the - linear memory aligner */ - - char * tseq = db_getsequence(target); - - if (nwcigar) - free(nwcigar); - - nwcigar = xstrdup(lma.align(si->qsequence, - tseq, - si->qseqlen, - tseqlen)); - - lma.alignstats(nwcigar, - si->qsequence, - tseq, - & nwscore, - & nwalignmentlength, - & nwmatches, - & nwmismatches, - & nwgaps); - } - else - { - nwscore = snwscore; - nwalignmentlength = snwalignmentlength; - nwmatches = snwmatches; - nwmismatches = snwmismatches; - nwgaps = snwgaps; - } - - - long nwdiff = nwalignmentlength - nwmatches; - long nwindels = nwdiff - nwmismatches; - - hit->aligned = 1; - hit->nwalignment = nwcigar; - hit->nwscore = nwscore; - hit->nwdiff = nwdiff; - hit->nwgaps = nwgaps; - hit->nwindels = nwindels; - hit->nwalignmentlength = nwalignmentlength; - hit->matches = nwmatches; - hit->mismatches = nwmismatches; - - hit->nwid = 100.0 * - (nwalignmentlength - hit->nwdiff) / - nwalignmentlength; - - hit->shortest = MIN(si->qseqlen, tseqlen); - hit->longest = MAX(si->qseqlen, tseqlen); - - /* trim alignment and compute numbers - excluding terminal gaps */ - align_trim(hit); - } - else - { - /* rejection without alignment */ - hit->rejected = 1; - si->rejects++; - } - } - - if (! hit->rejected) - { - /* test accept/reject criteria after alignment */ - if (search_acceptable_aligned(si, hit)) - si->accepts++; - else - si->rejects++; - } - } - - /* delete all undetermined hits */ - - int new_hit_count = si->hit_count; - for(int t=si->hit_count-1; t>=0; t--) - { - struct hit * hit = si->hits + t; - if (!hit->accepted && !hit->rejected) - { - new_hit_count = t; - if (hit->aligned) - free(hit->nwalignment); - } - } - si->hit_count = new_hit_count; - } - } - - /* find best hit */ - struct hit * best = 0; - if (opt_sizeorder) - best = search_findbest2_bysize(si_p, si_m); - else - best = search_findbest2_byid(si_p, si_m); - - int myseqno = si_p->query_no; - - if (best) - { - /* a hit was found, cluster current sequence with hit */ - int target = best->target; - - /* output intermediate results to uc etc */ - cluster_core_results_hit(best, - clusterinfo[target].clusterno, - si_p->query_head, - si_p->qseqlen, - si_p->qsequence, - best->strand ? si_m->qsequence : 0); - - /* update cluster info about this sequence */ - clusterinfo[myseqno].seqno = myseqno; - clusterinfo[myseqno].clusterno = clusterinfo[target].clusterno; - clusterinfo[myseqno].cigar = best->nwalignment; - clusterinfo[myseqno].strand = best->strand; - best->nwalignment = 0; - } - else - { - /* no hit found; add it to the list of extra sequences - that must be considered by the coming queries in this - round */ - extra_list[extra_count++] = i; - - /* update cluster info about this sequence */ - clusterinfo[myseqno].seqno = myseqno; - clusterinfo[myseqno].clusterno = clusters; - clusterinfo[myseqno].cigar = 0; - clusterinfo[myseqno].strand = 0; - - /* add current sequence to database */ - dbindex_addsequence(myseqno, opt_qmask); - - /* output intermediate results to uc etc */ - cluster_core_results_nohit(clusters, - si_p->query_head, - si_p->qseqlen, - si_p->qsequence, - 0); - clusters++; - } - - /* free alignments */ - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_m : si_p; - for(int j=0; jhit_count; j++) - if (si->hits[j].aligned) - if (si->hits[j].nwalignment) - free(si->hits[j].nwalignment); - } - - sum_nucleotides += si_p->qseqlen; - } - - progress_update(sum_nucleotides); - } - progress_done(); - -#if 0 - if (!opt_quiet) - fprintf(stderr, "Extra alignments computed: %d\n", aligncount); -#endif - - /* clean up search info */ - for(int i = 0; i < max_queries; i++) - { - cluster_query_exit(si_plus+i); - if (opt_strand > 1) - cluster_query_exit(si_minus+i); - } - - free(extra_list); - - free(si_plus); - if (opt_strand>1) - free(si_minus); - - /* terminate threads and clean up */ - threads_exit(); - - free(scorematrix); -} - -void cluster_core_serial() -{ - struct searchinfo_s si_p[1]; - struct searchinfo_s si_m[1]; - - cluster_query_init(si_p); - if (opt_strand > 1) - cluster_query_init(si_m); - - int lastlength = INT_MAX; - - progress_init("Clustering", seqcount); - for (int seqno=0; seqno lastlength)) - fatal("Sequences not sorted by length and --usersort not specified."); -#endif - - lastlength = length; - - si_p->query_no = seqno; - si_p->strand = 0; - cluster_query_core(si_p); - - if (opt_strand > 1) - { - si_m->query_no = seqno; - si_m->strand = 1; - cluster_query_core(si_m); - } - - struct hit * best = 0; - if (opt_sizeorder) - best = search_findbest2_bysize(si_p, si_m); - else - best = search_findbest2_byid(si_p, si_m); - - if (best) - { - int target = best->target; - cluster_core_results_hit(best, - clusterinfo[target].clusterno, - si_p->query_head, - si_p->qseqlen, - si_p->qsequence, - best->strand ? si_m->qsequence : 0); - clusterinfo[seqno].seqno = seqno; - clusterinfo[seqno].clusterno = clusterinfo[target].clusterno; - clusterinfo[seqno].cigar = best->nwalignment; - clusterinfo[seqno].strand = best->strand; - best->nwalignment = 0; - } - else - { - clusterinfo[seqno].seqno = seqno; - clusterinfo[seqno].clusterno = clusters; - clusterinfo[seqno].cigar = 0; - clusterinfo[seqno].strand = 0; - dbindex_addsequence(seqno, opt_qmask); - cluster_core_results_nohit(clusters, - si_p->query_head, - si_p->qseqlen, - si_p->qsequence, - 0); - clusters++; - } - - /* free alignments */ - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_m : si_p; - for(int i=0; ihit_count; i++) - if (si->hits[i].aligned) - if (si->hits[i].nwalignment) - free(si->hits[i].nwalignment); - } - - progress_update(seqno); - } - progress_done(); - - cluster_query_exit(si_p); - if (opt_strand>1) - cluster_query_exit(si_m); -} - - -void cluster(char * dbname, - char * cmdline, - char * progheader) -{ - if (opt_centroids) - { - fp_centroids = fopen(opt_centroids, "w"); - if (!fp_centroids) - fatal("Unable to open centroids file for writing"); - } - - if (opt_uc) - { - fp_uc = fopen(opt_uc, "w"); - if (!fp_uc) - fatal("Unable to open uc file for writing"); - } - - if (opt_alnout) - { - fp_alnout = fopen(opt_alnout, "w"); - if (! fp_alnout) - fatal("Unable to open alignment output file for writing"); - - fprintf(fp_alnout, "%s\n", cmdline); - fprintf(fp_alnout, "%s\n", progheader); - } - - if (opt_samout) - { - fp_samout = fopen(opt_samout, "w"); - if (! fp_samout) - fatal("Unable to open SAM output file for writing"); - } - - if (opt_userout) - { - fp_userout = fopen(opt_userout, "w"); - if (! fp_userout) - fatal("Unable to open user-defined output file for writing"); - } - - if (opt_blast6out) - { - fp_blast6out = fopen(opt_blast6out, "w"); - if (! fp_blast6out) - fatal("Unable to open blast6-like output file for writing"); - } - - if (opt_fastapairs) - { - fp_fastapairs = fopen(opt_fastapairs, "w"); - if (! fp_fastapairs) - fatal("Unable to open fastapairs output file for writing"); - } - - if (opt_matched) - { - fp_matched = fopen(opt_matched, "w"); - if (! fp_matched) - fatal("Unable to open matched output file for writing"); - } - - if (opt_notmatched) - { - fp_notmatched = fopen(opt_notmatched, "w"); - if (! fp_notmatched) - fatal("Unable to open notmatched output file for writing"); - } - - db_read(dbname, 0); - - results_show_samheader(fp_samout, cmdline, dbname); - - if (opt_qmask == MASK_DUST) - dust_all(); - else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) - hardmask_all(); - - show_rusage(); - - seqcount = db_getsequencecount(); - - if (opt_cluster_fast) - db_sortbylength(); - else if (opt_cluster_size) - db_sortbyabundance(); - - dbindex_prepare(1, opt_qmask); - - /* tophits = the maximum number of hits we need to store */ - - if ((opt_maxrejects == 0) || (opt_maxrejects > seqcount)) - opt_maxrejects = seqcount; - - if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) - opt_maxaccepts = seqcount; - - tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; - - if (tophits > seqcount) - tophits = seqcount; - - clusterinfo = (clusterinfo_t *) xmalloc(seqcount * sizeof(clusterinfo_t)); - - if (opt_log) - { - unsigned long slots = 1UL << (opt_wordlength << 1UL); - fprintf(fp_log, "\n"); - fprintf(fp_log, " Alphabet nt\n"); - fprintf(fp_log, " Word width %ld\n", opt_wordlength); - fprintf(fp_log, " Word ones %ld\n", opt_wordlength); - fprintf(fp_log, " Spaced No\n"); - fprintf(fp_log, " Hashed No\n"); - fprintf(fp_log, " Coded No\n"); - fprintf(fp_log, " Stepped No\n"); - fprintf(fp_log, " Slots %lu (%.1fk)\n", slots, slots/1000.0); - fprintf(fp_log, " DBAccel 100%%\n"); - fprintf(fp_log, "\n"); - } - - if (opt_threads == 1) - cluster_core_serial(); - else - cluster_core_parallel(); - - - /* find size and abundance of each cluster and save stats */ - - cluster_abundance = (long *) xmalloc(clusters * sizeof(long)); - int * cluster_size = (int *) xmalloc(clusters * sizeof(int)); - - memset(cluster_abundance, 0, clusters * sizeof(long)); - memset(cluster_size, 0, clusters * sizeof(int)); - - for(int i=0; i abundance_max) - abundance_max = abundance; - - if (abundance == 1) - singletons++; - - int size = cluster_size[z]; - if (size > size_max) - size_max = size; - } - - - /* Sort clusters */ - /* Sequences in same cluster must always come right after each other. */ - /* The centroid sequence must be the first in each cluster. */ - - progress_init("Sorting clusters", clusters); - qsort(clusterinfo, seqcount, sizeof(clusterinfo_t), compare_byclusterno); - progress_done(); - - progress_init("Writing clusters", seqcount); - - /* allocate memory for full file name of the clusters files */ - FILE * fp_clusters = 0; - char * fn_clusters = 0; - if (opt_clusters) - fn_clusters = (char *) xmalloc(strlen(opt_clusters) + 25); - - int lastcluster = -1; - - for(int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void cluster_smallmem(char * cmdline, char * progheader); -void cluster_fast(char * cmdline, char * progheader); -void cluster_size(char * cmdline, char * progheader); diff --git a/source/vsearch_src/cpu.cc b/source/vsearch_src/cpu.cc deleted file mode 100755 index f59d4b32..00000000 --- a/source/vsearch_src/cpu.cc +++ /dev/null @@ -1,155 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* This file contains code dependent on special cpu features (e.g. ssse3) */ -/* The file will be compiled several times with different cpu options */ - - -#ifdef __SSE2__ -void increment_counters_from_bitmap_sse2(unsigned short * counters, - unsigned char * bitmap, - unsigned int totalbits) -{ - /* - Increment selected elements in an array of 16 bit counters. - The counters to increment are indicated by 1's in the bitmap. - - We read 16 bytes from the bitmap, but use only two bytes (16 bits). - Convert these 16 bits into 16 bytes with either 0x00 or 0xFF. - Extend these to 16 words (32 bytes) with either 0x0000 or 0xFFFF. - Use these values to increment 16 words in an array by subtraction. - - See article below for some hints: - http://stackoverflow.com/questions/21622212/ - how-to-perform-the-inverse-of-mm256-movemask-epi8-vpmovmskb - - Because the efficient PSHUFB instruction is a SSSE3 instruction - lacking in many AMD cpus, we provide slightly slower alternative - SSE2 code. - */ - - const __m128i c2 = - _mm_set_epi32(0x7fbfdfef, 0xf7fbfdfe, 0x7fbfdfef, 0xf7fbfdfe); - - const __m128i c3 = - _mm_set_epi32(0xffffffff, 0xffffffff, 0xffffffff, 0xffffffff); - - unsigned short * p = (unsigned short *)(bitmap); - __m128i * q = (__m128i *)(counters); - int r = (totalbits + 15) / 16; - - for(int j=0; j, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#ifdef __SSE2__ -void increment_counters_from_bitmap_sse2(unsigned short * counters, - unsigned char * bitmap, - unsigned int totalbits); -#else - -void increment_counters_from_bitmap_ssse3(unsigned short * counters, - unsigned char * bitmap, - unsigned int totalbits); -#endif diff --git a/source/vsearch_src/db.cc b/source/vsearch_src/db.cc deleted file mode 100755 index c0e20f9f..00000000 --- a/source/vsearch_src/db.cc +++ /dev/null @@ -1,428 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -#define MEMCHUNK 16777216 - -static fastx_handle h; -static bool is_fastq = 0; -static unsigned long sequences = 0; -static unsigned long nucleotides = 0; -static unsigned long longest; -static unsigned long shortest; -static unsigned long longestheader; - -seqinfo_t * seqindex; -char * datap; - -bool db_is_fastq() -{ - return is_fastq; -} - -char * db_getquality(unsigned long seqno) -{ - if (is_fastq) - return datap + seqindex[seqno].qual_p; - else - return 0; -} - -void db_read(const char * filename, int upcase) -{ - /* compile regexp for abundance pattern */ - - h = fastx_open(filename); - - if (!h) - fatal("Unrecognized file type (not proper FASTA or FASTQ format)"); - - is_fastq = fastx_is_fastq(h); - - long filesize = fastx_get_size(h); - - char * prompt; - if (sprintf(prompt, "Reading file %s", filename) == -1) - fatal("Out of memory"); - - progress_init(prompt, filesize); - - longest = 0; - shortest = LONG_MAX; - longestheader = 0; - sequences = 0; - nucleotides = 0; - - long discarded_short = 0; - long discarded_long = 0; - - /* allocate space for data */ - unsigned long dataalloc = 0; - datap = 0; - unsigned long datalen = 0; - - /* allocate space for index */ - size_t seqindex_alloc = 0; - seqindex = 0; - - while(fastx_next(h, - ! opt_notrunclabels, - upcase ? chrmap_upcase : chrmap_no_change)) - { - size_t headerlength = fastx_get_header_length(h); - size_t sequencelength = fastx_get_sequence_length(h); - - unsigned int abundance = abundance_get(global_abundance, - fastx_get_header(h)); - - if (sequencelength < (size_t)opt_minseqlength) - { - discarded_short++; - } - else if (sequencelength > (size_t)opt_maxseqlength) - { - discarded_long++; - } - else - { - /* grow space for data, if necessary */ - size_t dataalloc_old = dataalloc; - size_t needed = datalen + headerlength + 1 + sequencelength + 1; - if (is_fastq) - needed += sequencelength + 1; - while (dataalloc < needed) - dataalloc += MEMCHUNK; - if (dataalloc > dataalloc_old) - datap = (char *) xrealloc(datap, dataalloc); - - /* store the header */ - size_t header_p = datalen; - memcpy(datap + header_p, - fastx_get_header(h), - headerlength + 1); - datalen += headerlength + 1; - - /* store sequence */ - size_t sequence_p = datalen; - memcpy(datap + sequence_p, - fastx_get_sequence(h), - sequencelength + 1); - datalen += sequencelength + 1; - - size_t quality_p = datalen; - if (is_fastq) - { - /* store quality */ - memcpy(datap+quality_p, - fastx_get_quality(h), - sequencelength + 1); - datalen += sequencelength + 1; - } - - /* grow space for index, if necessary */ - size_t seqindex_alloc_old = seqindex_alloc; - while ((sequences + 1) * sizeof(seqinfo_t) > seqindex_alloc) - seqindex_alloc += MEMCHUNK; - if (seqindex_alloc > seqindex_alloc_old) - seqindex = (seqinfo_t *) xrealloc(seqindex, seqindex_alloc); - - /* update index */ - seqinfo_t * seqindex_p = seqindex + sequences; - seqindex_p->headerlen = headerlength; - seqindex_p->seqlen = sequencelength; - seqindex_p->header_p = header_p; - seqindex_p->seq_p = sequence_p; - seqindex_p->qual_p = quality_p; - seqindex_p->size = abundance; - - /* update statistics */ - sequences++; - nucleotides += sequencelength; - if (sequencelength > longest) - longest = sequencelength; - if (sequencelength < shortest) - shortest = sequencelength; - if (headerlength > longestheader) - longestheader = headerlength; - } - progress_update(fastx_get_position(h)); - } - - progress_done(); - free(prompt); - fastx_close(h); - - if (!opt_quiet) - { - if (sequences > 0) - fprintf(stderr, - "%'lu nt in %'lu seqs, min %'lu, max %'lu, avg %'.0f\n", - db_getnucleotidecount(), - db_getsequencecount(), - db_getshortestsequence(), - db_getlongestsequence(), - db_getnucleotidecount() * 1.0 / db_getsequencecount()); - else - fprintf(stderr, - "%'lu nt in %'lu seqs\n", - db_getnucleotidecount(), - db_getsequencecount()); - } - - if (opt_log) - { - if (sequences > 0) - fprintf(fp_log, - "%'lu nt in %'lu seqs, min %'lu, max %'lu, avg %'.0f\n\n", - db_getnucleotidecount(), - db_getsequencecount(), - db_getshortestsequence(), - db_getlongestsequence(), - db_getnucleotidecount() * 1.0 / db_getsequencecount()); - else - fprintf(fp_log, - "%'lu nt in %'lu seqs\n\n", - db_getnucleotidecount(), - db_getsequencecount()); - } - - /* Warn about discarded sequences */ - - if (discarded_short) - { - fprintf(stderr, - "WARNING: %ld sequences shorter than %ld nucleotides discarded.\n", - discarded_short, opt_minseqlength); - - if (opt_log) - fprintf(fp_log, - "WARNING: %ld sequences shorter than %ld nucleotides discarded.\n\n", - discarded_short, opt_minseqlength); - } - - if (discarded_long) - { - fprintf(stderr, - "WARNING: %ld sequences longer than %ld nucleotides discarded.\n", - discarded_long, opt_maxseqlength); - - if (opt_log) - fprintf(fp_log, - "WARNING: %ld sequences longer than %ld nucleotides discarded.\n\n", - discarded_long, opt_maxseqlength); - } - - show_rusage(); -} - -unsigned long db_getsequencecount() -{ - return sequences; -} - -unsigned long db_getnucleotidecount() -{ - return nucleotides; -} - -unsigned long db_getlongestheader() -{ - return longestheader; -} - -unsigned long db_getlongestsequence() -{ - return longest; -} - -unsigned long db_getshortestsequence() -{ - return shortest; -} - -void db_free() -{ - if (datap) - free(datap); - if (seqindex) - free(seqindex); -} - -int compare_bylength(const void * a, const void * b) -{ - seqinfo_t * x = (seqinfo_t *) a; - seqinfo_t * y = (seqinfo_t *) b; - - /* longest first, then by abundance, then by label, otherwise keep order */ - - if (x->seqlen < y->seqlen) - return +1; - else if (x->seqlen > y->seqlen) - return -1; - else - { - if (x->size < y->size) - return +1; - else if (x->size > y->size) - return -1; - else - { - int r = strcmp(datap + x->header_p, datap + y->header_p); - if (r != 0) - return r; - else - { - if (x < y) - return -1; - else if (x > y) - return +1; - else - return 0; - } - } - } -} - -int compare_bylength_shortest_first(const void * a, const void * b) -{ - seqinfo_t * x = (seqinfo_t *) a; - seqinfo_t * y = (seqinfo_t *) b; - - /* shortest first, then by abundance, then by label, otherwise keep order */ - - if (x->seqlen < y->seqlen) - return -1; - else if (x->seqlen > y->seqlen) - return +1; - else - { - if (x->size < y->size) - return +1; - else if (x->size > y->size) - return -1; - else - { - int r = strcmp(datap + x->header_p, datap + y->header_p); - if (r != 0) - return r; - else - { - if (x < y) - return -1; - else if (x > y) - return +1; - else - return 0; - } - } - } -} - -inline int compare_byabundance(const void * a, const void * b) -{ - seqinfo_t * x = (seqinfo_t *) a; - seqinfo_t * y = (seqinfo_t *) b; - - /* most abundant first, then by label, otherwise keep order */ - - if (x->size > y->size) - return -1; - else if (x->size < y->size) - return +1; - else - { - int r = strcmp(datap + x->header_p, datap + y->header_p); - if (r != 0) - return r; - else - { - if (x < y) - return -1; - else if (x > y) - return +1; - else - return 0; - } - } -} - -void db_sortbylength() -{ - progress_init("Sorting by length", 100); - qsort(seqindex, sequences, sizeof(seqinfo_t), compare_bylength); - progress_done(); -} - -void db_sortbylength_shortest_first() -{ - progress_init("Sorting by length", 100); - qsort(seqindex, sequences, sizeof(seqinfo_t), compare_bylength_shortest_first); - progress_done(); -} - -void db_sortbyabundance() -{ - progress_init("Sorting by abundance", 100); - qsort(seqindex, sequences, sizeof(seqinfo_t), compare_byabundance); - progress_done(); -} - - diff --git a/source/vsearch_src/db.h b/source/vsearch_src/db.h deleted file mode 100755 index 7c7415b4..00000000 --- a/source/vsearch_src/db.h +++ /dev/null @@ -1,119 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -struct seqinfo_s -{ - size_t header_p; - size_t seq_p; - size_t qual_p; - unsigned int headerlen; - unsigned int seqlen; - unsigned int size; -}; - -typedef struct seqinfo_s seqinfo_t; - -extern char * datap; -extern seqinfo_t * seqindex; - -inline char * db_getheader(unsigned long seqno) -{ - return datap + seqindex[seqno].header_p; -} - -inline char * db_getsequence(unsigned long seqno) -{ - return datap + seqindex[seqno].seq_p; -} - -inline unsigned long db_getabundance(unsigned long seqno) -{ - return seqindex[seqno].size; -} - -inline unsigned long db_getsequencelen(unsigned long seqno) -{ - return seqindex[seqno].seqlen; -} - -inline unsigned long db_getheaderlen(unsigned long seqno) -{ - return seqindex[seqno].headerlen; -} - -void db_read(const char * filename, int upcase); -void db_free(); - -unsigned long db_getsequencecount(); -unsigned long db_getnucleotidecount(); -unsigned long db_getlongestheader(); -unsigned long db_getlongestsequence(); -unsigned long db_getshortestsequence(); - -/* Note: the sorting functions below must be called after db_read, - but before dbindex_prepare */ - -void db_sortbylength(); -void db_sortbylength_shortest_first(); - -void db_sortbyabundance(); - -bool db_is_fastq(); -char * db_getquality(unsigned long seqno); diff --git a/source/vsearch_src/dbindex.cc b/source/vsearch_src/dbindex.cc deleted file mode 100755 index 0222deda..00000000 --- a/source/vsearch_src/dbindex.cc +++ /dev/null @@ -1,217 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -unsigned int * kmercount; -unsigned long * kmerhash; -unsigned int * kmerindex; -bitmap_t * * kmerbitmap; -unsigned int * dbindex_map; - -static unsigned int kmerhashsize; -static unsigned long kmerindexsize; -unsigned int dbindex_count; - -static uhandle_s * dbindex_uh; - -#define BITMAP_THRESHOLD 8 - -static unsigned int bitmap_mincount; - -void fprint_kmer(FILE * f, unsigned int kk, unsigned long kmer) -{ - unsigned long x = kmer; - for(unsigned int i=0; i> (2*(kk-i-1))) & 3]); -} - -void dbindex_addsequence(unsigned int seqno, int seqmask) -{ -#if 0 - printf("Adding seqno %d as index element no %d\n", seqno, dbindex_count); -#endif - - unsigned int uniquecount; - unsigned int * uniquelist; - unique_count(dbindex_uh, opt_wordlength, - db_getsequencelen(seqno), db_getsequence(seqno), - & uniquecount, & uniquelist, seqmask); - dbindex_map[dbindex_count] = seqno; - for(unsigned int i=0; i= bitmap_mincount) - { - kmerbitmap[i] = bitmap_init(seqcount+127); // pad for xmm - bitmap_reset_all(kmerbitmap[i]); - } - else - sum += kmercount[i]; - } - kmerindexsize = sum; - kmerhash[kmerhashsize] = sum; - -#if 0 - if (!opt_quiet) - fprintf(stderr, "Unique %ld-mers: %u\n", opt_wordlength, kmerindexsize); -#endif - - /* reset counts */ - memset(kmercount, 0, kmerhashsize * sizeof(unsigned int)); - - /* allocate space for actual data */ - kmerindex = (unsigned int *) xmalloc(kmerindexsize * sizeof(unsigned int)); - - /* allocate space for mapping from indexno to seqno */ - dbindex_map = (unsigned int *) xmalloc(seqcount * sizeof(unsigned int)); - - dbindex_count = 0; - - show_rusage(); -} - -void dbindex_free() -{ - free(kmerhash); - free(kmerindex); - free(kmercount); - free(dbindex_map); - - for(unsigned int kmer=0; kmer, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -extern unsigned int * kmercount; /* number of matching seqnos for each kmer */ -extern unsigned long * kmerhash; /* index into the list below for each kmer */ -extern unsigned int * kmerindex; /* the list of matching seqnos for kmers */ -extern bitmap_t * * kmerbitmap; -extern unsigned int * dbindex_map; -extern unsigned int dbindex_count; - -void fprint_kmer(FILE * f, unsigned int k, unsigned long kmer); - -void dbindex_prepare(int use_bitmap, int seqmask); -void dbindex_addallsequences(int seqmask); -void dbindex_addsequence(unsigned int seqno, int seqmask); -void dbindex_free(); - -inline unsigned char * dbindex_getbitmap(unsigned int kmer) -{ - if (kmerbitmap[kmer]) - return kmerbitmap[kmer]->bitmap; - else - return 0; -} - -inline unsigned int dbindex_getmatchcount(unsigned int kmer) -{ - return kmercount[kmer]; -} - -inline unsigned int * dbindex_getmatchlist(unsigned int kmer) -{ - return kmerindex + kmerhash[kmer]; -} - -inline unsigned int dbindex_getmapping(unsigned int index) -{ - return dbindex_map[index]; -} - -inline unsigned int dbindex_getcount() -{ - return dbindex_count; -} diff --git a/source/vsearch_src/derep.cc b/source/vsearch_src/derep.cc deleted file mode 100755 index 1e4b6df2..00000000 --- a/source/vsearch_src/derep.cc +++ /dev/null @@ -1,802 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -//#define BITMAP - -#define HASH hash_cityhash64 - -struct bucket -{ - unsigned long hash; - unsigned int seqno_first; - unsigned int seqno_last; - unsigned int size; - bool deleted; -}; - -#ifdef BITMAP -unsigned char * hash_occupied = 0; - -void hash_set_occupied(unsigned long hashindex) -{ - hash_occupied[(hashindex) >> 3] |= 1 << (hashindex & 7); -} - -int hash_is_occupied(unsigned long hashindex) -{ - return hash_occupied[(hashindex) >> 3] & (1 << (hashindex & 7)); -} -#endif - -int derep_compare(const void * a, const void * b) -{ - struct bucket * x = (struct bucket *) a; - struct bucket * y = (struct bucket *) b; - - /* highest abundance first, then by label, otherwise keep order */ - - if (x->deleted > y->deleted) - return +1; - else if (x->deleted < y->deleted) - return -1; - else - { - if (x->size < y->size) - return +1; - else if (x->size > y->size) - return -1; - else - { - int r = strcmp(db_getheader(x->seqno_first), - db_getheader(y->seqno_first)); - if (r != 0) - return r; - else - { - if (x->seqno_first < y->seqno_first) - return -1; - else if (x->seqno_first > y->seqno_first) - return +1; - else - return 0; - } - } - } -} - -int seqcmp(char * a, char * b, int n) -{ - char * p = a; - char * q = b; - - if (n <= 0) - return 0; - - while ((n-- > 0) && (chrmap_4bit[(int)(*p)] == chrmap_4bit[(int)(*q)])) - { - if ((n == 0) || (*p == 0) || (*q == 0)) - break; - p++; - q++; - } - - return chrmap_4bit[(int)(*p)] - chrmap_4bit[(int)(*q)]; -} - -void derep_fulllength() -{ - FILE * fp_output = 0; - FILE * fp_uc = 0; - - if (opt_output) - { - fp_output = fopen(opt_output, "w"); - if (!fp_output) - fatal("Unable to open output file for writing"); - } - - if (opt_uc) - { - fp_uc = fopen(opt_uc, "w"); - if (!fp_uc) - fatal("Unable to open output (uc) file for writing"); - } - - db_read(opt_derep_fulllength, 0); - - show_rusage(); - - long dbsequencecount = db_getsequencecount(); - - /* adjust size of hash table for 2/3 fill rate */ - - long hashtablesize = 1; - int hash_shift = 0; - while (3 * dbsequencecount > 2 * hashtablesize) - { - hashtablesize <<= 1; - hash_shift++; - } - int hash_mask = hashtablesize - 1; - - struct bucket * hashtable = - (struct bucket *) xmalloc(sizeof(bucket) * hashtablesize); - - memset(hashtable, 0, sizeof(bucket) * hashtablesize); - -#ifdef BITMAP - hash_occupied = - (unsigned char *) xmalloc(hashtablesize / 8); - memset(hash_occupied, 0, hashtablesize / 8); -#endif - - long clusters = 0; - long sumsize = 0; - unsigned long maxsize = 0; - double median = 0.0; - double average = 0.0; - - /* alloc and init table of links to other sequences in cluster */ - - unsigned int * nextseqtab = (unsigned int*) xmalloc(sizeof(unsigned int) * dbsequencecount); - memset(nextseqtab, 0, sizeof(unsigned int) * dbsequencecount); - - char * seq_up = (char*) xmalloc(db_getlongestsequence() + 1); - char * rc_seq_up = (char*) xmalloc(db_getlongestsequence() + 1); - - progress_init("Dereplicating", dbsequencecount); - for(long i=0; i 1) - reverse_complement(rc_seq_up, seq_up, seqlen); - - /* - Find free bucket or bucket for identical sequence. - Make sure sequences are exactly identical - in case of any hash collision. - With 64-bit hashes, there is about 50% chance of a - collision when the number of sequences is about 5e9. - */ - - unsigned long hash = HASH(seq_up, seqlen); - unsigned long j = hash & hash_mask; - struct bucket * bp = hashtable + j; - - while ( -#ifdef BITMAP - (hash_is_occupied(j)) -#else - (bp->size) -#endif - && - ((bp->hash != hash) || - (seqlen != db_getsequencelen(bp->seqno_first)) || - (seqcmp(seq_up, db_getsequence(bp->seqno_first), seqlen)))) - { - bp++; - j++; - if (bp >= hashtable + hashtablesize) - { - bp = hashtable; - j = 0; - } - } - - if ((opt_strand > 1) && !bp->size) - { - /* no match on plus strand */ - /* check minus strand as well */ - - unsigned long rc_hash = HASH(rc_seq_up, seqlen); - struct bucket * rc_bp = hashtable + rc_hash % hashtablesize; - unsigned long k = rc_hash & hash_mask; - - while ( -#ifdef BITMAP - (hash_is_occupied(j)) -#else - (rc_bp->size) -#endif - && - ((rc_bp->hash != rc_hash) || - (seqlen != db_getsequencelen(rc_bp->seqno_first)) || - (seqcmp(rc_seq_up, - db_getsequence(rc_bp->seqno_first), - seqlen)))) - { - rc_bp++; - k++; - if (rc_bp >= hashtable + hashtablesize) - { - rc_bp = hashtable; - k++; - } - } - - if (rc_bp->size) - { - bp = rc_bp; - j = k; - } - } - - long ab = opt_sizein ? db_getabundance(i) : 1; - sumsize += ab; - - if (bp->size) - { - /* at least one identical sequence already */ - bp->size += ab; - unsigned int last = bp->seqno_last; - nextseqtab[last] = i; - bp->seqno_last = i; - } - else - { - /* no identical sequences yet */ - bp->size = ab; - bp->hash = hash; - bp->seqno_first = i; - bp->seqno_last = i; - clusters++; - } - - if (bp->size > maxsize) - maxsize = bp->size; - -#ifdef BITMAP - hash_set_occupied(j); -#endif - - progress_update(i); - } - progress_done(); - - free(seq_up); - free(rc_seq_up); - - show_rusage(); - - - progress_init("Sorting", 1); - qsort(hashtable, hashtablesize, sizeof(bucket), derep_compare); - progress_done(); - - - if (clusters > 0) - { - if (clusters % 2) - median = hashtable[(clusters-1)/2].size; - else - median = (hashtable[(clusters/2)-1].size + - hashtable[clusters/2].size) / 2.0; - } - - average = 1.0 * sumsize / clusters; - - if (!opt_quiet) - fprintf(stderr, - "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n", - clusters, average, median, maxsize); - - if (opt_log) - fprintf(fp_log, - "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n\n", - clusters, average, median, maxsize); - - show_rusage(); - - - /* count selected */ - - long selected = 0; - for (long i=0; isize; - if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) - { - selected++; - if (selected == opt_topn) - break; - } - } - - - /* write output */ - - if (opt_output) - { - progress_init("Writing output file", clusters); - - long relabel_count = 0; - for (long i=0; isize; - if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) - { - relabel_count++; - fasta_print_relabel(fp_output, - db_getsequence(bp->seqno_first), - db_getsequencelen(bp->seqno_first), - db_getheader(bp->seqno_first), - db_getheaderlen(bp->seqno_first), - size, - relabel_count); - if (relabel_count == opt_topn) - break; - } - progress_update(i); - } - - progress_done(); - fclose(fp_output); - } - - show_rusage(); - - if (opt_uc) - { - progress_init("Writing uc file, first part", clusters); - for (long i=0; iseqno_first); - long len = db_getsequencelen(bp->seqno_first); - - fprintf(fp_uc, "S\t%ld\t%ld\t*\t*\t*\t*\t*\t%s\t*\n", - i, len, h); - - for (unsigned long next = nextseqtab[bp->seqno_first]; - next; - next = nextseqtab[next]) - fprintf(fp_uc, - "H\t%ld\t%ld\t%.1f\t*\t0\t0\t*\t%s\t%s\n", - i, len, 100.0, db_getheader(next), h); - - progress_update(i); - } - progress_done(); - show_rusage(); - - progress_init("Writing uc file, second part", clusters); - for (long i=0; isize, db_getheader(bp->seqno_first)); - progress_update(i); - } - fclose(fp_uc); - progress_done(); - show_rusage(); - } - - if (selected < clusters) - { - if (!opt_quiet) - fprintf(stderr, - "%ld uniques written, %ld clusters discarded (%.1f%%)\n", - selected, clusters - selected, - 100.0 * (clusters - selected) / clusters); - - if (opt_log) - fprintf(fp_log, - "%ld uniques written, %ld clusters discarded (%.1f%%)\n\n", - selected, clusters - selected, - 100.0 * (clusters - selected) / clusters); - } - - free(nextseqtab); - free(hashtable); - db_free(); -} - - -void derep_prefix() -{ - FILE * fp_output = 0; - FILE * fp_uc = 0; - - if (opt_output) - { - fp_output = fopen(opt_output, "w"); - if (!fp_output) - fatal("Unable to open output file for writing"); - } - - if (opt_uc) - { - fp_uc = fopen(opt_uc, "w"); - if (!fp_uc) - fatal("Unable to open output (uc) file for writing"); - } - - db_read(opt_derep_prefix, 0); - - db_sortbylength_shortest_first(); - - show_rusage(); - - long dbsequencecount = db_getsequencecount(); - - /* adjust size of hash table for 2/3 fill rate */ - - long hashtablesize = 1; - int hash_shift = 0; - while (3 * dbsequencecount > 2 * hashtablesize) - { - hashtablesize <<= 1; - hash_shift++; - } - int hash_mask = hashtablesize - 1; - - struct bucket * hashtable = - (struct bucket *) xmalloc(sizeof(bucket) * hashtablesize); - - memset(hashtable, 0, sizeof(bucket) * hashtablesize); - - long clusters = 0; - long sumsize = 0; - unsigned long maxsize = 0; - double median = 0.0; - double average = 0.0; - - /* alloc and init table of links to other sequences in cluster */ - - unsigned int * nextseqtab = (unsigned int*) xmalloc(sizeof(unsigned int) * dbsequencecount); - memset(nextseqtab, 0, sizeof(unsigned int) * dbsequencecount); - - char * seq_up = (char*) xmalloc(db_getlongestsequence() + 1); - - /* make table of hash values of prefixes */ - - unsigned int len_longest = db_getlongestsequence(); - unsigned int len_shortest = db_getshortestsequence(); - unsigned long * prefix_hashes = (unsigned long *) - xmalloc(sizeof(unsigned long) * (len_longest+1)); - - progress_init("Dereplicating", dbsequencecount); - for(long i=0; isize) && - ((bp->deleted) || - (bp->hash != hash) || - (prefix_len != db_getsequencelen(bp->seqno_first)) || - (seqcmp(seq_up, db_getsequence(bp->seqno_first), prefix_len)))) - { - bp++; - if (bp >= hashtable + hashtablesize) - bp = hashtable; - } - - /* at this point, bp points either to (1) a free empty hash bucket, or - (2) a bucket with an exact match. */ - - unsigned long orig_hash = hash; - struct bucket * orig_bp = bp; - - if (bp->size) - { - /* exact match */ - bp->size += ab; - unsigned int last = bp->seqno_last; - nextseqtab[last] = i; - bp->seqno_last = i; - - if (bp->size > maxsize) - maxsize = bp->size; - } - else - { - /* look for prefix match */ - - while((! bp->size) && (prefix_len-- >= len_shortest)) - { - hash = prefix_hashes[prefix_len-1]; - bp = hashtable + (hash & hash_mask); - - while ((bp->size) && - ((bp->deleted) || - (bp->hash != hash) || - (prefix_len != db_getsequencelen(bp->seqno_first)) || - (seqcmp(seq_up, - db_getsequence(bp->seqno_first), - prefix_len)))) - { - bp++; - if (bp >= hashtable + hashtablesize) - bp = hashtable; - } - } - - if ((bp->size) && (prefix_len >= len_shortest)) - { - /* prefix match */ - - /* get necessary info, then delete prefix from hash */ - unsigned int first = bp->seqno_first; - unsigned int last = bp->seqno_last; - unsigned int size = bp->size; - bp->deleted = true; - - /* create new hash entry */ - bp = orig_bp; - bp->size = size + ab; - bp->hash = orig_hash; - bp->seqno_first = i; - nextseqtab[i] = first; - bp->seqno_last = last; - - if (bp->size > maxsize) - maxsize = bp->size; - } - else - { - /* no match */ - orig_bp->size = ab; - orig_bp->hash = orig_hash; - orig_bp->seqno_first = i; - orig_bp->seqno_last = i; - - if (ab > maxsize) - maxsize = ab; - clusters++; - } - } - - progress_update(i); - } - progress_done(); - - free(prefix_hashes); - - free(seq_up); - - show_rusage(); - - progress_init("Sorting", 1); - qsort(hashtable, hashtablesize, sizeof(bucket), derep_compare); - progress_done(); - - if (clusters > 0) - { - if (clusters % 2) - median = hashtable[(clusters-1)/2].size; - else - median = (hashtable[(clusters/2)-1].size + - hashtable[clusters/2].size) / 2.0; - } - - average = 1.0 * sumsize / clusters; - - if (!opt_quiet) - fprintf(stderr, - "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n", - clusters, average, median, maxsize); - - if (opt_log) - fprintf(fp_log, - "%ld unique sequences, avg cluster %.1lf, median %.0f, max %lu\n\n", - clusters, average, median, maxsize); - - show_rusage(); - - /* count selected */ - - long selected = 0; - for (long i=0; isize; - if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) - { - selected++; - if (selected == opt_topn) - break; - } - } - - - /* write output */ - - if (opt_output) - { - progress_init("Writing output file", clusters); - - long relabel_count = 0; - for (long i=0; isize; - if ((size >= opt_minuniquesize) && (size <= opt_maxuniquesize)) - { - relabel_count++; - fasta_print_relabel(fp_output, - db_getsequence(bp->seqno_first), - db_getsequencelen(bp->seqno_first), - db_getheader(bp->seqno_first), - db_getheaderlen(bp->seqno_first), - size, - relabel_count); - if (relabel_count == opt_topn) - break; - } - progress_update(i); - } - - progress_done(); - fclose(fp_output); - } - - show_rusage(); - - if (opt_uc) - { - progress_init("Writing uc file, first part", clusters); - for (long i=0; iseqno_first); - long len = db_getsequencelen(bp->seqno_first); - - fprintf(fp_uc, "S\t%ld\t%ld\t*\t*\t*\t*\t*\t%s\t*\n", - i, len, h); - - for (unsigned long next = nextseqtab[bp->seqno_first]; - next; - next = nextseqtab[next]) - fprintf(fp_uc, - "H\t%ld\t%lu\t%.1f\t*\t0\t0\t*\t%s\t%s\n", - i, db_getsequencelen(next), 100.0, db_getheader(next), h); - - progress_update(i); - } - progress_done(); - show_rusage(); - - progress_init("Writing uc file, second part", clusters); - for (long i=0; isize, db_getheader(bp->seqno_first)); - progress_update(i); - } - fclose(fp_uc); - progress_done(); - show_rusage(); - } - - if (selected < clusters) - { - if (!opt_quiet) - fprintf(stderr, - "%ld uniques written, %ld clusters discarded (%.1f%%)\n", - selected, clusters - selected, - 100.0 * (clusters - selected) / clusters); - - if (opt_log) - fprintf(fp_log, - "%ld uniques written, %ld clusters discarded (%.1f%%)\n\n", - selected, clusters - selected, - 100.0 * (clusters - selected) / clusters); - } - - free(nextseqtab); - free(hashtable); - db_free(); -} diff --git a/source/vsearch_src/derep.h b/source/vsearch_src/derep.h deleted file mode 100755 index 754b8910..00000000 --- a/source/vsearch_src/derep.h +++ /dev/null @@ -1,62 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void derep_fulllength(); -void derep_prefix(); diff --git a/source/vsearch_src/fasta.cc b/source/vsearch_src/fasta.cc deleted file mode 100755 index 75d37d83..00000000 --- a/source/vsearch_src/fasta.cc +++ /dev/null @@ -1,713 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -#define FASTA_BUFFER_ALLOC 8192 - -#ifdef HAVE_BZLIB_H -#define BZ_VERBOSE_0 0 -#define BZ_VERBOSE_1 1 -#define BZ_VERBOSE_2 2 -#define BZ_VERBOSE_3 3 -#define BZ_VERBOSE_4 4 -#define BZ_MORE_MEM 0 /* faster decompression using more memory */ -#define BZ_LESS_MEM 1 /* slower decompression but requires less memory */ -#endif - -#define FORMAT_PLAIN 1 -#define FORMAT_BZIP 2 -#define FORMAT_GZIP 3 - -static unsigned char MAGIC_GZIP[] = "\x1f\x8b"; -static unsigned char MAGIC_BZIP[] = "BZ"; - -void buffer_init(struct fasta_buffer_s * buffer) -{ - buffer->alloc = FASTA_BUFFER_ALLOC; - buffer->data = (char*) xmalloc(buffer->alloc); - buffer->data[0] = 0; - buffer->length = 0; - buffer->position = 0; -} - -void buffer_free(struct fasta_buffer_s * buffer) -{ - if (buffer->data) - free(buffer->data); - buffer->data = 0; - buffer->alloc = 0; - buffer->length = 0; - buffer->position = 0; -} - -fasta_handle fasta_open(const char * filename) -{ - fasta_handle h = (fasta_handle) xmalloc(sizeof(struct fasta_s)); - - h->fp = NULL; - h->fp = fopen(filename, "rb"); - if(!h->fp) - fatal("Error: Unable to open fasta file for reading (%s)", filename); - - /* detect compression (plain, gzipped or bzipped) */ - - unsigned char magic[2]; - h->format = FORMAT_PLAIN; - if (fread(&magic, 1, 2, h->fp) >= 2) - { - if (!memcmp(magic, MAGIC_GZIP, 2)) - h->format = FORMAT_GZIP; - else if (!memcmp(magic, MAGIC_BZIP, 2)) - h->format = FORMAT_BZIP; - } - - /* Get size of original (uncompressed) file */ - - if (fseek(h->fp, 0, SEEK_END)) - fatal("Error: Unable to seek in fasta file (%s)", filename); - h->file_size = ftell(h->fp); - rewind(h->fp); - - if (h->format == FORMAT_GZIP) - { - /* GZIP: Keep original file open, then open as gzipped file as well */ -#ifdef HAVE_ZLIB_H - if (!gz_lib) - fatal("Files compressed with gzip are not supported"); - if (! (h->fp_gz = (*gzdopen_p)(fileno(h->fp), "rb"))) - fatal("Unable to open gzip compressed fasta file (%s)", filename); -#else - fatal("Files compressed with gzip are not supported"); -#endif - } - - if (h->format == FORMAT_BZIP) - { - /* BZIP2: Keep original file open, then open as bzipped file as well */ -#ifdef HAVE_ZLIB_H - if (!bz2_lib) - fatal("Files compressed with bzip2 are not supported"); - int bzError; - if (! (h->fp_bz = (*BZ2_bzReadOpen_p)(& bzError, h->fp, - BZ_VERBOSE_0, BZ_MORE_MEM, - NULL, 0))) - fatal("Unable to open bzip2 compressed fasta file (%s)", filename); -#else - fatal("Files compressed with bzip2 are not supported"); -#endif - } - - - - h->stripped_all = 0; - - for(int i=0; i<256; i++) - h->stripped[i] = 0; - - h->file_position = 0; - - buffer_init(& h->file_buffer); - buffer_init(& h->header_buffer); - buffer_init(& h->sequence_buffer); - - h->lineno = 1; - h->lineno_start = 1; - h->seqno = -1; - - return h; -} - -void fasta_close(fasta_handle h) -{ - /* Warn about stripped chars */ - - if (h->stripped_all) - { - fprintf(stderr, "WARNING: invalid characters stripped from fasta file:"); - for (int i=0; i<256;i++) - if (h->stripped[i]) - fprintf(stderr, " %c(%lu)", i, h->stripped[i]); - fprintf(stderr, "\n"); - - if (opt_log) - { - fprintf(fp_log, "WARNING: invalid characters stripped from fasta file:"); - for (int i=0; i<256;i++) - if (h->stripped[i]) - fprintf(fp_log, " %c(%lu)", i, h->stripped[i]); - fprintf(fp_log, "\n"); - } - } - -#ifdef HAVE_BZLIB_H - int bz_error; -#endif - - switch(h->format) - { - case FORMAT_PLAIN: - fclose(h->fp); - h->fp = 0; - break; - - case FORMAT_GZIP: -#ifdef HAVE_ZLIB_H - (*gzclose_p)(h->fp_gz); - h->fp_gz = 0; - h->fp = 0; - break; -#endif - - case FORMAT_BZIP: -#ifdef HAVE_BZLIB_H - (*BZ2_bzReadClose_p)(&bz_error, h->fp_bz); - h->fp_bz = 0; - h->fp = 0; - break; -#endif - - default: - fatal("Internal error"); - } - - buffer_free(& h->file_buffer); - buffer_free(& h->header_buffer); - buffer_free(& h->sequence_buffer); - - h->file_size = 0; - h->file_position = 0; - - h->lineno = 0; - h->seqno = -1; - - free(h); -} - - -unsigned long fasta_file_fill_buffer(fasta_handle h) -{ - /* read more data if necessary */ - unsigned long rest = h->file_buffer.length - h->file_buffer.position; - - if (rest > 0) - return rest; - else - { - unsigned long space = h->file_buffer.alloc - h->file_buffer.length; - - if (space == 0) - { - /* back to beginning of buffer */ - h->file_buffer.position = 0; - h->file_buffer.length = 0; - space = h->file_buffer.alloc; - } - - int bytes_read = 0; - -#ifdef HAVE_BZLIB_H - int bzError = 0; -#endif - - switch(h->format) - { - case FORMAT_PLAIN: - bytes_read = fread(h->file_buffer.data - + h->file_buffer.position, - 1, - space, - h->fp); - break; - - case FORMAT_GZIP: -#ifdef HAVE_ZLIB_H - bytes_read = (*gzread_p)(h->fp_gz, - h->file_buffer.data - + h->file_buffer.position, - space); - if (bytes_read < 0) - fatal("Error reading gzip compressed fasta file"); - break; -#endif - - case FORMAT_BZIP: -#ifdef HAVE_BZLIB_H - bytes_read = (*BZ2_bzRead_p)(& bzError, - h->fp_bz, - h->file_buffer.data - + h->file_buffer.position, - space); - if ((bytes_read < 0) || - ! ((bzError == BZ_OK) || - (bzError == BZ_STREAM_END) || - (bzError == BZ_SEQUENCE_ERROR))) - fatal("Error reading bzip2 compressed fasta file"); - break; -#endif - - default: - fatal("Internal error"); - } - - h->file_buffer.length += bytes_read; - return bytes_read; - } -} - -void buffer_extend(struct fasta_buffer_s * buffer, char * buf, unsigned long len) -{ - if (buffer->length + len + 1 > buffer->alloc) - { - /* alloc space for len more characters + terminating zero, - but round up to nearest block size */ - buffer->alloc = - FASTA_BUFFER_ALLOC * - (((buffer->length + len) / FASTA_BUFFER_ALLOC) + 1); - buffer->data = (char*) xrealloc(buffer->data, buffer->alloc); - } - - /* copy string */ - memcpy(buffer->data + buffer->length, buf, len); - buffer->length += len; - - /* add terminator */ - buffer->data[buffer->length] = 0; -} - -void fasta_truncate_header(fasta_handle h, bool truncateatspace) -{ - /* Truncate the zero-terminated header string by inserting a new - terminator (zero byte) at the first space/tab character - (if truncateatspace) or first linefeed. */ - - if (truncateatspace) - h->header_buffer.length = strcspn(h->header_buffer.data, " \t\n"); - else - h->header_buffer.length = strcspn(h->header_buffer.data, "\n"); - - h->header_buffer.data[h->header_buffer.length] = 0; -} - -void fasta_filter_sequence(fasta_handle h, - unsigned int * char_action, - char * char_mapping) -{ - /* Strip unwanted characters from the sequence and raise warnings or - errors on certain characters. */ - - char * p = h->sequence_buffer.data; - char * q = p; - char c; - char msg[200]; - - while ((c = *p++)) - { - char m = char_action[(int)c]; - - switch(m) - { - case 0: - /* stripped */ - h->stripped_all++; - h->stripped[(int)c]++; - break; - - case 1: - /* legal character */ - *q++ = char_mapping[(int)(c)]; - break; - - case 2: - /* fatal character */ - if ((c>=32) && (c<127)) - snprintf(msg, - 200, - "illegal character '%c' on line %lu in fasta file", - c, - h->lineno); - else - snprintf(msg, - 200, - "illegal unprintable character %#.2x (hexadecimal) on line %lu in fasta file", - c, - h->lineno); - fatal(msg); - break; - - case 3: - /* silently stripped chars (whitespace) */ - break; - - case 4: - /* newline (silently stripped) */ - h->lineno++; - break; - } - } - - /* add zero after sequence */ - *q = 0; - h->sequence_buffer.length = q - h->sequence_buffer.data; -} - -bool fasta_next(fasta_handle h, - bool truncateatspace, - char * char_mapping) -{ - h->lineno_start = h->lineno; - - h->header_buffer.length = 0; - h->sequence_buffer.length = 0; - - unsigned long rest = fasta_file_fill_buffer(h); - - if (rest == 0) - return 0; - - /* read header */ - - /* check initial > character */ - - if (h->file_buffer.data[h->file_buffer.position] != '>') - fatal("Invalid FASTA - header must start with > character"); - h->file_buffer.position++; - rest--; - - char * lf = 0; - while (lf == 0) - { - /* get more data if buffer empty*/ - rest = fasta_file_fill_buffer(h); - if (rest == 0) - fatal("Invalid FASTA - header must be terminated with newline"); - - /* find LF */ - lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, - '\n', - rest); - - /* copy to header buffer */ - unsigned long len = rest; - if (lf) - { - /* LF found, copy up to and including LF */ - len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; - h->lineno++; - } - buffer_extend(& h->header_buffer, - h->file_buffer.data + h->file_buffer.position, - len); - h->file_buffer.position += len; - rest -= len; - } - - /* read one or more sequence lines */ - - while (1) - { - /* get more data, if necessary */ - rest = fasta_file_fill_buffer(h); - - /* end if no more data */ - if (rest == 0) - break; - - /* end if new sequence starts */ - if (lf && (h->file_buffer.data[h->file_buffer.position] == '>')) - break; - - /* find LF */ - lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, - '\n', rest); - - unsigned long len = rest; - if (lf) - { - /* LF found, copy up to and including LF */ - len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; - } - buffer_extend(& h->sequence_buffer, - h->file_buffer.data + h->file_buffer.position, - len); - h->file_buffer.position += len; - rest -= len; - } - - h->seqno++; - - fasta_truncate_header(h, truncateatspace); - fasta_filter_sequence(h, char_fasta_action, char_mapping); - -#ifdef HAVE_ZLIB_H - if (h->format == FORMAT_GZIP) - { - /* Circumvent the missing gzoffset function in zlib 1.2.3 and earlier */ - int fd = dup(fileno(h->fp)); - h->file_position = lseek(fd, 0, SEEK_CUR); - close(fd); - } - else -#endif - h->file_position = ftell(h->fp); - - return 1; -} - -long fasta_get_abundance(fasta_handle h) -{ - return abundance_get(global_abundance, h->header_buffer.data); -} - -unsigned long fasta_get_position(fasta_handle h) -{ - return h->file_position; -} - -unsigned long fasta_get_size(fasta_handle h) -{ - return h->file_size; -} - -unsigned long fasta_get_lineno(fasta_handle h) -{ - return h->lineno_start; -} - -unsigned long fasta_get_seqno(fasta_handle h) -{ - return h->seqno; -} - -unsigned long fasta_get_header_length(fasta_handle h) -{ - return h->header_buffer.length; -} - -unsigned long fasta_get_sequence_length(fasta_handle h) -{ - return h->sequence_buffer.length; -} - -char * fasta_get_header(fasta_handle h) -{ - return h->header_buffer.data; -} - -char * fasta_get_sequence(fasta_handle h) -{ - return h->sequence_buffer.data; -} - - -/* fasta output */ - -void fasta_print_header(FILE * fp, const char * hdr) -{ - fprintf(fp, ">%s\n", hdr); -} - -void fasta_print_sequence(FILE * fp, char * seq, unsigned long len, int width) -{ - /* - The actual length of the sequence may be longer than "len", but only - "len" characters are printed. - - Specify width of lines - zero (or <1) means linearize (all on one line). - */ - - if (width < 1) - fprintf(fp, "%.*s\n", (int)(len), seq); - else - { - long rest = len; - for(unsigned long i=0; i"); - if (opt_relabel || opt_relabel_sha1 || opt_relabel_md5) - { - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp, seq, len); - else if (opt_relabel_md5) - fprint_seq_digest_md5(fp, seq, len); - else - fprintf(fp, "%s%d", opt_relabel, ordinal); - - if (opt_sizeout) - fprintf(fp, ";size=%u;", abundance); - - if (opt_relabel_keep) - fprintf(fp, " %s", header); - } - else if (opt_sizeout) - { - abundance_fprint_header_with_size(global_abundance, - fp, - header, - header_len, - abundance); - } - else if (opt_xsize) - { - abundance_fprint_header_strip_size(global_abundance, - fp, - header, - header_len); - } - else - { - fprintf(fp, "%s", header); - } - fprintf(fp, "\n"); - - fasta_print_sequence(fp, seq, len, opt_fasta_width); -} - -void fasta_print_db_relabel(FILE * fp, - unsigned long seqno, - int ordinal) -{ - fasta_print_relabel(fp, - db_getsequence(seqno), - db_getsequencelen(seqno), - db_getheader(seqno), - db_getheaderlen(seqno), - db_getabundance(seqno), - ordinal); -} - -void fasta_print_db_sequence(FILE * fp, unsigned long seqno) -{ - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); -} - -void fasta_print_db(FILE * fp, unsigned long seqno) -{ - char * hdr = db_getheader(seqno); - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - - fasta_print_header(fp, hdr); - fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); -} - -void fasta_print_db_size(FILE * fp, unsigned long seqno, unsigned long size) -{ - char * hdr = db_getheader(seqno); - int hdrlen = db_getheaderlen(seqno); - - fprintf(fp, ">"); - abundance_fprint_header_with_size(global_abundance, - fp, - hdr, - hdrlen, - size); - fprintf(fp, "\n"); - - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - - fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); -} - -void fasta_print_db_strip_size(FILE * fp, unsigned long seqno) -{ - /* write FASTA but remove abundance information, as with --xsize option */ - - char * hdr = db_getheader(seqno); - int hdrlen = db_getheaderlen(seqno); - - fprintf(fp, ">"); - abundance_fprint_header_strip_size(global_abundance, - fp, - hdr, - hdrlen); - fprintf(fp, "\n"); - - char * seq = db_getsequence(seqno); - long seqlen = db_getsequencelen(seqno); - - fasta_print_sequence(fp, seq, seqlen, opt_fasta_width); -} - diff --git a/source/vsearch_src/fasta.h b/source/vsearch_src/fasta.h deleted file mode 100755 index df5c4c72..00000000 --- a/source/vsearch_src/fasta.h +++ /dev/null @@ -1,144 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -struct fasta_buffer_s -{ - char * data; - unsigned long length; - unsigned long alloc; - unsigned long position; -}; - -struct fasta_s -{ - FILE * fp; - -#ifdef HAVE_ZLIB_H - gzFile fp_gz; -#endif - -#ifdef HAVE_BZLIB_H - BZFILE * fp_bz; -#endif - - struct fasta_buffer_s file_buffer; - struct fasta_buffer_s header_buffer; - struct fasta_buffer_s sequence_buffer; - - unsigned long file_size; - unsigned long file_position; - - unsigned long lineno; - unsigned long lineno_start; - long seqno; - - unsigned long stripped_all; - unsigned long stripped[256]; - - int format; -}; - -typedef struct fasta_s * fasta_handle; - -/* fasta input */ - -fasta_handle fasta_open(const char * filename); -void fasta_close(fasta_handle h); -bool fasta_next(fasta_handle h, - bool truncateatspace, - char * char_mapping); -unsigned long fasta_get_position(fasta_handle h); -unsigned long fasta_get_size(fasta_handle h); -unsigned long fasta_get_lineno(fasta_handle h); -unsigned long fasta_get_seqno(fasta_handle h); -char * fasta_get_header(fasta_handle h); -char * fasta_get_sequence(fasta_handle h); -unsigned long fasta_get_header_length(fasta_handle h); -unsigned long fasta_get_sequence_length(fasta_handle h); -long fasta_get_abundance(fasta_handle h); - -/* fasta output */ - -void fasta_print_header(FILE * fp, const char * hdr); - -void fasta_print_sequence(FILE * fp, char * seq, - unsigned long len, int width); - -void fasta_print(FILE * fp, const char * hdr, - char * seq, unsigned long len); - -void fasta_print_relabel(FILE * fp, - char * seq, - int len, - char * header, - int header_len, - int abundance, - int ordinal); - -void fasta_print_db(FILE * fp, unsigned long seqno); - -void fasta_print_db_sequence(FILE * fp, unsigned long seqno); - -void fasta_print_db_size(FILE * fp, unsigned long seqno, - unsigned long size); - -void fasta_print_db_strip_size(FILE * fp, unsigned long seqno); - -void fasta_print_db_relabel(FILE * fp, unsigned long seqno, int ordinal); diff --git a/source/vsearch_src/fastq.cc b/source/vsearch_src/fastq.cc deleted file mode 100755 index f44d5902..00000000 --- a/source/vsearch_src/fastq.cc +++ /dev/null @@ -1,818 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -#define FASTQ_BUFFER_ALLOC 8192 - -#ifdef HAVE_BZLIB_H -#define BZ_VERBOSE_0 0 -#define BZ_VERBOSE_1 1 -#define BZ_VERBOSE_2 2 -#define BZ_VERBOSE_3 3 -#define BZ_VERBOSE_4 4 -#define BZ_MORE_MEM 0 /* faster decompression using more memory */ -#define BZ_LESS_MEM 1 /* slower decompression but requires less memory */ -#endif - -#define FORMAT_PLAIN 1 -#define FORMAT_BZIP 2 -#define FORMAT_GZIP 3 - -static unsigned char MAGIC_GZIP[] = "\x1f\x8b"; -static unsigned char MAGIC_BZIP[] = "BZ"; - -static char map_identity[256]; - -void fastq_fatal(unsigned long lineno, const char * msg) -{ - char * string; - if (sprintf(string, - "Invalid line %lu in FASTQ file: %s", - lineno, - msg) == -1) - fatal("Out of memory"); - - if (string) - { - fatal(string); - free(string); - } - else - fatal("Out of memory"); -} - -void buffer_init(struct fastq_buffer_s * buffer) -{ - buffer->alloc = FASTQ_BUFFER_ALLOC; - buffer->data = (char*) xmalloc(buffer->alloc); - buffer->data[0] = 0; - buffer->length = 0; - buffer->position = 0; -} - -void buffer_free(struct fastq_buffer_s * buffer) -{ - if (buffer->data) - free(buffer->data); - buffer->data = 0; - buffer->alloc = 0; - buffer->length = 0; - buffer->position = 0; -} - -void buffer_makespace(struct fastq_buffer_s * buffer, unsigned long x) -{ - /* make sure there is space for x more chars in buffer */ - - if (buffer->length + x > buffer->alloc) - { - /* alloc space for x more characters, - but round up to nearest block size */ - buffer->alloc = - ((buffer->length + x + FASTQ_BUFFER_ALLOC - 1) / FASTQ_BUFFER_ALLOC) - * FASTQ_BUFFER_ALLOC; - buffer->data = (char*) xrealloc(buffer->data, buffer->alloc); - } -} - -void buffer_truncate(struct fastq_buffer_s * buffer, bool truncateatspace) -{ - /* Truncate the zero-terminated header string by inserting a new - terminator (zero byte) at the first space/tab character - (if truncateatspace) or first linefeed. */ - - if (truncateatspace) - buffer->length = strcspn(buffer->data, " \t\n"); - else - buffer->length = strcspn(buffer->data, "\n"); - - buffer->data[buffer->length] = 0; -} - - -fastq_handle fastq_open(const char * filename) -{ - fastq_handle h = (fastq_handle) xmalloc(sizeof(struct fastq_s)); - - h->fp = NULL; - h->fp = fopen(filename, "rb"); - if(!h->fp) - fatal("Error: Unable to open fastq file for reading (%s)", filename); - - /* detect compression (plain, gzipped or bzipped) */ - - unsigned char magic[2]; - h->format = FORMAT_PLAIN; - if (fread(&magic, 1, 2, h->fp) >= 2) - { - if (!memcmp(magic, MAGIC_GZIP, 2)) - h->format = FORMAT_GZIP; - else if (!memcmp(magic, MAGIC_BZIP, 2)) - h->format = FORMAT_BZIP; - } - - /* Get size of original (uncompressed) file */ - - if (fseek(h->fp, 0, SEEK_END)) - fatal("Error: Unable to seek in fastq file (%s)", filename); - h->file_size = ftell(h->fp); - rewind(h->fp); - - if (h->format == FORMAT_GZIP) - { - /* GZIP: Keep original file open, then open as bzipped file as well */ -#ifdef HAVE_ZLIB_H - if (!gz_lib) - fatal("Files compressed with gzip are not supported"); - if (! (h->fp_gz = (*gzdopen_p)(fileno(h->fp), "rb"))) - fatal("Unable to open gzip compressed fastq file (%s)", filename); -#else - fatal("Files compressed with gzip are not supported"); -#endif - } - - if (h->format == FORMAT_BZIP) - { - /* BZIP2: Keep original file open, then open as bzipped file as well */ -#ifdef HAVE_ZLIB_H - if (!bz2_lib) - fatal("Files compressed with bzip2 are not supported"); - int bzError; - if (! (h->fp_bz = (*BZ2_bzReadOpen_p)(& bzError, h->fp, - BZ_VERBOSE_0, BZ_MORE_MEM, - NULL, 0))) - fatal("Unable to open bzip2 compressed fastq file (%s)", filename); -#else - fatal("Files compressed with bzip2 are not supported"); -#endif - } - - h->stripped_all = 0; - - for(int i=0; i<256; i++) - h->stripped[i] = 0; - - h->file_position = 0; - - buffer_init(& h->file_buffer); - buffer_init(& h->header_buffer); - buffer_init(& h->sequence_buffer); - buffer_init(& h->quality_buffer); - - h->lineno = 1; - h->lineno_start = 1; - h->seqno = -1; - - for(int i=0; i<256; i++) - map_identity[i] = i; - - return h; -} - -void fastq_close(fastq_handle h) -{ - /* Warn about stripped chars */ - - if (h->stripped_all) - { - fprintf(stderr, "WARNING: invalid characters stripped from fastq file:"); - for (int i=0; i<256;i++) - if (h->stripped[i]) - fprintf(stderr, " %c(%lu)", i, h->stripped[i]); - fprintf(stderr, "\n"); - - if (opt_log) - { - fprintf(fp_log, "WARNING: invalid characters stripped from fastq file:"); - for (int i=0; i<256;i++) - if (h->stripped[i]) - fprintf(fp_log, " %c(%lu)", i, h->stripped[i]); - fprintf(fp_log, "\n"); - } - } - -#ifdef HAVE_BZLIB_H - int bz_error; -#endif - - switch(h->format) - { - case FORMAT_PLAIN: - fclose(h->fp); - h->fp = 0; - break; - - case FORMAT_GZIP: -#ifdef HAVE_ZLIB_H - (*gzclose_p)(h->fp_gz); - h->fp_gz = 0; - break; -#endif - - case FORMAT_BZIP: -#ifdef HAVE_BZLIB_H - (*BZ2_bzReadClose_p)(&bz_error, h->fp_bz); - h->fp_bz = 0; - break; -#endif - - default: - fatal("Internal error"); - } - - buffer_free(& h->file_buffer); - buffer_free(& h->header_buffer); - buffer_free(& h->sequence_buffer); - buffer_free(& h->quality_buffer); - - h->file_size = 0; - h->file_position = 0; - - h->lineno = 0; - h->seqno = -1; - - free(h); - h=0; -} - - -unsigned long fastq_file_fill_buffer(fastq_handle h) -{ - /* read more data if necessary */ - unsigned long rest = h->file_buffer.length - h->file_buffer.position; - - if (rest > 0) - return rest; - else - { - unsigned long space = h->file_buffer.alloc - h->file_buffer.length; - - if (space == 0) - { - /* back to beginning of buffer */ - h->file_buffer.position = 0; - h->file_buffer.length = 0; - space = h->file_buffer.alloc; - } - - int bytes_read = 0; - -#ifdef HAVE_BZLIB_H - int bzError = 0; -#endif - - switch(h->format) - { - case FORMAT_PLAIN: - bytes_read = fread(h->file_buffer.data - + h->file_buffer.position, - 1, - space, - h->fp); - break; - - case FORMAT_GZIP: -#ifdef HAVE_ZLIB_H - bytes_read = (*gzread_p)(h->fp_gz, - h->file_buffer.data - + h->file_buffer.position, - space); - if (bytes_read < 0) - fatal("Error reading gzip compressed fastq file"); - break; -#endif - - case FORMAT_BZIP: -#ifdef HAVE_BZLIB_H - bytes_read = (*BZ2_bzRead_p)(& bzError, - h->fp_bz, - h->file_buffer.data - + h->file_buffer.position, - space); - if ((bytes_read < 0) || - ! ((bzError == BZ_OK) || - (bzError == BZ_STREAM_END) || - (bzError == BZ_SEQUENCE_ERROR))) - fatal("Error reading bzip2 compressed fastq file"); - break; -#endif - - default: - fatal("Internal error"); - } - - h->file_buffer.length += bytes_read; - return bytes_read; - } -} - -void buffer_extend(struct fastq_buffer_s * dest_buffer, - char * source_buf, - unsigned long len) -{ - buffer_makespace(dest_buffer, len+1); - memcpy(dest_buffer->data + dest_buffer->length, - source_buf, - len); - dest_buffer->length += len; - dest_buffer->data[dest_buffer->length] = 0; -} - -void buffer_filter_extend(fastq_handle h, - struct fastq_buffer_s * dest_buffer, - char * source_buf, - unsigned long len, - unsigned int * char_action, - char * char_mapping, - unsigned long lineno_start) -{ - buffer_makespace(dest_buffer, len+1); - - /* Strip unwanted characters from the string and raise warnings or - errors on certain characters. */ - - unsigned long lineno = lineno_start; - - char * p = source_buf; - char * d = dest_buffer->data + dest_buffer->length; - char * q = d; - char msg[200]; - - for(unsigned long i = 0; i < len; i++) - { - char c = *p++; - char m = char_action[(int)c]; - - switch(m) - { - case 0: - /* stripped */ - h->stripped_all++; - h->stripped[(int)c]++; - break; - - case 1: - /* legal character */ - *q++ = char_mapping[(int)(c)]; - break; - - case 2: - /* fatal character */ - if ((c>=32) && (c<127)) - snprintf(msg, - 200, - "Illegal character '%c'", - c); - else - snprintf(msg, - 200, - "Illegal unprintable character %#.2x (hexadecimal)", - c); - fastq_fatal(lineno, msg); - break; - - case 3: - /* silently stripped chars (whitespace) */ - break; - - case 4: - /* newline (silently stripped) */ - lineno++; - break; - } - } - - /* add zero after sequence */ - *q = 0; - dest_buffer->length += q - d; -} - -bool fastq_next(fastq_handle h, - bool truncateatspace, - char * char_mapping) -{ - h->header_buffer.length = 0; - h->header_buffer.data[0] = 0; - h->sequence_buffer.length = 0; - h->sequence_buffer.data[0] = 0; - h->quality_buffer.length = 0; - h->quality_buffer.data[0] = 0; - - h->lineno_start = h->lineno; - - unsigned long rest = fastq_file_fill_buffer(h); - - /* check end of file */ - - if (rest == 0) - return 0; - - /* read header */ - - /* check initial @ character */ - - if (h->file_buffer.data[h->file_buffer.position] != '@') - fastq_fatal(h->lineno, "Header line must start with '@' character"); - h->file_buffer.position++; - rest--; - - char * lf = 0; - while (lf == 0) - { - /* get more data if buffer empty */ - rest = fastq_file_fill_buffer(h); - if (rest == 0) - fastq_fatal(h->lineno, "Unexpected end of file"); - - /* find LF */ - lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, - '\n', - rest); - - /* copy to header buffer */ - unsigned long len = rest; - if (lf) - { - /* LF found, copy up to and including LF */ - len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; - h->lineno++; - } - buffer_extend(& h->header_buffer, - h->file_buffer.data + h->file_buffer.position, - len); - h->file_buffer.position += len; - rest -= len; - } - - unsigned long lineno_seq = h->lineno; - - /* read sequence line(s) */ - lf = 0; - while (1) - { - /* get more data, if necessary */ - rest = fastq_file_fill_buffer(h); - - /* cannot end here */ - if (rest == 0) - fastq_fatal(h->lineno, "Unexpected end of file"); - - /* end when new line starting with + is seen */ - if (lf && (h->file_buffer.data[h->file_buffer.position] == '+')) - break; - - /* find LF */ - lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, - '\n', rest); - - /* copy to sequence buffer */ - unsigned long len = rest; - if (lf) - { - /* LF found, copy up to and including LF */ - len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; - h->lineno++; - } - - buffer_filter_extend(h, - & h->sequence_buffer, - h->file_buffer.data + h->file_buffer.position, - len, - char_fq_action_seq, char_mapping, lineno_seq); - h->file_buffer.position += len; - rest -= len; - } - - if (h->sequence_buffer.length == 0) - fastq_fatal(lineno_seq, "Empty sequence line"); - - unsigned long lineno_plus = h->lineno; - - /* read + line */ - fastq_buffer_s plusline_buffer; - buffer_init(&plusline_buffer); - - /* skip + character */ - h->file_buffer.position++; - rest--; - - lf = 0; - while (lf == 0) - { - /* get more data if buffer empty */ - rest = fastq_file_fill_buffer(h); - - /* cannot end here */ - if (rest == 0) - fastq_fatal(h->lineno, "Unexpected end of file"); - - /* find LF */ - lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, - '\n', - rest); - /* copy to plusline buffer */ - unsigned long len = rest; - if (lf) - { - /* LF found, copy up to and including LF */ - len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; - h->lineno++; - } - buffer_extend(& plusline_buffer, - h->file_buffer.data + h->file_buffer.position, - len); - h->file_buffer.position += len; - rest -= len; - } - - /* check that the plus line is empty or identical to @ line */ - - bool plusline_invalid = 0; - if (h->header_buffer.length == plusline_buffer.length) - { - if (memcmp(h->header_buffer.data, - plusline_buffer.data, - h->header_buffer.length)) - plusline_invalid = 1; - } - else - { - if ((plusline_buffer.length > 2) || - ((plusline_buffer.length == 2) && (plusline_buffer.data[0] != '\r'))) - plusline_invalid = 1; - } - if (plusline_invalid) - fastq_fatal(lineno_plus, - "'+' line must be empty or identical to header"); - - buffer_free(&plusline_buffer); - - /* read quality line(s) */ - - unsigned long lineno_qual = h->lineno; - - lf = 0; - while (1) - { - /* get more data, if necessary */ - rest = fastq_file_fill_buffer(h); - - /* end if no more data */ - if (rest == 0) - break; - - /* end if next entry starts : LF + '@' + correct length */ - if (lf && - (h->file_buffer.data[h->file_buffer.position] == '@') && - (h->quality_buffer.length == h->sequence_buffer.length)) - break; - - /* find LF */ - lf = (char *) memchr(h->file_buffer.data + h->file_buffer.position, - '\n', rest); - - /* copy to quality buffer */ - unsigned long len = rest; - if (lf) - { - /* LF found, copy up to and including LF */ - len = lf - (h->file_buffer.data + h->file_buffer.position) + 1; - h->lineno++; - } - buffer_filter_extend(h, - & h->quality_buffer, - h->file_buffer.data + h->file_buffer.position, - len, - char_fq_action_qual, map_identity, lineno_qual); - h->file_buffer.position += len; - rest -= len; - } - - if (h->quality_buffer.length == 0) - fastq_fatal(lineno_seq, "Empty quality line"); - - if (h->sequence_buffer.length != h->quality_buffer.length) - fastq_fatal(lineno_qual, - "Sequence and quality lines must be equally long"); - - buffer_truncate(& h->header_buffer, truncateatspace); - -#ifdef HAVE_ZLIB_H - if (h->format == FORMAT_GZIP) - { - /* Circumvent the missing gzoffset function in zlib 1.2.3 and earlier */ - int fd = dup(fileno(h->fp)); - h->file_position = lseek(fd, 0, SEEK_CUR); - close(fd); - } - else -#endif - h->file_position = ftell(h->fp); - - h->seqno++; - - return 1; -} - -char * fastq_get_quality(fastq_handle h) -{ - return h->quality_buffer.data; -} - -unsigned long fastq_get_quality_length(fastq_handle h) -{ - return h->quality_buffer.length; -} - -unsigned long fastq_get_position(fastq_handle h) -{ - return h->file_position; -} - -unsigned long fastq_get_size(fastq_handle h) -{ - return h->file_size; -} - -unsigned long fastq_get_lineno(fastq_handle h) -{ - return h->lineno_start; -} - -unsigned long fastq_get_seqno(fastq_handle h) -{ - return h->seqno; -} - -unsigned long fastq_get_header_length(fastq_handle h) -{ - return h->header_buffer.length; -} - -unsigned long fastq_get_sequence_length(fastq_handle h) -{ - return h->sequence_buffer.length; -} - -char * fastq_get_header(fastq_handle h) -{ - return h->header_buffer.data; -} - -char * fastq_get_sequence(fastq_handle h) -{ - return h->sequence_buffer.data; -} - -void fastq_print_header(FILE * fp, char * header) -{ - fprintf(fp, "@%s\n", header); -} - -void fastq_print_sequence(FILE * fp, char * sequence) -{ - fprintf(fp, "%s\n", sequence); -} - -void fastq_print_quality(FILE * fp, char * quality) -{ - fprintf(fp, "+\n%s\n", quality); -} - -void fastq_print(FILE * fp, char * header, char * sequence, char * quality) -{ - fastq_print_header(fp, header); - fastq_print_sequence(fp, sequence); - fastq_print_quality(fp, quality); -} - -void fastq_print_with_ee(FILE * fp, char * header, - char * sequence, char * quality, double ee) -{ - fprintf(fp, "@%s;ee=%6.4lf\n", header, ee); - fastq_print_sequence(fp, sequence); - fastq_print_quality(fp, quality); -} - -void fastq_print_relabel(FILE * fp, - char * seq, - int len, - char * header, - int header_len, - char * quality, - int abundance, - int ordinal) -{ - fprintf(fp, "@"); - if (opt_relabel || opt_relabel_sha1 || opt_relabel_md5) - { - if (opt_relabel_sha1) - fprint_seq_digest_sha1(fp, seq, len); - else if (opt_relabel_md5) - fprint_seq_digest_md5(fp, seq, len); - else - fprintf(fp, "%s%d", opt_relabel, ordinal); - - if (opt_sizeout) - fprintf(fp, ";size=%u;", abundance); - - if (opt_relabel_keep) - fprintf(fp, " %s", header); - } - else if (opt_sizeout) - { - abundance_fprint_header_with_size(global_abundance, - fp, - header, - header_len, - abundance); - } - else if (opt_xsize) - { - abundance_fprint_header_strip_size(global_abundance, - fp, - header, - header_len); - } - else - { - fprintf(fp, "%s", header); - } - fprintf(fp, "\n"); - fastq_print_sequence(fp, seq); - fastq_print_quality(fp, quality); -} - -long fastq_get_abundance(fastq_handle h) -{ - return abundance_get(global_abundance, h->header_buffer.data); -} - -void fastq_print_db(FILE * fp, unsigned long seqno) -{ - char * hdr = db_getheader(seqno); - char * seq = db_getsequence(seqno); - char * qual = db_getquality(seqno); - - fastq_print_header(fp, hdr); - fastq_print_sequence(fp, seq); - fastq_print_quality(fp, qual); -} diff --git a/source/vsearch_src/fastq.h b/source/vsearch_src/fastq.h deleted file mode 100755 index 0bffae2e..00000000 --- a/source/vsearch_src/fastq.h +++ /dev/null @@ -1,135 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -struct fastq_buffer_s -{ - char * data; - unsigned long length; - unsigned long alloc; - unsigned long position; -}; - -struct fastq_s -{ - FILE * fp; - -#ifdef HAVE_ZLIB_H - gzFile fp_gz; -#endif - -#ifdef HAVE_BZLIB_H - BZFILE * fp_bz; -#endif - - struct fastq_buffer_s file_buffer; - - struct fastq_buffer_s header_buffer; - struct fastq_buffer_s sequence_buffer; - struct fastq_buffer_s quality_buffer; - - unsigned long file_size; - unsigned long file_position; - - unsigned long lineno; - unsigned long lineno_start; - long seqno; - - unsigned long stripped_all; - unsigned long stripped[256]; - - int format; - -}; - -typedef struct fastq_s * fastq_handle; - -fastq_handle fastq_open(const char * filename); -void fastq_close(fastq_handle h); -bool fastq_next(fastq_handle h, - bool truncateatspace, - char * char_mapping); -unsigned long fastq_get_position(fastq_handle h); -unsigned long fastq_get_size(fastq_handle h); -unsigned long fastq_get_lineno(fastq_handle h); -unsigned long fastq_get_seqno(fastq_handle h); -char * fastq_get_header(fastq_handle h); -char * fastq_get_sequence(fastq_handle h); -char * fastq_get_quality(fastq_handle h); -long fastq_get_abundance(fastq_handle h); -unsigned long fastq_get_header_length(fastq_handle h); -unsigned long fastq_get_sequence_length(fastq_handle h); -unsigned long fastq_get_quality_length(fastq_handle h); - -void fastq_print(FILE * fp, char * header, char * sequence, char * quality); - -void fastq_print_with_ee(FILE * fp, char * header, char * sequence, - char * quality, double ee); - -void fastq_print_relabel(FILE * fp, - char * seq, - int len, - char * header, - int header_len, - char * quality, - int abundance, - int ordinal); - - -void fastq_print_db(FILE * fp, unsigned long seqno); diff --git a/source/vsearch_src/fastqops.cc b/source/vsearch_src/fastqops.cc deleted file mode 100755 index d9330a80..00000000 --- a/source/vsearch_src/fastqops.cc +++ /dev/null @@ -1,1014 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -int fastq_get_qual(char q) -{ - int qual = q - opt_fastq_ascii; - char msg[200]; - - if (qual < opt_fastq_qmin) - { - snprintf(msg, 200, "FASTQ quality value (%d) below qmin (%ld)", - qual, opt_fastq_qmin); - fatal(msg); - } - else if (qual > opt_fastq_qmax) - { - snprintf(msg, 200, "FASTQ quality value (%d) above qmax (%ld)", - qual, opt_fastq_qmax); - fatal(msg); - } - return qual; -} - -void fastq_filter() -{ - fastq_handle h = fastq_open(opt_fastq_filter); - - unsigned long filesize = fastq_get_size(h); - - FILE * fp_fastaout = 0; - FILE * fp_fastqout = 0; - FILE * fp_fastaout_discarded = 0; - FILE * fp_fastqout_discarded = 0; - - if (opt_fastaout) - { - fp_fastaout = fopen(opt_fastaout, "w"); - if (!fp_fastaout) - fatal("Unable to open fasta output file for writing"); - } - - if (opt_fastqout) - { - fp_fastqout = fopen(opt_fastqout, "w"); - if (!fp_fastqout) - fatal("Unable to open fastq output file for writing"); - } - - if (opt_fastaout_discarded) - { - fp_fastaout_discarded = fopen(opt_fastaout_discarded, "w"); - if (!fp_fastaout_discarded) - fatal("Unable to open fasta output file for writing"); - } - - if (opt_fastqout_discarded) - { - fp_fastqout_discarded = fopen(opt_fastqout_discarded, "w"); - if (!fp_fastqout_discarded) - fatal("Unable to open fastq output file for writing"); - } - - unsigned long header_alloc = 0; - char * header = 0; - if (opt_relabel) - { - header_alloc = strlen(opt_relabel) + 25; - header = (char*) xmalloc(header_alloc); - } - - progress_init("Reading fastq file", filesize); - - long kept = 0; - long discarded = 0; - long truncated = 0; - - char hex_md5[LEN_HEX_DIG_MD5]; - char hex_sha1[LEN_HEX_DIG_SHA1]; - - while(fastq_next(h, 0, chrmap_no_change)) - { - long length = fastq_get_sequence_length(h); - char * d = fastq_get_header(h); - char * p = fastq_get_sequence(h); - char * q = fastq_get_quality(h); - - /* strip initial part */ - if (opt_fastq_stripleft > 0) - { - if (opt_fastq_stripleft < length) - { - p += opt_fastq_stripleft; - q += opt_fastq_stripleft; - length -= opt_fastq_stripleft; - } - else - { - p += length; - q += length; - length = 0; - } - } - - /* truncate trailing part */ - if (opt_fastq_trunclen > 0) - { - if (length >= opt_fastq_trunclen) - length = opt_fastq_trunclen; - else - length = 0; - } - - /* quality truncation */ - for (long i = 0; i < length; i++) - { - int qual = fastq_get_qual(q[i]); - - if (qual <= opt_fastq_truncqual) - { - length = i; - break; - } - } - - /* count n's */ - long ncount = 0; - for (long i = 0; i < length; i++) - { - int pc = p[i]; - if ((pc == 'N') || (pc == 'n')) - ncount++; - } - - /* compute ee */ - double ee = 0.0; - for (long i = 0; i < length; i++) - { - int qual = fastq_get_qual(q[i]); - ee += exp10(- qual / 10.0); - } - - if ((length >= opt_fastq_minlen) && - ((opt_fastq_trunclen == 0) || (length >= opt_fastq_trunclen)) && - (ee <= opt_fastq_maxee) && - (ee / length <= opt_fastq_maxee_rate) && - (ncount <= opt_fastq_maxns)) - { - /* keep the sequence */ - - kept++; - - if ((unsigned long)(length) < fastq_get_sequence_length(h)) - { - truncated++; - p[length] = 0; - q[length] = 0; - } - - if (opt_fastaout) - { - fasta_print_relabel(fp_fastaout, - p, length, - d, fastq_get_header_length(h), - 1, kept); - } - if (opt_fastqout) - { - if (opt_relabel) - { - (void) snprintf(header, header_alloc, - "%s%ld", opt_relabel, kept); - d = header; - } - else if (opt_relabel_md5) - { - get_hex_seq_digest_md5(hex_md5, p, length); - d = hex_md5; - } - else if (opt_relabel_sha1) - { - get_hex_seq_digest_sha1(hex_sha1, p, length); - d = hex_sha1; - } - - if (opt_eeout) - fastq_print_with_ee(fp_fastqout, d, p, q, ee); - else - fastq_print(fp_fastqout, d, p, q); - } - } - else - { - /* discard the sequence */ - - discarded++; - - p = fastq_get_sequence(h); - q = fastq_get_quality(h); - - if (opt_fastaout_discarded) - { - fasta_print_relabel(fp_fastaout_discarded, - p, length, - d, fastq_get_header_length(h), - 1, discarded); - } - - if (opt_fastqout_discarded) - { - if (opt_relabel) - { - (void) snprintf(header, header_alloc, "%s%ld", opt_relabel, discarded); - d = header; - } - else if (opt_relabel_md5) - { - get_hex_seq_digest_md5(hex_md5, p, length); - d = hex_md5; - } - else if (opt_relabel_sha1) - { - get_hex_seq_digest_sha1(hex_sha1, p, length); - d = hex_sha1; - } - - if (opt_eeout) - fastq_print_with_ee(fp_fastqout_discarded, d, p, q, ee); - else - fastq_print(fp_fastqout_discarded, d, p, q); - } - } - - progress_update(fastq_get_position(h)); - } - progress_done(); - - fprintf(stderr, - "%ld sequences kept (of which %ld truncated), %ld sequences discarded.\n", - kept, - truncated, - discarded); - - if (header) - free(header); - - if (opt_fastaout) - fclose(fp_fastaout); - - if (opt_fastqout) - fclose(fp_fastqout); - - if (opt_fastaout_discarded) - fclose(fp_fastaout_discarded); - - if (opt_fastqout_discarded) - fclose(fp_fastqout_discarded); - - fastq_close(h); -} - -void fastq_chars() -{ - unsigned long sequence_chars[256]; - unsigned long quality_chars[256]; - unsigned long tail_chars[256]; - unsigned long total_chars = 0; - int maxrun[256]; - - for(int c=0; c<256; c++) - { - sequence_chars[c] = 0; - quality_chars[c] = 0; - tail_chars[c] = 0; - maxrun[c] = 0; - } - - fastq_handle h = fastq_open(opt_fastq_chars); - - unsigned long filesize = fastq_get_size(h); - - progress_init("Reading fastq file", filesize); - - unsigned long seq_count = 0; - - int qmin_n = 255, qmax_n = 0; - - while(fastq_next(h, 0, chrmap_upcase)) - { - long len = fastq_get_sequence_length(h); - char * p = fastq_get_sequence(h); - char * q = fastq_get_quality(h); - - seq_count++; - total_chars += len; - - int run_char = -1; - int run = 0; - - long i = 0; - while(i qmax_n) - qmax_n = qc; - } - - if (pc == run_char) - { - run++; - if (run > maxrun[run_char]) - maxrun[run_char] = run; - } - else - { - run_char = pc; - run = 0; - } - - i++; - } - - if (len >= opt_fastq_tail) - { - q = fastq_get_quality(h) + len - 1; - int tail_char = *q--; - int tail_len = 1; - while(*q-- == tail_char) - { - tail_len++; - if (tail_len >= opt_fastq_tail) - break; - } - if (tail_len >= opt_fastq_tail) - tail_chars[tail_char]++; - } - - progress_update(fastq_get_position(h)); - } - progress_done(); - - fastq_close(h); - - fprintf(stderr, "Read %lu sequences.\n", seq_count); - - char qmin = 0; - char qmax = 0; - - for(int c=0; c<=255; c++) - { - if (quality_chars[c]) - { - qmin = c; - break; - } - } - - for(int c=255; c>=0; c--) - { - if (quality_chars[c]) - { - qmax = c; - break; - } - } - - char fastq_ascii, fastq_qmin, fastq_qmax; - - if (qmin < 59) - fastq_ascii = 33; - else - fastq_ascii = 64; - - fprintf(stderr, "Qmin %d, QMax %d, Range %d\n", - qmin, qmax, qmax-qmin+1); - - fastq_qmax = qmax - fastq_ascii; - fastq_qmin = qmin - fastq_ascii; - - fprintf(stderr, "Guess: -fastq_qmin %d -fastq_qmax %d -fastq_ascii %d\n", - fastq_qmin, fastq_qmax, fastq_ascii); - - if (fastq_ascii == 64) - { - if (qmin < 64) - fprintf(stderr, "Guess: Solexa format (phred+64)\n"); - else if (qmin < 66) - fprintf(stderr, "Guess: Illumina 1.3+ format (phred+64)\n"); - else - fprintf(stderr, "Guess: Illumina 1.5+ format (phred+64)\n"); - } - else - { - if (qmax > 73) - fprintf(stderr, "Guess: Illumina 1.8+ format (phred+33)\n"); - else - fprintf(stderr, "Guess: Original Sanger format (phred+33)\n"); - } - - fprintf(stderr, "\n"); - fprintf(stderr, "Letter N Freq MaxRun\n"); - fprintf(stderr, "------ ---------- ------ ------\n"); - - for(int c=0; c<256; c++) - { - if (sequence_chars[c] > 0) - { - fprintf(stderr, " %c %10lu %5.1f%% %6d", - c, - sequence_chars[c], - 100.0 * sequence_chars[c] / total_chars, - maxrun[c]); - if ((c == 'N') || (c == 'n')) - { - if (qmin_n < qmax_n) - fprintf(stderr, " Q=%c..%c", qmin_n, qmax_n); - else - fprintf(stderr, " Q=%c", qmin_n); - } - fprintf(stderr, "\n"); - } - } - - fprintf(stderr, "\n"); - fprintf(stderr, "Char ASCII Freq Tails\n"); - fprintf(stderr, "---- ----- ------ ----------\n"); - - for(int c=qmin; c<=qmax; c++) - { - if (quality_chars[c] > 0) - { - fprintf(stderr, " '%c' %5d %5.1f%% %10lu\n", - c, - c, - 100.0 * quality_chars[c] / total_chars, - tail_chars[c]); - } - } -} - -double q2p(double q) -{ - return exp10(- q / 10.0); -} - -void fastq_stats() -{ - fastq_handle h = fastq_open(opt_fastq_stats); - - unsigned long filesize = fastq_get_size(h); - - progress_init("Reading fastq file", filesize); - - unsigned long seq_count = 0; - unsigned long symbols = 0; - - long read_length_alloc = 512; - - int * read_length_table = (int*) xmalloc(sizeof(int) * read_length_alloc); - memset(read_length_table, 0, sizeof(int) * read_length_alloc); - - int * qual_length_table = (int*) xmalloc(sizeof(int) * read_length_alloc * 256); - memset(qual_length_table, 0, sizeof(int) * read_length_alloc * 256); - - int * ee_length_table = (int *) xmalloc(sizeof(int) * read_length_alloc * 4); - memset(ee_length_table, 0, sizeof(int) * read_length_alloc * 4); - - int * q_length_table = (int *) xmalloc(sizeof(int) * read_length_alloc * 4); - memset(q_length_table, 0, sizeof(int) * read_length_alloc * 4); - - double * sumee_length_table = (double *) xmalloc(sizeof(double) * read_length_alloc); - memset(sumee_length_table, 0, sizeof(double) * read_length_alloc); - - long len_min = LONG_MAX; - long len_max = 0; - - int qmin = +1000; - int qmax = -1000; - - unsigned long quality_chars[256]; - for(int c=0; c<256; c++) - quality_chars[c] = 0; - - while(fastq_next(h, 0, chrmap_upcase)) - { - seq_count++; - - long len = fastq_get_sequence_length(h); - char * q = fastq_get_quality(h); - - /* update length statistics */ - - if (len+1 > read_length_alloc) - { - read_length_table = (int*) xrealloc(read_length_table, - sizeof(int) * (len+1)); - memset(read_length_table + read_length_alloc, 0, - sizeof(int) * (len + 1 - read_length_alloc)); - - qual_length_table = (int*) xrealloc(qual_length_table, - sizeof(int) * (len+1) * 256); - memset(qual_length_table + 256 * read_length_alloc, 0, - sizeof(int) * (len + 1 - read_length_alloc) * 256); - - ee_length_table = (int*) xrealloc(ee_length_table, - sizeof(int) * (len+1) * 4); - memset(ee_length_table + 4 * read_length_alloc, 0, - sizeof(int) * (len + 1 - read_length_alloc) * 4); - - q_length_table = (int*) xrealloc(q_length_table, - sizeof(int) * (len+1) * 4); - memset(q_length_table + 4 * read_length_alloc, 0, - sizeof(int) * (len + 1 - read_length_alloc) * 4); - - sumee_length_table = (double *) xrealloc(sumee_length_table, - sizeof(double) * (len+1)); - memset(sumee_length_table + read_length_alloc, 0, - sizeof(double) * (len + 1 - read_length_alloc)); - - read_length_alloc = len + 1; - } - - read_length_table[len]++; - - if (len < len_min) - len_min = len; - if (len > len_max) - len_max = len; - - /* update quality statistics */ - - symbols += len; - - double ee_limit[4] = { 1.0, 0.5, 0.25, 0.1 }; - - double ee = 0.0; - int qmin_this = 1000; - for(long i=0; i < len; i++) - { - int qc = q[i]; - - int qual = qc - opt_fastq_ascii; - if ((qual < opt_fastq_qmin) || (qual > opt_fastq_qmax)) - fatal("FASTQ quality value out of range"); - - quality_chars[qc]++; - if (qc < qmin) - qmin = qc; - if (qc > qmax) - qmax = qc; - - qual_length_table[256*i + qc]++; - - ee += q2p(qual); - - sumee_length_table[i] += ee; - - for(int z=0; z<4; z++) - { - if (ee <= ee_limit[z]) - ee_length_table[4*i+z]++; - else - break; - } - - if (qual < qmin_this) - qmin_this = qual; - - for(int z=0; z<4; z++) - { - if (qmin_this > 5*(z+1)) - q_length_table[4*i+z]++; - else - break; - } - } - - progress_update(fastq_get_position(h)); - } - progress_done(); - - /* compute various distributions */ - - int * length_dist = (int*) xmalloc(sizeof(int) * (len_max+1)); - long * symb_dist = (long*) xmalloc(sizeof(long) * (len_max+1)); - - double * rate_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); - double * avgq_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); - double * avgee_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); - double * avgp_dist = (double*) xmalloc(sizeof(double) * (len_max+1)); - - long length_accum = 0; - long symb_accum = 0; - - for(long i = 0; i <= len_max; i++) - { - length_accum += read_length_table[i]; - length_dist[i] = length_accum; - - symb_accum += seq_count - length_accum; - symb_dist[i] = symb_accum; - - long q = 0; - long x = 0; - double e_sum = 0.0; - for(int c=qmin; c<=qmax; c++) - { - int qual = c - opt_fastq_ascii; - x += qual_length_table[256*i + c]; - q += qual_length_table[256*i + c] * qual; - e_sum += qual_length_table[256*i + c] * q2p(qual); - } - avgq_dist[i] = 1.0 * q / x; - avgp_dist[i] = e_sum / x; - avgee_dist[i] = sumee_length_table[i] / x; - rate_dist[i] = avgee_dist[i] / (i+1); - } - - if (fp_log) - { - fprintf(fp_log, "\n"); - fprintf(fp_log, "\n"); - fprintf(fp_log, "Read length distribution\n"); - fprintf(fp_log, " L N Pct AccPct\n"); - fprintf(fp_log, "------- ---------- ------- -------\n"); - - for(long i = len_max; i >= len_min; i--) - { - if (read_length_table[i] > 0) - fprintf(fp_log, "%2s%5ld %10d %5.1lf%% %5.1lf%%\n", - (i == len_max ? ">=" : " "), - i, - read_length_table[i], - read_length_table[i] * 100.0 / seq_count, - 100.0 * (seq_count - length_dist[i-1]) / seq_count); - } - - fprintf(fp_log, "\n"); - fprintf(fp_log, "Q score distribution\n"); - fprintf(fp_log, "ASCII Q Pe N Pct AccPct\n"); - fprintf(fp_log, "----- --- ------- ---------- ------- -------\n"); - - long qual_accum = 0; - for(int c = qmax ; c >= qmin ; c--) - { - if (quality_chars[c] > 0) - { - qual_accum += quality_chars[c]; - fprintf(fp_log, - " %c %3ld %7.5lf %10lu %6.1lf%% %6.1lf%%\n", - c, - c - opt_fastq_ascii, - q2p(c - opt_fastq_ascii), - quality_chars[c], - 100.0 * quality_chars[c] / symbols, - 100.0 * qual_accum / symbols); - } - } - - fprintf(fp_log, "\n"); - fprintf(fp_log, " L PctRecs AvgQ P(AvgQ) AvgP AvgEE Rate RatePct\n"); - fprintf(fp_log, "----- ------- ---- ------- -------- ----- --------- --------\n"); - - for(long i = 2; i <= len_max; i++) - { - double PctRecs = 100.0 * (seq_count - length_dist[i-1]) / seq_count; - double AvgQ = avgq_dist[i-1]; - double AvgP = avgp_dist[i-1]; - double AvgEE = avgee_dist[i-1]; - double Rate = rate_dist[i-1]; - - fprintf(fp_log, - "%5ld %6.1lf%% %4.1lf %7.5lf %8.6lf %5.2lf %9.6lf %7.3lf%%\n", - i, - PctRecs, - AvgQ, - q2p(AvgQ), - AvgP, - AvgEE, - Rate, - 100.0 * Rate); - } - - fprintf(fp_log, "\n"); - fprintf(fp_log, " L 1.0000 0.5000 0.2500 0.1000 1.0000 0.5000 0.2500 0.1000\n"); - fprintf(fp_log, "----- ------- ------- ------- ------- ------- ------- ------- -------\n"); - - for(long i = len_max+1; i >= 1; i--) - { - long read_count[4]; - double read_percentage[4]; - - for(int z=0; z<4; z++) - { - if (i>=2) - read_count[z] = ee_length_table[4*(i-2)+z]; - else - read_count[z] = seq_count; - read_percentage[z] = 100.0 * read_count[z] / seq_count; - } - - if (read_count[0] > 0) - { - fprintf(fp_log, - "%5ld %7ld %7ld %7ld %7ld " - "%6.2lf%% %6.2lf%% %6.2lf%% %6.2lf%%\n", - i, - read_count[0], read_count[1], - read_count[2], read_count[3], - read_percentage[0], read_percentage[1], - read_percentage[2], read_percentage[3]); - } - } - - - fprintf(fp_log, "\n"); - fprintf(fp_log, "Truncate at first Q\n"); - fprintf(fp_log, " Len Q=5 Q=10 Q=15 Q=20\n"); - fprintf(fp_log, "----- ------ ------ ------ ------\n"); - - for(long i = len_max; i >= len_max/2; i--) - { - double read_percentage[4]; - - for(int z=0; z<4; z++) - read_percentage[z] = 100.0 * q_length_table[4*(i-1)+z] / seq_count; - - fprintf(fp_log, "%5ld %5.1lf%% %5.1lf%% %5.1lf%% %5.1lf%%\n", - i, - read_percentage[0], read_percentage[1], - read_percentage[2], read_percentage[3]); - } - - fprintf(fp_log, "\n"); - fprintf(fp_log, "%10lu Recs (%.1lfM), 0 too long\n", - seq_count, seq_count / 1.0e6); - fprintf(fp_log, "%10.1lf Avg length\n", 1.0 * symbols / seq_count); - fprintf(fp_log, "%9.1lfM Bases\n", symbols / 1.0e6); - } - - free(read_length_table); - free(qual_length_table); - free(ee_length_table); - free(q_length_table); - free(sumee_length_table); - - free(length_dist); - free(symb_dist); - free(rate_dist); - free(avgq_dist); - free(avgee_dist); - free(avgp_dist); - - fastq_close(h); - - fprintf(stderr, "Read %lu sequences.\n", seq_count); -} - -void fastx_revcomp() -{ - unsigned long buffer_alloc = 512; - char * seq_buffer = (char*) xmalloc(buffer_alloc); - char * qual_buffer = (char*) xmalloc(buffer_alloc); - - unsigned long header_alloc = 512; - char * header = (char*) xmalloc(header_alloc); - - unsigned long suffix_length = opt_label_suffix ? strlen(opt_label_suffix) : 0; - - fastx_handle h = fastx_open(opt_fastx_revcomp); - - if (!h) - fatal("Unrecognized file type (not proper FASTA or FASTQ format)"); - - if (opt_fastqout && ! h->is_fastq) - fatal("Cannot write FASTQ output with a FASTA input file, lacking quality scores"); - - unsigned long filesize = fastx_get_size(h); - - FILE * fp_fastaout = 0; - FILE * fp_fastqout = 0; - - if (opt_fastaout) - { - fp_fastaout = fopen(opt_fastaout, "w"); - if (!fp_fastaout) - fatal("Unable to open fasta output file for writing"); - } - - if (opt_fastqout) - { - fp_fastqout = fopen(opt_fastqout, "w"); - if (!fp_fastqout) - fatal("Unable to open fastq output file for writing"); - } - - if (h->is_fastq) - progress_init("Reading fastq file", filesize); - else - progress_init("Reading fasta file", filesize); - - while(fastx_next(h, 0, chrmap_no_change)) - { - /* header */ - - unsigned long hlen = fastx_get_header_length(h); - - if (hlen + suffix_length + 1 > header_alloc) - { - header_alloc = hlen + suffix_length + 1; - header = (char*) xrealloc(header, header_alloc); - } - - char * d = fastx_get_header(h); - - if (opt_label_suffix) - snprintf(header, header_alloc, "%s%s", d, opt_label_suffix); - else - snprintf(header, header_alloc, "%s", d); - - - /* sequence */ - - unsigned long length = fastx_get_sequence_length(h); - - if (length + 1 > buffer_alloc) - { - buffer_alloc = length + 1; - seq_buffer = (char *) xrealloc(seq_buffer, buffer_alloc); - qual_buffer = (char *) xrealloc(qual_buffer, buffer_alloc); - } - - char * p = fastx_get_sequence(h); - reverse_complement(seq_buffer, p, length); - - - /* quality values */ - - char * q = fastx_get_quality(h); - - if (fastx_is_fastq(h)) - { - /* reverse quality values */ - for(unsigned long i=0; i opt_fastq_qmax) - { - fprintf(stderr, - "\nFASTQ quality score (%d) above maximum (%ld) in entry no %lu starting on line %lu\n", - q, - opt_fastq_qmax, - fastq_get_seqno(h) + 1, - fastq_get_lineno(h)); - fatal("FASTQ quality score too high"); - } - if (q < opt_fastq_qminout) - q = opt_fastq_qminout; - if (q > opt_fastq_qmaxout) - q = opt_fastq_qmaxout; - q += opt_fastq_asciiout; - if (q < 33) - q = 33; - if (q > 126) - q = 126; - quality[i] = q; - } - quality[length] = 0; - - fastq_print(fp_fastqout, header, sequence, quality); - - progress_update(fastq_get_position(h)); - } - - progress_done(); - - fclose(fp_fastqout); - fastq_close(h); -} diff --git a/source/vsearch_src/fastqops.h b/source/vsearch_src/fastqops.h deleted file mode 100755 index 525155f8..00000000 --- a/source/vsearch_src/fastqops.h +++ /dev/null @@ -1,65 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void fastq_chars(); -void fastq_filter(); -void fastq_stats(); -void fastx_revcomp(); -void fastq_convert(); diff --git a/source/vsearch_src/fastxdetect.cc b/source/vsearch_src/fastxdetect.cc deleted file mode 100755 index 870011d3..00000000 --- a/source/vsearch_src/fastxdetect.cc +++ /dev/null @@ -1,224 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -#ifdef HAVE_BZLIB_H -#define BZ_VERBOSE_0 0 -#define BZ_VERBOSE_1 1 -#define BZ_VERBOSE_2 2 -#define BZ_VERBOSE_3 3 -#define BZ_VERBOSE_4 4 -#define BZ_MORE_MEM 0 /* faster decompression using more memory */ -#define BZ_LESS_MEM 1 /* slower decompression but requires less memory */ -#endif - -#define FORMAT_PLAIN 1 -#define FORMAT_BZIP 2 -#define FORMAT_GZIP 3 - -static unsigned char MAGIC_GZIP[] = "\x1f\x8b"; -static unsigned char MAGIC_BZIP[] = "BZ"; - -int fastx_detect(const char * filename) -{ -#ifdef HAVE_ZLIB_H - gzFile fp_gz = 0; -#endif - -#ifdef HAVE_BZLIB_H - BZFILE * fp_bz = 0; -#endif - - int format; - - FILE * fp = fopen(filename, "rb"); - if (!fp) - fatal("Error: Unable to open file for reading (%s)", filename); - - /* detect compression (plain, gzipped or bzipped) */ - - unsigned char magic[2]; - format = FORMAT_PLAIN; - if (fread(&magic, 1, 2, fp) >= 2) - { - if (!memcmp(magic, MAGIC_GZIP, 2)) - format = FORMAT_GZIP; - else if (!memcmp(magic, MAGIC_BZIP, 2)) - format = FORMAT_BZIP; - } - - rewind(fp); - - if (format == FORMAT_GZIP) - { - /* GZIP: Close ordinary file and open again as gzipped file */ -#ifdef HAVE_ZLIB_H - fclose(fp); - if (! (fp_gz = gzopen(filename, "rb"))) - fatal("Unable to open gzip compressed file (%s)", filename); -#else - fatal("Files compressed with gzip are not supported"); -#endif - } - - if (format == FORMAT_BZIP) - { - /* BZIP2: Keep original file open, then open as bzipped file as well */ -#ifdef HAVE_ZLIB_H - int bzError; - if (! (fp_bz = BZ2_bzReadOpen(& bzError, fp, - BZ_VERBOSE_0, BZ_MORE_MEM, NULL, 0))) - fatal("Unable to open bzip2 compressed file (%s)", filename); -#else - fatal("Files compressed with bzip2 are not supported"); -#endif - } - - /* read one char and see if it starts with > or @ */ - - const int BUFFERLEN = 1; - char buffer[BUFFERLEN]; - - int bytes_read = 0; - -#ifdef HAVE_BZLIB_H - int bzError = 0; -#endif - - switch(format) - { - case FORMAT_PLAIN: - bytes_read = fread(buffer, - 1, - BUFFERLEN, - fp); - break; - - case FORMAT_GZIP: -#ifdef HAVE_ZLIB_H - bytes_read = gzread(fp_gz, - buffer, - BUFFERLEN); - if (bytes_read < 0) - fatal("Error reading gzip compressed file (%s)", filename); - break; -#endif - - case FORMAT_BZIP: -#ifdef HAVE_BZLIB_H - bytes_read = BZ2_bzRead(& bzError, - fp_bz, - buffer, - BUFFERLEN); - if ((bytes_read < 0) || - ! ((bzError == BZ_OK) || - (bzError == BZ_STREAM_END) || - (bzError == BZ_SEQUENCE_ERROR))) - fatal("Error reading bzip2 compressed file (%s)", filename); - break; -#endif - - default: - fatal("Internal error"); - } - - if (bytes_read < BUFFERLEN) - fatal("Error reading file (%s)", filename); - - int filetype = 0; - if (buffer[0] == '>') - filetype = 1; - else if (buffer[0] == '@') - filetype = 2; - - /* close files */ - -#ifdef HAVE_BZLIB_H - int bz_error; -#endif - - switch(format) - { - case FORMAT_PLAIN: - fclose(fp); - fp = 0; - break; - - case FORMAT_GZIP: -#ifdef HAVE_ZLIB_H - gzclose(fp_gz); - fp_gz = 0; - break; -#endif - - case FORMAT_BZIP: -#ifdef HAVE_BZLIB_H - BZ2_bzReadClose(&bz_error, fp_bz); - fp_bz = 0; - break; -#endif - - default: - fatal("Internal error"); - } - - return filetype; -} diff --git a/source/vsearch_src/fastxdetect.h b/source/vsearch_src/fastxdetect.h deleted file mode 100755 index f74c0eba..00000000 --- a/source/vsearch_src/fastxdetect.h +++ /dev/null @@ -1,61 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -int fastx_detect(const char * filename); diff --git a/source/vsearch_src/linmemalign.cc b/source/vsearch_src/linmemalign.cc deleted file mode 100755 index 2711ef05..00000000 --- a/source/vsearch_src/linmemalign.cc +++ /dev/null @@ -1,708 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* - - Compute the optimal global alignment of two sequences - in linear space using the divide and conquer method. - - These functions are based on the following articles: - - Hirschberg (1975) Comm ACM 18:341-343 - - Myers & Miller (1988) CABIOS 4:11-17 - - The method has been adapted for the use of different - gap penalties for query/target/left/interior/right gaps. - - scorematrix consists of 16x16 long integers - - Sequences and alignment matrix: - A/a/i/query/q/downwards/vertical/top/bottom - B/b/j/target/t/rightwards/horizontal/left/right - - f corresponds to score ending with gap in A/query - EE corresponds to score ending with gap in B/target - -*/ - -LinearMemoryAligner::LinearMemoryAligner() -{ - scorematrix = 0; - - cigar_alloc = 0; - cigar_string = 0; - - vector_alloc = 0; - HH = 0; - EE = 0; - XX = 0; - YY = 0; -} - -LinearMemoryAligner::~LinearMemoryAligner() -{ - if (cigar_string) - free(cigar_string); - if (HH) - free(HH); - if (EE) - free(EE); - if (XX) - free(XX); - if (YY) - free(YY); -} - -long * LinearMemoryAligner::scorematrix_create(long match, long mismatch) -{ - long * newscorematrix = (long*) xmalloc(16*16*sizeof(long)); - - for(int i=0; i<16; i++) - for(int j=0; j<16; j++) - { - long value; - if ((i==0) || (j==0) || (i>4) || (j>4)) - value = 0; - else if (i==j) - value = match; - else - value = mismatch; - newscorematrix[16*i+j] = value; - } - return newscorematrix; -} - -void LinearMemoryAligner::alloc_vectors(size_t x) -{ - if (vector_alloc < x) - { - vector_alloc = x; - - if (HH) - free(HH); - if (EE) - free(EE); - if (XX) - free(XX); - if (YY) - free(YY); - - HH = (long*) xmalloc(vector_alloc * (sizeof(long))); - EE = (long*) xmalloc(vector_alloc * (sizeof(long))); - XX = (long*) xmalloc(vector_alloc * (sizeof(long))); - YY = (long*) xmalloc(vector_alloc * (sizeof(long))); - } -} - -void LinearMemoryAligner::cigar_flush() -{ - if (op_run > 0) - { - while (1) - { - /* try writing string until enough memory has been allocated */ - - long rest = cigar_alloc - cigar_length; - int n; - if (op_run > 1) - n = snprintf(cigar_string + cigar_length, - rest, - "%ld%c", op_run, op); - else - n = snprintf(cigar_string + cigar_length, - rest, - "%c", op); - if (n < 0) - { - fatal("snprintf returned a negative number.\n"); - } - else if (n >= rest) - { - cigar_alloc += MAX(n - rest + 1, 64); - cigar_string = (char*) xrealloc(cigar_string, cigar_alloc); - } - else - { - cigar_length += n; - break; - } - } - } -} - -void LinearMemoryAligner::cigar_add(char _op, long run) - { - if (op == _op) - op_run += run; - else - { - cigar_flush(); - op = _op; - op_run = run; - } - } - -void LinearMemoryAligner::show_matrix() -{ - for(int i=0; i<16; i++) - { - printf("%2d:", i); - for(int j=0; j<16; j++) - printf(" %2ld", scorematrix[16*i+j]); - printf("\n"); - } -} - -void LinearMemoryAligner::diff(long a_start, - long b_start, - long a_len, - long b_len, - bool gap_b_left, /* gap open left of b */ - bool gap_b_right, /* gap open right of b */ - bool a_left, /* includes left end of a */ - bool a_right, /* includes right end of a */ - bool b_left, /* includes left end of b */ - bool b_right) /* includes right end of b */ -{ - if (b_len == 0) - { - /* B and possibly A is empty */ - if (a_len > 0) - { - // Delete a_len from A - // AAA - // --- - - cigar_add('D', a_len); - } - } - else if (a_len == 0) - { - /* A is empty, B is not */ - - // Delete b_len from B - // --- - // BBB - - cigar_add('I', b_len); - } - else if (a_len == 1) - { - /* - Convert 1 symbol from A to b_len symbols from B - b_len >= 1 - */ - - - long MaxScore; - long best; - - long Score = 0; - - /* First possibility */ - - // Delete 1 from A, Insert b_len from B - // A---- - // -BBBB - - /* gap penalty for gap in B of length 1 */ - - if (! gap_b_left) - Score -= b_left ? go_t_l : go_t_i; - - Score -= b_left ? ge_t_l : ge_t_i; - - /* gap penalty for gap in A of length b_len */ - - Score -= a_right ? go_q_r + b_len * ge_q_r : go_q_i + b_len * ge_q_i; - - MaxScore = Score; - best = -1; - - - /* Second possibility */ - - // Insert b_len from B, Delete 1 from A - // ----A - // BBBB- - - /* gap penalty for gap in A of length b_len */ - - Score -= a_left ? go_q_l + b_len * ge_q_l : go_q_i + b_len * ge_q_i; - - /* gap penalty for gap in B of length 1 */ - - if (! gap_b_right) - Score -= b_right ? go_t_r : go_t_i; - - Score -= b_right ? ge_t_r : ge_t_i; - - if (Score > MaxScore) - { - MaxScore = Score; - best = b_len; - } - - - /* Third possibility */ - - for (long j = 0; j < b_len; j++) - { - // Insert zero or more from B, replace 1, insert rest of B - // -A-- - // BBBB - - Score = 0; - - if (j > 0) - Score -= a_left ? go_q_l + j * ge_q_l : go_q_i + j * ge_q_i; - - Score += subst_score(a_start, b_start + j); - - if (j < b_len - 1) - Score -= a_right ? - go_q_r + (b_len-1-j) * ge_q_r : - go_q_i + (b_len-1-j) * ge_q_i; - - if (Score > MaxScore) - { - MaxScore = Score; - best = j; - } - } - - if (best == -1) - { - cigar_add('D', 1); - cigar_add('I', b_len); - } - else if (best == b_len) - { - cigar_add('I', b_len); - cigar_add('D', 1); - } - else - { - if (best > 0) - cigar_add('I', best); - cigar_add('M', 1); - if (best < b_len - 1) - cigar_add('I', b_len - 1 - best); - } - } - else - { - /* a_len >= 2, b_len >= 1 */ - - long I = a_len / 2; - long i, j; - - // Compute HH & EE in forward phase - // Upper part - - /* initialize HH and EE for values corresponding to - empty seq A vs B of j symbols, - i.e. a gap of length j in A */ - - HH[0] = 0; - EE[0] = 0; - - for (j = 1; j <= b_len; j++) - { - HH[j] = - (a_left ? go_q_l + j * ge_q_l : go_q_i + j * ge_q_i); - EE[j] = LONG_MIN; - } - - /* compute matrix */ - - for (i = 1; i <= I; i++) - { - long p = HH[0]; - - long h = - (b_left ? - (gap_b_left ? 0 : go_t_l) + i * ge_t_l : - (gap_b_left ? 0 : go_t_i) + i * ge_t_i); - - HH[0] = h; - long f = LONG_MIN; - - for (j = 1; j <= b_len; j++) - { - f = MAX(f, h - go_q_i) - ge_q_i; - if (b_right && (j==b_len)) - EE[j] = MAX(EE[j], HH[j] - go_t_r) - ge_t_r; - else - EE[j] = MAX(EE[j], HH[j] - go_t_i) - ge_t_i; - - h = p + subst_score(a_start + i - 1, b_start + j - 1); - - if (f > h) - h = f; - if (EE[j] > h) - h = EE[j]; - p = HH[j]; - HH[j] = h; - } - } - - EE[0] = HH[0]; - - // Compute XX & YY in reverse phase - // Lower part - - /* initialize XX and YY */ - - XX[0] = 0; - YY[0] = 0; - - for (j = 1; j <= b_len; j++) - { - XX[j] = - (a_right ? go_q_r + j * ge_q_r : go_q_i + j * ge_q_i); - YY[j] = LONG_MIN; - } - - /* compute matrix */ - - for (i = 1; i <= a_len - I; i++) - { - long p = XX[0]; - - long h = - (b_right ? - (gap_b_right ? 0 : go_t_r) + i * ge_t_r : - (gap_b_right ? 0 : go_t_i) + i * ge_t_i); - XX[0] = h; - long f = LONG_MIN; - - for (j = 1; j <= b_len; j++) - { - f = MAX(f, h - go_q_i) - ge_q_i; - if (b_left && (j==b_len)) - YY[j] = MAX(YY[j], XX[j] - go_t_l) - ge_t_l; - else - YY[j] = MAX(YY[j], XX[j] - go_t_i) - ge_t_i; - - h = p + subst_score(a_start + a_len - i, b_start + b_len - j); - - if (f > h) - h = f; - if (YY[j] > h) - h = YY[j]; - p = XX[j]; - XX[j] = h; - } - } - - YY[0] = XX[0]; - - - /* find maximum score along division line */ - - long MaxScore0 = LONG_MIN; - long best0 = -1; - - /* solutions with diagonal at break */ - - for (j=0; j <= b_len; j++) - { - long Score = HH[j] + XX[b_len - j]; - - if (Score > MaxScore0) - { - MaxScore0 = Score; - best0 = j; - } - } - - long MaxScore1 = LONG_MIN; - long best1 = -1; - - /* solutions that end with a gap in b from both ends at break */ - - for (j=0; j <= b_len; j++) - { - long g; - if (b_left && (j==0)) - g = go_t_l; - else if (b_right && (j==b_len)) - g = go_t_r; - else - g = go_t_i; - - long Score = EE[j] + YY[b_len - j] + g; - - if (Score > MaxScore1) - { - MaxScore1 = Score; - best1 = j; - } - } - - long P; - long best; - - if (MaxScore0 > MaxScore1) - { - P = 0; - best = best0; - } - else if (MaxScore1 > MaxScore0) - { - P = 1; - best = best1; - } - else - { - if (best0 <= best1) - { - P = 0; - best = best0; - } - else - { - P = 1; - best = best1; - } - } - - /* recursively compute upper left and lower right parts */ - - if (P == 0) - { - diff(a_start, b_start, - I, best, - gap_b_left, false, - a_left, false, - b_left, b_right && (best == b_len)); - - diff(a_start + I, b_start + best, - a_len - I, b_len - best, - false, gap_b_right, - false, a_right, - b_left && (best == 0), b_right); - } - else if (P == 1) - { - diff(a_start, b_start, - I - 1, best, - gap_b_left, true, - a_left, false, - b_left, b_right && (best == b_len)); - - cigar_add('D', 2); - - diff(a_start + I + 1, b_start + best, - a_len - I - 1, b_len - best, - true, gap_b_right, - false, a_right, - b_left && (best == 0), b_right); - } - } -} - -void LinearMemoryAligner::set_parameters(long * _scorematrix, - long _gap_open_query_left, - long _gap_open_target_left, - long _gap_open_query_interior, - long _gap_open_target_interior, - long _gap_open_query_right, - long _gap_open_target_right, - long _gap_extension_query_left, - long _gap_extension_target_left, - long _gap_extension_query_interior, - long _gap_extension_target_interior, - long _gap_extension_query_right, - long _gap_extension_target_right) -{ - scorematrix = _scorematrix; - - /* a = query/q b = t/target */ - - go_q_l = _gap_open_query_left; - go_t_l = _gap_open_target_left; - go_q_i = _gap_open_query_interior; - go_t_i = _gap_open_target_interior; - go_q_r = _gap_open_query_right; - go_t_r = _gap_open_target_right; - ge_q_l = _gap_extension_query_left; - ge_t_l = _gap_extension_target_left; - ge_q_i = _gap_extension_query_interior; - ge_t_i = _gap_extension_target_interior; - ge_q_r = _gap_extension_query_right; - ge_t_r = _gap_extension_target_right; - - q = _gap_open_query_interior; - r = _gap_extension_query_interior; -} - - - -char * LinearMemoryAligner::align(char * _a_seq, - char * _b_seq, - long a_len, - long b_len) -{ - /* copy parameters */ - a_seq = _a_seq; - b_seq = _b_seq; - - /* init cigar operations */ - op = 0; - op_run = 0; - cigar_length = 0; - - /* allocate enough memory for vectors */ - alloc_vectors(b_len+1); - - /* perform alignment */ - diff(0, 0, a_len, b_len, 0, 0, true, true, true, true); - - /* ensure entire cigar has been written */ - cigar_flush(); - - /* return cigar */ - return cigar_string; -} - -void LinearMemoryAligner::alignstats(char * cigar, - char * _a_seq, - char * _b_seq, - long * _nwscore, - long * _nwalignmentlength, - long * _nwmatches, - long * _nwmismatches, - long * _nwgaps) -{ - a_seq = _a_seq; - b_seq = _b_seq; - - long nwscore = 0; - long nwalignmentlength = 0; - long nwmatches = 0; - long nwmismatches = 0; - long nwgaps = 0; - - long a_pos = 0; - long b_pos = 0; - - char * p = cigar; - - long g; - - while (*p) - { - long run = 1; - int scanlength = 0; - sscanf(p, "%ld%n", &run, &scanlength); - p += scanlength; - switch (*p++) - { - case 'M': - nwalignmentlength += run; - for(long k=0; k, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -class LinearMemoryAligner -{ - char op; - long op_run; - long cigar_alloc; - long cigar_length; - char * cigar_string; - - char * a_seq; - char * b_seq; - - long * scorematrix; - - long q; - long r; - - /* gap penalties for open/extension query/target left/interior/right */ - long go_q_l; - long go_t_l; - long go_q_i; - long go_t_i; - long go_q_r; - long go_t_r; - long ge_q_l; - long ge_t_l; - long ge_q_i; - long ge_t_i; - long ge_q_r; - long ge_t_r; - - size_t vector_alloc; - - long * HH; - long * EE; - long * XX; - long * YY; - - void cigar_flush(); - - void cigar_add(char _op, long run); - - inline long subst_score(long x, long y) - { - /* return substitution score for replacing symbol at position x in a - with symbol at position y in b */ - return scorematrix[chrmap_4bit[(int)(b_seq[y])] * 16 + - chrmap_4bit[(int)(a_seq[x])]]; - } - - void diff(long a_start, - long b_start, - long a_len, - long b_len, - bool gap_b_left, /* gap open left of b */ - bool gap_b_right, /* gap open right of b */ - bool a_left, /* includes left end of a */ - bool a_right, /* includes right end of a */ - bool b_left, /* includes left end of b */ - bool b_right); /* includes right end of b */ - - void alloc_vectors(size_t N); - - void show_matrix(); - -public: - - LinearMemoryAligner(); - - ~LinearMemoryAligner(); - - long * scorematrix_create(long match, long mismatch); - - void set_parameters(long * _scorematrix, - long _gap_open_query_left, - long _gap_open_target_left, - long _gap_open_query_interior, - long _gap_open_target_interior, - long _gap_open_query_right, - long _gap_open_target_right, - long _gap_extension_query_left, - long _gap_extension_target_left, - long _gap_extension_query_interior, - long _gap_extension_target_interior, - long _gap_extension_query_right, - long _gap_extension_target_right); - - char * align(char * _a_seq, - char * _b_seq, - long M, - long N); - - void alignstats(char * cigar, - char * a_seq, - char * b_seq, - long * nwscore, - long * nwalignmentlength, - long * nwmatches, - long * nwmismatches, - long * nwgaps); - -}; diff --git a/source/vsearch_src/maps.cc b/source/vsearch_src/maps.cc deleted file mode 100755 index 043212c1..00000000 --- a/source/vsearch_src/maps.cc +++ /dev/null @@ -1,432 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* - legal symbols: *abcdefghiklmnpqrstuvxyz (all except j and o), also upper case - fatal symbols: .- - fatal: ascii 0-26 except tab (9), newline (10 and 13), vt (11), formfeed (12) - stripped: !"#$&'()+,/0123456789:;<=>?@JO[\]^_`jo{|}~ and chrs 9-13, 127 - - includes both amino acid and nucleotide sequences, adapt to nt only -*/ - -char sym_nt_2bit[] = "ACGT"; -char sym_nt_4bit[] = "-ACGTRYSWKMDBHVN"; - -unsigned int char_fasta_action[256] = - { - /* - How to handle input characters for FASTA - - 0=stripped, 1=legal, 2=fatal, 3=silently stripped, 4=newline - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 4, 3, 3, 3, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 2, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 1, 1, 1, 1, 0, 0, 1, 1, 0, 0, 1, 0, 1, 1, 0, - 0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, - 0, 1, 1, 1, 1, 0, 0, 1, 1, 0, 0, 1, 0, 1, 1, 0, - 0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 - }; - -unsigned int char_fq_action_seq[256] = - { - /* - How to handle input characters for FASTQ: - All IUPAC characters are valid. - CR (^M) silently stripped. - LF is newline. - Rest is fatal - - 0=stripped, 1=legal, 2=fatal, 3=silently stripped, 4=newline - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 3, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 1, 1, 1, 1, 2, 2, 1, 1, 2, 2, 1, 2, 1, 1, 2, - 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, 2, 2, - 2, 1, 1, 1, 1, 2, 2, 1, 1, 2, 2, 1, 2, 1, 1, 2, - 2, 2, 1, 1, 1, 1, 1, 1, 2, 1, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - }; - -unsigned int char_fq_action_qual[256] = - { - /* - Quality characters, any from 33 to 126 is valid. - CR (^M) silently stripped. - LF is newline. - Rest is fatal - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 3, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, - 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 - }; - -unsigned int chrmap_2bit[256] = - { - /* - - Map from ascii to 2-bit nucleotide code - - Aa: 0 - Cc: 1 - Gg: 2 - TtUu: 3 - All others: 0 - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 1, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 1, 0, 0, 0, 2, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 3, 3, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 - }; - - -unsigned int chrmap_4bit[256] = - { - /* - - Map from ascii to 4-bit nucleotide code - - Aa: 1 - Cc: 2 - Gg: 3 - TtUu: 4 - Rr: 5 - Yy: 6 - Ss: 7 - Ww: 8 - Kk: 9 - Mm: 10 - Bb: 11 - Dd: 12 - Hh: 13 - Vv: 14 - Nn: 15 - Others: 0 - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 1, 11, 2, 12, 0, 0, 3, 13, 0, 0, 9, 0, 10, 15, 0, - 0, 0, 5, 7, 4, 4, 14, 8, 0, 6, 0, 0, 0, 0, 0, 0, - 0, 1, 11, 2, 12, 0, 0, 3, 13, 0, 0, 9, 0, 10, 15, 0, - 0, 0, 5, 7, 4, 4, 14, 8, 0, 6, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 - }; - -unsigned int chrmap_mask_lower[256] = - { - /* - - Should character be masked and not used for search ? - Mask everything but A, C, G, T and U. - All lower case letters are masked (soft masking). - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 - }; - -unsigned int chrmap_mask_ambig[256] = - { - /* - - Should character be masked and not used for search ? - Mask everything but A, C, G, T and U. - Lower case letters are NOT masked. - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 - }; - - -char chrmap_complement[256] = - { - /* - - Map from ascii to ascii, complementary nucleotide - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','T','V','G','H','N','N','C','D','N','N','M','N','K','N','N', - 'N','N','Y','S','A','A','B','W','N','R','N','N','N','N','N','N', - 'N','t','v','g','h','N','N','c','d','N','N','m','N','k','n','N', - 'N','N','y','s','a','a','b','w','N','r','N','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' - }; - -char chrmap_normalize[256] = - { - /* - - Map from ascii to ascii - Convert to upper case nucleotide, and replace U by T - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','A','B','C','D','N','N','G','H','N','N','K','N','M','N','N', - 'N','N','R','S','T','T','V','W','N','Y','N','N','N','N','N','N', - 'N','A','B','C','D','N','N','G','H','N','N','K','N','M','N','N', - 'N','N','R','S','T','T','V','W','N','Y','N','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' - }; - -char chrmap_upcase[256] = - { - /* - - Map from ascii to ascii - Convert to upper case nucleotide - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','A','B','C','D','E','F','G','H','I','J','K','L','M','N','O', - 'P','Q','R','S','T','U','V','W','X','Y','Z','N','N','N','N','N', - 'N','A','B','C','D','E','F','G','H','I','J','K','L','M','N','O', - 'P','Q','R','S','T','U','V','W','X','Y','Z','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' - }; - -char chrmap_no_change[256] = - { - /* - - Map from ascii to ascii - no change - - @ A B C D E F G H I J K L M N O - P Q R S T U V W X Y Z [ \ ] ^ _ - */ - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','A','B','C','D','E','F','G','H','I','J','K','L','M','N','O', - 'P','Q','R','S','T','U','V','W','X','Y','Z','N','N','N','N','N', - 'N','a','b','c','d','e','f','g','h','i','j','k','l','m','n','o', - 'p','q','r','s','t','u','v','w','x','y','z','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N', - 'N','N','N','N','N','N','N','N','N','N','N','N','N','N','N','N' - }; diff --git a/source/vsearch_src/maps.h b/source/vsearch_src/maps.h deleted file mode 100755 index fd518316..00000000 --- a/source/vsearch_src/maps.h +++ /dev/null @@ -1,74 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -extern char sym_nt_2bit[5]; -extern char sym_nt_4bit[17]; - -extern unsigned int char_fasta_action[256]; -extern unsigned int char_fq_action_seq[256]; -extern unsigned int char_fq_action_qual[256]; -extern unsigned int chrmap_2bit[256]; -extern unsigned int chrmap_4bit[256]; -extern unsigned int chrmap_mask_ambig[256]; -extern unsigned int chrmap_mask_lower[256]; -extern char chrmap_complement[256]; -extern char chrmap_normalize[256]; -extern char chrmap_upcase[256]; -extern char chrmap_no_change[256]; diff --git a/source/vsearch_src/mask.cc b/source/vsearch_src/mask.cc deleted file mode 100755 index 9fa5e79b..00000000 --- a/source/vsearch_src/mask.cc +++ /dev/null @@ -1,379 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static int dust_word = 3; -static int dust_level = 20; -static int dust_window = 64; -static int dust_window2 = dust_window >> 1; -static int word_count = 1 << (dust_word << 1); -static int bitmask = word_count - 1; - -int wo(int len, const char *s, int *beg, int *end) -{ - int l1 = len - dust_word + 1 - 5; /* smallest possible region is 8 */ - if (l1 < 0) - return 0; - - int bestv = 0; - int besti = 0; - int bestj = 0; - int counts[word_count]; - int words[dust_window]; - int word = 0; - - for (int j = 0; j < len; j++) - { - word <<= 2; - word |= chrmap_2bit[(int)(s[j])]; - words[j] = word & bitmask; - } - - for (int i=0; i < l1; i++) - { - memset(counts, 0, sizeof(counts)); - - int sum = 0; - - for (int j = dust_word-1; j bestv) - { - bestv = v; - besti = i; - bestj = j; - } - } - counts[word]++; - } - } - - *beg = besti; - *end = besti + bestj; - - return bestv; -} - -void dust(char * m, int len) -{ - int a, b; - - /* make a local copy of the original sequence */ - char * s = (char*) alloca(len+1); - strcpy(s, m); - - if (! opt_hardmask) - { - /* convert sequence to upper case unless hardmask in effect */ - for(int i=0; i < len; i++) - m[i] = toupper(m[i]); - m[len] = 0; - } - - for (int i=0; i < len; i += dust_window2) - { - int l = (len > i + dust_window) ? dust_window : len-i; - int v = wo(l, s+i, &a, &b); - - if (v > dust_level) - { - if (opt_hardmask) - for(int j=a+i; j<=b+i; j++) - m[j] = 'N'; - else - for(int j=a+i; j<=b+i; j++) - m[j] = s[j] | 0x20; - - if (b < dust_window2) - i += dust_window2 - b; - } - } -} - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - -static pthread_t * pthread; -static pthread_attr_t attr; -static pthread_mutex_t myMutex; - -#endif - -static int nextseq = 0; -static int seqcount = 0; - -void * dust_all_worker(void * vp) -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - while(1) - { - pthread_mutex_lock(&mutex); - int seqno = nextseq; - if (seqno < seqcount) - { - nextseq++; - progress_update(seqno); - pthread_mutex_unlock(&mutex); - dust(db_getsequence(seqno), db_getsequencelen(seqno)); - } - else - { - pthread_mutex_unlock(&mutex); - break; - } - } -#endif - return 0; -} - -void dust_all() -{ - nextseq = 0; - seqcount = db_getsequencecount(); - progress_init("Masking", seqcount); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); - - for(int t=0; t opt_max_unmasked_pct) - discarded_more++; - else - { - kept++; - - if (opt_fastaout) - fasta_print_db(fp_fastaout, i); - - if (opt_fastqout) - fastq_print_db(fp_fastqout, i); - } - - progress_update(i); - } - progress_done(); - - if (!opt_quiet) - { - if (opt_min_unmasked_pct > 0.0) - fprintf(stderr, "%d sequences with less than %.1lf%% unmasked residues discarded\n", discarded_less, opt_min_unmasked_pct); - if (opt_max_unmasked_pct < 100.0) - fprintf(stderr, "%d sequences with more than %.1lf%% unmasked residues discarded\n", discarded_more, opt_max_unmasked_pct); - fprintf(stderr, "%d sequences kept\n", kept); - } - - if (opt_log) - { - if (opt_min_unmasked_pct > 0.0) - fprintf(fp_log, "%d sequences with less than %.1lf%% unmasked residues discarded\n", discarded_less, opt_min_unmasked_pct); - if (opt_max_unmasked_pct < 100.0) - fprintf(fp_log, "%d sequences with more than %.1lf%% unmasked residues discarded\n", discarded_more, opt_max_unmasked_pct); - fprintf(fp_log, "%d sequences kept\n", kept); - } - - show_rusage(); - db_free(); - - if (fp_fastaout) - fclose(fp_fastaout); - if (fp_fastqout) - fclose(fp_fastqout); -} diff --git a/source/vsearch_src/mask.h b/source/vsearch_src/mask.h deleted file mode 100755 index 474bfa69..00000000 --- a/source/vsearch_src/mask.h +++ /dev/null @@ -1,72 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#define MASK_ERROR -1 -#define MASK_NONE 0 -#define MASK_DUST 1 -#define MASK_SOFT 2 - -void maskfasta(); -void fastx_mask(); - -void dust(char * m, int len); -void hardmask(char * m, int len); -void dust_all(); -void hardmask_all(); diff --git a/source/vsearch_src/md5.c b/source/vsearch_src/md5.c deleted file mode 100755 index 4bcd0cd9..00000000 --- a/source/vsearch_src/md5.c +++ /dev/null @@ -1,295 +0,0 @@ -/* - * This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. - * MD5 Message-Digest Algorithm (RFC 1321). - * - * Homepage: - * http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 - * - * Author: - * Alexander Peslyak, better known as Solar Designer - * - * This software was written by Alexander Peslyak in 2001. No copyright is - * claimed, and the software is hereby placed in the public domain. - * In case this attempt to disclaim copyright and place the software in the - * public domain is deemed null and void, then the software is - * Copyright (c) 2001 Alexander Peslyak and it is hereby released to the - * general public under the following terms: - * - * Redistribution and use in source and binary forms, with or without - * modification, are permitted. - * - * There's ABSOLUTELY NO WARRANTY, express or implied. - * - * (This is a heavily cut-down "BSD license".) - * - * This differs from Colin Plumb's older public domain implementation in that - * no exactly 32-bit integer data type is required (any 32-bit or wider - * unsigned integer data type will do), there's no compile-time endianness - * configuration, and the function prototypes match OpenSSL's. No code from - * Colin Plumb's implementation has been reused; this comment merely compares - * the properties of the two independent implementations. - * - * The primary goals of this implementation are portability and ease of use. - * It is meant to be fast, but not as fast as possible. Some known - * optimizations are not included to reduce source code size and avoid - * compile-time configuration. - */ - -#ifndef HAVE_OPENSSL - -#include - -#include "md5.h" - -/* - * The basic MD5 functions. - * - * F and G are optimized compared to their RFC 1321 definitions for - * architectures that lack an AND-NOT instruction, just like in Colin Plumb's - * implementation. - */ -#define F(x, y, z) ((z) ^ ((x) & ((y) ^ (z)))) -#define G(x, y, z) ((y) ^ ((z) & ((x) ^ (y)))) -#define H(x, y, z) ((x) ^ (y) ^ (z)) -#define I(x, y, z) ((y) ^ ((x) | ~(z))) - -/* - * The MD5 transformation for all four rounds. - */ -#define STEP(f, a, b, c, d, x, t, s) \ - (a) += f((b), (c), (d)) + (x) + (t); \ - (a) = (((a) << (s)) | (((a) & 0xffffffff) >> (32 - (s)))); \ - (a) += (b); - -/* - * SET reads 4 input bytes in little-endian byte order and stores them - * in a properly aligned word in host byte order. - * - * The check for little-endian architectures that tolerate unaligned - * memory accesses is just an optimization. Nothing will break if it - * doesn't work. - */ -#if defined(__i386__) || defined(__x86_64__) || defined(__vax__) -#define SET(n) \ - (*(MD5_u32plus *)&ptr[(n) * 4]) -#define GET(n) \ - SET(n) -#else -#define SET(n) \ - (ctx->block[(n)] = \ - (MD5_u32plus)ptr[(n) * 4] | \ - ((MD5_u32plus)ptr[(n) * 4 + 1] << 8) | \ - ((MD5_u32plus)ptr[(n) * 4 + 2] << 16) | \ - ((MD5_u32plus)ptr[(n) * 4 + 3] << 24)) -#define GET(n) \ - (ctx->block[(n)]) -#endif - -/* - * This processes one or more 64-byte data blocks, but does NOT update - * the bit counters. There are no alignment requirements. - */ -static void *body(MD5_CTX *ctx, void *data, unsigned long size) -{ - unsigned char *ptr; - MD5_u32plus a, b, c, d; - MD5_u32plus saved_a, saved_b, saved_c, saved_d; - - ptr = (unsigned char*) data; - - a = ctx->a; - b = ctx->b; - c = ctx->c; - d = ctx->d; - - do { - saved_a = a; - saved_b = b; - saved_c = c; - saved_d = d; - -/* Round 1 */ - STEP(F, a, b, c, d, SET(0), 0xd76aa478, 7) - STEP(F, d, a, b, c, SET(1), 0xe8c7b756, 12) - STEP(F, c, d, a, b, SET(2), 0x242070db, 17) - STEP(F, b, c, d, a, SET(3), 0xc1bdceee, 22) - STEP(F, a, b, c, d, SET(4), 0xf57c0faf, 7) - STEP(F, d, a, b, c, SET(5), 0x4787c62a, 12) - STEP(F, c, d, a, b, SET(6), 0xa8304613, 17) - STEP(F, b, c, d, a, SET(7), 0xfd469501, 22) - STEP(F, a, b, c, d, SET(8), 0x698098d8, 7) - STEP(F, d, a, b, c, SET(9), 0x8b44f7af, 12) - STEP(F, c, d, a, b, SET(10), 0xffff5bb1, 17) - STEP(F, b, c, d, a, SET(11), 0x895cd7be, 22) - STEP(F, a, b, c, d, SET(12), 0x6b901122, 7) - STEP(F, d, a, b, c, SET(13), 0xfd987193, 12) - STEP(F, c, d, a, b, SET(14), 0xa679438e, 17) - STEP(F, b, c, d, a, SET(15), 0x49b40821, 22) - -/* Round 2 */ - STEP(G, a, b, c, d, GET(1), 0xf61e2562, 5) - STEP(G, d, a, b, c, GET(6), 0xc040b340, 9) - STEP(G, c, d, a, b, GET(11), 0x265e5a51, 14) - STEP(G, b, c, d, a, GET(0), 0xe9b6c7aa, 20) - STEP(G, a, b, c, d, GET(5), 0xd62f105d, 5) - STEP(G, d, a, b, c, GET(10), 0x02441453, 9) - STEP(G, c, d, a, b, GET(15), 0xd8a1e681, 14) - STEP(G, b, c, d, a, GET(4), 0xe7d3fbc8, 20) - STEP(G, a, b, c, d, GET(9), 0x21e1cde6, 5) - STEP(G, d, a, b, c, GET(14), 0xc33707d6, 9) - STEP(G, c, d, a, b, GET(3), 0xf4d50d87, 14) - STEP(G, b, c, d, a, GET(8), 0x455a14ed, 20) - STEP(G, a, b, c, d, GET(13), 0xa9e3e905, 5) - STEP(G, d, a, b, c, GET(2), 0xfcefa3f8, 9) - STEP(G, c, d, a, b, GET(7), 0x676f02d9, 14) - STEP(G, b, c, d, a, GET(12), 0x8d2a4c8a, 20) - -/* Round 3 */ - STEP(H, a, b, c, d, GET(5), 0xfffa3942, 4) - STEP(H, d, a, b, c, GET(8), 0x8771f681, 11) - STEP(H, c, d, a, b, GET(11), 0x6d9d6122, 16) - STEP(H, b, c, d, a, GET(14), 0xfde5380c, 23) - STEP(H, a, b, c, d, GET(1), 0xa4beea44, 4) - STEP(H, d, a, b, c, GET(4), 0x4bdecfa9, 11) - STEP(H, c, d, a, b, GET(7), 0xf6bb4b60, 16) - STEP(H, b, c, d, a, GET(10), 0xbebfbc70, 23) - STEP(H, a, b, c, d, GET(13), 0x289b7ec6, 4) - STEP(H, d, a, b, c, GET(0), 0xeaa127fa, 11) - STEP(H, c, d, a, b, GET(3), 0xd4ef3085, 16) - STEP(H, b, c, d, a, GET(6), 0x04881d05, 23) - STEP(H, a, b, c, d, GET(9), 0xd9d4d039, 4) - STEP(H, d, a, b, c, GET(12), 0xe6db99e5, 11) - STEP(H, c, d, a, b, GET(15), 0x1fa27cf8, 16) - STEP(H, b, c, d, a, GET(2), 0xc4ac5665, 23) - -/* Round 4 */ - STEP(I, a, b, c, d, GET(0), 0xf4292244, 6) - STEP(I, d, a, b, c, GET(7), 0x432aff97, 10) - STEP(I, c, d, a, b, GET(14), 0xab9423a7, 15) - STEP(I, b, c, d, a, GET(5), 0xfc93a039, 21) - STEP(I, a, b, c, d, GET(12), 0x655b59c3, 6) - STEP(I, d, a, b, c, GET(3), 0x8f0ccc92, 10) - STEP(I, c, d, a, b, GET(10), 0xffeff47d, 15) - STEP(I, b, c, d, a, GET(1), 0x85845dd1, 21) - STEP(I, a, b, c, d, GET(8), 0x6fa87e4f, 6) - STEP(I, d, a, b, c, GET(15), 0xfe2ce6e0, 10) - STEP(I, c, d, a, b, GET(6), 0xa3014314, 15) - STEP(I, b, c, d, a, GET(13), 0x4e0811a1, 21) - STEP(I, a, b, c, d, GET(4), 0xf7537e82, 6) - STEP(I, d, a, b, c, GET(11), 0xbd3af235, 10) - STEP(I, c, d, a, b, GET(2), 0x2ad7d2bb, 15) - STEP(I, b, c, d, a, GET(9), 0xeb86d391, 21) - - a += saved_a; - b += saved_b; - c += saved_c; - d += saved_d; - - ptr += 64; - } while (size -= 64); - - ctx->a = a; - ctx->b = b; - ctx->c = c; - ctx->d = d; - - return ptr; -} - -void MD5_Init(MD5_CTX *ctx) -{ - ctx->a = 0x67452301; - ctx->b = 0xefcdab89; - ctx->c = 0x98badcfe; - ctx->d = 0x10325476; - - ctx->lo = 0; - ctx->hi = 0; -} - -void MD5_Update(MD5_CTX *ctx, void *data, unsigned long size) -{ - MD5_u32plus saved_lo; - unsigned long used, free; - - saved_lo = ctx->lo; - if ((ctx->lo = (saved_lo + size) & 0x1fffffff) < saved_lo) - ctx->hi++; - ctx->hi += size >> 29; - - used = saved_lo & 0x3f; - - if (used) { - free = 64 - used; - - if (size < free) { - memcpy(&ctx->buffer[used], data, size); - return; - } - - memcpy(&ctx->buffer[used], data, free); - data = (unsigned char *)data + free; - size -= free; - body(ctx, ctx->buffer, 64); - } - - if (size >= 64) { - data = body(ctx, data, size & ~(unsigned long)0x3f); - size &= 0x3f; - } - - memcpy(ctx->buffer, data, size); -} - -void MD5_Final(unsigned char *result, MD5_CTX *ctx) -{ - unsigned long used, free; - - used = ctx->lo & 0x3f; - - ctx->buffer[used++] = 0x80; - - free = 64 - used; - - if (free < 8) { - memset(&ctx->buffer[used], 0, free); - body(ctx, ctx->buffer, 64); - used = 0; - free = 64; - } - - memset(&ctx->buffer[used], 0, free - 8); - - ctx->lo <<= 3; - ctx->buffer[56] = ctx->lo; - ctx->buffer[57] = ctx->lo >> 8; - ctx->buffer[58] = ctx->lo >> 16; - ctx->buffer[59] = ctx->lo >> 24; - ctx->buffer[60] = ctx->hi; - ctx->buffer[61] = ctx->hi >> 8; - ctx->buffer[62] = ctx->hi >> 16; - ctx->buffer[63] = ctx->hi >> 24; - - body(ctx, ctx->buffer, 64); - - result[0] = ctx->a; - result[1] = ctx->a >> 8; - result[2] = ctx->a >> 16; - result[3] = ctx->a >> 24; - result[4] = ctx->b; - result[5] = ctx->b >> 8; - result[6] = ctx->b >> 16; - result[7] = ctx->b >> 24; - result[8] = ctx->c; - result[9] = ctx->c >> 8; - result[10] = ctx->c >> 16; - result[11] = ctx->c >> 24; - result[12] = ctx->d; - result[13] = ctx->d >> 8; - result[14] = ctx->d >> 16; - result[15] = ctx->d >> 24; - - memset(ctx, 0, sizeof(*ctx)); -} - -#endif diff --git a/source/vsearch_src/md5.h b/source/vsearch_src/md5.h deleted file mode 100755 index 6f32ff63..00000000 --- a/source/vsearch_src/md5.h +++ /dev/null @@ -1,53 +0,0 @@ -/* Slightly modified for vsearch by Torbjorn Rognes, 29 Sep 2015 */ - -/* - * This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. - * MD5 Message-Digest Algorithm (RFC 1321). - * - * Homepage: - * http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 - * - * Author: - * Alexander Peslyak, better known as Solar Designer - * - * This software was written by Alexander Peslyak in 2001. No copyright is - * claimed, and the software is hereby placed in the public domain. - * In case this attempt to disclaim copyright and place the software in the - * public domain is deemed null and void, then the software is - * Copyright (c) 2001 Alexander Peslyak and it is hereby released to the - * general public under the following terms: - * - * Redistribution and use in source and binary forms, with or without - * modification, are permitted. - * - * There's ABSOLUTELY NO WARRANTY, express or implied. - * - * See md5.c for more information. - */ - -#ifndef __MD5_H -#define __MD5_H - -#ifdef __cplusplus -extern "C" { -#endif - -/* Any 32-bit or wider unsigned integer data type will do */ -typedef unsigned int MD5_u32plus; - -typedef struct { - MD5_u32plus lo, hi; - MD5_u32plus a, b, c, d; - unsigned char buffer[64]; - MD5_u32plus block[16]; -} MD5_CTX; - -extern void MD5_Init(MD5_CTX *ctx); -extern void MD5_Update(MD5_CTX *ctx, void *data, unsigned long size); -extern void MD5_Final(unsigned char *result, MD5_CTX *ctx); - -#ifdef __cplusplus -} -#endif - -#endif /* __MD5_H */ diff --git a/source/vsearch_src/mergepairs.cc b/source/vsearch_src/mergepairs.cc deleted file mode 100755 index edba2de2..00000000 --- a/source/vsearch_src/mergepairs.cc +++ /dev/null @@ -1,812 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" -#include "pvalue.h" - -/* Use default PEAR scoring method and statistics */ -const int score_method = 2; -const double pvalue_level = 0.01; -const double alpha = 1.0; -const double beta = -1.0; - -/* - TODO: - - Parallelize with pthreads - - Check matching labels of forward and reverse reads (/1 and /2) -*/ - -/* static variables, needs lock */ - -static FILE * fp_fastqout = 0; -static FILE * fp_fastaout = 0; -static FILE * fp_fastqout_notmerged_fwd = 0; -static FILE * fp_fastqout_notmerged_rev = 0; -static FILE * fp_fastaout_notmerged_fwd = 0; -static FILE * fp_fastaout_notmerged_rev = 0; -static FILE * fp_eetabbedout = 0; - -static long merged = 0; -static long notmerged = 0; -static long total = 0; - -FILE * fileopenw(char * filename) -{ - FILE * fp = 0; - fp = fopen(filename, "w"); - if (!fp) - fatal("Unable to open file for writing (%s)", filename); - return fp; -} - -int get_qual(char q) -{ - int qual = q - opt_fastq_ascii; - char msg[200]; - - if (qual < opt_fastq_qmin) - { - snprintf(msg, 200, "FASTQ quality value (%d) below qmin (%ld)", - qual, opt_fastq_qmin); - fatal(msg); - } - else if (qual > opt_fastq_qmax) - { - snprintf(msg, 200, "FASTQ quality value (%d) above qmax (%ld)", - qual, opt_fastq_qmax); - fatal(msg); - } - return qual; -} - -static char merge_qual_same[128][128]; -static char merge_qual_diff[128][128]; -static double match_oes[128][128]; -static double match_score[128][128]; -static double mism_oes[128][128]; -static double mism_score[128][128]; -static double q2p[128]; -static double ambig_score; -static double ambig_oes; - -double q_to_p(double q) -{ - int x = q - opt_fastq_ascii; - if (x < 2) - return 0.75; - else - return exp10(-x/10.0); -} - -void precompute_qual() -{ - /* Precompute tables of scores etc */ - - ambig_oes = alpha * 0.25 + beta * 0.75; - - switch (score_method) - { - case 1: - ambig_score = alpha * 0.25 + beta * 0.75; - break; - case 2: - ambig_score = beta * 0.75; - break; - case 3: - ambig_score = beta; - break; - } - - for (int x = 33; x < 126; x++) - { - double px = q_to_p(x); - q2p[x] = px; - - for (int y = 33; y < 126; y++) - { - double py = q_to_p(y); - - double p, q, oes, score; - - /* Quality score equations from Edgar & Flyvbjerg (2015) */ - - /* Match */ - p = px * py / 3.0 / (1.0 - px - py + 4.0 * px * py / 3.0); - q = opt_fastq_ascii + MIN(round(-10.0*log10(p)), opt_fastq_qmaxout); - merge_qual_same[x][y] = q; - - /* Mismatch, x is highest quality */ - p = px * (1.0 - py / 3.0) / (px + py - 4.0 * px * py / 3.0); - q = opt_fastq_ascii + MIN(round(-10.0*log10(p)), opt_fastq_qmaxout); - merge_qual_diff[x][y] = q; - - /* Score weights from PEAR */ - - /* Match */ - - /* probability that they really are similar, - given that they look similar and have - error probabilites of px and py, resp. */ - - p = 1.0 - px - py + px * py * 4.0 / 3.0; - - oes = alpha * p + beta * (1.0 - p); - - switch (score_method) - { - case 1: - score = alpha * p + beta * (1.0 - p); - break; - case 2: - score = alpha * p; - break; - case 3: - score = alpha; - break; - } - - match_oes[x][y] = oes; - match_score[x][y] = score; - - /* Mismatch */ - - /* Probability that they really are different, - given that they look different and have - error probabilities of px and py, resp. */ - - p = 1.0 - px / 3.0 - py / 3.0 + px * py * 4.0 / 9.0; - - oes = (beta - alpha) * p + alpha; - - switch (score_method) - { - case 1: - score = alpha * (1.0 - p) + beta * p; - break; - case 2: - score = beta * p; - break; - case 3: - score = beta; - break; - } - - mism_oes[x][y] = oes; - mism_score[x][y] = score; - } - } -} - -void merge_sym(char * sym, char * qual, - char fwd_sym, char rev_sym, - char fwd_qual, char rev_qual) -{ - if (rev_sym == 'N') - { - * sym = fwd_sym; - * qual = fwd_qual; - } - else if (fwd_sym == 'N') - { - * sym = rev_sym; - * qual = rev_qual; - } - else if (fwd_sym == rev_sym) - { - /* agreement */ - * sym = fwd_sym; - * qual = merge_qual_same[(unsigned)fwd_qual][(unsigned)rev_qual]; - } - else - { - /* disagreement */ - if (fwd_qual > rev_qual) - { - * sym = fwd_sym; - * qual = merge_qual_diff[(unsigned)fwd_qual][(unsigned)rev_qual]; - } - else - { - * sym = rev_sym; - * qual = merge_qual_diff[(unsigned)rev_qual][(unsigned)fwd_qual]; - } - } -} - -static char * merged_sequence = 0; -static char * merged_quality = 0; -static char * merged_header = 0; - -static size_t merged_sequence_alloc = 0; -static size_t merged_header_alloc = 0; - -void keep(char * fwd_header, char * rev_header, - char * fwd_sequence, char * rev_sequence, - char * fwd_quality, char * rev_quality, - long fwd_trunc, long rev_trunc, - long offset) -{ - /* The offset is the distance between the (truncated) 3' ends of the two - sequences */ - - long rev_3prime_overhang = offset > fwd_trunc ? offset - fwd_trunc : 0; - long fwd_5prime_overhang = fwd_trunc > offset ? fwd_trunc - offset : 0; - long mergelen = fwd_trunc + rev_trunc - offset; - - if (opt_label_suffix) - { - size_t need = strlen(fwd_header) + strlen(opt_label_suffix) + 1; - if (need > merged_header_alloc) - { - merged_header_alloc = need; - merged_header = (char*)xrealloc(merged_header, merged_header_alloc); - } - } - - if ((size_t)(mergelen + 1) > merged_sequence_alloc) - { - merged_sequence_alloc = mergelen + 1; - merged_sequence = (char*)xrealloc(merged_sequence,merged_sequence_alloc); - merged_quality = (char*)xrealloc(merged_quality,merged_sequence_alloc); - } - - char * merged_sequence = (char *) xmalloc(mergelen + 1); - char * merged_quality = (char *) xmalloc(mergelen + 1); - - double ee = 0.0; - - long fwd_pos = 0; - long rev_pos = rev_trunc - 1 + fwd_5prime_overhang - rev_3prime_overhang; - - long fwd_errors = 0; - long rev_errors = 0; - - for(long i = 0; i < mergelen; i++) - { - bool has_fwd = 0; - if ((fwd_pos >= 0) && (fwd_pos < fwd_trunc)) - has_fwd = 1; - - bool has_rev = 0; - if ((rev_pos >= 0) && (rev_pos < rev_trunc)) - has_rev = 1; - - char sym; - char qual; - - if (has_fwd && has_rev) - { - char fwd_sym = fwd_sequence[fwd_pos]; - char rev_sym = chrmap_complement[(int)(rev_sequence[rev_pos])]; - char fwd_qual = fwd_quality[fwd_pos]; - char rev_qual = rev_quality[rev_pos]; - - merge_sym(& sym, - & qual, - fwd_qual < 2 ? 'N' : fwd_sym, - rev_qual < 2 ? 'N' : rev_sym, - fwd_qual, - rev_qual); - - if (sym != fwd_sym) - fwd_errors++; - if (sym != rev_sym) - rev_errors++; - } - else if (has_fwd) - { - sym = fwd_sequence[fwd_pos]; - qual = fwd_quality[fwd_pos]; - } - else - { - sym = chrmap_complement[(int)(rev_sequence[rev_pos])]; - qual = rev_quality[rev_pos]; - } - - merged_sequence[i] = sym; - merged_quality[i] = qual; - - ee += q2p[(unsigned)qual]; - - fwd_pos++; - rev_pos--; - } - - merged_sequence[mergelen] = 0; - merged_quality[mergelen] = 0; - - if (ee <= opt_fastq_maxee) - { - merged++; - - if (opt_label_suffix) - (void) sprintf(merged_header, "%s%s", fwd_header, opt_label_suffix); - - if (opt_fastqout) - { - if (opt_fastq_eeout) - fastq_print_with_ee(fp_fastqout, - opt_label_suffix ? merged_header : fwd_header, - merged_sequence, - merged_quality, - ee); - else - fastq_print(fp_fastqout, - opt_label_suffix ? merged_header : fwd_header, - merged_sequence, - merged_quality); - } - - if (opt_fastaout) - fasta_print(fp_fastaout, - opt_label_suffix ? merged_header : fwd_header, - merged_sequence, - mergelen); - - if (opt_eetabbedout) - { - double ee_fwd = 0.0; - for(int i=0; i rev_trunc ? i - rev_trunc : 0; - long rev_3prime_overhang = i > fwd_trunc ? i - fwd_trunc : 0; - long overlap = i - fwd_3prime_overhang - rev_3prime_overhang; - long diffs = 0; - long fwd_pos_start = fwd_trunc - fwd_3prime_overhang - 1; - long rev_pos_start = rev_trunc - rev_3prime_overhang - overlap; - - double score = overlap_score(fwd_sequence, rev_sequence, - fwd_quality, rev_quality, - fwd_pos_start, rev_pos_start, - overlap, - & diffs); - - if ((diffs <= opt_fastq_maxdiffs) && (score > best_score)) - { - best_score = score; - best_i = i; - } - } - - /* compute oes for best alignment */ - - if (best_score > 0.0) - { - long i = best_i; - long fwd_3prime_overhang = i > rev_trunc ? i - rev_trunc : 0; - long rev_3prime_overhang = i > fwd_trunc ? i - fwd_trunc : 0; - long overlap = i - fwd_3prime_overhang - rev_3prime_overhang; - long fwd_pos_start = fwd_trunc - fwd_3prime_overhang - 1; - long rev_pos_start = rev_trunc - rev_3prime_overhang - overlap; - - best_oes = overlap_oes(fwd_sequence, rev_sequence, - fwd_quality, rev_quality, - fwd_pos_start, rev_pos_start, - overlap); - } - - /* Statistical test as in PEAR */ - - const int basefreqpct = (int) (0.25 * 100.0); - - int overlapregion = opt_fastq_minovlen; - if (overlapregion > 99) - overlapregion = 99; - if (overlapregion < 1) - overlapregion = 1; - - double cutoff; - - if (pvalue_level == 1.0) - { - cutoff = DBL_MIN; - } - else if (pvalue_level == 0.01) - { - cutoff = precomp2_01[overlapregion][basefreqpct]; - } - else if (pvalue_level == 0.05) - { - cutoff = precomp2_05[overlapregion][basefreqpct]; - } - else if (pvalue_level == 0.001) - { - cutoff = precomp2_001[overlapregion][basefreqpct]; - } - else - { - cutoff = precomp2_0001[overlapregion][basefreqpct]; - } - - if (best_oes <= cutoff) - best_i = 0; - - return best_i; -} - -void fastq_mergepairs() -{ - /* open input files */ - - fastq_handle fastq_fwd = fastq_open(opt_fastq_mergepairs); - fastq_handle fastq_rev = fastq_open(opt_reverse); - - /* open output files */ - - if (opt_fastqout) - fp_fastqout = fileopenw(opt_fastqout); - if (opt_fastaout) - fp_fastaout = fileopenw(opt_fastaout); - if (opt_fastqout_notmerged_fwd) - fp_fastqout_notmerged_fwd = fileopenw(opt_fastqout_notmerged_fwd); - if (opt_fastqout_notmerged_rev) - fp_fastqout_notmerged_rev = fileopenw(opt_fastqout_notmerged_rev); - if (opt_fastaout_notmerged_fwd) - fp_fastaout_notmerged_fwd = fileopenw(opt_fastaout_notmerged_fwd); - if (opt_fastaout_notmerged_rev) - fp_fastaout_notmerged_rev = fileopenw(opt_fastaout_notmerged_rev); - if (opt_eetabbedout) - fp_eetabbedout = fileopenw(opt_eetabbedout); - - /* precompute merged quality values */ - - precompute_qual(); - - /* init progress */ - - unsigned long filesize = fastq_get_size(fastq_fwd); - progress_init("Merging reads", filesize); - - /* start loop */ - - while(fastq_next(fastq_fwd, 1, chrmap_upcase)) - { - if (! fastq_next(fastq_rev, 1, chrmap_upcase)) - fatal("More forward reads than reverse reads"); - - /* TODO: Check that labels match: label/1 and label/2 */ - - total++; - - long fwd_length = fastq_get_sequence_length(fastq_fwd); - long rev_length = fastq_get_sequence_length(fastq_rev); - - char * fwd_header = fastq_get_header(fastq_fwd); - char * rev_header = fastq_get_header(fastq_rev); - - char * fwd_sequence = fastq_get_sequence(fastq_fwd); - char * rev_sequence = fastq_get_sequence(fastq_rev); - - char * fwd_quality = fastq_get_quality(fastq_fwd); - char * rev_quality = fastq_get_quality(fastq_rev); - - long fwd_trunc = fwd_length; - long rev_trunc = rev_length; - - bool skip = 0; - - /* check length */ - - if ((fwd_length < opt_fastq_minlen) || - (rev_length < opt_fastq_minlen)) - skip = 1; - - /* truncate sequences by quality */ - - if (!skip) - { - for (long i = 0; i < fwd_length; i++) - if (get_qual(fwd_quality[i]) <= opt_fastq_truncqual) - { - fwd_trunc = i; - break; - } - if (fwd_trunc < opt_fastq_minlen) - skip = 1; - } - - if (!skip) - { - for (long i = 0; i < rev_length; i++) - if (get_qual(rev_quality[i]) <= opt_fastq_truncqual) - { - rev_trunc = i; - break; - } - if (rev_trunc < opt_fastq_minlen) - skip = 1; - } - - /* count n's */ - - /* replace quality of N's by zero */ - - if (!skip) - { - long fwd_ncount = 0; - for (long i = 0; i < fwd_trunc; i++) - if (fwd_sequence[i] == 'N') - { - fwd_quality[i] = opt_fastq_ascii; - fwd_ncount++; - } - if (fwd_ncount > opt_fastq_maxns) - skip = 1; - } - - if (!skip) - { - long rev_ncount = 0; - for (long i = 0; i < rev_trunc; i++) - if (rev_sequence[i] == 'N') - { - rev_quality[i] = opt_fastq_ascii; - rev_ncount++; - } - if (rev_ncount > opt_fastq_maxns) - skip = 1; - } - - long offset = 0; - - if (!skip) - { - offset = merge(fwd_sequence, rev_sequence, - fwd_quality, rev_quality, - fwd_trunc, rev_trunc); - } - - if (offset) - { - keep(fwd_header, rev_header, - fwd_sequence, rev_sequence, - fwd_quality, rev_quality, - fwd_trunc, rev_trunc, - offset); - } - else - discard(fwd_header, rev_header, - fwd_sequence, rev_sequence, - fwd_quality, rev_quality, - fwd_length, rev_length); - - progress_update(fastq_get_position(fastq_fwd)); - } - - progress_done(); - - if (fastq_next(fastq_rev, 1, chrmap_upcase)) - fatal("More reverse reads than forward reads"); - - fprintf(stderr, - "%lu read pairs total\n", - total); - - fprintf(stderr, - "%lu pairs merged (%.1lf%%) and %lu pairs not merged (%.1lf%%).\n", - merged, - 100.0 * merged / total, - notmerged, - 100.0 * notmerged / total); - - if (opt_eetabbedout) - fclose(fp_eetabbedout); - if (opt_fastaout_notmerged_rev) - fclose(fp_fastaout_notmerged_rev); - if (opt_fastaout_notmerged_fwd) - fclose(fp_fastaout_notmerged_fwd); - if (opt_fastqout_notmerged_rev) - fclose(fp_fastqout_notmerged_rev); - if (opt_fastqout_notmerged_fwd) - fclose(fp_fastqout_notmerged_fwd); - if (opt_fastaout) - fclose(fp_fastaout); - if (opt_fastqout) - fclose(fp_fastqout); - - fastq_close(fastq_rev); - fastq_rev = 0; - fastq_close(fastq_fwd); - fastq_fwd = 0; - - if (merged_sequence) - free(merged_sequence); - if (merged_quality) - free(merged_quality); - if (merged_header) - free(merged_header); -} diff --git a/source/vsearch_src/mergepairs.h b/source/vsearch_src/mergepairs.h deleted file mode 100755 index ee0cf3a0..00000000 --- a/source/vsearch_src/mergepairs.h +++ /dev/null @@ -1,61 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void fastq_mergepairs(); diff --git a/source/vsearch_src/minheap.cc b/source/vsearch_src/minheap.cc deleted file mode 100755 index 7885c3e9..00000000 --- a/source/vsearch_src/minheap.cc +++ /dev/null @@ -1,267 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* implement a priority queue with a min heap binary array structure */ -/* elements with the lowest count should be at the top (root) */ - -int -elem_smaller(elem_t * a, elem_t * b) -{ - /* return 1 if a is smaller than b, 0 if equal or greater */ - if (a->count < b->count) - return 1; - else if (a->count > b->count) - return 0; - else if (a->length > b->length) - return 1; - else if (a->length < b->length) - return 0; - else if (a->seqno > b->seqno) - return 1; - else - return 0; -} - -int minheap_compare(const void * a, const void * b) -{ - elem_t * x = (elem_t*) a; - elem_t * y = (elem_t*) b; - - if (elem_smaller(x, y)) - return -1; - else - return +1; -} - -minheap_t * -minheap_init(int size) -{ - minheap_t * m = (minheap_t *) xmalloc(sizeof(minheap_t)); - m->alloc = size; - m->array = (elem_t *) xmalloc(size * sizeof(elem_t)); - m->count = 0; - return m; -} - -void -minheap_exit(minheap_t * m) -{ - free(m->array); - free(m); -} - -static int swaps = 0; - -void -minheap_replaceroot(minheap_t * m, elem_t tmp) -{ - /* remove the element at the root, then swap children up - to the root and insert tmp at suitable place */ - - /* start with root */ - int p = 0; - int c = 2*p+1; - - /* while at least one child */ - while (c < m->count) - { - /* if two children: swap with the one with smallest value */ - if ((c + 1 < m->count) && (elem_smaller(m->array + c + 1, m->array + c))) - c++; - - /* swap parent and child if child has lower value */ - if (elem_smaller(m->array + c, &tmp)) - { - m->array[p] = m->array[c]; - swaps++; - } - else - break; - - /* step down */ - p = c; - c = 2*p+1; - } - - m->array[p] = tmp; -} - - -void -minheap_add(minheap_t * m, elem_t * n) -{ - if (m->count < m->alloc) - { - /* space for another item at end; swap upwards */ - - int i = m->count++; - int p = (i-1)/2; - while ((i>0) && elem_smaller(n, m->array+p)) - { - m->array[i] = m->array[p]; - i = p; - p = (i-1)/2; - swaps++; - } - m->array[i] = *n; - } - else if (elem_smaller(m->array, n)) - { - /* replace the root if new element is larger than root */ - minheap_replaceroot(m, *n); - } -} - -#if 0 -inline int -minheap_isempty(minheap_t * m) -{ - return !m->count; -} - -inline void -minheap_empty(minheap_t * m) -{ - m->count = 0; -} -#endif - -elem_t -minheap_pop(minheap_t * m) -{ - /* return top element and restore order */ - static elem_t zero = {0,0,0}; - - if (m->count) - { - elem_t top = m->array[0]; - m->count--; - if (m->count) - { - elem_t tmp = m->array[m->count]; - minheap_replaceroot(m, tmp); - } - return top; - } - else - return zero; -} - -void -minheap_sort(minheap_t * m) -{ - qsort(m->array, m->count, sizeof(elem_t), minheap_compare); -} - -void -minheap_dump(minheap_t * m) -{ - for(int i=0; i < m->count; i++) - printf("%s%u", i>0 ? " " : "", m->array[i].count); - printf("\n"); -} - -elem_t -minheap_poplast(minheap_t * m) -{ - /* return top element and restore order */ - static elem_t zero = {0,0,0}; - - if (m->count) - return m->array[--m->count]; - else - return zero; -} - - -void -minheap_test() -{ - minheap_t * m = minheap_init(10000000); - - int samples = 10000000; - swaps = 0; - - for(int i=samples; i>=0; i--) - { - elem_t x; x.seqno = 0; x.length = 1; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - x.count = (unsigned int) (random()); -#else - x.count = (unsigned int) (rand()); -#endif - //= {(unsigned int)(random()),0,1}; - minheap_add(m, & x); - } - - minheap_sort(m); - - while(! minheap_isempty(m)) - { - elem_t x = minheap_poplast(m); - printf("%u\n", x.count); - } - - printf("Swaps: %d\n\n", swaps); - - minheap_exit(m); -} diff --git a/source/vsearch_src/minheap.h b/source/vsearch_src/minheap.h deleted file mode 100755 index cd4debfd..00000000 --- a/source/vsearch_src/minheap.h +++ /dev/null @@ -1,92 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -typedef struct topscore -{ - unsigned int count; - unsigned int seqno; - unsigned int length; -} elem_t; - - -typedef struct minheap_s -{ - int alloc; - int count; - elem_t * array; -} minheap_t; - -inline int minheap_isempty(minheap_t * m) -{ - return !m->count; -} - -inline void minheap_empty(minheap_t * m) -{ - m->count = 0; -} - -elem_t minheap_poplast(minheap_t * m); -void minheap_sort(minheap_t * m); -minheap_t * minheap_init(int size); -void minheap_exit(minheap_t * m); -void minheap_add(minheap_t * m, elem_t * n); -elem_t minheap_pop(minheap_t * m); - diff --git a/source/vsearch_src/msa.cc b/source/vsearch_src/msa.cc deleted file mode 100755 index 71aad624..00000000 --- a/source/vsearch_src/msa.cc +++ /dev/null @@ -1,433 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* Compute consensus sequence and msa of clustered sequences */ - -static char * aln; -static int alnpos; -static int * profile; - -void msa_add(char c) -{ - int * p = profile + 4 * alnpos; - - switch(toupper(c)) - { - case 'A': - p[0] += 12; - break; - case 'C': - p[1] += 12; - break; - case 'G': - p[2] += 12; - break; - case 'T': - case 'U': - p[3] += 12; - break; - case 'R': - p[0] += 6; - p[2] += 6; - break; - case 'Y': - p[1] += 6; - p[3] += 6; - break; - case 'S': - p[1] += 6; - p[2] += 6; - break; - case 'W': - p[0] += 6; - p[3] += 6; - break; - case 'K': - p[2] += 6; - p[3] += 6; - break; - case 'M': - p[0] += 6; - p[1] += 6; - break; - case 'B': - p[1] += 4; - p[2] += 4; - p[3] += 4; - break; - case 'D': - p[0] += 4; - p[2] += 4; - p[3] += 4; - break; - case 'H': - p[0] += 4; - p[1] += 4; - p[3] += 4; - break; - case 'V': - p[0] += 4; - p[1] += 4; - p[2] += 4; - break; - case 'N': - p[0] += 3; - p[1] += 3; - p[2] += 3; - p[3] += 3; - break; - } - - aln[alnpos++] = c; -} - -void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, - int cluster, - int target_count, struct msa_target_s * target_list, - long totalabundance) -{ - int centroid_seqno = target_list[0].seqno; - int centroid_len = db_getsequencelen(centroid_seqno); - - /* find max insertions in front of each position in the centroid sequence */ - int * maxi = (int *) xmalloc((centroid_len + 1) * sizeof(int)); - memset(maxi, 0, (centroid_len + 1) * sizeof(int)); - - for(int j=1; j maxi[pos]) - maxi[pos] = run; - break; - } - } - } - - /* find total alignment length */ - int alnlen = 0; - for(int i=0; i < centroid_len+1; i++) - alnlen += maxi[i]; - alnlen += centroid_len; - - /* allocate memory for profile (for consensus) and aligned seq */ - profile = (int *) xmalloc(4 * sizeof(int) * alnlen); - memset(profile, 0, 4 * sizeof(int) * alnlen); - aln = (char *) xmalloc(alnlen+1); - char * cons = (char *) xmalloc(alnlen+1); - - /* Find longest target sequence on reverse strand and allocate buffer */ - long longest_reversed = 0; - for(int i=0; i < target_count; i++) - if (target_list[i].strand) - { - long len = db_getsequencelen(target_list[i].seqno); - if (len > longest_reversed) - longest_reversed = len; - } - char * rc_buffer = 0; - if (longest_reversed > 0) - rc_buffer = (char*) xmalloc(longest_reversed + 1); - - /* blank line before each msa */ - if (fp_msaout) - fprintf(fp_msaout, "\n"); - - for(int j=0; j%s%s\n", j ? "" : "*", - db_getheader(target_seqno)); - fasta_print_sequence(fp_msaout, aln, alnlen, opt_fasta_width); - } - } - - if (rc_buffer) - free(rc_buffer); - - /* consensus */ - - int conslen = 0; - - /* Censor part of the consensus sequence outside the centroid sequence */ - - int left_censored = maxi[0]; - int right_censored = maxi[centroid_len]; - - for(int i=0; i= alnlen - right_censored)) - { - aln[i] = '+'; - } - else - { - /* find most common symbol */ - char best_sym = 0; - int best_count = -1; - int nongap_count = 0; - for(int c=0; c<4; c++) - { - int count = profile[4*i+c]; - if (count > best_count) - { - best_count = count; - best_sym = c; - } - nongap_count += count; - } - - int gap_count = 12 * target_count - nongap_count; - - if (best_count >= gap_count) - { - char sym = sym_nt_2bit[(int)best_sym]; - aln[i] = sym; - cons[conslen++] = sym; - } - else - aln[i] = '-'; - } - } - - aln[alnlen] = 0; - cons[conslen] = 0; - - if (fp_msaout) - fasta_print(fp_msaout, "consensus", aln, alnlen); - - if (fp_consout) - { - if (opt_sizeout) - { - /* must remove old size info first */ - char * header_wo_size - = abundance_strip_size(global_abundance, - db_getheader(centroid_seqno), - db_getheaderlen(centroid_seqno)); - fprintf(fp_consout, - ">centroid=%s;seqs=%d;size=%ld;", - header_wo_size, - target_count, - totalabundance); - free(header_wo_size); - } - else - fprintf(fp_consout, - ">centroid=%s;seqs=%d;", - db_getheader(centroid_seqno), - target_count); - - if (opt_clusterout_id) - fprintf(fp_consout, "clusterid=%d;", cluster); - - fprintf(fp_consout, "\n"); - - fasta_print_sequence(fp_consout, cons, conslen, opt_fasta_width); - } - - if (fp_profile) - { - /* must remove old size info first */ - if (opt_sizeout) - { - char * header_wo_size - = abundance_strip_size(global_abundance, - db_getheader(centroid_seqno), - db_getheaderlen(centroid_seqno)); - fprintf(fp_profile, - ">centroid=%s;seqs=%d;size=%ld;", - header_wo_size, - target_count, - totalabundance); - free(header_wo_size); - } - else - fprintf(fp_profile, - ">centroid=%s;seqs=%d;", - db_getheader(centroid_seqno), - target_count); - - if (opt_clusterout_id) - fprintf(fp_profile, "clusterid=%d;", cluster); - - fprintf(fp_profile, "\n"); - - for (int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -struct msa_target_s -{ - int seqno; - char * cigar; - int strand; -}; - -void msa(FILE * fp_msaout, FILE * fp_consout, FILE * fp_profile, - int cluster, - int target_count, struct msa_target_s * target_list, - long totalabundance); diff --git a/source/vsearch_src/pvalue.h b/source/vsearch_src/pvalue.h deleted file mode 100755 index d9d59e51..00000000 --- a/source/vsearch_src/pvalue.h +++ /dev/null @@ -1,4843 +0,0 @@ -/* - Precomputed statistics for significance testing of merged sequence pairs - - These values were obtained from PEAR: - - https://github.com/xflouris/PEAR - - http://www.exelixis-lab.org/web/software/pear - - Copyright Jiajie Zhang, Kassian Kobert, Tomas Flouri & Alexandros Stamatakis - - Zhang J, Kobert K, Flouri T & Stamatakis A (2014) - PEAR: a fast and accurate Illumina Paired-End reAd mergeR - Bioinformatics, 30(5):614-20. - doi: 10.1093/bioinformatics/btt593 - - Included in vsearch with permission. -*/ - -/* - Value range from 0 to 99, precomp_05 is the table for p-value < 0.5, - precomp_05[i][j] is the proportion of match of the best - overlap, given i minimal allowed overlap, and random match q = - j/100, that will reach a p-value at least 0.05. Which means if the - user specify p = 0.05, then we observed a f, given min_0 = i and q = - j/100 if f >= precomp_05[i][j], this assembly will be kept. -*/ - -double precomp2_05[100][100] = - { - { - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0 - }, - { - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, 99.0, - 99.0, 99.0, 99.0, 99.0, 99.0, 4.0, 4.0, 4.0, 5.0, 5.0, - 6.0, 6.0, 7.0, 7.0, 8.0, 9.0, 10.0, 11.0, 12.0, 13.0, - 15.0, 17.0, 19.0, 22.0, 25.0, 28.0, 31.0, 34.0, 37.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0 - }, - { - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 4.0, 4.0, 4.0, 5.0, 5.0, - 6.0, 6.0, 7.0, 7.0, 8.0, 9.0, 10.0, 11.0, 12.0, 13.0, - 15.0, 17.0, 19.0, 22.0, 25.0, 28.0, 31.0, 34.0, 37.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, - 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0, 40.0 - 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{ - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, -9.0, -7.0, -4.0, -2.0, 1.0, - 3.0, 6.0, 8.0, 11.0, 13.0, 16.0, 18.0, 21.0, 24.0, 26.0, - 29.0, 32.0, 36.0, 39.0, 42.0, 46.0, 49.0, 53.0, 56.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0 - }, - { - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, -9.0, -7.0, -4.0, -2.0, 1.0, - 3.0, 6.0, 8.0, 10.0, 13.0, 15.0, 18.0, 21.0, 23.0, 26.0, - 29.0, 32.0, 36.0, 39.0, 42.0, 46.0, 49.0, 53.0, 56.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0 - }, - { - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, -10.0, -7.0, -5.0, -2.0, 0.0, - 3.0, 5.0, 8.0, 10.0, 13.0, 15.0, 18.0, 21.0, 23.0, 26.0, - 29.0, 32.0, 36.0, 39.0, 42.0, 46.0, 49.0, 53.0, 56.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, - 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0, 60.0 - } - }; diff --git a/source/vsearch_src/results.cc b/source/vsearch_src/results.cc deleted file mode 100755 index 4a0a6309..00000000 --- a/source/vsearch_src/results.cc +++ /dev/null @@ -1,742 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -void results_show_fastapairs_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc) -{ - /* http://www.drive5.com/usearch/manual/fastapairs.html */ - - if (hp) - { - char * qrow = align_getrow(hp->strand ? rc : qsequence, - hp->nwalignment, - hp->nwalignmentlength, - 0); - fasta_print_header(fp, query_head); - fasta_print_sequence(fp, - qrow + hp->trim_q_left + hp->trim_t_left, - hp->internal_alignmentlength, 0); - free(qrow); - - char * trow = align_getrow(db_getsequence(hp->target), - hp->nwalignment, - hp->nwalignmentlength, - 1); - fasta_print_header(fp, db_getheader(hp->target)); - fasta_print_sequence(fp, - trow + hp->trim_q_left + hp->trim_t_left, - hp->internal_alignmentlength, 0); - free(trow); - - fprintf(fp, "\n"); - } -} - - -void results_show_blast6out_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc) -{ - - /* - http://www.drive5.com/usearch/manual/blast6out.html - - query label - target label - percent identity - alignment length - number of mismatches - number of gap opens - 1-based position of start in query - 1-based position of end in query - 1-based position of start in target - 1-based position of end in target - E-value - bit score - - Note that USEARCH shows 13 fields when there is no hit, - but only 12 when there is a hit. Fixed in VSEARCH. - */ - - if (hp) - { - int qstart, qend; - - if (hp->strand) - { - /* minus strand */ - qstart = qseqlen; - qend = 1; - } - else - { - /* plus strand */ - qstart = 1; - qend = qseqlen; - } - - fprintf(fp, - "%s\t%s\t%.1f\t%d\t%d\t%d\t%d\t%d\t%d\t%lu\t%d\t%d\n", - query_head, - db_getheader(hp->target), - hp->id, - hp->internal_alignmentlength, - hp->mismatches, - hp->internal_gaps, - qstart, - qend, - 1, - db_getsequencelen(hp->target), - -1, - 0); - } - else - { - fprintf(fp, "%s\t*\t0.0\t0\t0\t0\t0\t0\t0\t0\t-1\t0\n", query_head); - } -} - -void results_show_uc_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc) -{ - /* - http://www.drive5.com/usearch/manual/ucout.html - - Columns: - H/N - cluster no (0-based) (target sequence no) - sequence length (query) - percent identity - strand: + or - - 0 - 0 - compressed alignment, e.g. 9I92M14D - query label - target label - */ - - if (hp) - { - bool perfect = (hp->matches == qseqlen) && - (qseqlen = db_getsequencelen(hp->target)); - - fprintf(fp, - "H\t%d\t%ld\t%.1f\t%c\t0\t0\t%s\t%s\t%s\n", - hp->target, - qseqlen, - hp->id, - hp->strand ? '-' : '+', - perfect ? "=" : hp->nwalignment, - query_head, - db_getheader(hp->target)); - } - else - fprintf(fp, "N\t*\t*\t*\t.\t*\t*\t*\t%s\t*\n", query_head); -} - -void results_show_userout_one(FILE * fp, struct hit * hp, - char * query_head, - char * qsequence, long qseqlen, - char * rc) -{ - - /* - http://drive5.com/usearch/manual/userout.html - qlo, qhi, tlo, thi and raw are given more meaningful values here - */ - - for (int c = 0; c < userfields_requested_count; c++) - { - if (c) - fprintf(fp, "\t"); - - int field = userfields_requested[c]; - - char * tsequence = 0; - long tseqlen = 0; - char * t_head = 0; - - if (hp) - { - tsequence = db_getsequence(hp->target); - tseqlen = db_getsequencelen(hp->target); - t_head = db_getheader(hp->target); - } - - char * qrow; - char * trow; - - switch (field) - { - case 0: /* query */ - fprintf(fp, "%s", query_head); - break; - case 1: /* target */ - fprintf(fp, "%s", hp ? t_head : "*"); - break; - case 2: /* evalue */ - fprintf(fp, "-1"); - break; - case 3: /* id */ - fprintf(fp, "%.1f", hp ? hp->id : 0.0); - break; - case 4: /* pctpv */ - fprintf(fp, "%.1f", (hp && (hp->internal_alignmentlength > 0)) ? 100.0 * hp->matches / hp->internal_alignmentlength : 0.0); - break; - case 5: /* pctgaps */ - fprintf(fp, "%.1f", (hp && (hp->internal_alignmentlength > 0)) ? 100.0 * hp->internal_indels / hp->internal_alignmentlength : 0.0); - break; - case 6: /* pairs */ - fprintf(fp, "%d", hp ? hp->matches + hp->mismatches : 0); - break; - case 7: /* gaps */ - fprintf(fp, "%d", hp ? hp->internal_indels : 0); - break; - case 8: /* qlo */ - fprintf(fp, "%ld", hp ? (hp->strand ? qseqlen : 1) : 0); - break; - case 9: /* qhi */ - fprintf(fp, "%ld", hp ? (hp->strand ? 1 : qseqlen) : 0); - break; - case 10: /* tlo */ - fprintf(fp, "%d", hp ? 1 : 0); - break; - case 11: /* thi */ - fprintf(fp, "%ld", tseqlen); - break; - case 12: /* pv */ - fprintf(fp, "%d", hp ? hp->matches : 0); - break; - case 13: /* ql */ - fprintf(fp, "%ld", qseqlen); - break; - case 14: /* tl */ - fprintf(fp, "%ld", hp ? tseqlen : 0); - break; - case 15: /* qs */ - fprintf(fp, "%ld", qseqlen); - break; - case 16: /* ts */ - fprintf(fp, "%ld", hp ? tseqlen : 0); - break; - case 17: /* alnlen */ - fprintf(fp, "%d", hp ? hp->internal_alignmentlength : 0); - break; - case 18: /* opens */ - fprintf(fp, "%d", hp ? hp->internal_gaps : 0); - break; - case 19: /* exts */ - fprintf(fp, "%d", hp ? hp->internal_indels - hp->internal_gaps : 0); - break; - case 20: /* raw */ - fprintf(fp, "%d", hp ? hp->nwscore : 0); - break; - case 21: /* bits */ - fprintf(fp, "%d", 0); - break; - case 22: /* aln */ - if (hp) - align_fprint_uncompressed_alignment(fp, hp->nwalignment); - break; - case 23: /* caln */ - if (hp) - fprintf(fp, "%s", hp->nwalignment); - break; - case 24: /* qstrand */ - if (hp) - fprintf(fp, "%c", hp->strand ? '-' : '+'); - break; - case 25: /* tstrand */ - if (hp) - fprintf(fp, "%c", '+'); - break; - case 26: /* qrow */ - if (hp) - { - qrow = align_getrow(hp->strand ? rc : qsequence, - hp->nwalignment, - hp->nwalignmentlength, - 0); - fprintf(fp, "%.*s", - (int)(hp->internal_alignmentlength), - qrow + hp->trim_q_left + hp->trim_t_left); - free(qrow); - } - break; - case 27: /* trow */ - if (hp) - { - trow = align_getrow(tsequence, - hp->nwalignment, - hp->nwalignmentlength, - 1); - fprintf(fp, "%.*s", - (int)(hp->internal_alignmentlength), - trow + hp->trim_q_left + hp->trim_t_left); - free(trow); - } - break; - case 28: /* qframe */ - fprintf(fp, "+0"); - break; - case 29: /* tframe */ - fprintf(fp, "+0"); - break; - case 30: /* mism */ - fprintf(fp, "%d", hp ? hp->mismatches : 0); - break; - case 31: /* ids */ - fprintf(fp, "%d", hp ? hp->matches : 0); - break; - case 32: /* qcov */ - fprintf(fp, "%.1f", - hp ? 100.0 * (hp->matches + hp->mismatches) / qseqlen : 0.0); - break; - case 33: /* tcov */ - fprintf(fp, "%.1f", - hp ? 100.0 * (hp->matches + hp->mismatches) / tseqlen : 0.0); - break; - case 34: /* id0 */ - fprintf(fp, "%.1f", hp ? hp->id0 : 0.0); - break; - case 35: /* id1 */ - fprintf(fp, "%.1f", hp ? hp->id1 : 0.0); - break; - case 36: /* id2 */ - fprintf(fp, "%.1f", hp ? hp->id2 : 0.0); - break; - case 37: /* id3 */ - fprintf(fp, "%.1f", hp ? hp->id3 : 0.0); - break; - case 38: /* id4 */ - fprintf(fp, "%.1f", hp ? hp->id4 : 0.0); - break; - - /* new internal alignment coordinates */ - - case 39: /* qilo */ - fprintf(fp, "%d", hp ? hp->trim_q_left + 1 : 0); - break; - case 40: /* qihi */ - fprintf(fp, "%ld", hp ? qseqlen - hp->trim_q_right : 0); - break; - case 41: /* tilo */ - fprintf(fp, "%d", hp ? hp->trim_t_left + 1 : 0); - break; - case 42: /* tihi */ - fprintf(fp, "%ld", hp ? tseqlen - hp->trim_t_right : 0); - break; - } - } - fprintf(fp, "\n"); -} - -void results_show_alnout(FILE * fp, - struct hit * hits, - int hitcount, - char * query_head, - char * qsequence, - long qseqlen, - char * rc) -{ - /* http://drive5.com/usearch/manual/alnout.html */ - - if (hitcount) - { - fprintf(fp, "\n"); - - fprintf(fp,"Query >%s\n", query_head); - fprintf(fp," %%Id TLen Target\n"); - - double top_hit_id = hits[0].id; - - for(int t = 0; t < hitcount; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - fprintf(fp,"%3.0f%% %6lu %s\n", - hp->id, - db_getsequencelen(hp->target), - db_getheader(hp->target)); - } - - for(int t = 0; t < hitcount; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - fprintf(fp,"\n"); - - - char * dseq = db_getsequence(hp->target); - long dseqlen = db_getsequencelen(hp->target); - - char dummy; - int qlenlen = snprintf(&dummy, 1, "%ld", qseqlen); - int tlenlen = snprintf(&dummy, 1, "%ld", dseqlen); - int numwidth = MAX(qlenlen, tlenlen); - - fprintf(fp," Query %*ldnt >%s\n", numwidth, - qseqlen, query_head); - fprintf(fp,"Target %*ldnt >%s\n", numwidth, - dseqlen, db_getheader(hp->target)); - - int rowlen = opt_rowlen == 0 ? qseqlen+dseqlen : opt_rowlen; - - align_show(fp, - qsequence, - qseqlen, - hp->trim_q_left, - "Qry", - dseq, - dseqlen, - hp->trim_t_left, - "Tgt", - hp->nwalignment + hp->trim_aln_left, - strlen(hp->nwalignment) - - hp->trim_aln_left - hp->trim_aln_right, - numwidth, - 3, - rowlen, - hp->strand); - - fprintf(fp, "\n%d cols, %d ids (%3.1f%%), %d gaps (%3.1f%%)\n", - hp->internal_alignmentlength, - hp->matches, - hp->id, - hp->internal_indels, - hp->internal_alignmentlength > 0 ? - 100.0 * hp->internal_indels / hp->internal_alignmentlength : - 0.0); - -#if 0 - fprintf(fp, "%d kmers, %d score, %d gap opens. %s\n", - hp->count, hp->nwscore, hp->nwgaps, - hp->accepted ? "accepted" : "not accepted"); -#endif - } - } - else if (opt_output_no_hits) - { - fprintf(fp, "\n"); - fprintf(fp,"Query >%s\n", query_head); - fprintf(fp,"No hits\n"); - } -} - -bool inline nucleotide_equal(char a, char b) -{ - return chrmap_4bit[(int)a] == chrmap_4bit[(int)b]; -} - -void build_sam_strings(char * alignment, - char * queryseq, - char * targetseq, - xstring * cigar, - xstring * md) -{ - /* - convert cigar to sam format: - add "1" to operations without run length - flip direction of indels in cigar string - - build MD-string with substitutions - */ - - cigar->empty(); - md->empty(); - - char * p = alignment; - char * e = p + strlen(p); - - int qpos = 0; - int tpos = 0; - - int matched = 0; - bool flag = 0; /* 1: MD string ends with a number */ - - while(p < e) - { - int run = 1; - int scanned = 0; - sscanf(p, "%d%n", & run, & scanned); - p += scanned; - char op = *p++; - - switch (op) - { - case 'M': - cigar->add_d(run); - cigar->add_c('M'); - - for(int i=0; iadd_d(matched); - matched = 0; - flag = 1; - } - - md->add_c(targetseq[tpos]); - flag = 0; - } - qpos++; - tpos++; - } - - break; - - case 'D': - cigar->add_d(run); - cigar->add_c('I'); - qpos += run; - break; - - case 'I': - cigar->add_d(run); - cigar->add_c('D'); - - if (!flag) - { - md->add_d(matched); - matched = 0; - flag = 1; - } - - md->add_c('^'); - for(int i=0; iadd_c(targetseq[tpos++]); - flag = 0; - break; - } - } - - if (!flag) - { - md->add_d(matched); - matched = 0; - flag = 1; - } -} - -void results_show_samheader(FILE * fp, - char * cmdline, - char * dbname) -{ - if (opt_samout && opt_samheader) - { - fprintf(fp, "@HD\tVN:1.0\tSO:unsorted\tGO:query\n"); - - for(unsigned long i=0; i 0) - { - double top_hit_id = hits[0].id; - - for(int t = 0; t < hitcount; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - /* - - */ - - xstring cigar; - xstring md; - - build_sam_strings(hp->nwalignment, - hp->strand ? rc : qsequence, - db_getsequence(hp->target), - & cigar, - & md); - - fprintf(fp, - "%s\t%u\t%s\t%lu\t%u\t%s\t%s\t%lu\t%lu\t%s\t%s\t" - "AS:i:%.0f\tXN:i:%d\tXM:i:%d\tXO:i:%d\t" - "XG:i:%d\tNM:i:%d\tMD:Z:%s\tYT:Z:%s\n", - query_head, - 0x10 * hp->strand | (t>0 ? 0x100 : 0), - db_getheader(hp->target), - 1UL, - 255, - cigar.get_string(), - "*", - 0UL, - 0UL, - hp->strand ? rc : qsequence, - "*", - hp->id, - 0, - hp->mismatches, - hp->internal_gaps, - hp->internal_indels, - hp->mismatches + hp->internal_indels, - md.get_string(), - "UU"); - } - } - else if (opt_output_no_hits) - { - fprintf(fp, - "%s\t%u\t%s\t%lu\t%u\t%s\t%s\t%lu\t%lu\t%s\t%s\n", - query_head, - 0x04, - "*", - 0UL, - 255, - "*", - "*", - 0UL, - 0UL, - qsequence, - "*"); - } -} diff --git a/source/vsearch_src/results.h b/source/vsearch_src/results.h deleted file mode 100755 index 7eaa764c..00000000 --- a/source/vsearch_src/results.h +++ /dev/null @@ -1,107 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void results_show_alnout(FILE * fp, - struct hit * hits, - int hitcount, - char * query_head, - char * qsequence, - long qseqlen, - char * rc); - -void results_show_blast6out_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc); - -void results_show_uc_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc); - -void results_show_userout_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc); - -void results_show_fastapairs_one(FILE * fp, - struct hit * hp, - char * query_head, - char * qsequence, - long qseqlen, - char * rc); - -void results_show_samheader(FILE * fp, - char * cmdline, - char * dbname); - -void results_show_samout(FILE * fp, - struct hit * hits, - int hitcount, - char * query_head, - char * qsequence, - long qseqlen, - char * rc); diff --git a/source/vsearch_src/search.cc b/source/vsearch_src/search.cc deleted file mode 100755 index ec240852..00000000 --- a/source/vsearch_src/search.cc +++ /dev/null @@ -1,678 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static struct searchinfo_s * si_plus; -static struct searchinfo_s * si_minus; - - -/* global constants/data, no need for synchronization */ -static int tophits; /* the maximum number of hits to keep */ -static int seqcount; /* number of database sequences */ -static fasta_handle query_fasta_h; - -/* global data protected by mutex */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -static pthread_mutex_t mutex_input; -static pthread_mutex_t mutex_output; -static pthread_t * pthread; -static pthread_attr_t attr; -#endif - -static int qmatches; -static int queries; -static int * dbmatched; -static FILE * fp_samout = 0; -static FILE * fp_alnout = 0; -static FILE * fp_userout = 0; -static FILE * fp_blast6out = 0; -static FILE * fp_uc = 0; -static FILE * fp_fastapairs = 0; -static FILE * fp_matched = 0; -static FILE * fp_notmatched = 0; -static FILE * fp_dbmatched = 0; -static FILE * fp_dbnotmatched = 0; - -void search_output_results(int hit_count, - struct hit * hits, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_lock(&mutex_output); -#endif - /* show results */ - long toreport = MIN(opt_maxhits, hit_count); - - if (fp_alnout) - results_show_alnout(fp_alnout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_samout) - results_show_samout(fp_samout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (toreport) - { - double top_hit_id = hits[0].id; - - for(int t = 0; t < toreport; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - if (fp_fastapairs) - results_show_fastapairs_one(fp_fastapairs, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_uc) - if ((t==0) || opt_uc_allhits) - results_show_uc_one(fp_uc, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - } - else if (opt_output_no_hits) - { - if (fp_uc) - results_show_uc_one(fp_uc, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - - if (hit_count) - { - if (opt_matched) - fasta_print(fp_matched, - query_head, - qsequence, - qseqlen); - } - else - { - if (opt_notmatched) - fasta_print(fp_notmatched, - query_head, - qsequence, - qseqlen); - } - - /* update matching db sequences */ - for (int i=0; i < hit_count; i++) - if (hits[i].accepted) - dbmatched[hits[i].target]++; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_output); -#endif -} - -int search_query(long t) -{ - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_minus+t : si_plus+t; - - /* mask query */ - if (opt_qmask == MASK_DUST) - { - dust(si->qsequence, si->qseqlen); - } - else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) - { - hardmask(si->qsequence, si->qseqlen); - } - - /* perform search */ - search_onequery(si, opt_qmask); - } - - struct hit * hits; - int hit_count; - - search_joinhits(si_plus + t, - opt_strand > 1 ? si_minus + t : 0, - & hits, - & hit_count); - - search_output_results(hit_count, - hits, - si_plus[t].query_head, - si_plus[t].qseqlen, - si_plus[t].qsequence, - opt_strand > 1 ? si_minus[t].qsequence : 0); - - /* free memory for alignment strings */ - for(int i=0; iquery_head_len = query_head_len; - si->qseqlen = qseqlen; - si->query_no = query_no; - si->qsize = qsize; - si->strand = s; - - /* allocate more memory for header and sequence, if necessary */ - - if (si->query_head_len + 1 > si->query_head_alloc) - { - si->query_head_alloc = si->query_head_len + 2001; - si->query_head = (char*) - xrealloc(si->query_head, (size_t)(si->query_head_alloc)); - } - - if (si->qseqlen + 1 > si->seq_alloc) - { - si->seq_alloc = si->qseqlen + 2001; - si->qsequence = (char*) - xrealloc(si->qsequence, (size_t)(si->seq_alloc)); - } - } - - /* plus strand: copy header and sequence */ - strcpy(si_plus[t].query_head, qhead); - strcpy(si_plus[t].qsequence, qseq); - - /* get progress as amount of input file read */ - unsigned long progress = fasta_get_position(query_fasta_h); - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); -#endif - /* minus strand: copy header and reverse complementary sequence */ - if (opt_strand > 1) - { - strcpy(si_minus[t].query_head, si_plus[t].query_head); - reverse_complement(si_minus[t].qsequence, - si_plus[t].qsequence, - si_plus[t].qseqlen); - } - - int match = search_query(t); - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - /* lock mutex for update of global data and output */ - pthread_mutex_lock(&mutex_output); -#endif - /* update stats */ - queries++; - - if (match) - qmatches++; - - /* show progress */ - progress_update(progress); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_output); -#endif - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_unlock(&mutex_input); -#endif - break; - } - } -} - -void search_thread_init(struct searchinfo_s * si) -{ - /* thread specific initialiation */ - si->uh = unique_init(); - si->kmers = (count_t *) xmalloc(seqcount * sizeof(count_t) + 32); - si->m = minheap_init(tophits); - si->hits = (struct hit *) xmalloc - (sizeof(struct hit) * (tophits) * opt_strand); - si->qsize = 1; - si->query_head_alloc = 0; - si->query_head = 0; - si->seq_alloc = 0; - si->qsequence = 0; -#ifdef COMPARENONVECTORIZED - si->nw = nw_init(); -#else - si->nw = 0; -#endif - si->s = search16_init(opt_match, - opt_mismatch, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); -} - -void search_thread_exit(struct searchinfo_s * si) -{ - /* thread specific clean up */ - search16_exit(si->s); -#ifdef COMPARENONVECTORIZED - nw_exit(si->nw); -#endif - unique_exit(si->uh); - free(si->hits); - minheap_exit(si->m); - free(si->kmers); - if (si->query_head) - free(si->query_head); - if (si->qsequence) - free(si->qsequence); -} - - - -void * search_thread_worker(void * vp) -{ - long t = (intptr_t) vp; - search_thread_run(t); - return 0; -} - -void search_thread_worker_run() -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* initialize threads, start them, join them and return */ - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* init and create worker threads, put them into stand-by mode */ - for(int t=0; t seqcount)) - opt_maxrejects = seqcount; - - if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) - opt_maxaccepts = seqcount; - - tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; - - if (tophits > seqcount) - tophits = seqcount; -} - -void search_done() -{ - /* clean up, global */ - dbindex_free(); - db_free(); - if (opt_matched) - fclose(fp_matched); - if (opt_notmatched) - fclose(fp_notmatched); - if (opt_fastapairs) - fclose(fp_fastapairs); - if (fp_uc) - fclose(fp_uc); - if (fp_blast6out) - fclose(fp_blast6out); - if (fp_userout) - fclose(fp_userout); - if (fp_alnout) - fclose(fp_alnout); - if (fp_samout) - fclose(fp_samout); - show_rusage(); -} - -void usearch_global(char * cmdline, char * progheader) -{ - search_prep(cmdline, progheader); - - if (opt_dbmatched) - { - fp_dbmatched = fopen(opt_dbmatched, "w"); - if (! fp_dbmatched) - fatal("Unable to open dbmatched output file for writing"); - } - - if (opt_dbnotmatched) - { - fp_dbnotmatched = fopen(opt_dbnotmatched, "w"); - if (! fp_dbnotmatched) - fatal("Unable to open dbnotmatched output file for writing"); - } - - dbmatched = (int*) xmalloc(seqcount * sizeof(int*)); - memset(dbmatched, 0, seqcount * sizeof(int*)); - - /* prepare reading of queries */ - qmatches = 0; - queries = 0; - query_fasta_h = fasta_open(opt_usearch_global); - - /* allocate memory for thread info */ - si_plus = (struct searchinfo_s *) xmalloc(opt_threads * - sizeof(struct searchinfo_s)); - if (opt_strand > 1) - si_minus = (struct searchinfo_s *) xmalloc(opt_threads * - sizeof(struct searchinfo_s)); - else - si_minus = 0; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); - - /* init mutexes for input and output */ - pthread_mutex_init(&mutex_input, NULL); - pthread_mutex_init(&mutex_output, NULL); -#endif - - progress_init("Searching", fasta_get_size(query_fasta_h)); - search_thread_worker_run(); - progress_done(); - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - pthread_mutex_destroy(&mutex_output); - pthread_mutex_destroy(&mutex_input); - free(pthread); -#endif - - free(si_plus); - if (si_minus) - free(si_minus); - - fasta_close(query_fasta_h); - - if (!opt_quiet) - fprintf(stderr, "Matching query sequences: %d of %d (%.2f%%)\n", - qmatches, queries, 100.0 * qmatches / queries); - - if (opt_log) - fprintf(fp_log, "Matching query sequences: %d of %d (%.2f%%)\n", - qmatches, queries, 100.0 * qmatches / queries); - - if (opt_dbmatched || opt_dbnotmatched) - { - for(long i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void usearch_global(char * cmdline, char * progheader); diff --git a/source/vsearch_src/searchcore.cc b/source/vsearch_src/searchcore.cc deleted file mode 100755 index 07786026..00000000 --- a/source/vsearch_src/searchcore.cc +++ /dev/null @@ -1,764 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* per thread data */ - -inline int hit_compare_byid_typed(struct hit * x, struct hit * y) -{ - // high id, then low id - // early target, then late target - - if (x->rejected < y->rejected) - return -1; - else - if (x->rejected > y->rejected) - return +1; - else - if (x->rejected == 1) - return 0; - else - if (x->aligned > y->aligned) - return -1; - else - if (x->aligned < y->aligned) - return +1; - else - if (x->aligned == 0) - return 0; - else - if (x->id > y->id) - return -1; - else - if (x->id < y->id) - return +1; - else - if (x->target < y->target) - return -1; - else - if (x->target > y->target) - return +1; - else - return 0; -} - -inline int hit_compare_bysize_typed(struct hit * x, struct hit * y) -{ - // high abundance, then low abundance - // high id, then low id - // early target, then late target - - if (x->rejected < y->rejected) - return -1; - else - if (x->rejected > y->rejected) - return +1; - else - if (x->rejected == 1) - return 0; - else - if (x->aligned > y->aligned) - return -1; - else - if (x->aligned < y->aligned) - return +1; - else - if (x->aligned == 0) - return 0; - else - if (db_getabundance(x->target) > db_getabundance(y->target)) - return -1; - else - if (db_getabundance(x->target) < db_getabundance(y->target)) - return +1; - else - if (x->id > y->id) - return -1; - else - if (x->id < y->id) - return +1; - else - if (x->target < y->target) - return -1; - else - if (x->target > y->target) - return +1; - else - return 0; -} - -int hit_compare_byid(const void * a, const void * b) -{ - return hit_compare_byid_typed((struct hit *) a, (struct hit *) b); -} - -int hit_compare_bysize(const void * a, const void * b) -{ - return hit_compare_bysize_typed((struct hit *) a, (struct hit *) b); -} - -bool search_enough_kmers(struct searchinfo_s * si, - unsigned int count) -{ - return (count >= opt_minwordmatches) || (count >= si->kmersamplecount); -} - -inline void topscore_insert(int i, struct searchinfo_s * si) -{ - count_t count = si->kmers[i]; - - /* ignore sequences with very few kmer matches */ - - if (!search_enough_kmers(si, count)) - return; - - unsigned int seqno = dbindex_getmapping(i); - unsigned int length = db_getsequencelen(seqno); - - elem_t novel; - novel.count = count; - novel.seqno = seqno; - novel.length = length; - - minheap_add(si->m, & novel); -} - -void _mm_print_epi8(__m128i x) -{ - unsigned char * y = (unsigned char*)&x; - for (int i=0; i<16; i++) - printf("%s%02x", (i>0?" ":""), y[15-i]); -} - -void search_topscores(struct searchinfo_s * si) -{ - /* - Count the kmer hits in each database sequence and - make a sorted list of a given number (th) - of the database sequences with the highest number of matching kmers. - These are stored in the min heap array. - */ - - /* count kmer hits in the database sequences */ - int indexed_count = dbindex_getcount(); - - /* zero counts */ - memset(si->kmers, 0, indexed_count * sizeof(count_t)); - - minheap_empty(si->m); - - for(unsigned int i=0; ikmersamplecount; i++) - { - unsigned int kmer = si->kmersample[i]; - unsigned char * bitmap = dbindex_getbitmap(kmer); - - if (bitmap) - { - if (ssse3_present) { - #ifdef __SSE2__ -#else - increment_counters_from_bitmap_ssse3(si->kmers, bitmap, indexed_count); -#endif - }else{ - #ifdef __SSE2__ - increment_counters_from_bitmap_sse2(si->kmers, bitmap, indexed_count); - #endif - } - } - else - { - unsigned int * list = dbindex_getmatchlist(kmer); - unsigned int count = dbindex_getmatchcount(kmer); - for(unsigned int j=0; j < count; j++) - si->kmers[list[j]]++; - } - } - - for(int i=0; i < indexed_count; i++) - topscore_insert(i, si); - - minheap_sort(si->m); -} - -int seqncmp(char * a, char * b, unsigned long n) -{ - for(unsigned int i = 0; i y) - return +1; - } - return 0; -} - - -void align_trim(struct hit * hit) -{ - /* trim alignment and fill in info */ - /* assumes that the hit has been aligned */ - - /* info for semi-global alignment (without gaps at ends) */ - - hit->trim_aln_left = 0; - hit->trim_q_left = 0; - hit->trim_t_left = 0; - hit->trim_aln_right = 0; - hit->trim_q_right = 0; - hit->trim_t_right = 0; - - /* left trim alignment */ - - char * p = hit->nwalignment; - long run = 1; - int scanlength = 0; - sscanf(p, "%ld%n", &run, &scanlength); - char op = *(p+scanlength); - if (op != 'M') - { - hit->trim_aln_left = 1 + scanlength; - if (op == 'D') - hit->trim_q_left = run; - else - hit->trim_t_left = run; - } - - /* right trim alignment */ - - char * e = hit->nwalignment + strlen(hit->nwalignment); - p = e - 1; - op = *p; - if (op != 'M') - { - while (*(p-1) <= '9') - p--; - run = 1; - sscanf(p, "%ld", &run); - hit->trim_aln_right = e - p; - if (op == 'D') - hit->trim_q_right = run; - else - hit->trim_t_right = run; - } - - hit->internal_alignmentlength = hit->nwalignmentlength - - hit->trim_q_left - hit->trim_t_left - - hit->trim_q_right - hit->trim_t_right; - - hit->internal_indels = hit->nwindels - - hit->trim_q_left - hit->trim_t_left - - hit->trim_q_right - hit->trim_t_right; - - hit->internal_gaps = hit->nwgaps - - (hit->trim_q_left + hit->trim_t_left > 0 ? 1 : 0) - - (hit->trim_q_right + hit->trim_t_right > 0 ? 1 : 0); - - /* CD-HIT */ - hit->id0 = hit->shortest > 0 ? 100.0 * hit->matches / hit->shortest : 0.0; - /* all diffs */ - hit->id1 = hit->nwalignmentlength > 0 ? - 100.0 * hit->matches / hit->nwalignmentlength : 0.0; - /* internal diffs */ - hit->id2 = hit->internal_alignmentlength > 0 ? - 100.0 * hit->matches / hit->internal_alignmentlength : 0.0; - /* Marine Biology Lab */ - hit->id3 = MAX(0.0, 100.0 * (1.0 - (1.0 * (hit->mismatches + hit->nwgaps) / - hit->longest))); - /* BLAST */ - hit->id4 = hit->nwalignmentlength > 0 ? - 100.0 * hit->matches / hit->nwalignmentlength : 0.0; - - switch (opt_iddef) - { - case 0: - hit->id = hit->id0; - break; - case 1: - hit->id = hit->id1; - break; - case 2: - hit->id = hit->id2; - break; - case 3: - hit->id = hit->id3; - break; - case 4: - hit->id = hit->id4; - break; - } -} - -int search_acceptable_unaligned(struct searchinfo_s * si, - int target) -{ - /* consider whether a hit satisfy accept criteria before alignment */ - - char * qseq = si->qsequence; - char * dlabel = db_getheader(target); - char * dseq = db_getsequence(target); - long dseqlen = db_getsequencelen(target); - long tsize = db_getabundance(target); - - if ( - /* maxqsize */ - (si->qsize <= opt_maxqsize) - && - /* mintsize */ - (tsize >= opt_mintsize) - && - /* minsizeratio */ - (si->qsize >= opt_minsizeratio * tsize) - && - /* maxsizeratio */ - (si->qsize <= opt_maxsizeratio * tsize) - && - /* minqt */ - (si->qseqlen >= opt_minqt * dseqlen) - && - /* maxqt */ - (si->qseqlen <= opt_maxqt * dseqlen) - && - /* minsl */ - (si->qseqlen < dseqlen ? - si->qseqlen >= opt_minsl * dseqlen : - dseqlen >= opt_minsl * si->qseqlen) - && - /* maxsl */ - (si->qseqlen < dseqlen ? - si->qseqlen <= opt_maxsl * dseqlen : - dseqlen <= opt_maxsl * si->qseqlen) - && - /* idprefix */ - ((si->qseqlen >= opt_idprefix) && - (dseqlen >= opt_idprefix) && - (!seqncmp(qseq, dseq, opt_idprefix))) - && - /* idsuffix */ - ((si->qseqlen >= opt_idsuffix) && - (dseqlen >= opt_idsuffix) && - (!seqncmp(qseq+si->qseqlen-opt_idsuffix, - dseq+dseqlen-opt_idsuffix, - opt_idsuffix))) - && - /* self */ - ((!opt_self) || (strcmp(si->query_head, dlabel))) - && - /* selfid */ - ((!opt_selfid) || - (si->qseqlen != dseqlen) || - (seqncmp(qseq, dseq, si->qseqlen))) - ) - { - /* needs further consideration */ - return 1; - } - else - { - /* reject */ - return 0; - } -} - -int search_acceptable_aligned(struct searchinfo_s * si, - struct hit * hit) -{ - if (/* weak_id */ - (hit->id >= 100.0 * opt_weak_id) && - /* maxsubs */ - (hit->mismatches <= opt_maxsubs) && - /* maxgaps */ - (hit->internal_gaps <= opt_maxgaps) && - /* mincols */ - (hit->internal_alignmentlength >= opt_mincols) && - /* leftjust */ - ((!opt_leftjust) || (hit->trim_q_left + - hit->trim_t_left == 0)) && - /* rightjust */ - ((!opt_rightjust) || (hit->trim_q_right + - hit->trim_t_right == 0)) && - /* query_cov */ - (hit->internal_alignmentlength >= opt_query_cov * si->qseqlen) && - /* target_cov */ - (hit->internal_alignmentlength >= - opt_target_cov * db_getsequencelen(hit->target)) && - /* maxid */ - (hit->id <= 100.0 * opt_maxid) && - /* mid */ - (100.0 * hit->matches / (hit->matches + hit->mismatches) >= opt_mid) && - /* maxdiffs */ - (hit->mismatches + hit->internal_indels <= opt_maxdiffs)) - { - if (hit->id >= 100.0 * opt_id) - { - /* accepted */ - hit->accepted = 1; - hit->weak = 0; - return 1; - } - else - { - /* rejected, but weak hit */ - hit->rejected = 1; - hit->weak = 1; - return 0; - } - } - else - { - /* rejected */ - hit->rejected = 1; - hit->weak = 0; - return 0; - } -} - -void align_delayed(struct searchinfo_s * si) -{ - /* compute global alignment */ - - unsigned int target_list[MAXDELAYED]; - CELL nwscore_list[MAXDELAYED]; - unsigned short nwalignmentlength_list[MAXDELAYED]; - unsigned short nwmatches_list[MAXDELAYED]; - unsigned short nwmismatches_list[MAXDELAYED]; - unsigned short nwgaps_list[MAXDELAYED]; - char * nwcigar_list[MAXDELAYED]; - - int target_count = 0; - - for(int x = si->finalized; x < si->hit_count; x++) - { - struct hit * hit = si->hits + x; - if (! hit->rejected) - target_list[target_count++] = hit->target; - } - - if (target_count) - search16(si->s, - target_count, - target_list, - nwscore_list, - nwalignmentlength_list, - nwmatches_list, - nwmismatches_list, - nwgaps_list, - nwcigar_list); - - int i = 0; - - for(int x = si->finalized; x < si->hit_count; x++) - { - /* maxrejects or maxaccepts reached - ignore remaining hits */ - if ((si->rejects < opt_maxrejects) && (si->accepts < opt_maxaccepts)) - { - struct hit * hit = si->hits + x; - - if (hit->rejected) - { - si->rejects++; - } - else - { - long target = hit->target; - long nwscore = nwscore_list[i]; - - char * nwcigar; - long nwalignmentlength; - long nwmatches; - long nwmismatches; - long nwgaps; - - long dseqlen = db_getsequencelen(target); - - if (nwscore == SHRT_MAX) - { - /* In case the SIMD aligner cannot align, - perform a new alignment with the - linear memory aligner */ - - char * dseq = db_getsequence(target); - - if (nwcigar_list[i]) - free(nwcigar_list[i]); - - nwcigar = xstrdup(si->lma->align(si->qsequence, - dseq, - si->qseqlen, - dseqlen)); - - si->lma->alignstats(nwcigar, - si->qsequence, - dseq, - & nwscore, - & nwalignmentlength, - & nwmatches, - & nwmismatches, - & nwgaps); - } - else - { - nwalignmentlength = nwalignmentlength_list[i]; - nwmatches = nwmatches_list[i]; - nwmismatches = nwmismatches_list[i]; - nwgaps = nwgaps_list[i]; - nwcigar = nwcigar_list[i]; - } - - hit->aligned = 1; - hit->shortest = MIN(si->qseqlen, dseqlen); - hit->longest = MAX(si->qseqlen, dseqlen); - hit->nwalignment = nwcigar; - hit->nwscore = nwscore; - hit->nwdiff = nwalignmentlength - nwmatches; - hit->nwgaps = nwgaps; - hit->nwindels = nwalignmentlength - nwmatches - nwmismatches; - hit->nwalignmentlength = nwalignmentlength; - hit->nwid = 100.0 * (nwalignmentlength - hit->nwdiff) / - nwalignmentlength; - hit->matches = nwalignmentlength - hit->nwdiff; - hit->mismatches = hit->nwdiff - hit->nwindels; - - /* trim alignment and compute numbers excluding terminal gaps */ - align_trim(hit); - - /* test accept/reject criteria after alignment */ - if (search_acceptable_aligned(si, hit)) - si->accepts++; - else - si->rejects++; - - i++; - } - } - } - - /* free ignored alignments */ - while (i < target_count) - free(nwcigar_list[i++]); - - si->finalized = si->hit_count; -} - -void search_onequery(struct searchinfo_s * si, int seqmask) -{ - si->hit_count = 0; - - search16_qprep(si->s, si->qsequence, si->qseqlen); - - si->lma = new LinearMemoryAligner; - - long * scorematrix = si->lma->scorematrix_create(opt_match, opt_mismatch); - - si->lma->set_parameters(scorematrix, - opt_gap_open_query_left, - opt_gap_open_target_left, - opt_gap_open_query_interior, - opt_gap_open_target_interior, - opt_gap_open_query_right, - opt_gap_open_target_right, - opt_gap_extension_query_left, - opt_gap_extension_target_left, - opt_gap_extension_query_interior, - opt_gap_extension_target_interior, - opt_gap_extension_query_right, - opt_gap_extension_target_right); - - /* extract unique kmer samples from query*/ - unique_count(si->uh, opt_wordlength, - si->qseqlen, si->qsequence, - & si->kmersamplecount, & si->kmersample, seqmask); - - /* find database sequences with the most kmer hits */ - search_topscores(si); - - /* analyse targets with the highest number of kmer hits */ - si->accepts = 0; - si->rejects = 0; - si->finalized = 0; - - int delayed = 0; - - int t = 0; - while ((si->finalized + delayed < opt_maxaccepts + opt_maxrejects - 1) && - (si->rejects < opt_maxrejects) && - (si->accepts < opt_maxaccepts) && - (!minheap_isempty(si->m))) - { - elem_t e = minheap_poplast(si->m); - - struct hit * hit = si->hits + si->hit_count; - - hit->target = e.seqno; - hit->count = e.count; - hit->strand = si->strand; - hit->rejected = 0; - hit->accepted = 0; - hit->aligned = 0; - hit->weak = 0; - hit->nwalignment = 0; - - /* Test some accept/reject criteria before alignment */ - if (search_acceptable_unaligned(si, e.seqno)) - { - delayed++; - } - else - { - hit->rejected = 1; - } - - si->hit_count++; - - if (delayed == MAXDELAYED) - { - align_delayed(si); - delayed = 0; - } - t++; - } - if (delayed > 0) - align_delayed(si); - - delete si->lma; - free(scorematrix); -} - -struct hit * search_findbest2_byid(struct searchinfo_s * si_p, - struct searchinfo_s * si_m) -{ - struct hit * best = 0; - - for(int i=0; i < si_p->hit_count; i++) - if ((!best) || (hit_compare_byid_typed(si_p->hits + i, best) < 0)) - best = si_p->hits + i; - - if (opt_strand>1) - for(int i=0; i < si_m->hit_count; i++) - if ((!best) || (hit_compare_byid_typed(si_m->hits + i, best) < 0)) - best = si_m->hits + i; - - if (best && ! best->accepted) - best = 0; - - return best; -} - -struct hit * search_findbest2_bysize(struct searchinfo_s * si_p, - struct searchinfo_s * si_m) -{ - struct hit * best = 0; - - for(int i=0; i < si_p->hit_count; i++) - if ((!best) || (hit_compare_bysize_typed(si_p->hits + i, best) < 0)) - best = si_p->hits + i; - - if (opt_strand>1) - for(int i=0; i < si_m->hit_count; i++) - if ((!best) || (hit_compare_bysize_typed(si_m->hits + i, best) < 0)) - best = si_m->hits + i; - - if (best && ! best->accepted) - best = 0; - - return best; -} - -void search_joinhits(struct searchinfo_s * si_p, - struct searchinfo_s * si_m, - struct hit * * hitsp, - int * hit_count) -{ - /* join and sort accepted hits from both strands */ - /* remove and unallocate unaccepted hits */ - - int a = 0; - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_m : si_p; - for(int i=0; ihit_count; i++) - if (si->hits[i].accepted) - a++; - } - - struct hit * hits = (struct hit *) xmalloc(a * sizeof(struct hit)); - - a = 0; - - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_m : si_p; - for(int i=0; ihit_count; i++) - { - struct hit * h = si->hits + i; - if (h->accepted) - hits[a++] = *h; - else if (h->aligned) - free(h->nwalignment); - } - } - - qsort(hits, a, sizeof(struct hit), hit_compare_byid); - - *hitsp = hits; - *hit_count = a; -} diff --git a/source/vsearch_src/searchcore.h b/source/vsearch_src/searchcore.h deleted file mode 100755 index a8e08637..00000000 --- a/source/vsearch_src/searchcore.h +++ /dev/null @@ -1,166 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -//#define COMPARENONVECTORIZED - -/* the number of alignments that can be delayed */ -#define MAXDELAYED 8 - -/* Default minimum number of word matches for word lengths 7-15 */ -const int minwordmatches_defaults[] = - { -1, -1, -1, -1, -1, -1, -1, 14, 12, 11, 10, 9, 8, 7, 5, 3 }; - -struct hit -{ - int target; - int strand; - - /* candidate info */ - unsigned int count; /* number of unique kmers shared with query */ - - bool accepted; /* is it accepted? */ - bool rejected; /* is it rejected? */ - bool aligned; /* has this hit been aligned */ - bool weak; /* weak hits are aligned with id > weak_id */ - - /* info about global alignment, including terminal gaps */ - - int nwscore; /* alignment score */ - int nwdiff; /* indels and mismatches in global alignment */ - int nwgaps; /* gaps in global alignment */ - int nwindels; /* indels in global alignment */ - int nwalignmentlength; /* length of global alignment */ - double nwid; /* percent identity of global alignment */ - char * nwalignment; /* alignment string (cigar) of global alignment */ - int matches; - int mismatches; - - /* info about alignment excluding terminal gaps */ - - int internal_alignmentlength; - int internal_gaps; - int internal_indels; - int trim_q_left; - int trim_q_right; - int trim_t_left; - int trim_t_right; - int trim_aln_left; - int trim_aln_right; - - /* more info */ - - double id; /* identity used for ranking */ - double id0, id1, id2, id3, id4; - - int shortest; /* length of shortest of query and target */ - int longest; /* length of longest of query and target */ -}; - -/* type of kmer hit counter element remember possibility of overflow */ -typedef unsigned short count_t; - -struct searchinfo_s -{ - int query_no; /* query number, zero-based */ - int strand; /* strand of query being analysed */ - int qsize; /* query abundance */ - int query_head_len; /* query header length */ - int query_head_alloc; /* bytes allocated for the header */ - char * query_head; /* query header */ - int qseqlen; /* query length */ - int seq_alloc; /* bytes allocated for the query sequence */ - char * qsequence; /* query sequence */ - unsigned int kmersamplecount; /* number of kmer samples from query */ - unsigned int * kmersample; /* list of kmers sampled from query */ - count_t * kmers; /* list of kmer counts for each db seq */ - struct hit * hits; /* list of hits */ - int hit_count; /* number of hits in the above list */ - struct uhandle_s * uh; /* unique kmer finder instance */ - struct s16info_s * s; /* SIMD aligner instance */ - struct nwinfo_s * nw; /* NW aligner instance */ - LinearMemoryAligner * lma; /* Linear memory aligner instance pointer */ - int accepts; /* number of accepts */ - int rejects; /* number of rejects */ - minheap_t * m; /* min heap with the top kmer db seqs */ - int finalized; -}; - -void search_onequery(struct searchinfo_s * si, int seqmask); - -struct hit * search_findbest2_byid(struct searchinfo_s * si_p, - struct searchinfo_s * si_m); - -struct hit * search_findbest2_bysize(struct searchinfo_s * si_p, - struct searchinfo_s * si_m); - -int search_acceptable_unaligned(struct searchinfo_s * si, int target); - -int search_acceptable_aligned(struct searchinfo_s * si, - struct hit * hit); - -void align_trim(struct hit * hit); - -void search_joinhits(struct searchinfo_s * si_p, - struct searchinfo_s * si_m, - struct hit * * hits, - int * hit_count); - -bool search_enough_kmers(struct searchinfo_s * si, - unsigned int count); diff --git a/source/vsearch_src/searchexact.cc b/source/vsearch_src/searchexact.cc deleted file mode 100755 index 3ade09d6..00000000 --- a/source/vsearch_src/searchexact.cc +++ /dev/null @@ -1,717 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static struct searchinfo_s * si_plus; -static struct searchinfo_s * si_minus; - - -/* global constants/data, no need for synchronization */ -static int tophits; /* the maximum number of hits to keep */ -static int seqcount; /* number of database sequences */ -static fasta_handle query_fasta_h; - -/* global data protected by mutex */ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) -static pthread_mutex_t mutex_input; -static pthread_mutex_t mutex_output; -static pthread_t * pthread; -static pthread_attr_t attr; -#endif - -static int qmatches; -static int queries; -static int * dbmatched; -static FILE * fp_samout = 0; -static FILE * fp_alnout = 0; -static FILE * fp_userout = 0; -static FILE * fp_blast6out = 0; -static FILE * fp_uc = 0; -static FILE * fp_fastapairs = 0; -static FILE * fp_matched = 0; -static FILE * fp_notmatched = 0; -static FILE * fp_dbmatched = 0; -static FILE * fp_dbnotmatched = 0; - -void add_hit(struct searchinfo_s * si, unsigned long seqno) -{ - if (search_acceptable_unaligned(si, seqno)) - { - struct hit * hp = si->hits + si->hit_count; - si->hit_count++; - - hp->target = seqno; - hp->strand = si->strand; - - hp->count = 0; - - hp->nwscore = si->qseqlen * opt_match; - hp->nwdiff = 0; - hp->nwgaps = 0; - hp->nwindels = 0; - hp->nwalignmentlength = si->qseqlen; - hp->nwid = 100.0; - hp->matches = si->qseqlen; - hp->mismatches = 0; - - int ret = sprintf(hp->nwalignment, "%dM", si->qseqlen); - if ((ret == -1) || (!hp->nwalignment)) - fatal("Out of memory"); - - hp->internal_alignmentlength = si->qseqlen; - hp->internal_gaps = 0; - hp->internal_indels = 0; - hp->trim_q_left = 0; - hp->trim_q_right = 0; - hp->trim_t_left = 0; - hp->trim_t_right = 0; - hp->trim_aln_left = 0; - hp->trim_aln_right = 0; - - hp->id = 100.0; - hp->id0 = 100.0; - hp->id1 = 100.0; - hp->id2 = 100.0; - hp->id3 = 100.0; - hp->id4 = 100.0; - - hp->shortest = si->qseqlen; - hp->longest = si->qseqlen; - - hp->aligned = 1; - - hp->accepted = 0; - hp->rejected = 0; - hp->weak = 0; - (void) search_acceptable_aligned(si, hp); - } -} - -void search_exact_onequery(struct searchinfo_s * si) -{ - dbhash_search_info_s info; - - char * seq = si->qsequence; - unsigned long seqlen = si->qseqlen; - char * normalized = (char*) xmalloc(seqlen+1); - string_normalize(normalized, seq, seqlen); - - si->hit_count = 0; - - long ret = dbhash_search_first(normalized, seqlen, & info); - while (ret >= 0) - { - add_hit(si, ret); - ret = dbhash_search_next(&info); - } - free(normalized); -} - -void search_exact_output_results(int hit_count, - struct hit * hits, - char * query_head, - int qseqlen, - char * qsequence, - char * qsequence_rc) -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_lock(&mutex_output); -#endif - /* show results */ - long toreport = MIN(opt_maxhits, hit_count); - - if (fp_alnout) - results_show_alnout(fp_alnout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_samout) - results_show_samout(fp_samout, - hits, - toreport, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (toreport) - { - double top_hit_id = hits[0].id; - - for(int t = 0; t < toreport; t++) - { - struct hit * hp = hits + t; - - if (opt_top_hits_only && (hp->id < top_hit_id)) - break; - - if (fp_fastapairs) - results_show_fastapairs_one(fp_fastapairs, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_uc) - if ((t==0) || opt_uc_allhits) - results_show_uc_one(fp_uc, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - hp, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - } - else if (opt_output_no_hits) - { - if (fp_uc) - results_show_uc_one(fp_uc, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_userout) - results_show_userout_one(fp_userout, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - - if (fp_blast6out) - results_show_blast6out_one(fp_blast6out, - 0, - query_head, - qsequence, - qseqlen, - qsequence_rc); - } - - if (hit_count) - { - if (opt_matched) - fasta_print(fp_matched, - query_head, - qsequence, - qseqlen); - } - else - { - if (opt_notmatched) - fasta_print(fp_notmatched, - query_head, - qsequence, - qseqlen); - } - - /* update matching db sequences */ - for (int i=0; i < hit_count; i++) - if (hits[i].accepted) - dbmatched[hits[i].target]++; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#endif -} - -int search_exact_query(long t) -{ - for (int s = 0; s < opt_strand; s++) - { - struct searchinfo_s * si = s ? si_minus+t : si_plus+t; - - /* mask query */ - if (opt_qmask == MASK_DUST) - { - dust(si->qsequence, si->qseqlen); - } - else if ((opt_qmask == MASK_SOFT) && (opt_hardmask)) - { - hardmask(si->qsequence, si->qseqlen); - } - - /* perform search */ - search_exact_onequery(si); - } - - struct hit * hits; - int hit_count; - - search_joinhits(si_plus + t, - opt_strand > 1 ? si_minus + t : 0, - & hits, - & hit_count); - - search_exact_output_results(hit_count, - hits, - si_plus[t].query_head, - si_plus[t].qseqlen, - si_plus[t].qsequence, - opt_strand > 1 ? si_minus[t].qsequence : 0); - - /* free memory for alignment strings */ - for(int i=0; iquery_head_len = query_head_len; - si->qseqlen = qseqlen; - si->query_no = query_no; - si->qsize = qsize; - si->strand = s; - - /* allocate more memory for header and sequence, if necessary */ - - if (si->query_head_len + 1 > si->query_head_alloc) - { - si->query_head_alloc = si->query_head_len + 2001; - si->query_head = (char*) - xrealloc(si->query_head, (size_t)(si->query_head_alloc)); - } - - if (si->qseqlen + 1 > si->seq_alloc) - { - si->seq_alloc = si->qseqlen + 2001; - si->qsequence = (char*) - xrealloc(si->qsequence, (size_t)(si->seq_alloc)); - } - } - - /* plus strand: copy header and sequence */ - strcpy(si_plus[t].query_head, qhead); - strcpy(si_plus[t].qsequence, qseq); - - /* get progress as amount of input file read */ - unsigned long progress = fasta_get_position(query_fasta_h); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* let other threads read input */ - pthread_mutex_unlock(&mutex_input); -#endif - /* minus strand: copy header and reverse complementary sequence */ - if (opt_strand > 1) - { - strcpy(si_minus[t].query_head, si_plus[t].query_head); - reverse_complement(si_minus[t].qsequence, - si_plus[t].qsequence, - si_plus[t].qseqlen); - } - - int match = search_exact_query(t); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* lock mutex for update of global data and output */ - pthread_mutex_lock(&mutex_output); -#endif - /* update stats */ - queries++; - - if (match) - qmatches++; - - /* show progress */ - progress_update(progress); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_output); -#endif - } - else - { -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_unlock(&mutex_input); -#endif - break; - } - } -} - -void search_exact_thread_init(struct searchinfo_s * si) -{ - /* thread specific initialiation */ - si->uh = 0; - si->kmers = 0; - si->m = 0; - si->hits = (struct hit *) xmalloc - (sizeof(struct hit) * (tophits) * opt_strand); - si->qsize = 1; - si->query_head_alloc = 0; - si->query_head = 0; - si->seq_alloc = 0; - si->qsequence = 0; - si->nw = 0; - si->s = 0; -} - -void search_exact_thread_exit(struct searchinfo_s * si) -{ - /* thread specific clean up */ - free(si->hits); - if (si->query_head) - free(si->query_head); - if (si->qsequence) - free(si->qsequence); -} - -void * search_exact_thread_worker(void * vp) -{ - long t = (intptr_t) vp; - search_exact_thread_run(t); - return 0; -} - -void search_exact_thread_worker_run() -{ -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - /* initialize threads, start them, join them and return */ - - pthread_attr_init(&attr); - pthread_attr_setdetachstate(&attr, PTHREAD_CREATE_JOINABLE); - - /* init and create worker threads, put them into stand-by mode */ - for(int t=0; t 1) - si_minus = (struct searchinfo_s *) xmalloc(opt_threads * - sizeof(struct searchinfo_s)); - else - si_minus = 0; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread = (pthread_t *) xmalloc(opt_threads * sizeof(pthread_t)); - - /* init mutexes for input and output */ - pthread_mutex_init(&mutex_input, NULL); - pthread_mutex_init(&mutex_output, NULL); -#endif - progress_init("Searching", fasta_get_size(query_fasta_h)); - search_exact_thread_worker_run(); - progress_done(); -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - pthread_mutex_destroy(&mutex_output); - pthread_mutex_destroy(&mutex_input); - - free(pthread); -#endif - - free(si_plus); - if (si_minus) - free(si_minus); - - fasta_close(query_fasta_h); - - if (!opt_quiet) - fprintf(stderr, "Matching query sequences: %d of %d (%.2f%%)\n", - qmatches, queries, 100.0 * qmatches / queries); - - if (opt_log) - fprintf(fp_log, "Matching query sequences: %d of %d (%.2f%%)\n", - qmatches, queries, 100.0 * qmatches / queries); - - if (opt_dbmatched || opt_dbnotmatched) - { - for(long i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void search_exact(char * cmdline, char * progheader); diff --git a/source/vsearch_src/sha1.c b/source/vsearch_src/sha1.c deleted file mode 100755 index 9ffe49db..00000000 --- a/source/vsearch_src/sha1.c +++ /dev/null @@ -1,377 +0,0 @@ -/* Slightly modified for vsearch by Torbjorn Rognes */ - -/* -SHA-1 in C -By Steve Reid -100% Public Domain - ------------------ -Modified 7/98 -By James H. Brown -Still 100% Public Domain - -Corrected a problem which generated improper hash values on 16 bit machines -Routine SHA1Update changed from - void SHA1Update(SHA1_CTX* context, unsigned char* data, unsigned int -len) -to - void SHA1Update(SHA1_CTX* context, unsigned char* data, unsigned -long len) - -The 'len' parameter was declared an int which works fine on 32 bit machines. -However, on 16 bit machines an int is too small for the shifts being done -against -it. This caused the hash function to generate incorrect values if len was -greater than 8191 (8K - 1) due to the 'len << 3' on line 3 of SHA1Update(). - -Since the file IO in main() reads 16K at a time, any file 8K or larger would -be guaranteed to generate the wrong hash (e.g. Test Vector #3, a million -"a"s). - -I also changed the declaration of variables i & j in SHA1Update to -unsigned long from unsigned int for the same reason. - -These changes should make no difference to any 32 bit implementations since -an -int and a long are the same size in those environments. - --- -I also corrected a few compiler warnings generated by Borland C. -1. Added #include for exit() prototype -2. Removed unused variable 'j' in SHA1Final -3. Changed exit(0) to return(0) at end of main. - -ALL changes I made can be located by searching for comments containing 'JHB' ------------------ -Modified 8/98 -By Steve Reid -Still 100% public domain - -1- Removed #include and used return() instead of exit() -2- Fixed overwriting of finalcount in SHA1Final() (discovered by Chris Hall) -3- Changed email address from steve@edmweb.com to sreid@sea-to-sky.net - ------------------ -Modified 4/01 -By Saul Kravitz -Still 100% PD -Modified to run on Compaq Alpha hardware. - ------------------ -Modified 07/2002 -By Ralph Giles -Still 100% public domain -modified for use with stdint types, autoconf -code cleanup, removed attribution comments -switched SHA1Final() argument order for consistency -use SHA1_ prefix for public api -move public api to sha1.h -*/ - -/* -Test Vectors (from FIPS PUB 180-1) -"abc" - A9993E36 4706816A BA3E2571 7850C26C 9CD0D89D -"abcdbcdecdefdefgefghfghighijhijkijkljklmklmnlmnomnopnopq" - 84983E44 1C3BD26E BAAE4AA1 F95129E5 E54670F1 -A million repetitions of "a" - 34AA973C D4C4DAA4 F61EEB2B DBAD2731 6534016F -*/ - -/* #define SHA1HANDSOFF */ - -#ifdef HAVE_CONFIG_H -#include "config.h" -#endif - -#include -#include - -#include -#include "sha1.h" - -void SHA1_Transform(uint32_t state[5], const uint8_t buffer[64]); - -#define rol(value, bits) (((value) << (bits)) | ((value) >> (32 - (bits)))) - -/* blk0() and blk() perform the initial expand. */ -/* I got the idea of expanding during the round function from SSLeay */ -/* FIXME: can we do this in an endian-proof way? */ -#ifdef WORDS_BIGENDIAN -#define blk0(i) block->l[i] -#else -#define blk0(i) (block->l[i] = (rol(block->l[i],24)&0xFF00FF00) \ - |(rol(block->l[i],8)&0x00FF00FF)) -#endif -#define blk(i) (block->l[i&15] = rol(block->l[(i+13)&15]^block->l[(i+8)&15] \ - ^block->l[(i+2)&15]^block->l[i&15],1)) - -/* (R0+R1), R2, R3, R4 are the different operations used in SHA1 */ -#define R0(v,w,x,y,z,i) z+=((w&(x^y))^y)+blk0(i)+0x5A827999+rol(v,5);w=rol(w,30); -#define R1(v,w,x,y,z,i) z+=((w&(x^y))^y)+blk(i)+0x5A827999+rol(v,5);w=rol(w,30); -#define R2(v,w,x,y,z,i) z+=(w^x^y)+blk(i)+0x6ED9EBA1+rol(v,5);w=rol(w,30); -#define R3(v,w,x,y,z,i) z+=(((w|x)&y)|(w&x))+blk(i)+0x8F1BBCDC+rol(v,5);w=rol(w,30); -#define R4(v,w,x,y,z,i) z+=(w^x^y)+blk(i)+0xCA62C1D6+rol(v,5);w=rol(w,30); - - -#ifdef VERBOSE /* SAK */ -void SHAPrintContext(SHA1_CTX *context, char *msg){ - printf("%s (%d,%d) %x %x %x %x %x\n", - msg, - context->count[0], context->count[1], - context->state[0], - context->state[1], - context->state[2], - context->state[3], - context->state[4]); -} -#endif /* VERBOSE */ - -/* Hash a single 512-bit block. This is the core of the algorithm. */ -void SHA1_Transform(uint32_t state[5], const uint8_t buffer[64]) -{ - uint32_t a, b, c, d, e; - typedef union { - uint8_t c[64]; - uint32_t l[16]; - } CHAR64LONG16; - CHAR64LONG16* block; - -#ifdef SHA1HANDSOFF - static uint8_t workspace[64]; - block = (CHAR64LONG16*)workspace; - memcpy(block, buffer, 64); -#else - block = (CHAR64LONG16*)buffer; -#endif - - /* Copy context->state[] to working vars */ - a = state[0]; - b = state[1]; - c = state[2]; - d = state[3]; - e = state[4]; - - /* 4 rounds of 20 operations each. Loop unrolled. */ - R0(a,b,c,d,e, 0); R0(e,a,b,c,d, 1); R0(d,e,a,b,c, 2); R0(c,d,e,a,b, 3); - R0(b,c,d,e,a, 4); R0(a,b,c,d,e, 5); R0(e,a,b,c,d, 6); R0(d,e,a,b,c, 7); - R0(c,d,e,a,b, 8); R0(b,c,d,e,a, 9); R0(a,b,c,d,e,10); R0(e,a,b,c,d,11); - R0(d,e,a,b,c,12); R0(c,d,e,a,b,13); R0(b,c,d,e,a,14); R0(a,b,c,d,e,15); - R1(e,a,b,c,d,16); R1(d,e,a,b,c,17); R1(c,d,e,a,b,18); R1(b,c,d,e,a,19); - R2(a,b,c,d,e,20); R2(e,a,b,c,d,21); R2(d,e,a,b,c,22); R2(c,d,e,a,b,23); - R2(b,c,d,e,a,24); R2(a,b,c,d,e,25); R2(e,a,b,c,d,26); R2(d,e,a,b,c,27); - R2(c,d,e,a,b,28); R2(b,c,d,e,a,29); R2(a,b,c,d,e,30); R2(e,a,b,c,d,31); - R2(d,e,a,b,c,32); R2(c,d,e,a,b,33); R2(b,c,d,e,a,34); R2(a,b,c,d,e,35); - R2(e,a,b,c,d,36); R2(d,e,a,b,c,37); R2(c,d,e,a,b,38); R2(b,c,d,e,a,39); - R3(a,b,c,d,e,40); R3(e,a,b,c,d,41); R3(d,e,a,b,c,42); R3(c,d,e,a,b,43); - R3(b,c,d,e,a,44); R3(a,b,c,d,e,45); R3(e,a,b,c,d,46); R3(d,e,a,b,c,47); - R3(c,d,e,a,b,48); R3(b,c,d,e,a,49); R3(a,b,c,d,e,50); R3(e,a,b,c,d,51); - R3(d,e,a,b,c,52); R3(c,d,e,a,b,53); R3(b,c,d,e,a,54); R3(a,b,c,d,e,55); - R3(e,a,b,c,d,56); R3(d,e,a,b,c,57); R3(c,d,e,a,b,58); R3(b,c,d,e,a,59); - R4(a,b,c,d,e,60); R4(e,a,b,c,d,61); R4(d,e,a,b,c,62); R4(c,d,e,a,b,63); - R4(b,c,d,e,a,64); R4(a,b,c,d,e,65); R4(e,a,b,c,d,66); R4(d,e,a,b,c,67); - R4(c,d,e,a,b,68); R4(b,c,d,e,a,69); R4(a,b,c,d,e,70); R4(e,a,b,c,d,71); - R4(d,e,a,b,c,72); R4(c,d,e,a,b,73); R4(b,c,d,e,a,74); R4(a,b,c,d,e,75); - R4(e,a,b,c,d,76); R4(d,e,a,b,c,77); R4(c,d,e,a,b,78); R4(b,c,d,e,a,79); - - /* Add the working vars back into context.state[] */ - state[0] += a; - state[1] += b; - state[2] += c; - state[3] += d; - state[4] += e; - - /* Wipe variables */ - a = b = c = d = e = 0; -} - - -/* SHA1Init - Initialize new context */ -void SHA1_Init(SHA1_CTX* context) -{ - /* SHA1 initialization constants */ - context->state[0] = 0x67452301; - context->state[1] = 0xEFCDAB89; - context->state[2] = 0x98BADCFE; - context->state[3] = 0x10325476; - context->state[4] = 0xC3D2E1F0; - context->count[0] = context->count[1] = 0; -} - - -/* Run your data through this. */ -void SHA1_Update(SHA1_CTX* context, const uint8_t* data, const size_t len) -{ - size_t i, j; - -#ifdef VERBOSE - SHAPrintContext(context, "before"); -#endif - - j = (context->count[0] >> 3) & 63; - if ((context->count[0] += len << 3) < (len << 3)) context->count[1]++; - context->count[1] += (len >> 29); - if ((j + len) > 63) { - memcpy(&context->buffer[j], data, (i = 64-j)); - SHA1_Transform(context->state, context->buffer); - for ( ; i + 63 < len; i += 64) { - SHA1_Transform(context->state, data + i); - } - j = 0; - } - else i = 0; - memcpy(&context->buffer[j], &data[i], len - i); - -#ifdef VERBOSE - SHAPrintContext(context, "after "); -#endif -} - - -/* Add padding and return the message digest. */ -void SHA1_Final(SHA1_CTX* context, uint8_t digest[SHA1_DIGEST_SIZE]) -{ - uint32_t i; - uint8_t finalcount[8]; - - for (i = 0; i < 8; i++) { - finalcount[i] = (unsigned char)((context->count[(i >= 4 ? 0 : 1)] - >> ((3-(i & 3)) * 8) ) & 255); /* Endian independent */ - } - SHA1_Update(context, (uint8_t *)"\200", 1); - while ((context->count[0] & 504) != 448) { - SHA1_Update(context, (uint8_t *)"\0", 1); - } - SHA1_Update(context, finalcount, 8); /* Should cause a SHA1_Transform() */ - for (i = 0; i < SHA1_DIGEST_SIZE; i++) { - digest[i] = (uint8_t) - ((context->state[i>>2] >> ((3-(i & 3)) * 8) ) & 255); - } - - /* Wipe variables */ - i = 0; - memset(context->buffer, 0, 64); - memset(context->state, 0, 20); - memset(context->count, 0, 8); - memset(finalcount, 0, 8); /* SWR */ - -#ifdef SHA1HANDSOFF /* make SHA1Transform overwrite its own static vars */ - SHA1_Transform(context->state, context->buffer); -#endif -} - -/*************************************************************/ - -#if 0 -int main(int argc, char** argv) -{ -int i, j; -SHA1_CTX context; -unsigned char digest[SHA1_DIGEST_SIZE], buffer[16384]; -FILE* file; - - if (argc > 2) { - puts("Public domain SHA-1 implementation - by Steve Reid "); - puts("Modified for 16 bit environments 7/98 - by James H. Brown "); /* JHB */ - puts("Produces the SHA-1 hash of a file, or stdin if no file is specified."); - return(0); - } - if (argc < 2) { - file = stdin; - } - else { - if (!(file = fopen(argv[1], "rb"))) { - fputs("Unable to open file.", stderr); - return(-1); - } - } - SHA1_Init(&context); - while (!feof(file)) { /* note: what if ferror(file) */ - i = fread(buffer, 1, 16384, file); - SHA1_Update(&context, buffer, i); - } - SHA1_Final(&context, digest); - fclose(file); - for (i = 0; i < SHA1_DIGEST_SIZE/4; i++) { - for (j = 0; j < 4; j++) { - printf("%02X", digest[i*4+j]); - } - putchar(' '); - } - putchar('\n'); - return(0); /* JHB */ -} -#endif - -/* self test */ - -#ifdef TEST - -static char *test_data[] = { - "abc", - "abcdbcdecdefdefgefghfghighijhijkijkljklmklmnlmnomnopnopq", - "A million repetitions of 'a'"}; -static char *test_results[] = { - "A9993E36 4706816A BA3E2571 7850C26C 9CD0D89D", - "84983E44 1C3BD26E BAAE4AA1 F95129E5 E54670F1", - "34AA973C D4C4DAA4 F61EEB2B DBAD2731 6534016F"}; - - -void digest_to_hex(const uint8_t digest[SHA1_DIGEST_SIZE], char *output) -{ - int i,j; - char *c = output; - - for (i = 0; i < SHA1_DIGEST_SIZE/4; i++) { - for (j = 0; j < 4; j++) { - sprintf(c,"%02X", digest[i*4+j]); - c += 2; - } - sprintf(c, " "); - c += 1; - } - *(c - 1) = '\0'; -} - -int main(int argc, char** argv) -{ - int k; - SHA1_CTX context; - uint8_t digest[20]; - char output[80]; - - fprintf(stdout, "verifying SHA-1 implementation... "); - - for (k = 0; k < 2; k++){ - SHA1_Init(&context); - SHA1_Update(&context, (uint8_t*)test_data[k], strlen(test_data[k])); - SHA1_Final(&context, digest); - digest_to_hex(digest, output); - - if (strcmp(output, test_results[k])) { - fprintf(stdout, "FAIL\n"); - fprintf(stderr,"* hash of \"%s\" incorrect:\n", test_data[k]); - fprintf(stderr,"\t%s returned\n", output); - fprintf(stderr,"\t%s is correct\n", test_results[k]); - return (1); - } - } - /* million 'a' vector we feed separately */ - SHA1_Init(&context); - for (k = 0; k < 1000000; k++) - SHA1_Update(&context, (uint8_t*)"a", 1); - SHA1_Final(&context, digest); - digest_to_hex(digest, output); - if (strcmp(output, test_results[2])) { - fprintf(stdout, "FAIL\n"); - fprintf(stderr,"* hash of \"%s\" incorrect:\n", test_data[2]); - fprintf(stderr,"\t%s returned\n", output); - fprintf(stderr,"\t%s is correct\n", test_results[2]); - return (1); - } - - /* success */ - fprintf(stdout, "ok\n"); - return(0); -} -#endif /* TEST */ diff --git a/source/vsearch_src/sha1.h b/source/vsearch_src/sha1.h deleted file mode 100755 index e57a8c3e..00000000 --- a/source/vsearch_src/sha1.h +++ /dev/null @@ -1,27 +0,0 @@ -/* public api for steve reid's public domain SHA-1 implementation */ -/* this file is in the public domain */ - -#ifndef __SHA1_H -#define __SHA1_H - -#ifdef __cplusplus -extern "C" { -#endif - -typedef struct { - uint32_t state[5]; - uint32_t count[2]; - uint8_t buffer[64]; -} SHA1_CTX; - -#define SHA1_DIGEST_SIZE 20 - -void SHA1_Init(SHA1_CTX* context); -void SHA1_Update(SHA1_CTX* context, const uint8_t* data, const size_t len); -void SHA1_Final(SHA1_CTX* context, uint8_t digest[SHA1_DIGEST_SIZE]); - -#ifdef __cplusplus -} -#endif - -#endif /* __SHA1_H */ diff --git a/source/vsearch_src/showalign.cc b/source/vsearch_src/showalign.cc deleted file mode 100755 index 2e977923..00000000 --- a/source/vsearch_src/showalign.cc +++ /dev/null @@ -1,306 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2016, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static long line_pos; - -static char * q_seq; -static char * d_seq; - -static long q_start; -static long d_start; - -static long q_pos; -static long d_pos; - -static long q_strand; - -static long alignlen; - -static char * q_line; -static char * a_line; -static char * d_line; - -static FILE * out; - -static int poswidth = 3; -static int headwidth = 5; - -static const char * q_name; -static const char * d_name; - -static long q_len; -static long d_len; - -inline int nt_identical(char a, char b) -{ - if (chrmap_4bit[(int)a] == chrmap_4bit[(int)b]) - return 1; - else - return 0; -} - -inline void putop(char c, long len) -{ - long delta = q_strand ? -1 : +1; - - long count = len; - while(count) - { - if (line_pos == 0) - { - q_start = q_pos; - d_start = d_pos; - } - - char qs; - char ds; - - switch(c) - { - case 'M': - qs = q_strand ? chrmap_complement[(int)(q_seq[q_pos])] : q_seq[q_pos]; - ds = d_seq[d_pos]; - q_pos += delta; - d_pos += 1; - q_line[line_pos] = qs; - a_line[line_pos] = nt_identical(qs, ds) ? '|' : ' '; - d_line[line_pos] = ds; - line_pos++; - break; - - case 'D': - qs = q_strand ? chrmap_complement[(int)(q_seq[q_pos])] : q_seq[q_pos]; - q_pos += delta; - q_line[line_pos] = qs; - a_line[line_pos] = ' '; - d_line[line_pos] = '-'; - line_pos++; - break; - - case 'I': - ds = d_seq[d_pos]; - d_pos += 1; - q_line[line_pos] = '-'; - a_line[line_pos] = ' '; - d_line[line_pos] = ds; - line_pos++; - break; - } - - if ((line_pos == alignlen) || ((c == 0) && (line_pos > 0))) - { - q_line[line_pos] = 0; - a_line[line_pos] = 0; - d_line[line_pos] = 0; - - long q1 = q_start + 1; - if (q1 > q_len) - q1 = q_len; - - long q2 = q_strand ? q_pos +2 : q_pos; - - long d1 = d_start + 1; - if (d1 > d_len) - d1 = d_len; - - long d2 = d_pos; - - fprintf(out, "\n"); - fprintf(out, "%*s %*ld %c %s %ld\n", headwidth, q_name, poswidth, - q1, q_strand ? '-' : '+', q_line, q2); - fprintf(out, "%*s %*s %s\n", headwidth, "", poswidth, - "", a_line); - fprintf(out, "%*s %*ld %c %s %ld\n", headwidth, d_name, poswidth, - d1, '+', d_line, d2); - - line_pos = 0; - } - count--; - } -} - -void align_show(FILE * f, - char * seq1, - long seq1len, - long seq1off, - const char * seq1name, - char * seq2, - long seq2len, - long seq2off, - const char * seq2name, - char * cigar, - long cigarlen, - int numwidth, - int namewidth, - int alignwidth, - int strand) -{ - out = f; - - q_seq = seq1; - q_len = seq1len; - q_name = seq1name; - q_strand = strand; - - d_seq = seq2; - d_len = seq2len; - d_name = seq2name; - - char * p = cigar; - char * e = p + cigarlen; - - poswidth = numwidth; - headwidth = namewidth; - alignlen = alignwidth; - - q_line = (char*) xmalloc(alignwidth+1); - a_line = (char*) xmalloc(alignwidth+1); - d_line = (char*) xmalloc(alignwidth+1); - - q_pos = strand ? seq1len - 1 - seq1off : seq1off; - d_pos = seq2off; - - line_pos = 0; - - while(p < e) - { - long len; - int n; - if (!sscanf(p, "%ld%n", & len, & n)) - { - n = 0; - len = 1; - } - p += n; - char op = *p++; - putop(op, len); - } - - putop(0, 1); - - free(q_line); - free(a_line); - free(d_line); -} - -char * align_getrow(char * seq, char * cigar, int alen, int origin) -{ - char * row = (char*) xmalloc(alen+1); - char * r = row; - char * p = cigar; - char * s = seq; - - while(*p) - { - long len; - int n; - if (!sscanf(p, "%ld%n", & len, & n)) - { - n = 0; - len = 1; - } - p += n; - char op = *p++; - - if ((op == 'M') || - ((op == 'D') && (origin == 0)) || - ((op == 'I') && (origin == 1))) - { - strncpy(r, s, len); - r += len; - s += len; - } - else - { - /* insert len gap symbols */ - for(long i = 0; i < len; i++) - *r++ = '-'; - } - } - - *r = 0; - return row; -} - -void align_fprint_uncompressed_alignment(FILE * f, char * cigar) -{ - char * p = cigar; - while(*p) - { - if (*p > '9') - fprintf(f, "%c", *p++); - else - { - int n = 0; - char c = 0; - int x = 0; - if (sscanf(p, "%d%c%n", &n, &c, &x) == 2) - { - for(int i = 0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -char * align_getrow(char * seq, char * cigar, int alignlen, int origin); - -void align_fprint_uncompressed_alignment(FILE * f, char * cigar); - -void align_show(FILE * f, - char * seq1, - long seq1len, - long seq1off, - const char * seq1name, - char * seq2, - long seq2len, - long seq2off, - const char * seq2name, - char * cigar, - long cigarlen, - int numwidth, - int namewidth, - int alignwidth, - int strand); diff --git a/source/vsearch_src/shuffle.cc b/source/vsearch_src/shuffle.cc deleted file mode 100755 index 37ade2ce..00000000 --- a/source/vsearch_src/shuffle.cc +++ /dev/null @@ -1,113 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -void shuffle() -{ - FILE * fp_output = fopen(opt_output, "w"); - if (!fp_output) - fatal("Unable to open shuffle output file for writing"); - - db_read(opt_shuffle, 0); - show_rusage(); - - int dbsequencecount = db_getsequencecount(); - int * deck = (int*) xmalloc(dbsequencecount * sizeof(int)); - - for(int i=0; i0; i--) - { - /* generate a random number j in the range 0 to i, inclusive */ - int j = random_int(i+1); - - /* exchange elements i and j */ - int t = deck[i]; - deck[i] = deck[j]; - deck[j] = t; - - passed++; - progress_update(i); - } - progress_done(); - show_rusage(); - - passed = MIN(dbsequencecount, opt_topn); - - progress_init("Writing output", passed); - for(int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void shuffle(); diff --git a/source/vsearch_src/sortbylength.cc b/source/vsearch_src/sortbylength.cc deleted file mode 100755 index 3366457d..00000000 --- a/source/vsearch_src/sortbylength.cc +++ /dev/null @@ -1,165 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static struct sortinfo_s -{ - unsigned int length; - unsigned int size; - unsigned int seqno; -} * sortinfo; - -int sortbylength_compare(const void * a, const void * b) -{ - struct sortinfo_s * x = (struct sortinfo_s *) a; - struct sortinfo_s * y = (struct sortinfo_s *) b; - - /* longest first, then most abundant, then by label, otherwise keep order */ - - if (x->length < y->length) - return +1; - else if (x->length > y->length) - return -1; - else - if (x->size < y->size) - return +1; - else if (x->size > y->size) - return -1; - else - { - int r = strcmp(db_getheader(x->seqno), db_getheader(y->seqno)); - if (r != 0) - return r; - else - { - if (x->seqno < y->seqno) - return -1; - else if (x->seqno > y->seqno) - return +1; - else - return 0; - } - } -} - -void sortbylength() -{ - FILE * fp_output = fopen(opt_output, "w"); - if (!fp_output) - fatal("Unable to open sortbylength output file for writing"); - - db_read(opt_sortbylength, 0); - show_rusage(); - - int dbsequencecount = db_getsequencecount(); - sortinfo = (struct sortinfo_s *) xmalloc(dbsequencecount * sizeof(sortinfo_s)); - - int passed = 0; - - progress_init("Getting lengths", dbsequencecount); - for(int i=0; i 0) - { - if (passed % 2) - median = sortinfo[(passed-1)/2].length; - else - median = (sortinfo[(passed/2)-1].length + - sortinfo[passed/2].length) / 2.0; - } - - if (!opt_quiet) - fprintf(stderr, "Median length: %.0f\n", median); - - if (opt_log) - fprintf(fp_log, "Median length: %.0f\n", median); - - show_rusage(); - - passed = MIN(passed, opt_topn); - - progress_init("Writing output", passed); - for(int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void sortbylength(); diff --git a/source/vsearch_src/sortbysize.cc b/source/vsearch_src/sortbysize.cc deleted file mode 100755 index 279db2d4..00000000 --- a/source/vsearch_src/sortbysize.cc +++ /dev/null @@ -1,168 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static struct sortinfo_s -{ - unsigned int size; - unsigned int seqno; -} * sortinfo; - -int sortbysize_compare(const void * a, const void * b) -{ - struct sortinfo_s * x = (struct sortinfo_s *) a; - struct sortinfo_s * y = (struct sortinfo_s *) b; - - /* highest abundance first, then by label, otherwise keep order */ - - if (x->size < y->size) - return +1; - else if (x->size > y->size) - return -1; - else - { - int r = strcmp(db_getheader(x->seqno), db_getheader(y->seqno)); - if (r != 0) - return r; - else - { - if (x->seqno < y->seqno) - return -1; - else if (x->seqno > y->seqno) - return +1; - else - return 0; - } - } -} - -void sortbysize() -{ - FILE * fp_output = fopen(opt_output, "w"); - if (!fp_output) - fatal("Unable to open sortbysize output file for writing"); - - db_read(opt_sortbysize, 0); - - show_rusage(); - - int dbsequencecount = db_getsequencecount(); - - progress_init("Getting sizes", dbsequencecount); - - sortinfo = (struct sortinfo_s*) xmalloc(dbsequencecount * sizeof(sortinfo_s)); - - int passed = 0; - - for(int i=0; i= opt_minsize) && (size <= opt_maxsize)) - { - sortinfo[passed].seqno = i; - sortinfo[passed].size = (unsigned int) size; - passed++; - } - progress_update(i); - } - - progress_done(); - - show_rusage(); - - progress_init("Sorting", 100); - qsort(sortinfo, passed, sizeof(sortinfo_s), sortbysize_compare); - progress_done(); - - double median = 0.0; - if (passed > 0) - { - if (passed % 2) - median = sortinfo[(passed-1)/2].size; - else - median = (sortinfo[(passed/2)-1].size + - sortinfo[passed/2].size) / 2.0; - } - - if (! opt_quiet) - fprintf(stderr, "Median abundance: %.0f\n", median); - - if (opt_log) - fprintf(fp_log, "Median abundance: %.0f\n", median); - - show_rusage(); - - passed = MIN(passed, opt_topn); - - progress_init("Writing output", passed); - for(int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void sortbysize(); diff --git a/source/vsearch_src/subsample.cc b/source/vsearch_src/subsample.cc deleted file mode 100755 index cb15f781..00000000 --- a/source/vsearch_src/subsample.cc +++ /dev/null @@ -1,193 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -void subsample() -{ - FILE * fp_fastaout = 0; - FILE * fp_fastqout = 0; - - if (opt_fastaout) - { - fp_fastaout = fopen(opt_fastaout, "w"); - if (!fp_fastaout) - fatal("Unable to open fasta output file for writing"); - } - - if (opt_fastqout) - { - fp_fastqout = fopen(opt_fastqout, "w"); - if (!fp_fastqout) - fatal("Unable to open fastq output file for writing"); - } - - db_read(opt_fastx_subsample, 0); - show_rusage(); - - if (fp_fastqout && ! db_is_fastq()) - fatal("Cannot write FASTQ output with a FASTA input file, lacking quality scores"); - - int dbsequencecount = db_getsequencecount(); - - unsigned long mass_total = 0; - - if (!opt_sizein) - mass_total = dbsequencecount; - else - for(int i=0; i mass_total) - fatal("Cannot subsample more reads than in the original sample"); - - unsigned long x = n; /* number of reads left */ - int a = 0; /* amplicon number */ - unsigned long r = 0; /* read being checked */ - unsigned long m = 0; /* accumulated mass */ - - unsigned long mass = /* mass of current amplicon */ - opt_sizein ? db_getabundance(0) : 1; - - progress_init("Subsampling", mass_total); - while (x > 0) - { - unsigned long random = random_ulong(mass_total - r); - - if (random < x) - { - /* selected read r from amplicon a */ - abundance[a]++; - x--; - } - - r++; - m++; - if (m >= mass) - { - /* next amplicon */ - a++; - mass = opt_sizein ? db_getabundance(a) : 1; - m = 0; - } - progress_update(r); - } - progress_done(); - - int samples = 0; - progress_init("Writing output", dbsequencecount); - for(int i=0; i0) - { - samples++; - - if (opt_fastaout) - fasta_print_relabel(fp_fastaout, - db_getsequence(i), - db_getsequencelen(i), - db_getheader(i), - db_getheaderlen(i), - abundance[i], - samples); - - if (opt_fastqout) - fastq_print_relabel(fp_fastqout, - db_getsequence(i), - db_getsequencelen(i), - db_getheader(i), - db_getheaderlen(i), - db_getquality(i), - abundance[i], - samples); - } - progress_update(i); - } - progress_done(); - - free(abundance); - - fprintf(stderr, "Subsampled %lu reads from %d amplicons\n", n, samples); - - db_free(); - - if (opt_fastaout) - fclose(fp_fastaout); - - if (opt_fastqout) - fclose(fp_fastqout); -} diff --git a/source/vsearch_src/subsample.h b/source/vsearch_src/subsample.h deleted file mode 100755 index ae5e044c..00000000 --- a/source/vsearch_src/subsample.h +++ /dev/null @@ -1,61 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -void subsample(); diff --git a/source/vsearch_src/unique.cc b/source/vsearch_src/unique.cc deleted file mode 100755 index 76fd45f0..00000000 --- a/source/vsearch_src/unique.cc +++ /dev/null @@ -1,343 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* - Find the unique kmers or words in a given sequence. - Unique is now defined as all different words occuring at least once. - Earlier it was defined as those words occuring exactly once, but - that caused a problem when searching for sequences with many repeats. -*/ - -#define HASH CityHash64 - -struct bucket_s -{ - unsigned int kmer; - unsigned int count; -}; - -struct uhandle_s -{ - struct bucket_s * hash; - unsigned int * list; - unsigned int hash_mask; - int size; - int alloc; - - unsigned long bitmap_size; - unsigned long * bitmap; -}; - -struct uhandle_s * unique_init() -{ - uhandle_s * uh = (struct uhandle_s *) xmalloc(sizeof(struct uhandle_s)); - - uh->alloc = 2048; - uh->size = 0; - uh->hash_mask = uh->alloc - 1; - uh->hash = (struct bucket_s *) xmalloc(sizeof(struct bucket_s) * uh->alloc); - uh->list = (unsigned int *) xmalloc(sizeof(unsigned int) * uh->alloc); - - uh->bitmap_size = 0; - uh->bitmap = 0; - - return uh; -} - -void unique_exit(struct uhandle_s * uh) -{ - if (uh->bitmap) - free(uh->bitmap); - if (uh->hash) - free(uh->hash); - if (uh->list) - free(uh->list); - free(uh); -} - -int unique_compare(const void * a, const void * b) -{ - unsigned int * x = (unsigned int*) a; - unsigned int * y = (unsigned int*) b; - - if (xy) - return +1; - else - return 0; -} - - -void unique_count_bitmap(struct uhandle_s * uh, - int k, - int seqlen, - char * seq, - unsigned int * listlen, - unsigned int * * list, - int seqmask) -{ - /* if necessary, reallocate list of unique kmers */ - - if (uh->alloc < seqlen) - { - while (uh->alloc < seqlen) - uh->alloc *= 2; - uh->list = (unsigned int *) - xrealloc(uh->list, sizeof(unsigned int) * uh->alloc); - } - - unsigned long size = 1UL << (k << 1UL); - - /* reallocate bitmap arrays if necessary */ - - if (uh->bitmap_size < size) - { - uh->bitmap = (unsigned long *) xrealloc(uh->bitmap, size >> 3UL); - uh->bitmap_size = size; - } - - memset(uh->bitmap, 0, size >> 3UL); - - unsigned long bad = 0; - unsigned long kmer = 0; - unsigned long mask = size - 1UL; - char * s = seq; - char * e1 = s + k-1; - char * e2 = s + seqlen; - if (e2 < e1) - e1 = e2; - - unsigned int * maskmap = (seqmask != MASK_NONE) ? - chrmap_mask_lower : chrmap_mask_ambig; - - while (s < e1) - { - bad <<= 2UL; - bad |= maskmap[(int)(*s)]; - - kmer <<= 2UL; - kmer |= chrmap_2bit[(int)(*s++)]; - } - - int unique = 0; - - while (s < e2) - { - bad <<= 2UL; - bad |= maskmap[(int)(*s)]; - bad &= mask; - - kmer <<= 2UL; - kmer |= chrmap_2bit[(int)(*s++)]; - kmer &= mask; - - if (!bad) - { - unsigned long x = kmer >> 6UL; - unsigned long y = 1UL << (kmer & 63UL); - if (!(uh->bitmap[x] & y)) - { - /* not seen before */ - uh->list[unique++] = kmer; - uh->bitmap[x] |= y; - } - } - } - - *listlen = unique; - *list = uh->list; -} - -void unique_count_hash(struct uhandle_s * uh, - int k, - int seqlen, - char * seq, - unsigned int * listlen, - unsigned int * * list, - int seqmask) -{ - /* if necessary, reallocate hash table and list of unique kmers */ - - if (uh->alloc < 2*seqlen) - { - while (uh->alloc < 2*seqlen) - uh->alloc *= 2; - uh->hash = (struct bucket_s *) - xrealloc(uh->hash, sizeof(struct bucket_s) * uh->alloc); - uh->list = (unsigned int *) - xrealloc(uh->list, sizeof(unsigned int) * uh->alloc); - } - - /* hashtable variant */ - - uh->size = 1; - while (uh->size < 2*seqlen) - uh->size *= 2; - uh->hash_mask = uh->size - 1; - - memset(uh->hash, 0, sizeof(struct bucket_s) * uh->size); - - unsigned long bad = 0; - unsigned long j; - unsigned int kmer = 0; - unsigned int mask = (1<<(2*k)) - 1; - char * s = seq; - char * e1 = s + k-1; - char * e2 = s + seqlen; - if (e2 < e1) - e1 = e2; - - unsigned int * maskmap = (seqmask != MASK_NONE) ? - chrmap_mask_lower : chrmap_mask_ambig; - - while (s < e1) - { - bad <<= 2UL; - bad |= maskmap[(int)(*s)]; - - kmer <<= 2; - kmer |= chrmap_2bit[(int)(*s++)]; - } - - unsigned long unique = 0; - - while (s < e2) - { - bad <<= 2UL; - bad |= maskmap[(int)(*s)]; - bad &= mask; - - kmer <<= 2; - kmer |= chrmap_2bit[(int)(*s++)]; - kmer &= mask; - - if (!bad) - { - /* find free appropriate bucket in hash */ - j = HASH((char*)&kmer, (k+3)/4) & uh->hash_mask; - while((uh->hash[j].count) && (uh->hash[j].kmer != kmer)) - j = (j + 1) & uh->hash_mask; - - if (!(uh->hash[j].count)) - { - /* not seen before */ - uh->list[unique++] = kmer; - uh->hash[j].kmer = kmer; - uh->hash[j].count = 1; - } - } - } - - *listlen = unique; - *list = uh->list; -} - -void unique_count(struct uhandle_s * uh, - int k, - int seqlen, - char * seq, - unsigned int * listlen, - unsigned int * * list, - int seqmask) -{ - if (k<10) - unique_count_bitmap(uh, k, seqlen, seq, listlen, list, seqmask); - else - unique_count_hash(uh, k, seqlen, seq, listlen, list, seqmask); -} - -int unique_count_shared(struct uhandle_s * uh, - int k, - int listlen, - unsigned int * list) -{ - /* counts how many of the kmers in list are present in the - (already computed) hash or bitmap */ - - int count = 0; - if (k<10) - { - for(int i = 0; i> 6UL; - unsigned long y = 1UL << (kmer & 63UL); - if (uh->bitmap[x] & y) - count++; - } - } - else - { - for(int i = 0; ihash_mask; - while((uh->hash[j].count) && (uh->hash[j].kmer != kmer)) - j = (j + 1) & uh->hash_mask; - if (uh->hash[j].count) - count++; - } - } - return count; -} diff --git a/source/vsearch_src/unique.h b/source/vsearch_src/unique.h deleted file mode 100755 index f9c8cebe..00000000 --- a/source/vsearch_src/unique.h +++ /dev/null @@ -1,79 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -struct bucket_s; -struct uhandle_s; - -struct uhandle_s * unique_init(); - -void unique_exit(struct uhandle_s * u); - -void unique_count(struct uhandle_s * uh, - int k, - int seqlen, - char * seq, - unsigned int * listlen, - unsigned int * * list, - int seqmask); - -int unique_count_shared(struct uhandle_s * uh, - int k, - int listlen, - unsigned int * list); diff --git a/source/vsearch_src/userfields.cc b/source/vsearch_src/userfields.cc deleted file mode 100755 index 6d722ff3..00000000 --- a/source/vsearch_src/userfields.cc +++ /dev/null @@ -1,165 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static const char * userfields_names[] = - { - "query", // 0 - "target", // 1 - "evalue", // 2 - "id", // 3 - "pctpv", - "pctgaps", - "pairs", - "gaps", - "qlo", - "qhi", - "tlo", - "thi", - "pv", - "ql", - "tl", - "qs", - "ts", - "alnlen", - "opens", - "exts", - "raw", - "bits", - "aln", - "caln", - "qstrand", - "tstrand", - "qrow", - "trow", - "qframe", - "tframe", - "mism", - "ids", - "qcov", - "tcov", // 33 - "id0", - "id1", - "id2", - "id3", - "id4", // 38 - "qilo", // 39 - "qihi", - "tilo", - "tihi", // 42 - 0 - }; - -int * userfields_requested = 0; -int userfields_requested_count = 0; - -int parse_userfields_arg(char * arg) -{ - // Parses the userfields option argument, e.g. query+target+id+alnlen+mism - // and returns 1 if it is ok or 0 if not. - - char * p = arg; - char * e = p + strlen(p); // pointer to end of string - - userfields_requested_count = 1; - while(p unrecognized field - return 0; // bad argument - - int i = (int)(((const char**)u) - userfields_names); - userfields_requested[fields++] = i; - - p = q; - - if (p == e) // reached end of argument - return 1; - - p++; - } -} diff --git a/source/vsearch_src/userfields.h b/source/vsearch_src/userfields.h deleted file mode 100755 index 62e876c1..00000000 --- a/source/vsearch_src/userfields.h +++ /dev/null @@ -1,64 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -extern int * userfields_requested; -extern int userfields_requested_count; - -int parse_userfields_arg(char * arg); diff --git a/source/vsearch_src/util.cc b/source/vsearch_src/util.cc deleted file mode 100755 index 00e1f9c1..00000000 --- a/source/vsearch_src/util.cc +++ /dev/null @@ -1,434 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -static const char * progress_prompt; -static unsigned long progress_next; -static unsigned long progress_size; -static unsigned long progress_chunk; -static const unsigned long progress_granularity = 200; - -void progress_init(const char * prompt, unsigned long size) -{ - if (! opt_quiet) - { - progress_prompt = prompt; - progress_size = size; - progress_chunk = size < progress_granularity ? - 1 : size / progress_granularity; - progress_next = 0; - fprintf(stderr, "%s %.0f%%", prompt, 0.0); - } -} - -void progress_update(unsigned long progress) -{ - if (! opt_quiet) - if (progress >= progress_next) - { - if (progress_size > 0) - fprintf(stderr, " \r%s %.0f%%", progress_prompt, - 100.0 * progress / progress_size); - else - fprintf(stderr, " \r%s ?%%", progress_prompt); - progress_next = progress + progress_chunk; - } -} - -void progress_done() -{ - if (! opt_quiet) - fprintf(stderr, " \r%s %.0f%%\n", progress_prompt, 100.0); -} - -long gcd(long a, long b) -{ - if (b == 0) - { - return a; - } - else - { - return gcd(b, a % b); - } -} - -void __attribute__((noreturn)) fatal(const char * msg) -{ - fprintf(stderr, "\n\n"); - fprintf(stderr, "Fatal error: %s\n", msg); - - if (opt_log) - { - fprintf(fp_log, "\n\n"); - fprintf(fp_log, "Fatal error: %s\n", msg); - } - - exit(EXIT_FAILURE); -} - -void __attribute__((noreturn)) fatal(const char * format, - const char * message) -{ - fprintf(stderr, "\n\n"); - fprintf(stderr, format, message); - fprintf(stderr, "\n"); - - if (opt_log) - { - fprintf(fp_log, "\n\n"); - fprintf(fp_log, format, message); - fprintf(fp_log, "\n"); - } - - exit(EXIT_FAILURE); -} - -void * xmalloc(size_t size) -{ - const size_t alignment = 16; - void * t = 0; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - if (posix_memalign(& t, alignment, size)) - fatal("Unable to allocate enough memory."); -#else - t = _aligned_malloc(size, alignment); -#endif - - if (!t) - fatal("Unable to allocate enough memory."); - return t; -} - -void * xrealloc(void *ptr, size_t size) -{ - if (size == 0) - size = 1; - void * t = realloc(ptr, size); - if (!t) - fatal("Unable to allocate enough memory."); - return t; -} - -char * xstrdup(const char *s) -{ - size_t len = strlen(s); - char * p = (char*) xmalloc(len+1); - return strcpy(p, s); -} - - -char * xstrchrnul(char *s, int c) -{ - char * r = strchr(s, c); - - if (r) - return r; - else - return (char *)s + strlen(s); -} - -unsigned long hash_cityhash64(char * s, unsigned long n) -{ - return CityHash64((const char*)s, n); -} - -long getusec(void) -{ - struct timeval tv; - -#if defined (_WIN32) - static const unsigned __int64 epoch = (uint64_t)(116444736000000000); - FILETIME file_time; - SYSTEMTIME system_time; - ULARGE_INTEGER ularge; - - GetSystemTime(&system_time); - if ((SystemTimeToFileTime(&system_time, &file_time)) == 0) { return 0; } //failed - ularge.LowPart = file_time.dwLowDateTime; - ularge.HighPart = file_time.dwHighDateTime; - - tv.tv_sec = (long) ((ularge.QuadPart - epoch) / 10000000L); - tv.tv_usec = (long) (system_time.wMilliseconds * 1000); - return tv.tv_sec; - - - -#else - if(gettimeofday(&tv,0) != 0) return 0; - return tv.tv_sec * 1000000 + tv.tv_usec; -#endif -} - -void show_rusage() -{ -#if 0 - struct rusage r_usage; - getrusage(RUSAGE_SELF, & r_usage); - - fprintf(stderr, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); - fprintf(stderr, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); - - fprintf(stderr, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); - - if (opt_log) - { - fprintf(fp_log, "Time: %.3fs (user)", r_usage.ru_utime.tv_sec * 1.0 + (double) r_usage.ru_utime.tv_usec * 1.0e-6); - fprintf(fp_log, " %.3fs (sys)", r_usage.ru_stime.tv_sec * 1.0 + r_usage.ru_stime.tv_usec * 1.0e-6); - - fprintf(fp_log, " Memory: %luMB\n", arch_get_memused() / 1024 / 1024); - } -#endif -} - -void reverse_complement(char * rc, char * seq, long len) -{ - /* Write the reverse complementary sequence to rc. - The memory for rc must be long enough for the rc of the sequence - (identical to the length of seq + 1. */ - - for(long i=0; i 0 - The random() function returns a random number in the range - 0 to 2147483647 (=2^31-1=RAND_MAX), inclusive. - We should avoid some of the upper generated numbers to - avoid modulo bias. - */ - - long random_max = RAND_MAX; - long limit = random_max - (random_max + 1) % n; - long r = 1; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - r = random(); - while (r > limit) { r = random(); } -#else - r = rand(); - while (r > limit) { r = rand(); } -#endif - return r % n; -} - -unsigned long random_ulong(unsigned long n) -{ - /* - Generate a random integer in the range 0 to n-1, inclusive, - n must be > 0 - */ - - - unsigned long random_max = ULONG_MAX; - unsigned long limit = random_max - (random_max - n + 1) % n; - unsigned long r_long = 1; - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - - unsigned long r = ((random() << 48) ^ (random() << 32) ^ - (random() << 16) ^ (random())); - while (r > limit) - r = ((random() << 48) ^ (random() << 32) ^ - (random() << 16) ^ (random())); - - r_long = r; -#else - - long long r = ((rand() << 48) ^ (rand() << 32) ^ - (rand() << 16) ^ (rand())); - while (r > limit) - r = ((rand() << 48) ^ (rand() << 32) ^ - (rand() << 16) ^ (rand())); - - - r_long = (unsigned long) r; - -#endif - - return r_long % n; -} - -void string_normalize(char * normalized, char * s, unsigned int len) -{ - /* convert string to upper case and replace U by T */ - char * p = s; - char * q = normalized; - for(unsigned int i=0; i> 4]; - hex[2*i+1] = hexdigits[digest[i] & 15]; - } - hex[2*LEN_DIG_SHA1] = 0; -} - -void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen) -{ - /* Save hexadecimal representation of the MD5 hash of the sequence. - The string array digest must be large enough (LEN_HEX_DIG_MD5). - First normalize string by uppercasing it and replacing U's with T's. */ - - char * normalized = (char*) xmalloc(seqlen+1); - string_normalize(normalized, seq, seqlen); - - unsigned char digest[LEN_DIG_MD5]; - - MD5(normalized, (size_t) seqlen, digest); - - free(normalized); - - for(int i=0; i> 4]; - hex[2*i+1] = hexdigits[digest[i] & 15]; - } - hex[2*LEN_DIG_MD5] = 0; -} - - -void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen) -{ - char digest[LEN_HEX_DIG_SHA1]; - get_hex_seq_digest_sha1(digest, seq, seqlen); - fprintf(fp, "%s", digest); -} - -void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen) -{ - char digest[LEN_HEX_DIG_MD5]; - get_hex_seq_digest_md5(digest, seq, seqlen); - fprintf(fp, "%s", digest); -} - - diff --git a/source/vsearch_src/util.h b/source/vsearch_src/util.h deleted file mode 100755 index 012d335e..00000000 --- a/source/vsearch_src/util.h +++ /dev/null @@ -1,111 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#ifndef MIN -#define MIN(a,b) ((a) < (b) ? (a) : (b)) -#endif - -#ifndef MAX -#define MAX(a,b) ((a) > (b) ? (a) : (b)) -#endif - -#ifndef exp10 -#define exp10(x) (pow(10.0,(x))) -#endif - -#define MD5_DIGEST_LENGTH 16 -#define SHA_DIGEST_LENGTH SHA1_DIGEST_SIZE - -#define LEN_DIG_MD5 MD5_DIGEST_LENGTH -#define LEN_DIG_SHA1 SHA_DIGEST_LENGTH - -#define LEN_HEX_DIG_MD5 (2*LEN_DIG_MD5+1) -#define LEN_HEX_DIG_SHA1 (2*LEN_DIG_SHA1+1) - -long gcd(long a, long b); -void fatal(const char * msg); -void fatal(const char * format, const char * message); -void * xmalloc(size_t size); -void * xrealloc(void * ptr, size_t size); -char * xstrdup(const char *s); -char * xstrchrnul(char *s, int c); -unsigned long hash_cityhash64(char * s, unsigned long n); -long getusec(void); -void show_rusage(); - -void progress_init(const char * prompt, unsigned long size); -void progress_update(unsigned long progress); -void progress_done(); - -void random_init(); -long random_int(long n); -unsigned long random_ulong(unsigned long n); - -void string_normalize(char * normalized, char * s, unsigned int len); - -void reverse_complement(char * rc, char * seq, long len); - -void fprint_hex(FILE * fp, unsigned char * data, int len); - -void get_hex_seq_digest_sha1(char * hex, char * seq, int seqlen); -void get_hex_seq_digest_md5(char * hex, char * seq, int seqlen); - -void fprint_seq_digest_sha1(FILE * fp, char * seq, int seqlen); -void fprint_seq_digest_md5(FILE * fp, char * seq, int seqlen); diff --git a/source/vsearch_src/vsearch.cc b/source/vsearch_src/vsearch.cc deleted file mode 100755 index d9b94265..00000000 --- a/source/vsearch_src/vsearch.cc +++ /dev/null @@ -1,2482 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -#include "vsearch.h" - -/* options */ - -bool opt_fastq_allowmergestagger; -bool opt_fastq_nostagger; -bool opt_fastq_eeout; -bool opt_clusterout_id; -bool opt_clusterout_sort; -bool opt_eeout; -bool opt_quiet; -bool opt_relabel_keep; -bool opt_relabel_md5; -bool opt_relabel_sha1; -bool opt_samheader; -bool opt_sizeorder; -bool opt_xsize; -char * opt_eetabbedout; -char * opt_fastaout_notmerged_fwd; -char * opt_fastaout_notmerged_rev; -char * opt_fastq_mergepairs; -char * opt_fastqout_notmerged_fwd; -char * opt_fastqout_notmerged_rev; -char * opt_allpairs_global; -char * opt_alnout; -char * opt_blast6out; -char * opt_borderline; -char * opt_centroids; -char * opt_chimeras; -char * opt_cluster_fast; -char * opt_cluster_size; -char * opt_cluster_smallmem; -char * opt_clusters; -char * opt_consout; -char * opt_db; -char * opt_dbmatched; -char * opt_dbnotmatched; -char * opt_derep_fulllength; -char * opt_derep_prefix; -char * opt_fastaout; -char * opt_fastaout_discarded; -char * opt_fastapairs; -char * opt_fastq_chars; -char * opt_fastq_convert; -char * opt_fastq_filter; -char * opt_fastq_stats; -char * opt_fastqout; -char * opt_fastqout_discarded; -char * opt_fastx_mask; -char * opt_fastx_revcomp; -char * opt_fastx_subsample; -char * opt_label_suffix; -char * opt_log; -char * opt_maskfasta; -char * opt_matched; -char * opt_msaout; -char * opt_nonchimeras; -char * opt_notmatched; -char * opt_output; -char * opt_pattern; -char * opt_profile; -char * opt_relabel; -char * opt_samout; -char * opt_search_exact; -char * opt_shuffle; -char * opt_sortbylength; -char * opt_sortbysize; -char * opt_uc; -char * opt_uchime_denovo; -char * opt_uchime_ref; -char * opt_uchimealns; -char * opt_uchimeout; -char * opt_usearch_global; -char * opt_userout; -char * opt_reverse; -double opt_abskew; -double opt_dn; -double opt_fastq_maxee; -double opt_fastq_maxee_rate; -double opt_id; -double opt_max_unmasked_pct; -double opt_maxid; -double opt_maxqt; -double opt_maxsizeratio; -double opt_maxsl; -double opt_mid; -double opt_min_unmasked_pct; -double opt_mindiv; -double opt_minh; -double opt_minqt; -double opt_minsizeratio; -double opt_minsl; -double opt_query_cov; -double opt_sample_pct; -double opt_target_cov; -double opt_weak_id; -double opt_xn; -int opt_acceptall; -int opt_alignwidth; -int opt_cons_truncate; -int opt_gap_extension_query_interior; -int opt_gap_extension_query_left; -int opt_gap_extension_query_right; -int opt_gap_extension_target_interior; -int opt_gap_extension_target_left; -int opt_gap_extension_target_right; -int opt_gap_open_query_interior; -int opt_gap_open_query_left; -int opt_gap_open_query_right; -int opt_gap_open_target_interior; -int opt_gap_open_target_left; -int opt_gap_open_target_right; -int opt_help; -int opt_mindiffs; -int opt_slots; -int opt_uchimeout5; -int opt_usersort; -int opt_version; -long opt_fastq_maxdiffs; -long opt_fastq_maxmergelen; -long opt_fastq_minmergelen; -long opt_fastq_minovlen; -long opt_dbmask; -long opt_fasta_width; -long opt_fastq_ascii; -long opt_fastq_asciiout; -long opt_fastq_maxns; -long opt_fastq_minlen; -long opt_fastq_qmax; -long opt_fastq_qmaxout; -long opt_fastq_qmin; -long opt_fastq_qminout; -long opt_fastq_stripleft; -long opt_fastq_tail; -long opt_fastq_trunclen; -long opt_fastq_truncqual; -long opt_fulldp; -long opt_hardmask; -long opt_iddef; -long opt_idprefix; -long opt_idsuffix; -long opt_leftjust; -long opt_match; -long opt_maxaccepts; -long opt_maxdiffs; -long opt_maxgaps; -long opt_maxhits; -long opt_maxqsize; -long opt_maxrejects; -long opt_maxseqlength; -long opt_maxsize; -long opt_maxsubs; -long opt_maxuniquesize; -long opt_mincols; -long opt_minseqlength; -long opt_minsize; -long opt_mintsize; -long opt_minuniquesize; -long opt_minwordmatches; -long opt_mismatch; -long opt_notrunclabels; -long opt_output_no_hits; -long opt_qmask; -long opt_randseed; -long opt_rightjust; -long opt_rowlen; -long opt_sample_size; -long opt_self; -long opt_selfid; -long opt_sizein; -long opt_sizeout; -long opt_strand; -long opt_threads; -long opt_top_hits_only; -long opt_topn; -long opt_uc_allhits; -long opt_wordlength; - -/* Other variables */ - -/* cpu features available */ - -long mmx_present = 0; -long sse_present = 0; -long sse2_present = 0; -long sse3_present = 0; -long ssse3_present = 0; -long sse41_present = 0; -long sse42_present = 0; -long popcnt_present = 0; -long avx_present = 0; -long avx2_present = 0; - -static char * progname; -static char progheader[80]; -static char * cmdline; -static time_t time_start; -static time_t time_finish; - -FILE * fp_log = 0; - -abundance_t * global_abundance; - -#define cpuid(f1, f2, a, b, c, d) \ - __asm__ __volatile__ ("cpuid" \ - : "=a" (a), "=b" (b), "=c" (c), "=d" (d) \ - : "a" (f1), "c" (f2)); - -void cpu_features_detect() -{ - unsigned int a, b, c, d; - - cpuid(0, 0, a, b, c, d); - unsigned int maxlevel = a & 0xff; - - if (maxlevel >= 1) - { - cpuid(1, 0, a, b, c, d); - mmx_present = (d >> 23) & 1; - sse_present = (d >> 25) & 1; - sse2_present = (d >> 26) & 1; - sse3_present = (c >> 0) & 1; - ssse3_present = (c >> 9) & 1; - sse41_present = (c >> 19) & 1; - sse42_present = (c >> 20) & 1; - popcnt_present = (c >> 23) & 1; - avx_present = (c >> 28) & 1; - - if (maxlevel >= 7) - { - cpuid(7, 0, a, b, c, d); - avx2_present = (b >> 5) & 1; - } - } -} - -void cpu_features_show() -{ - fprintf(stderr, "CPU features:"); - if (mmx_present) - fprintf(stderr, " mmx"); - if (sse_present) - fprintf(stderr, " sse"); - if (sse2_present) - fprintf(stderr, " sse2"); - if (sse3_present) - fprintf(stderr, " sse3"); - if (ssse3_present) - fprintf(stderr, " ssse3"); - if (sse41_present) - fprintf(stderr, " sse4.1"); - if (sse42_present) - fprintf(stderr, " sse4.2"); - if (popcnt_present) - fprintf(stderr, " popcnt"); - if (avx_present) - fprintf(stderr, " avx"); - if (avx2_present) - fprintf(stderr, " avx2"); - fprintf(stderr, "\n"); -} - - -void args_get_gap_penalty_string(char * arg, int is_open) -{ - /* See http://www.drive5.com/usearch/manual/aln_params.html - - --gapopen *E/10I/1E/2L/3RQ/4RT/1IQ - --gapext *E/10I/1E/2L/3RQ/4RT/1IQ - - integer or * - followed by I, E, L, R, Q or T characters - separated by / - * means infinitely high (disallow) - E=end - I=interior - L=left - R=right - Q=query - T=target - - E cannot be combined with L or R - - We do not support floating point values. Therefore, - all default score and penalties are multiplied by 2. - - */ - - char *p = arg; - - while (*p) - { - int skip = 0; - int pen = 0; - - if (sscanf(p, "%d%n", &pen, &skip) == 1) - { - p += skip; - } - else if (*p == '*') - { - pen = 1000; - p++; - } - else - fatal("Invalid gap penalty argument (%s)", p); - - char * q = p; - - int set_E = 0; - int set_I = 0; - int set_L = 0; - int set_R = 0; - int set_Q = 0; - int set_T = 0; - - while((*p) && (*p != '/')) - { - switch(*p) - { - case 'E': - set_E = 1; - break; - case 'I': - set_I = 1; - break; - case 'L': - set_L = 1; - break; - case 'R': - set_R = 1; - break; - case 'Q': - set_Q = 1; - break; - case 'T': - set_T = 1; - break; - default: - fatal("Invalid char '%.1s' in gap penalty string", p); - break; - } - p++; - } - - if (*p == '/') - p++; - - if (set_E && (set_L || set_R)) - fatal("Invalid gap penalty string (E and L or R) '%s'", q); - - if (set_E) - { - set_L = 1; - set_R = 1; - } - - /* if neither L, I, R nor E is specified, it applies to all */ - - if ((!set_L) && (!set_I) && (!set_R)) - { - set_L = 1; - set_I = 1; - set_R = 1; - } - - /* if neither Q nor T is specified, it applies to both */ - - if ((!set_Q) && (!set_T)) - { - set_Q = 1; - set_T = 1; - } - - if (is_open) - { - if (set_Q) - { - if (set_L) - opt_gap_open_query_left = pen; - if (set_I) - opt_gap_open_query_interior = pen; - if (set_R) - opt_gap_open_query_right = pen; - } - if (set_T) - { - if (set_L) - opt_gap_open_target_left = pen; - if (set_I) - opt_gap_open_target_interior = pen; - if (set_R) - opt_gap_open_target_right = pen; - } - } - else - { - if (set_Q) - { - if (set_L) - opt_gap_extension_query_left = pen; - if (set_I) - opt_gap_extension_query_interior = pen; - if (set_R) - opt_gap_extension_query_right = pen; - } - if (set_T) - { - if (set_L) - opt_gap_extension_target_left = pen; - if (set_I) - opt_gap_extension_target_interior = pen; - if (set_R) - opt_gap_extension_target_right = pen; - } - } - } -} - - -long args_getlong(char * arg) -{ - int len = 0; - long temp = 0; - int ret = sscanf(arg, "%ld%n", &temp, &len); - if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) - fatal("Illegal option argument"); - return temp; -} - -double args_getdouble(char * arg) -{ - int len = 0; - double temp = 0; - int ret = sscanf(arg, "%lf%n", &temp, &len); - if ((ret == 0) || (((unsigned int)(len)) < strlen(arg))) - fatal("Illegal option argument"); - return temp; -} - -void args_init(int argc, char **argv) -{ - /* Set defaults */ - - progname = argv[0]; - - opt_abskew = 2.0; - opt_acceptall = 0; - opt_alignwidth = 80; - opt_allpairs_global = 0; - opt_alnout = 0; - opt_blast6out = 0; - opt_borderline = 0; - opt_centroids = 0; - opt_chimeras = 0; - opt_cluster_fast = 0; - opt_cluster_size = 0; - opt_cluster_smallmem = 0; - opt_clusterout_id = 0; - opt_clusterout_sort = 0; - opt_clusters = 0; - opt_cons_truncate = 0; - opt_consout = 0; - opt_db = 0; - opt_dbmask = MASK_DUST; - opt_dbmatched = 0; - opt_dbnotmatched = 0; - opt_derep_fulllength = 0; - opt_derep_prefix = 0; - opt_dn = 1.4; - opt_eeout = 0; - opt_eetabbedout = 0; - opt_fastaout_notmerged_fwd = 0; - opt_fastaout_notmerged_rev = 0; - opt_fasta_width = 80; - opt_fastaout = 0; - opt_fastaout_discarded = 0; - opt_fastapairs = 0; - opt_fastq_allowmergestagger = 0; - opt_fastq_ascii = 33; - opt_fastq_asciiout = 33; - opt_fastq_chars = 0; - opt_fastq_convert = 0; - opt_fastq_eeout = 0; - opt_fastq_filter = 0; - opt_fastq_maxdiffs = 1000000; - opt_fastq_maxee = DBL_MAX; - opt_fastq_maxee_rate = DBL_MAX; - opt_fastq_maxmergelen = 1000000; - opt_fastq_maxns = LONG_MAX; - opt_fastq_mergepairs = 0; - opt_fastq_minlen = 1; - opt_fastq_minmergelen = 0; - opt_fastq_minovlen = 16; - opt_fastq_nostagger = 1; - opt_fastqout_notmerged_fwd = 0; - opt_fastqout_notmerged_rev = 0; - opt_fastq_qmax = 41; - opt_fastq_qmaxout = 41; - opt_fastq_qmin = 0; - opt_fastq_qminout = 0; - opt_fastq_stats = 0; - opt_fastq_stripleft = 0; - opt_fastq_tail = 4; - opt_fastq_trunclen = 0; - opt_fastq_truncqual = LONG_MIN; - opt_fastqout = 0; - opt_fastqout_discarded = 0; - opt_fastx_mask = 0; - opt_fastx_revcomp = 0; - opt_fastx_subsample = 0; - opt_fulldp = 0; - opt_gap_extension_query_interior=2; - opt_gap_extension_query_left=1; - opt_gap_extension_query_right=1; - opt_gap_extension_target_interior=2; - opt_gap_extension_target_left=1; - opt_gap_extension_target_right=1; - opt_gap_open_query_interior=20; - opt_gap_open_query_left=2; - opt_gap_open_query_right=2; - opt_gap_open_target_interior=20; - opt_gap_open_target_left=2; - opt_gap_open_target_right=2; - opt_hardmask = 0; - opt_help = 0; - opt_id = -1.0; - opt_iddef = 2; - opt_idprefix = 0; - opt_idsuffix = 0; - opt_label_suffix = 0; - opt_leftjust = 0; - opt_log = 0; - opt_maskfasta = 0; - opt_match = 2; - opt_matched = 0; - opt_max_unmasked_pct = 100.0; - opt_maxaccepts = 1; - opt_maxdiffs = INT_MAX; - opt_maxgaps = INT_MAX; - opt_maxhits = LONG_MAX; - opt_maxid = 1.0; - opt_maxqsize = INT_MAX; - opt_maxqt = DBL_MAX; - opt_maxrejects = -1; - opt_maxseqlength = 50000; - opt_maxsize = LONG_MAX; - opt_maxsizeratio = DBL_MAX; - opt_maxsl = DBL_MAX; - opt_maxsubs = INT_MAX; - opt_maxuniquesize = LONG_MAX; - opt_mid = 0.0; - opt_min_unmasked_pct = 0.0; - opt_mincols = 0; - opt_mindiffs = 3; - opt_mindiv = 0.8; - opt_minh = 0.28; - opt_minqt = 0.0; - opt_minseqlength = 0; - opt_minsize = 0; - opt_minsizeratio = 0.0; - opt_minsl = 0.0; - opt_mintsize = 0; - opt_minuniquesize = 0; - opt_minwordmatches = 0; - opt_mismatch = -4; - opt_msaout = 0; - opt_nonchimeras = 0; - opt_notmatched = 0; - opt_notrunclabels = 0; - opt_output = 0; - opt_output_no_hits = 0; - opt_pattern = 0; - opt_profile = 0; - opt_qmask = MASK_DUST; - opt_query_cov = 0.0; - opt_quiet = false; - opt_randseed = 0; - opt_relabel = 0; - opt_relabel_keep = 0; - opt_relabel_md5 = 0; - opt_relabel_sha1 = 0; - opt_reverse = 0; - opt_rightjust = 0; - opt_rowlen = 64; - opt_samheader = 0; - opt_samout = 0; - opt_sample_pct = 0; - opt_sample_size = 0; - opt_search_exact = 0; - opt_self = 0; - opt_selfid = 0; - opt_shuffle = 0; - opt_sizein = 0; - opt_sizeorder = 0; - opt_sizeout = 0; - opt_slots = 0; - opt_sortbylength = 0; - opt_sortbysize = 0; - opt_strand = 1; - opt_target_cov = 0.0; - opt_threads = 0; - opt_top_hits_only = 0; - opt_topn = LONG_MAX; - opt_uc = 0; - opt_uc_allhits = 0; - opt_uchime_denovo = 0; - opt_uchime_ref = 0; - opt_uchimealns = 0; - opt_uchimeout = 0; - opt_uchimeout5 = 0; - opt_usearch_global = 0; - opt_userout = 0; - opt_usersort = 0; - opt_version = 0; - opt_weak_id = 10.0; - opt_wordlength = 8; - opt_xn = 8.0; - opt_xsize = 0; - - opterr = 1; - - static struct option long_options[] = - - { - {"help", no_argument, 0, 0 }, - {"version", no_argument, 0, 0 }, - {"alnout", required_argument, 0, 0 }, - {"usearch_global", required_argument, 0, 0 }, - {"db", required_argument, 0, 0 }, - {"id", required_argument, 0, 0 }, - {"maxaccepts", required_argument, 0, 0 }, - {"maxrejects", required_argument, 0, 0 }, - {"wordlength", required_argument, 0, 0 }, - {"match", required_argument, 0, 0 }, - {"mismatch", required_argument, 0, 0 }, - {"fulldp", no_argument, 0, 0 }, - {"strand", required_argument, 0, 0 }, - {"threads", required_argument, 0, 0 }, - {"gapopen", required_argument, 0, 0 }, - {"gapext", required_argument, 0, 0 }, - {"rowlen", required_argument, 0, 0 }, - {"userfields", required_argument, 0, 0 }, - {"userout", required_argument, 0, 0 }, - {"self", no_argument, 0, 0 }, - {"blast6out", required_argument, 0, 0 }, - {"uc", required_argument, 0, 0 }, - {"weak_id", required_argument, 0, 0 }, - {"uc_allhits", no_argument, 0, 0 }, - {"notrunclabels", no_argument, 0, 0 }, - {"sortbysize", required_argument, 0, 0 }, - {"output", required_argument, 0, 0 }, - {"minsize", required_argument, 0, 0 }, - {"maxsize", required_argument, 0, 0 }, - {"relabel", required_argument, 0, 0 }, - {"sizeout", no_argument, 0, 0 }, - {"derep_fulllength", required_argument, 0, 0 }, - {"minseqlength", required_argument, 0, 0 }, - {"minuniquesize", required_argument, 0, 0 }, - {"topn", required_argument, 0, 0 }, - {"maxseqlength", required_argument, 0, 0 }, - {"sizein", no_argument, 0, 0 }, - {"sortbylength", required_argument, 0, 0 }, - {"matched", required_argument, 0, 0 }, - {"notmatched", required_argument, 0, 0 }, - {"dbmatched", required_argument, 0, 0 }, - {"dbnotmatched", required_argument, 0, 0 }, - {"fastapairs", required_argument, 0, 0 }, - {"output_no_hits", no_argument, 0, 0 }, - {"maxhits", required_argument, 0, 0 }, - {"top_hits_only", no_argument, 0, 0 }, - {"fasta_width", required_argument, 0, 0 }, - {"query_cov", required_argument, 0, 0 }, - {"target_cov", required_argument, 0, 0 }, - {"idprefix", required_argument, 0, 0 }, - {"idsuffix", required_argument, 0, 0 }, - {"minqt", required_argument, 0, 0 }, - {"maxqt", required_argument, 0, 0 }, - {"minsl", required_argument, 0, 0 }, - {"maxsl", required_argument, 0, 0 }, - {"leftjust", no_argument, 0, 0 }, - {"rightjust", no_argument, 0, 0 }, - {"selfid", no_argument, 0, 0 }, - {"maxid", required_argument, 0, 0 }, - {"minsizeratio", required_argument, 0, 0 }, - {"maxsizeratio", required_argument, 0, 0 }, - {"maxdiffs", required_argument, 0, 0 }, - {"maxsubs", required_argument, 0, 0 }, - {"maxgaps", required_argument, 0, 0 }, - {"mincols", required_argument, 0, 0 }, - {"maxqsize", required_argument, 0, 0 }, - {"mintsize", required_argument, 0, 0 }, - {"mid", required_argument, 0, 0 }, - {"shuffle", required_argument, 0, 0 }, - {"randseed", required_argument, 0, 0 }, - {"maskfasta", required_argument, 0, 0 }, - {"hardmask", no_argument, 0, 0 }, - {"qmask", required_argument, 0, 0 }, - {"dbmask", required_argument, 0, 0 }, - {"cluster_smallmem", required_argument, 0, 0 }, - {"cluster_fast", required_argument, 0, 0 }, - {"centroids", required_argument, 0, 0 }, - {"clusters", required_argument, 0, 0 }, - {"consout", required_argument, 0, 0 }, - {"cons_truncate", no_argument, 0, 0 }, - {"msaout", required_argument, 0, 0 }, - {"usersort", no_argument, 0, 0 }, - {"xn", required_argument, 0, 0 }, - {"iddef", required_argument, 0, 0 }, - {"slots", required_argument, 0, 0 }, - {"pattern", required_argument, 0, 0 }, - {"maxuniquesize", required_argument, 0, 0 }, - {"abskew", required_argument, 0, 0 }, - {"chimeras", required_argument, 0, 0 }, - {"dn", required_argument, 0, 0 }, - {"mindiffs", required_argument, 0, 0 }, - {"mindiv", required_argument, 0, 0 }, - {"minh", required_argument, 0, 0 }, - {"nonchimeras", required_argument, 0, 0 }, - {"uchime_denovo", required_argument, 0, 0 }, - {"uchime_ref", required_argument, 0, 0 }, - {"uchimealns", required_argument, 0, 0 }, - {"uchimeout", required_argument, 0, 0 }, - {"uchimeout5", no_argument, 0, 0 }, - {"alignwidth", required_argument, 0, 0 }, - {"allpairs_global", required_argument, 0, 0 }, - {"acceptall", no_argument, 0, 0 }, - {"cluster_size", required_argument, 0, 0 }, - {"samout", required_argument, 0, 0 }, - {"log", required_argument, 0, 0 }, - {"quiet", no_argument, 0, 0 }, - {"fastx_subsample", required_argument, 0, 0 }, - {"sample_pct", required_argument, 0, 0 }, - {"fastq_chars", required_argument, 0, 0 }, - {"profile", required_argument, 0, 0 }, - {"sample_size", required_argument, 0, 0 }, - {"fastaout", required_argument, 0, 0 }, - {"xsize", no_argument, 0, 0 }, - {"clusterout_id", no_argument, 0, 0 }, - {"clusterout_sort", no_argument, 0, 0 }, - {"borderline", required_argument, 0, 0 }, - {"relabel_sha1", no_argument, 0, 0 }, - {"relabel_md5", no_argument, 0, 0 }, - {"derep_prefix", required_argument, 0, 0 }, - {"fastq_filter", required_argument, 0, 0 }, - {"fastqout", required_argument, 0, 0 }, - {"fastaout_discarded", required_argument, 0, 0 }, - {"fastqout_discarded", required_argument, 0, 0 }, - {"fastq_truncqual", required_argument, 0, 0 }, - {"fastq_maxee", required_argument, 0, 0 }, - {"fastq_trunclen", required_argument, 0, 0 }, - {"fastq_minlen", required_argument, 0, 0 }, - {"fastq_stripleft", required_argument, 0, 0 }, - {"fastq_maxee_rate", required_argument, 0, 0 }, - {"fastq_maxns", required_argument, 0, 0 }, - {"eeout", no_argument, 0, 0 }, - {"fastq_ascii", required_argument, 0, 0 }, - {"fastq_qmin", required_argument, 0, 0 }, - {"fastq_qmax", required_argument, 0, 0 }, - {"fastq_qmaxout", required_argument, 0, 0 }, - {"fastq_stats", required_argument, 0, 0 }, - {"fastq_tail", required_argument, 0, 0 }, - {"fastx_revcomp", required_argument, 0, 0 }, - {"label_suffix", required_argument, 0, 0 }, - {"h", no_argument, 0, 0 }, - {"samheader", no_argument, 0, 0 }, - {"sizeorder", no_argument, 0, 0 }, - {"minwordmatches", required_argument, 0, 0 }, - {"v", no_argument, 0, 0 }, - {"relabel_keep", no_argument, 0, 0 }, - {"search_exact", required_argument, 0, 0 }, - {"fastx_mask", required_argument, 0, 0 }, - {"min_unmasked_pct", required_argument, 0, 0 }, - {"max_unmasked_pct", required_argument, 0, 0 }, - {"fastq_convert", required_argument, 0, 0 }, - {"fastq_asciiout", required_argument, 0, 0 }, - {"fastq_qminout", required_argument, 0, 0 }, - {"fastq_mergepairs", required_argument, 0, 0 }, - {"fastq_eeout", no_argument, 0, 0 }, - {"fastqout_notmerged_fwd",required_argument, 0, 0 }, - {"fastqout_notmerged_rev",required_argument, 0, 0 }, - {"fastq_minovlen", required_argument, 0, 0 }, - {"fastq_minmergelen", required_argument, 0, 0 }, - {"fastq_maxmergelen", required_argument, 0, 0 }, - {"fastq_nostagger", no_argument, 0, 0 }, - {"fastq_allowmergestagger", no_argument, 0, 0 }, - {"fastq_maxdiffs", required_argument, 0, 0 }, - {"fastaout_notmerged_fwd",required_argument, 0, 0 }, - {"fastaout_notmerged_rev",required_argument, 0, 0 }, - {"reverse", required_argument, 0, 0 }, - {"eetabbedout", required_argument, 0, 0 }, - { 0, 0, 0, 0 } - }; - - int option_count = sizeof(long_options) / sizeof(struct option); - bool options_selected[option_count]; - - memset(options_selected, 0, sizeof(options_selected)); - - int option_index = 0; - int c; - - while ((c = getopt_long_only(argc, argv, "", long_options, - &option_index)) == 0) - { - if (option_index < option_count) - options_selected[option_index] = 1; - - switch(option_index) - { - case 0: - opt_help = 1; - break; - - case 1: - opt_version = 1; - break; - - case 2: - opt_alnout = optarg; - break; - - case 3: - opt_usearch_global = optarg; - break; - - case 4: - opt_db = optarg; - break; - - case 5: - opt_id = args_getdouble(optarg); - break; - - case 6: - opt_maxaccepts = args_getlong(optarg); - break; - - case 7: - opt_maxrejects = args_getlong(optarg); - break; - - case 8: - opt_wordlength = args_getlong(optarg); - break; - - case 9: - opt_match = args_getlong(optarg); - break; - - case 10: - opt_mismatch = args_getlong(optarg); - break; - - case 11: - opt_fulldp = 1; - break; - - case 12: - if (strcasecmp(optarg, "plus") == 0) - opt_strand = 1; - else if (strcasecmp(optarg, "both") == 0) - opt_strand = 2; - else - opt_strand = 0; - break; - - case 13: - opt_threads = (long) args_getdouble(optarg); - break; - - case 14: - args_get_gap_penalty_string(optarg, 1); - break; - - case 15: - args_get_gap_penalty_string(optarg, 0); - break; - - case 16: - opt_rowlen = args_getlong(optarg); - break; - - case 17: - if (!parse_userfields_arg(optarg)) - fatal("Unrecognized userfield argument"); - break; - - case 18: - opt_userout = optarg; - break; - - case 19: - opt_self = 1; - break; - - case 20: - opt_blast6out = optarg; - break; - - case 21: - opt_uc = optarg; - break; - - case 22: - opt_weak_id = args_getdouble(optarg); - break; - - case 23: - opt_uc_allhits = 1; - break; - - case 24: - opt_notrunclabels = 1; - break; - - case 25: - opt_sortbysize = optarg; - break; - - case 26: - opt_output = optarg; - break; - - case 27: - opt_minsize = args_getlong(optarg); - break; - - case 28: - opt_maxsize = args_getlong(optarg); - break; - - case 29: - opt_relabel = optarg; - break; - - case 30: - opt_sizeout = 1; - break; - - case 31: - opt_derep_fulllength = optarg; - break; - - case 32: - opt_minseqlength = args_getlong(optarg); - break; - - case 33: - opt_minuniquesize = args_getlong(optarg); - break; - - case 34: - opt_topn = args_getlong(optarg); - break; - - case 35: - opt_maxseqlength = args_getlong(optarg); - break; - - case 36: - opt_sizein = 1; - break; - - case 37: - opt_sortbylength = optarg; - break; - - case 38: - opt_matched = optarg; - break; - - case 39: - opt_notmatched = optarg; - break; - - case 40: - opt_dbmatched = optarg; - break; - - case 41: - opt_dbnotmatched = optarg; - break; - - case 42: - opt_fastapairs = optarg; - break; - - case 43: - opt_output_no_hits = 1; - break; - - case 44: - opt_maxhits = args_getlong(optarg); - break; - - case 45: - opt_top_hits_only = 1; - break; - - case 46: - opt_fasta_width = args_getlong(optarg); - break; - - case 47: - opt_query_cov = args_getdouble(optarg); - break; - - case 48: - opt_target_cov = args_getdouble(optarg); - break; - - case 49: - opt_idprefix = args_getlong(optarg); - break; - - case 50: - opt_idsuffix = args_getlong(optarg); - break; - - case 51: - opt_minqt = args_getdouble(optarg); - break; - - case 52: - opt_maxqt = args_getdouble(optarg); - break; - - case 53: - opt_minsl = args_getdouble(optarg); - break; - - case 54: - opt_maxsl = args_getdouble(optarg); - break; - - case 55: - opt_leftjust = 1; - break; - - case 56: - opt_rightjust = 1; - break; - - case 57: - opt_selfid = 1; - break; - - case 58: - opt_maxid = args_getdouble(optarg); - break; - - case 59: - opt_minsizeratio = args_getdouble(optarg); - break; - - case 60: - opt_maxsizeratio = args_getdouble(optarg); - break; - - case 61: - opt_maxdiffs = args_getlong(optarg); - break; - - case 62: - opt_maxsubs = args_getlong(optarg); - break; - - case 63: - opt_maxgaps = args_getlong(optarg); - break; - - case 64: - opt_mincols = args_getlong(optarg); - break; - - case 65: - opt_maxqsize = args_getlong(optarg); - break; - - case 66: - opt_mintsize = args_getlong(optarg); - break; - - case 67: - opt_mid = args_getdouble(optarg); - break; - - case 68: - opt_shuffle = optarg; - break; - - case 69: - opt_randseed = args_getlong(optarg); - break; - - case 70: - opt_maskfasta = optarg; - break; - - case 71: - opt_hardmask = 1; - break; - - case 72: - if (strcasecmp(optarg, "none") == 0) - opt_qmask = MASK_NONE; - else if (strcasecmp(optarg, "dust") == 0) - opt_qmask = MASK_DUST; - else if (strcasecmp(optarg, "soft") == 0) - opt_qmask = MASK_SOFT; - else - opt_qmask = MASK_ERROR; - break; - - case 73: - if (strcasecmp(optarg, "none") == 0) - opt_dbmask = MASK_NONE; - else if (strcasecmp(optarg, "dust") == 0) - opt_dbmask = MASK_DUST; - else if (strcasecmp(optarg, "soft") == 0) - opt_dbmask = MASK_SOFT; - else - opt_dbmask = MASK_ERROR; - break; - - case 74: - opt_cluster_smallmem = optarg; - break; - - case 75: - opt_cluster_fast = optarg; - break; - - case 76: - opt_centroids = optarg; - break; - - case 77: - opt_clusters = optarg; - break; - - case 78: - opt_consout = optarg; - break; - - case 79: - fprintf(stderr, "WARNING: Option --cons_truncate is ignored\n"); - opt_cons_truncate = 1; - break; - - case 80: - opt_msaout = optarg; - break; - - case 81: - opt_usersort = 1; - break; - - case 82: - opt_xn = args_getdouble(optarg); - break; - - case 83: - opt_iddef = args_getlong(optarg); - break; - - case 84: - fprintf(stderr, "WARNING: Option --slots is ignored\n"); - opt_slots = args_getlong(optarg); - break; - - case 85: - fprintf(stderr, "WARNING: Option --pattern is ignored\n"); - opt_pattern = optarg; - break; - - case 86: - opt_maxuniquesize = args_getlong(optarg); - break; - - case 87: - opt_abskew = args_getdouble(optarg); - break; - - case 88: - opt_chimeras = optarg; - break; - - case 89: - opt_dn = args_getdouble(optarg); - break; - - case 90: - opt_mindiffs = args_getlong(optarg); - break; - - case 91: - opt_mindiv = args_getdouble(optarg); - break; - - case 92: - opt_minh = args_getdouble(optarg); - break; - - case 93: - opt_nonchimeras = optarg; - break; - - case 94: - opt_uchime_denovo = optarg; - break; - - case 95: - opt_uchime_ref = optarg; - break; - - case 96: - opt_uchimealns = optarg; - break; - - case 97: - opt_uchimeout = optarg; - break; - - case 98: - opt_uchimeout5 = 1; - break; - - case 99: - opt_alignwidth = args_getlong(optarg); - break; - - case 100: - opt_allpairs_global = optarg; - break; - - case 101: - opt_acceptall = 1; - break; - - case 102: - opt_cluster_size = optarg; - break; - - case 103: - opt_samout = optarg; - break; - - case 104: - opt_log = optarg; - break; - - case 105: - opt_quiet = true; - break; - - case 106: - opt_fastx_subsample = optarg; - break; - - case 107: - opt_sample_pct = args_getdouble(optarg); - break; - - case 108: - opt_fastq_chars = optarg; - break; - - case 109: - opt_profile = optarg; - break; - - case 110: - opt_sample_size = args_getlong(optarg); - break; - - case 111: - opt_fastaout = optarg; - break; - - case 112: - opt_xsize = 1; - break; - - case 113: - opt_clusterout_id = 1; - break; - - case 114: - opt_clusterout_sort = 1; - break; - - case 115: - opt_borderline = optarg; - break; - - case 116: - opt_relabel_sha1 = 1; - break; - - case 117: - opt_relabel_md5 = 1; - break; - - case 118: - opt_derep_prefix = optarg; - break; - - case 119: - opt_fastq_filter = optarg; - break; - - case 120: - opt_fastqout = optarg; - break; - - case 121: - opt_fastaout_discarded = optarg; - break; - - case 122: - opt_fastqout_discarded = optarg; - break; - - case 123: - opt_fastq_truncqual = args_getlong(optarg); - break; - - case 124: - opt_fastq_maxee = args_getdouble(optarg); - break; - - case 125: - opt_fastq_trunclen = args_getlong(optarg); - break; - - case 126: - opt_fastq_minlen = args_getlong(optarg); - break; - - case 127: - opt_fastq_stripleft = args_getlong(optarg); - break; - - case 128: - opt_fastq_maxee_rate = args_getdouble(optarg); - break; - - case 129: - opt_fastq_maxns = args_getlong(optarg); - break; - - case 130: - opt_eeout = 1; - break; - - case 131: - opt_fastq_ascii = args_getlong(optarg); - break; - - case 132: - opt_fastq_qmin = args_getlong(optarg); - break; - - case 133: - opt_fastq_qmax = args_getlong(optarg); - break; - - case 134: - opt_fastq_qmaxout = args_getlong(optarg); - break; - - case 135: - opt_fastq_stats = optarg; - break; - - case 136: - opt_fastq_tail = args_getlong(optarg); - break; - - case 137: - opt_fastx_revcomp = optarg; - break; - - case 138: - opt_label_suffix = optarg; - break; - - case 139: - opt_help = 1; - break; - - case 140: - opt_samheader = 1; - break; - - case 141: - opt_sizeorder = 1; - break; - - case 142: - opt_minwordmatches = args_getlong(optarg); - break; - - case 143: - opt_version = 1; - break; - - case 144: - opt_relabel_keep = 1; - break; - - case 145: - opt_search_exact = optarg; - break; - - case 146: - opt_fastx_mask = optarg; - break; - - case 147: - opt_min_unmasked_pct = args_getdouble(optarg); - break; - - case 148: - opt_max_unmasked_pct = args_getdouble(optarg); - break; - - case 149: - opt_fastq_convert = optarg; - break; - - case 150: - opt_fastq_asciiout = args_getlong(optarg); - break; - - case 151: - opt_fastq_qminout = args_getlong(optarg); - break; - - case 152: - opt_fastq_mergepairs = optarg; - break; - - case 153: - opt_fastq_eeout = 1; - break; - - case 154: - opt_fastqout_notmerged_fwd = optarg; - break; - - case 155: - opt_fastqout_notmerged_rev = optarg; - break; - - case 156: - opt_fastq_minovlen = args_getlong(optarg); - break; - - case 157: - opt_fastq_minmergelen = args_getlong(optarg); - break; - - case 158: - opt_fastq_maxmergelen = args_getlong(optarg); - break; - - case 159: - opt_fastq_nostagger = optarg; - break; - - case 160: - opt_fastq_allowmergestagger = 1; - break; - - case 161: - opt_fastq_maxdiffs = args_getlong(optarg); - break; - - case 162: - opt_fastaout_notmerged_fwd = optarg; - break; - - case 163: - opt_fastaout_notmerged_rev = optarg; - break; - - case 164: - opt_reverse = optarg; - break; - - case 165: - opt_eetabbedout = optarg; - break; - - default: - fatal("Internal error in option parsing"); - } - } - - /* Terminate if ambiguous or illegal options have been detected */ - if (c != -1) - exit(EXIT_FAILURE); - - /* Terminate after reporting any extra non-option arguments */ - if (optind < argc) - fatal("Unrecognized string on command line (%s)", argv[optind]); - - int commands = 0; - - if (opt_fastq_chars) - commands++; - if (opt_fastq_filter) - commands++; - if (opt_fastq_stats) - commands++; - if (opt_usearch_global) - commands++; - if (opt_sortbysize) - commands++; - if (opt_sortbylength) - commands++; - if (opt_derep_fulllength) - commands++; - if (opt_derep_prefix) - commands++; - if (opt_help) - commands++; - if (opt_version) - commands++; - if (opt_shuffle) - commands++; - if (opt_fastx_subsample) - commands++; - if (opt_maskfasta) - commands++; - if (opt_cluster_smallmem) - commands++; - if (opt_cluster_fast) - commands++; - if (opt_cluster_size) - commands++; - if (opt_uchime_denovo) - commands++; - if (opt_uchime_ref) - commands++; - if (opt_allpairs_global) - commands++; - if (opt_fastx_revcomp) - commands++; - if (opt_search_exact) - commands++; - if (opt_fastx_mask) - commands++; - if (opt_fastq_convert) - commands++; - if (opt_fastq_mergepairs) - commands++; - - if (commands > 1) - fatal("More than one command specified"); - - if (opt_weak_id > opt_id) - opt_weak_id = opt_id; - - if (opt_maxrejects == -1) - { - if (opt_cluster_fast) - opt_maxrejects = 8; - else - opt_maxrejects = 32; - } - - if (opt_minseqlength < 0) - fatal("The argument to --minseqlength must be positive"); - - if (opt_maxaccepts < 0) - fatal("The argument to --maxaccepts must not be negative"); - - if (opt_maxrejects < 0) - fatal("The argument to --maxrejects must not be negative"); - - if ((opt_threads < 0) || (opt_threads > 1024)) - fatal("The argument to --threads must be in the range 0 (default) to 1024"); - - if ((opt_wordlength < 7) || (opt_wordlength > 15)) - fatal("The argument to --wordlength must be in the range 7 to 15"); - - if ((opt_iddef < 0) || (opt_iddef > 4)) - fatal("The argument to --iddef must in the range 0 to 4"); - - if (opt_match <= 0) - fatal("The argument to --match must be positive"); - - if (opt_mismatch >= 0) - fatal("The argument to --mismatch must be negative"); - - if (opt_alignwidth < 0) - fatal("The argument to --alignwidth must not be negative"); - - if (opt_rowlen < 0) - fatal("The argument to --rowlen must not be negative"); - - if (opt_strand < 1) - fatal("The argument to --strand must be plus or both"); - - if (opt_qmask == MASK_ERROR) - fatal("The argument to --qmask must be none, dust or soft"); - - if (opt_dbmask == MASK_ERROR) - fatal("The argument to --dbmask must be none, dust or soft"); - - if ((opt_sample_pct < 0.0) || (opt_sample_pct > 100.0)) - fatal("The argument to --sample_pct must be in the range 0.0 to 100.0"); - - if (opt_sample_size < 0) - fatal("The argument to --sample_size must not be negative"); - - if (opt_relabel_sha1 && opt_relabel_md5) - fatal("Specify either --relabel_sha1 or --relabel_md5, not both"); - - if (opt_fastq_tail < 1) - fatal("The argument to --fastq_tail must be positive"); - - if (opt_minwordmatches < 0) - fatal("The argument to --minwordmatches must not be negative"); - - if ((opt_min_unmasked_pct < 0.0) && (opt_min_unmasked_pct > 100.0)) - fatal("The argument to --min_unmasked_pct must be between 0.0 and 100.0"); - - if ((opt_max_unmasked_pct < 0.0) && (opt_max_unmasked_pct > 100.0)) - fatal("The argument to --max_unmasked_pct must be between 0.0 and 100.0"); - - if (opt_min_unmasked_pct > opt_max_unmasked_pct) - fatal("The argument to --min_unmasked_pct cannot be larger than to --max_unmasked_pct"); - - if (opt_fastq_qmin > opt_fastq_qmax) - fatal("The argument to --fastq_qmin cannot be larger than to --fastq_qmax"); - - if (opt_fastq_qminout > opt_fastq_qmaxout) - fatal("The argument to --fastq_qminout cannot be larger than to --fastq_qmaxout"); - - /* TODO: check valid range of gap penalties */ - - /* adapt/adjust parameters */ - -#if 1 - - /* - Adjust gap open penalty according to convention. - - The specified gap open penalties include the penalty for - a single nucleotide gap: - - gap penalty = gap open penalty + (gap length - 1) * gap extension penalty - - The rest of the code assumes the first nucleotide gap penalty is not - included in the gap opening penalty. - */ - - opt_gap_open_query_left -= opt_gap_extension_query_left; - opt_gap_open_target_left -= opt_gap_extension_target_left; - opt_gap_open_query_interior -= opt_gap_extension_query_interior; - opt_gap_open_target_interior -= opt_gap_extension_target_interior; - opt_gap_open_query_right -= opt_gap_extension_query_right; - opt_gap_open_target_right -= opt_gap_extension_target_right; - -#endif - - if (opt_minwordmatches == 0) - opt_minwordmatches = minwordmatches_defaults[opt_wordlength]; - - if (opt_threads == 0) { - int numProcessors = 1; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - numProcessors = sysconf(_SC_NPROCESSORS_ONLN) -#else - SYSTEM_INFO sysinfo; - GetSystemInfo(&sysinfo); - numProcessors = sysinfo.dwNumberOfProcessors; -#endif - - opt_threads = numProcessors; - } - /* set default opt_minseqlength depending on command */ - - if (opt_minseqlength == 0) - { - if (opt_cluster_smallmem || opt_cluster_fast || opt_cluster_size || - opt_usearch_global || opt_derep_fulllength || opt_derep_prefix ) - opt_minseqlength = 32; - else - opt_minseqlength = 1; - } -} - - -void cmd_help() -{ - /* 0 1 2 3 4 5 6 7 */ - /* 01234567890123456789012345678901234567890123456789012345678901234567890123456789 */ - - if (! opt_quiet) - { - fprintf(stdout, - "Usage: %s [OPTIONS]\n", progname); - - fprintf(stdout, - "\n" - "General options\n" - " --fasta_width INT width of FASTA seq lines, 0 for no wrap (80)\n" - " --help | --h display help information\n" - " --log FILENAME write messages, timing and memory info to file\n" - " --maxseqlength INT maximum sequence length (50000)\n" - " --minseqlength INT min seq length (clust/derep/search: 32, other:1)\n" - " --notrunclabels do not truncate labels at first space\n" - " --quiet output just warnings and fatal errors to stderr\n" - " --threads INT number of threads to use, zero for all cores (0)\n" - " --version display version information\n" - "\n" - "Chimera detection\n" - " --uchime_denovo FILENAME detect chimeras de novo\n" - " --uchime_ref FILENAME detect chimeras using a reference database\n" - "Options\n" - " --abskew REAL min abundance ratio of parent vs chimera (2.0)\n" - " --alignwidth INT width of alignment in uchimealn output (80)\n" - " --borderline FILENAME output borderline chimeric sequences to file\n" - " --chimeras FILENAME output chimeric sequences to file\n" - " --db FILENAME reference database for --uchime_ref\n" - " --dn REAL 'no' vote pseudo-count (1.4)\n" - " --mindiffs INT minimum number of differences in segment (3)\n" - " --mindiv REAL minimum divergence from closest parent (0.8)\n" - " --minh REAL minimum score (0.28)\n" - " --nonchimeras FILENAME output non-chimeric sequences to file\n" - " --relabel STRING relabel nonchimeras with this prefix string\n" - " --relabel_keep keep the old label after the new when relabelling\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --self exclude identical labels for --uchime_ref\n" - " --selfid exclude identical sequences for --uchime_ref\n" - " --sizeout include abundance information when relabelling\n" - " --uchimealns FILENAME output chimera alignments to file\n" - " --uchimeout FILENAME output to chimera info to tab-separated file\n" - " --uchimeout5 make output compatible with uchime version 5\n" - " --xn REAL 'no' vote weight (8.0)\n" - " --xsize strip abundance information in output\n" - "\n" - "Clustering\n" - " --cluster_fast FILENAME cluster sequences after sorting by length\n" - " --cluster_size FILENAME cluster sequences after sorting by abundance\n" - " --cluster_smallmem FILENAME cluster already sorted sequences (see -usersort)\n" - "Options (most searching options also apply)\n" - " --centroids FILENAME output centroid sequences to FASTA file\n" - " --clusterout_id add cluster id info to consout and profile files\n" - " --clusterout_sort order msaout, consout, profile by decr abundance\n" - " --clusters STRING output each cluster to a separate FASTA file\n" - " --consout FILENAME output cluster consensus sequences to FASTA file\n" - " --cons_truncate do not ignore terminal gaps in MSA for consensus\n" - " --id REAL reject if identity lower\n" - " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" - " --msaout FILENAME output multiple seq. alignments to FASTA file\n" - " --profile FILENAME output sequence profile of each cluster to file\n" - " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" - " --relabel STRING relabel centroids with this prefix string\n" - " --relabel_keep keep the old label after the new when relabelling\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sizein propagate abundance annotation from input\n" - " --sizeorder sort accepted centroids by abundance (AGC)\n" - " --sizeout write cluster abundances to centroid file\n" - " --strand plus|both cluster using plus or both strands (plus)\n" - " --uc FILENAME specify filename for UCLUST-like output\n" - " --usersort indicate sequences not pre-sorted by length\n" - " --xsize strip abundance information in output\n" - "\n" - "Dereplication\n" - " --derep_fulllength FILENAME dereplicate sequences in the given FASTA file\n" - " --derep_prefix FILENAME dereplicate sequences in file based on prefixes\n" - "Options\n" - " --maxuniquesize INT maximum abundance for output from dereplication\n" - " --minuniquesize INT minimum abundance for output from dereplication\n" - " --output FILENAME output FASTA file\n" - " --relabel STRING relabel with this prefix string after derep.\n" - " --relabel_keep keep the old label after the new when relabelling\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sizein propagate abundance annotation from input\n" - " --sizeout write abundance annotation to output\n" - " --strand plus|both dereplicate plus or both strands (plus)\n" - " --topn INT output just the n most abundant sequences\n" - " --uc FILENAME filename for UCLUST-like output\n" - " --xsize strip abundance information in output\n" - "\n" - "FASTQ filtering\n" - " --fastq_filter FILENAME filter FASTQ file, output to FASTQ or FASTA file\n" - "Options\n" - " --eeout include expected errors in FASTQ filter output\n" - " --fastaout FILENAME FASTA output filename for passed sequences\n" - " --fastaout_discarded FNAME FASTA filename for discarded sequences\n" - " --fastqout FILENAME FASTQ output filename for passed sequences\n" - " --fastqout_discarded FNAME FASTQ filename for discarded sequences\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_maxee REAL maximum expected error value for FASTQ filter\n" - " --fastq_maxee_rate REAL maximum expected error rate for FASTQ filter\n" - " --fastq_maxns INT maximum number of N's for FASTQ filter\n" - " --fastq_minlen INT minimum length for FASTQ filter\n" - " --fastq_stripleft INT bases on the left to delete for FASTQ filter\n" - " --fastq_trunclen INT read length for FASTQ filter truncation\n" - " --fastq_truncqual INT base quality value for FASTQ filter truncation\n" - " --relabel STRING relabel filtered sequences with given prefix\n" - " --relabel_keep keep the old label after the new when relabelling\n" - " --relabel_md5 relabel filtered sequences with md5 digest\n" - " --relabel_sha1 relabel filtered sequences with sha1 digest\n" - " --sizeout include abundance information when relabelling\n" - " --xsize strip abundance information in output\n" - "\n" - "FASTQ format conversion\n" - " --fastq_convert FILENAME convert between FASTQ file formats\n" - "Options\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_asciiout INT FASTQ output quality score ASCII base char (33)\n" - " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" - " --fastq_qmaxout INT maximum base quality value for FASTQ output (41)\n" - " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" - " --fastq_qminout INT minimum base quality value for FASTQ output (0)\n" - "\n" - "FASTQ format detection and quality analysis\n" - " --fastq_chars FILENAME analyse FASTQ file for version and quality range\n" - "Options\n" - " --fastq_tail INT min length of tails to count for fastq_chars (4)\n" - "\n" - "FASTQ paired-end reads merging\n" - " --fastq_mergepairs FILENAME merge paired-end reads into one sequence\n" - "Options:\n" - " --eetabbedout FILENAME output error statistics to specified file\n" - " --fastaout FILENAME FASTA output filename for merged sequences\n" - " --fastaout_notmerged_fwd FN FASTA filename for non-merged forward sequences\n" - " --fastaout_notmerged_rev FN FASTA filename for non-merged reverse sequences\n" - " --fastq_allowmergestagger Allow merging of staggered reads\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_eeout include expected errors in FASTQ output\n" - " --fastq_maxdiffs maximum number of different bases in overlap\n" - " --fastq_maxee REAL maximum expected error value for merged sequence\n" - " --fastq_maxmergelen maximum length of entire merged sequence\n" - " --fastq_maxns INT maximum number of N's\n" - " --fastq_minlen INT minimum input read length after truncation (1)\n" - " --fastq_minmergelen minimum length of entire merged sequence\n" - " --fastq_minovlen minimum length of overlap between reads\n" - " --fastq_nostagger disallow merging of staggered reads (default)\n" - " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" - " --fastq_qmaxout INT maximum base quality value for FASTQ output (41)\n" - " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" - " --fastq_qminout INT minimum base quality value for FASTQ output (0)\n" - " --fastq_truncqual INT base quality value for truncation\n" - " --fastqout FILENAME FASTQ output filename for merged sequences\n" - " --fastqout_notmerged_fwd F FASTQ filename for non-merged forward sequences\n" - " --fastqout_notmerged_rev F FASTQ filename for non-merged reverse sequences\n" - " --label_suffix suffix to append to label of merged sequences\n" - " --reverse FILENAME specify FASTQ file with reverse reads\n" - "\n" - "FASTQ quality statistics\n" - " --fastq_stats FILENAME report FASTQ file statistics\n" - "Options\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" - " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" - "\n" - "Masking (new)\n" - " --fastx_mask FILENAME mask sequences in the given FASTA or FASTQ file\n" - "Options\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" - " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" - " --fastaout FILENAME output to specified FASTA file\n" - " --fastqout FILENAME output to specified FASTQ file\n" - " --hardmask mask by replacing with N instead of lower case\n" - " --max_unmasked_pct max unmasked %% of sequences to keep (100.0)\n" - " --min_unmasked_pct min unmasked %% of sequences to keep (0.0)\n" - " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" - "\n" - "Masking (old)\n" - " --maskfasta FILENAME mask sequences in the given FASTA file\n" - "Options\n" - " --hardmask mask by replacing with N instead of lower case\n" - " --output FILENAME output to specified FASTA file\n" - " --qmask none|dust|soft mask seqs with dust, soft or no method (dust)\n" - "\n" - "Pairwise alignment\n" - " --allpairs_global FILENAME perform global alignment of all sequence pairs\n" - "Options (most searching options also apply)\n" - " --alnout FILENAME filename for human-readable alignment output\n" - " --acceptall output all pairwise alignments\n" - "\n" - "Reverse complementation\n" - " --fastx_revcomp FILENAME Reverse-complement seqs in FASTA or FASTQ file\n" - "Options\n" - " --fastaout FILENAME FASTA output filename\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" - " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" - " --fastqout FILENAME FASTQ output filename\n" - " --label_suffix STRING Label to append to identifier in the output\n" - "\n" - "Searching\n" - " --search_exact FILENAME filename of queries for exact match search\n" - " --usearch_global FILENAME filename of queries for global alignment search\n" - "Options\n" - " --alnout FILENAME filename for human-readable alignment output\n" - " --blast6out FILENAME filename for blast-like tab-separated output\n" - " --db FILENAME filename for FASTA formatted database for search\n" - " --dbmask none|dust|soft mask db with dust, soft or no method (dust)\n" - " --dbmatched FILENAME FASTA file for matching database sequences\n" - " --dbnotmatched FILENAME FASTA file for non-matching database sequences\n" - " --fastapairs FILENAME FASTA file with pairs of query and target\n" - " --fulldp full dynamic programming alignment (always on)\n" - " --gapext STRING penalties for gap extension (2I/1E)\n" - " --gapopen STRING penalties for gap opening (20I/2E)\n" - " --hardmask mask by replacing with N instead of lower case\n" - " --id REAL reject if identity lower\n" - " --iddef INT id definition, 0-4=CD-HIT,all,int,MBL,BLAST (2)\n" - " --idprefix INT reject if first n nucleotides do not match\n" - " --idsuffix INT reject if last n nucleotides do not match\n" - " --leftjust reject if terminal gaps at alignment left end\n" - " --match INT score for match (2)\n" - " --matched FILENAME FASTA file for matching query sequences\n" - " --maxaccepts INT number of hits to accept and show per strand (1)\n" - " --maxdiffs INT reject if more substitutions or indels\n" - " --maxgaps INT reject if more indels\n" - " --maxhits INT maximum number of hits to show (unlimited)\n" - " --maxid REAL reject if identity higher\n" - " --maxqsize INT reject if query abundance larger\n" - " --maxqt REAL reject if query/target length ratio higher\n" - " --maxrejects INT number of non-matching hits to consider (32)\n" - " --maxsizeratio REAL reject if query/target abundance ratio higher\n" - " --maxsl REAL reject if shorter/longer length ratio higher\n" - " --maxsubs INT reject if more substitutions\n" - " --mid REAL reject if percent identity lower, ignoring gaps\n" - " --mincols INT reject if alignment length shorter\n" - " --minqt REAL reject if query/target length ratio lower\n" - " --minsizeratio REAL reject if query/target abundance ratio lower\n" - " --minsl REAL reject if shorter/longer length ratio lower\n" - " --mintsize INT reject if target abundance lower\n" - " --minwordmatches INT minimum number of word matches required (10)\n" - " --mismatch INT score for mismatch (-4)\n" - " --notmatched FILENAME FASTA file for non-matching query sequences\n" - " --output_no_hits output non-matching queries to output files\n" - " --pattern STRING option is ignored\n" - " --qmask none|dust|soft mask query with dust, soft or no method (dust)\n" - " --query_cov REAL reject if fraction of query seq. aligned lower\n" - " --rightjust reject if terminal gaps at alignment right end\n" - " --rowlen INT width of alignment lines in alnout output (64)\n" - " --samheader include a header in the SAM output file\n" - " --samout FILENAME filename for SAM format output\n" - " --self reject if labels identical\n" - " --selfid reject if sequences identical\n" - " --sizeout write abundance annotation to dbmatched file\n" - " --slots INT option is ignored\n" - " --strand plus|both search plus or both strands (plus)\n" - " --target_cov REAL reject if fraction of target seq. aligned lower\n" - " --top_hits_only output only hits with identity equal to the best\n" - " --uc FILENAME filename for UCLUST-like output\n" - " --uc_allhits show all, not just top hit with uc output\n" - " --userfields STRING fields to output in userout file\n" - " --userout FILENAME filename for user-defined tab-separated output\n" - " --weak_id REAL include aligned hits with >= id; continue search\n" - " --wordlength INT length of words for database index 3-15 (8)\n" - "\n" - "Shuffling and sorting\n" - " --shuffle FILENAME shuffle order of sequences in FASTA file randomly\n" - " --sortbylength FILENAME sort sequences by length in given FASTA file\n" - " --sortbysize FILENAME abundance sort sequences in given FASTA file\n" - "Options\n" - " --maxsize INT maximum abundance for sortbysize\n" - " --minsize INT minimum abundance for sortbysize\n" - " --output FILENAME output to specified FASTA file\n" - " --randseed INT seed for PRNG, zero to use random data source (0)\n" - " --relabel STRING relabel sequences with this prefix string\n" - " --relabel_keep keep the old label after the new when relabelling\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sizeout include abundance information when relabelling\n" - " --topn INT output just first n sequences\n" - " --xsize strip abundance information in output\n" - "\n" - "Subsampling\n" - " --fastx_subsample FILENAME subsample sequences from given FASTA/FASTQ file\n" - "Options\n" - " --fastaout FILENAME output FASTA file for subsamples\n" - " --fastq_ascii INT FASTQ input quality score ASCII base char (33)\n" - " --fastq_qmax INT maximum base quality value for FASTQ input (41)\n" - " --fastq_qmin INT minimum base quality value for FASTQ input (0)\n" - " --fastqout FILENAME output FASTQ file for subsamples\n" - " --randseed INT seed for PRNG, zero to use random data source (0)\n" - " --relabel STRING relabel sequences with this prefix string\n" - " --relabel_keep keep the old label after the new when relabelling\n" - " --relabel_md5 relabel with md5 digest of normalized sequence\n" - " --relabel_sha1 relabel with sha1 digest of normalized sequence\n" - " --sample_pct REAL sampling percentage between 0.0 and 100.0\n" - " --sample_size INT sampling size\n" - " --sizein consider abundance info from input, do not ignore\n" - " --sizeout update abundance information in output\n" - " --xsize strip abundance information in output\n" - ); - } -} - -void cmd_allpairs_global() -{ - /* check options */ - - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_samout)) - fatal("No output files specified"); - - if (! (opt_acceptall || ((opt_id >= 0.0) && (opt_id <= 1.0)))) - fatal("Specify either --acceptall or --id with an identity from 0.0 to 1.0"); - - allpairs_global(cmdline, progheader); -} - -void cmd_usearch_global() -{ - /* check options */ - - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_dbmatched) && (!opt_dbnotmatched) && - (!opt_samout)) - fatal("No output files specified"); - - if (!opt_db) - fatal("Database filename not specified with --db"); - - if ((opt_id < 0.0) || (opt_id > 1.0)) - fatal("Identity between 0.0 and 1.0 must be specified with --id"); - - usearch_global(cmdline, progheader); -} - -void cmd_search_exact() -{ - /* check options */ - - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_dbmatched) && (!opt_dbnotmatched) && - (!opt_samout)) - fatal("No output files specified"); - - if (!opt_db) - fatal("Database filename not specified with --db"); - - search_exact(cmdline, progheader); -} - -void cmd_sortbysize() -{ - if (!opt_output) - fatal("FASTA output file for sortbysize must be specified with --output"); - - sortbysize(); -} - -void cmd_sortbylength() -{ - if (!opt_output) - fatal("FASTA output file for sortbylength must be specified with --output"); - - sortbylength(); -} - -void cmd_derep() -{ - if ((!opt_output) && (!opt_uc)) - fatal("Output file for derepl_fulllength must be specified with --output or --uc"); - - if (opt_derep_fulllength) - derep_fulllength(); - else - { - if (opt_strand > 1) - fatal("Option '--strand both' not supported with --derep_prefix"); - else - derep_prefix(); - } -} - -void cmd_shuffle() -{ - if (!opt_output) - fatal("Output file for shuffling must be specified with --output"); - - shuffle(); -} - -void cmd_subsample() -{ - if ((!opt_fastaout) && (!opt_fastqout)) - fatal("Specifiy output files for subsampling with --fastaout and/or --fastqout"); - - if ((opt_sample_pct > 0) == (opt_sample_size > 0)) - fatal("Specify either --sample_pct or --sample_size, not both"); - - subsample(); -} - -void cmd_maskfasta() -{ - if (!opt_output) - fatal("Output file for masking must be specified with --output"); - - maskfasta(); -} - -void cmd_fastx_mask() -{ - if ((!opt_fastaout) && (!opt_fastqout)) - fatal("Specifiy output files for masking with --fastaout and/or --fastqout"); - - fastx_mask(); -} - -void cmd_none() -{ - if (! opt_quiet) - fprintf(stderr, - "For help, please enter: %s --help\n" - "\n" - "For further details, please see the manual by entering: man vsearch\n" - "\n" - "Example commands:\n" - "\n" - "vsearch --allpairs_global FILENAME --id 0.5 --alnout FILENAME\n" - "vsearch --cluster_fast FILENAME --id 0.97 --centroids FILENAME\n" - "vsearch --cluster_size FILENAME --id 0.97 --centroids FILENAME\n" - "vsearch --cluster_smallmem FILENAME --usersort --id 0.97 --centroids FILENAME\n" - "vsearch --derep_fulllength FILENAME --output FILENAME\n" - "vsearch --derep_prefix FILENAME --output FILENAME\n" - "vsearch --fastq_chars FILENAME\n" - "vsearch --fastq_convert FILENAME --fastqout FILENAME --fastq_ascii 64\n" - "vsearch --fastq_filter FILENAME --fastqout FILENAME --fastq_truncqual 20\n" - "vsearch --fastq_mergepairs FILENAME --reverse FILENAME --fastqout FILENAME\n" - "vsearch --fastq_stats FILENAME --log FILENAME\n" - "vsearch --fastx_mask FILENAME --fastaout FILENAME\n" - "vsearch --fastx_revcomp FILENAME --fastqout FILENAME\n" - "vsearch --fastx_subsample FILENAME --fastaout FILENAME --sample_pct 1\n" - "vsearch --search_exact FILENAME --db FILENAME --alnout FILENAME\n" - "vsearch --shuffle FILENAME --output FILENAME\n" - "vsearch --sortbylength FILENAME --output FILENAME\n" - "vsearch --sortbysize FILENAME --output FILENAME\n" - "vsearch --uchime_denovo FILENAME --nonchimeras FILENAME\n" - "vsearch --uchime_ref FILENAME --db FILENAME --nonchimeras FILENAME\n" - "vsearch --usearch_global FILENAME --db FILENAME --id 0.97 --alnout FILENAME\n" - "\n", - progname); -} - -void cmd_fastx_revcomp() -{ - if ((!opt_fastaout) && (!opt_fastqout)) - fatal("No output files specified"); - - fastx_revcomp(); -} - -void cmd_fastq_convert() -{ - if (! opt_fastqout) - fatal("No output file specified with --fastqout"); - - fastq_convert(); -} - -void cmd_cluster() -{ - if ((!opt_alnout) && (!opt_userout) && - (!opt_uc) && (!opt_blast6out) && - (!opt_matched) && (!opt_notmatched) && - (!opt_centroids) && (!opt_clusters) && - (!opt_consout) && (!opt_msaout) && - (!opt_samout) && (!opt_profile)) - fatal("No output files specified"); - - if ((opt_id < 0.0) || (opt_id > 1.0)) - fatal("Identity between 0.0 and 1.0 must be specified with --id"); - - if (opt_cluster_fast) - cluster_fast(cmdline, progheader); - else if (opt_cluster_smallmem) - cluster_smallmem(cmdline, progheader); - else if (opt_cluster_size) - cluster_size(cmdline, progheader); -} - -void cmd_uchime() -{ - if ((!opt_chimeras) && (!opt_nonchimeras) && - (!opt_uchimeout) && (!opt_uchimealns)) - fatal("No output files specified"); - - if (opt_uchime_ref && ! opt_db) - fatal("Database filename not specified with --db"); - - if (opt_xn <= 1.0) - fatal("Argument to --xn must be > 1"); - - if (opt_dn <= 0.0) - fatal("Argument to --dn must be > 0"); - - if (opt_mindiffs <= 0) - fatal("Argument to --mindiffs must be > 0"); - - if (opt_mindiv <= 0.0) - fatal("Argument to --mindiv must be > 0"); - - if (opt_minh <= 0.0) - fatal("Argument to --minh must be > 0"); - - if (opt_abskew <= 1.0) - fatal("Argument to --abskew must be > 1"); - - chimera(); -} - -void cmd_fastq_filter() -{ - if ((!opt_fastqout) && (!opt_fastaout) && - (!opt_fastqout_discarded) && (!opt_fastaout_discarded)) - fatal("No output files specified"); - fastq_filter(); -} - -void cmd_fastq_mergepairs() -{ - if (!opt_reverse) - fatal("No reverse reads file specified with --reverse"); - if ((!opt_fastqout) && - (!opt_fastaout) && - (!opt_fastqout_notmerged_fwd) && - (!opt_fastqout_notmerged_rev) && - (!opt_fastaout_notmerged_fwd) && - (!opt_fastaout_notmerged_rev) && - (!opt_eetabbedout)) - fatal("No output files specified"); - fastq_mergepairs(); -} - -void fillheader() -{ - int numProcessors = 1; -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - numProcessors = sysconf(_SC_NPROCESSORS_ONLN) -#else - SYSTEM_INFO sysinfo; - GetSystemInfo(&sysinfo); - numProcessors = sysinfo.dwNumberOfProcessors; -#endif - - snprintf(progheader, 80, - "%s v%s_%s, %.1fGB RAM, %ld cores", - PROG_NAME, PROG_VERSION, PROG_ARCH, - arch_get_memtotal() / 1024.0 / 1024.0 / 1024.0, - numProcessors); -} - -void getentirecommandline(int argc, char** argv) -{ - int len = 0; - for (int i=0; i, - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ -#include -#include -#include -#include -#include -#include - - -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - - -#ifdef HAVE_CONFIG_H -#include "config.h" -#endif - -#ifdef __SSE2__ -#include -#endif - -#ifdef __SSSE3__ -#include -#define SSSE3 -#endif - -#ifdef HAVE_ZLIB_H -#include -#endif - -#ifdef HAVE_BZLIB_H -#include -#endif - -#include "dynlibs.h" -#include "city.h" -#include "citycrc.h" -#include "md5.h" -#include "sha1.h" -#include "util.h" -#include "xstring.h" -#include "align_simd.h" -#include "maps.h" -#include "arch.h" -#include "abundance.h" -#include "db.h" -#include "align.h" -#include "unique.h" -#include "bitmap.h" -#include "dbindex.h" -#include "minheap.h" -#include "search.h" -#include "linmemalign.h" -#include "searchcore.h" -#include "showalign.h" -#include "userfields.h" -#include "results.h" -#include "sortbysize.h" -#include "sortbylength.h" -#include "derep.h" -#include "shuffle.h" -#include "mask.h" -#include "cluster.h" -#include "msa.h" -#include "chimera.h" -#include "cpu.h" -#include "allpairs.h" -#include "subsample.h" -#include "fasta.h" -#include "fastq.h" -#include "fastx.h" -#include "fastqops.h" -#include "dbhash.h" -#include "searchexact.h" -#include "mergepairs.h" - -//vsearch definitions - -#define PROG_NAME "vsearch" //PACKAGE -#define PROG_VERSION "1.9.10" //PACKAGE_VERSION -/* Define to the address where bug reports for this package should be sent. */ -#define PACKAGE_BUGREPORT "torognes@ifi.uio.no" - - -#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) - -#include -#include -#include -#include -#include -#include -#include -#include - -/* Define to 1 if you have the header file. */ -#define HAVE_SYS_STAT_H 1 - -/* Define to 1 if you have the header file. */ -#define HAVE_SYS_TIME_H 1 - -/* Define to 1 if you have the header file. */ -#define HAVE_SYS_TYPES_H 1 - -/* Define to 1 if you have the header file. */ -#define HAVE_UNISTD_H 1 - - -#if defined (__APPLE__) || (__MACH__) -#define PROG_ARCH "osx_x86_64" -#include -#else -#define PROG_ARCH "linux_x86_64" -#include -#endif -#else -#define PROG_ARCH "Windows_x86_64" -#include -#include -#include -#endif - - - -/* options */ - -extern bool opt_clusterout_id; -extern bool opt_clusterout_sort; -extern bool opt_eeout; -extern bool opt_fastq_allowmergestagger; -extern bool opt_fastq_eeout; -extern bool opt_fastq_nostagger; -extern bool opt_quiet; -extern bool opt_relabel_keep; -extern bool opt_relabel_md5; -extern bool opt_relabel_sha1; -extern bool opt_samheader; -extern bool opt_sizeorder; -extern bool opt_xsize; -extern char * opt_allpairs_global; -extern char * opt_alnout; -extern char * opt_blast6out; -extern char * opt_borderline; -extern char * opt_centroids; -extern char * opt_chimeras; -extern char * opt_cluster_fast; -extern char * opt_cluster_size; -extern char * opt_cluster_smallmem; -extern char * opt_clusters; -extern char * opt_consout; -extern char * opt_db; -extern char * opt_dbmatched; -extern char * opt_dbnotmatched; -extern char * opt_derep_fulllength; -extern char * opt_derep_prefix; -extern char * opt_eetabbedout; -extern char * opt_fastaout_notmerged_fwd; -extern char * opt_fastaout_notmerged_rev; -extern char * opt_fastaout; -extern char * opt_fastaout_discarded; -extern char * opt_fastapairs; -extern char * opt_fastq_chars; -extern char * opt_fastq_convert; -extern char * opt_fastq_filter; -extern char * opt_fastq_mergepairs; -extern char * opt_fastqout_notmerged_fwd; -extern char * opt_fastqout_notmerged_rev; -extern char * opt_fastq_stats; -extern char * opt_fastqout; -extern char * opt_fastqout_discarded; -extern char * opt_fastx_mask; -extern char * opt_fastx_revcomp; -extern char * opt_fastx_subsample; -extern char * opt_label_suffix; -extern char * opt_log; -extern char * opt_maskfasta; -extern char * opt_matched; -extern char * opt_msaout; -extern char * opt_nonchimeras; -extern char * opt_notmatched; -extern char * opt_output; -extern char * opt_pattern; -extern char * opt_profile; -extern char * opt_relabel; -extern char * opt_reverse; -extern char * opt_samout; -extern char * opt_search_exact; -extern char * opt_shuffle; -extern char * opt_sortbylength; -extern char * opt_sortbysize; -extern char * opt_uc; -extern char * opt_uchime_denovo; -extern char * opt_uchime_ref; -extern char * opt_uchimealns; -extern char * opt_uchimeout; -extern char * opt_usearch_global; -extern char * opt_userout; -extern double opt_abskew; -extern double opt_dn; -extern double opt_fastq_maxee; -extern double opt_fastq_maxee_rate; -extern double opt_id; -extern double opt_max_unmasked_pct; -extern double opt_maxid; -extern double opt_maxqt; -extern double opt_maxsizeratio; -extern double opt_maxsl; -extern double opt_mid; -extern double opt_min_unmasked_pct; -extern double opt_mindiv; -extern double opt_minh; -extern double opt_minqt; -extern double opt_minsizeratio; -extern double opt_minsl; -extern double opt_query_cov; -extern double opt_sample_pct; -extern double opt_target_cov; -extern double opt_weak_id; -extern double opt_xn; -extern int opt_acceptall; -extern int opt_alignwidth; -extern int opt_cons_truncate; -extern int opt_gap_extension_query_interior; -extern int opt_gap_extension_query_left; -extern int opt_gap_extension_query_right; -extern int opt_gap_extension_target_interior; -extern int opt_gap_extension_target_left; -extern int opt_gap_extension_target_right; -extern int opt_gap_open_query_interior; -extern int opt_gap_open_query_left; -extern int opt_gap_open_query_right; -extern int opt_gap_open_target_interior; -extern int opt_gap_open_target_left; -extern int opt_gap_open_target_right; -extern int opt_help; -extern int opt_mindiffs; -extern int opt_slots; -extern int opt_uchimeout5; -extern int opt_usersort; -extern int opt_version; -extern long opt_dbmask; -extern long opt_fasta_width; -extern long opt_fastq_ascii; -extern long opt_fastq_asciiout; -extern long opt_fastq_maxdiffs; -extern long opt_fastq_maxmergelen; -extern long opt_fastq_maxns; -extern long opt_fastq_minlen; -extern long opt_fastq_minmergelen; -extern long opt_fastq_minovlen; -extern long opt_fastq_qmax; -extern long opt_fastq_qmaxout; -extern long opt_fastq_qmin; -extern long opt_fastq_qminout; -extern long opt_fastq_stripleft; -extern long opt_fastq_tail; -extern long opt_fastq_trunclen; -extern long opt_fastq_truncqual; -extern long opt_fulldp; -extern long opt_hardmask; -extern long opt_iddef; -extern long opt_idprefix; -extern long opt_idsuffix; -extern long opt_leftjust; -extern long opt_match; -extern long opt_maxaccepts; -extern long opt_maxdiffs; -extern long opt_maxgaps; -extern long opt_maxhits; -extern long opt_maxqsize; -extern long opt_maxrejects; -extern long opt_maxseqlength; -extern long opt_maxsize; -extern long opt_maxsubs; -extern long opt_maxuniquesize; -extern long opt_mincols; -extern long opt_minseqlength; -extern long opt_minsize; -extern long opt_mintsize; -extern long opt_minuniquesize; -extern long opt_minwordmatches; -extern long opt_mismatch; -extern long opt_notrunclabels; -extern long opt_output_no_hits; -extern long opt_qmask; -extern long opt_randseed; -extern long opt_rightjust; -extern long opt_rowlen; -extern long opt_sample_size; -extern long opt_self; -extern long opt_selfid; -extern long opt_sizein; -extern long opt_sizeout; -extern long opt_strand; -extern long opt_threads; -extern long opt_top_hits_only; -extern long opt_topn; -extern long opt_uc_allhits; -extern long opt_wordlength; - -extern long mmx_present; -extern long sse_present; -extern long sse2_present; -extern long sse3_present; -extern long ssse3_present; -extern long sse41_present; -extern long sse42_present; -extern long popcnt_present; -extern long avx_present; -extern long avx2_present; - -extern FILE * fp_log; - -extern abundance_t * global_abundance; diff --git a/source/vsearch_src/xstring.h b/source/vsearch_src/xstring.h deleted file mode 100755 index 5b1d310e..00000000 --- a/source/vsearch_src/xstring.h +++ /dev/null @@ -1,143 +0,0 @@ -/* - - VSEARCH: a versatile open source tool for metagenomics - - Copyright (C) 2014-2015, Torbjorn Rognes, Frederic Mahe and Tomas Flouri - All rights reserved. - - Contact: Torbjorn Rognes , - Department of Informatics, University of Oslo, - PO Box 1080 Blindern, NO-0316 Oslo, Norway - - This software is dual-licensed and available under a choice - of one of two licenses, either under the terms of the GNU - General Public License version 3 or the BSD 2-Clause License. - - - GNU General Public License version 3 - - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program. If not, see . - - - The BSD 2-Clause License - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. - - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS - FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, - BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; - LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER - CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT - LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN - ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - -*/ - -static char empty_string[1] = ""; - -class xstring -{ - char * string; - size_t length; - size_t alloc; - - public: - - xstring() - { - length = 0; - alloc = 0; - string = 0; - } - - ~xstring() - { - if (alloc > 0) - free(string); - alloc = 0; - string = 0; - length = 0; - } - - void empty() - { - length = 0; - } - - char * get_string() - { - if (length > 0) - return string; - else - return empty_string; - } - - size_t get_length() - { - return length; - } - - void add_c(char c) - { - size_t needed = 1; - if (length + needed + 1 > alloc) - { - alloc = length + needed + 1; - string = (char*) xrealloc(string, alloc); - } - string[length] = c; - length += 1; - string[length] = 0; - } - - void add_d(int d) - { - int needed = snprintf(0, 0, "%d", d); - if (needed < 0) - fatal("snprintf failed"); - if (length + needed + 1 > alloc) - { - alloc = length + needed + 1; - string = (char*) xrealloc(string, alloc); - } - sprintf(string + length, "%d", d); - length += needed; - } - - void add_s(char * s) - { - size_t needed = strlen(s); - if (length + needed + 1 > alloc) - { - alloc = length + needed + 1; - string = (char*) xrealloc(string, alloc); - } - strcpy(string + length, s); - length += needed; - } -}; diff --git a/source/vsearchfileparser.cpp b/source/vsearchfileparser.cpp new file mode 100644 index 00000000..d938fc06 --- /dev/null +++ b/source/vsearchfileparser.cpp @@ -0,0 +1,255 @@ +// +// vsearchfileparser.cpp +// Mothur +// +// Created by Sarah Westcott on 10/13/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#include "vsearchfileparser.h" +#include "deconvolutecommand.h" +#include "sequence.hpp" +#include "rabundvector.hpp" +#include "sabundvector.hpp" + +/***********************************************************************/ +VsearchFileParser::VsearchFileParser(string f){ + try { + m = MothurOut::getInstance(); + fastafile = f; + namefile = ""; + countfile = ""; + format = "count"; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); + exit(1); + } +} +/***********************************************************************/ +VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string forma) { + try { + m = MothurOut::getInstance(); + fastafile = f; + namefile = ""; + countfile = ""; + format = forma; + + if (format == "name") { namefile = nameOrCount; } + else if (format == "count") { countfile = nameOrCount; } + else { m->mothurOut("[ERROR]: " + format + " is not a valid file format for the VsearchFileParser, quitting.\n"); m->control_pressed = true; } + + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); + exit(1); + } +} +/***********************************************************************/ +string VsearchFileParser::getVsearchFile() { + try { + //Run unique.seqs on the data if a name or count file is not given + if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } + else if (namefile != "") { counts = m->readNames(namefile); } + + if (countfile != "") { CountTable countTable; countTable.readTable(countfile, false, false); counts = countTable.getNameMap(); } + + if (m->control_pressed) { return 0; } + + //Remove gap characters from each sequence if needed + //Append the number of sequences that each unique sequence represents to the end of the fasta file name + //Sorts by abundance + string vsearchFastafile = createVsearchFasta(fastafile); + + return vsearchFastafile; + + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "getVsearchFile"); + exit(1); + } +} +/**********************************************************************/ + +string VsearchFileParser::createVsearchFasta(string inputFile){ + try { + string vsearchFasta = m->getSimpleName(fastafile) + ".sorted.fasta.temp"; + + vector seqs; + map::iterator it; + + ifstream in; + m->openInputFile(inputFile, in); + + while (!in.eof()) { + + if (m->control_pressed) { in.close(); return vsearchFasta; } + + Sequence seq(in); m->gobble(in); + + it = counts.find(seq.getName()); + if (it == counts.end()) { + m->mothurOut("[ERROR]: " + seq.getName() + " is not in your name or countfile, quitting.\n"); m->control_pressed = true; + }else { + seqPriorityNode temp(it->second, seq.getUnaligned(), it->first); + seqs.push_back(temp); + } + + } + in.close(); + + m->printVsearchFile(seqs, vsearchFasta); + + return vsearchFasta; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "createVsearchFasta"); + exit(1); + } +} +/*************************************************************************/ + +string VsearchFileParser::getNamesFile(string& inputFile){ + try { + string nameFile = ""; + + m->mothurOutEndLine(); m->mothurOut("No namesfile given, running unique.seqs command to generate one."); m->mothurOutEndLine(); m->mothurOutEndLine(); + + //use unique.seqs to create new name and fastafile + string inputString = "fasta=" + inputFile + ", format=count"; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + m->mothurOut("Running command: unique.seqs(" + inputString + ")"); m->mothurOutEndLine(); + m->mothurCalling = true; + + Command* uniqueCommand = new DeconvoluteCommand(inputString); + uniqueCommand->execute(); + + map > filenames = uniqueCommand->getOutputFiles(); + + delete uniqueCommand; + m->mothurCalling = false; + m->mothurOut("/******************************************/"); m->mothurOutEndLine(); + + countfile = filenames["count"][0]; + fastafile = filenames["fasta"][0]; + + return nameFile; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "getNamesFile"); + exit(1); + } +} +/*************************************************************************/ +//S 1 275 * * * * * GQY1XT001C44N8/ab=3677/ * +int VsearchFileParser::createListFile(string inputFile, string listFile, string sabundFile, string rabundFile, int numBins, string label){ + try { + map::iterator itName; + if (format == "name") { counts.clear(); m->readNames(namefile, nameMap); } + + ifstream in; + m->openInputFile(inputFile, in); + + ListVector list(numBins); list.setLabel(label); + + int clusterNumber; + string seqName, recordType, length, percentIdentity, strand, notUsed1, notUsed2, compressedAlignment, repSequence; + + while(!in.eof()) { + if (m->control_pressed) { break; } + + in >> recordType >> clusterNumber >> length >> percentIdentity >> strand >> notUsed1 >> notUsed2 >> compressedAlignment >> seqName >> repSequence; m->gobble(in); + + seqName = removeAbundances(seqName); + + if (format == "name") { + itName = nameMap.find(seqName); + if (itName == nameMap.end()) { m->mothurOut("[ERROR]: " + seqName + " is not in your name file. Parsing error???\n"); m->control_pressed = true; } + else{ seqName = itName->second; } + } + + string bin = list.get(clusterNumber); + if (bin == "") { bin = seqName; } + else { bin += ',' + seqName; } + list.set(clusterNumber, bin); + + } + in.close(); + + ofstream out; + m->openOutputFile(listFile, out); + list.printHeaders(out); + + if (countfile != "") { + list.print(out, counts); + }else { + list.print(out); + + if ((sabundFile != "") && (rabundFile != "")){ + //print sabund and rabund + ofstream sabund, rabund; + m->openOutputFile(sabundFile, sabund); + m->openOutputFile(rabundFile, rabund); + + list.getRAbundVector().print(rabund); rabund.close(); + list.getSAbundVector().print(sabund); sabund.close(); + } + } + out.close(); + + return 0; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "createListFile"); + exit(1); + } +} +/*************************************************************************/ +//GQY1XT001C44N8/ab=3677/ * +string VsearchFileParser::removeAbundances(string seqName){ + try { + + int pos = seqName.find_last_of("/", seqName.length()-2); //don't look at the last / + if (pos != string::npos) { seqName = seqName.substr(0, pos); } + + return seqName; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "removeAbundances"); + exit(1); + } +} +/*************************************************************************/ +//GQY1XT001C44N8/ab=3677/ * +int VsearchFileParser::getNumBins(string logfile){ + try { + + int numBins = 0; + + ifstream in; + m->openInputFile(logfile, in); + + string line; + while(!in.eof()) { + if (m->control_pressed) { break; } + + line = m->getline(in); m->gobble(in); + + int pos = line.find("Clusters:"); + if (pos != string::npos) { + vector pieces = m->splitWhiteSpace(line); + if (pieces.size() > 1) { m->mothurConvert(pieces[1], numBins); } + break; + } + } + in.close(); + + return numBins; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "getNumBins"); + exit(1); + } +} +/***********************************************************************/ + diff --git a/source/vsearchfileparser.h b/source/vsearchfileparser.h new file mode 100644 index 00000000..551ee454 --- /dev/null +++ b/source/vsearchfileparser.h @@ -0,0 +1,44 @@ +// +// vsearchfileparser.h +// Mothur +// +// Created by Sarah Westcott on 10/13/15. +// Copyright (c) 2015 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__vsearchfileparser__ +#define __Mothur__vsearchfileparser__ + +#include "mothurout.h" + + +/**************************************************************************************************/ + +class VsearchFileParser { + + public: + VsearchFileParser(string f); //fastafile + VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") + ~VsearchFileParser(){} + + string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. + string getCountFile(); //returns count filename. If no names or count file is given, then a count file is generated. + int createListFile(string uc, string listfile, string, string, int numbins, string label); //takes vsearch output and creates list file + int getNumBins(string logfile); + + private: + MothurOut* m; + map nameMap; + map counts; + string fastafile, namefile, countfile, format; + string getNamesFile(string& inputFile); + string createVsearchFasta(string); + string removeAbundances(string seqName); + + +}; + +/**************************************************************************************************/ + + +#endif /* defined(__Mothur__vsearchfileparser__) */ From f3de1a5d2eb84d9fa6d84f5fb87e0a0c26371b64 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 8 Feb 2016 16:50:10 -0500 Subject: [PATCH 101/135] WIP cluster.split command agc dgc #169 --- source/commands/clustersplitcommand.cpp | 162 +++++++++++++++++++++++++------- source/commands/clustersplitcommand.h | 3 +- 2 files changed, 129 insertions(+), 36 deletions(-) diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp index 8b38a277..c0ec35d2 100644 --- a/source/commands/clustersplitcommand.cpp +++ b/source/commands/clustersplitcommand.cpp @@ -8,8 +8,8 @@ */ #include "clustersplitcommand.h" -#include "vsearch.h" #include "vsearchfileparser.h" +#include "systemcommand.h" //********************************************************************************************************************** vector ClusterSplitCommand::setParameters(){ @@ -472,6 +472,7 @@ int ClusterSplitCommand::execute(){ else if (splitmethod == "classify") { split = new SplitMatrix(distfile, namefile, countfile, taxFile, taxLevelCutoff, splitmethod, large); } else if (splitmethod == "fasta") { if ((method == "agc") || (method == "dgc")) { + if (!findVsearch()) { m->mothurOut("[ERROR] cannot find vsearch executable, aborting.\n"); return 0; } split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir, "fasta"); }else{ split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir, "distance"); @@ -1053,7 +1054,6 @@ vector ClusterSplitCommand::createProcesses(vector< map vector ClusterSplitCommand::cluster(vector< map > distNames, set& labels){ try { - vector listFileNames; double smallestCutoff = cutoff; @@ -1400,19 +1400,31 @@ int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, //vsearch --maxaccepts 16 --usersort --id 0.97 --minseqlength 30 --wordlength 8 --uc $ROOT.clustered.uc --cluster_smallmem $ROOT.sorted.fna --maxrejects 64 --strand both --log $ROOT.clustered.log --sizeorder - int numArgs = 11; if (method == "dgc") { numArgs = 10; } //no sizeorder for dgc - char** vsearchParameters; - vsearchParameters = new char*[numArgs]; + ucClusteredFile = m->getFullPathName(ucClusteredFile); + inputFile = m->getFullPathName(inputFile); + logfile = m->getFullPathName(logfile); + + //to allow for spaces in the path + ucClusteredFile = "\"" + ucClusteredFile + "\""; + inputFile = "\"" + inputFile + "\""; + logfile = "\"" + logfile + "\""; + + vector cPara; + + string vsearchCommand = vsearchLocation; + vsearchCommand = "\"" + vsearchCommand + "\" "; - vsearchParameters[0] = new char[8]; - *vsearchParameters[0] = '\0'; strncat(vsearchParameters[0], "vsearch", 7); + vector vsearchParameters; + char* vsearchParameter = new char[vsearchCommand.length()+1]; vsearchParameter[0] = '\0'; strncat(vsearchParameter, vsearchCommand.c_str(), vsearchCommand.length()); + vsearchParameters.push_back(vsearchParameter); - int parameterCount = 1; //--maxaccepts=16 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxaccepts=16", 15); parameterCount++; + char* maxaccepts = new char[16]; maxaccepts[0] = '\0'; strncat(maxaccepts, "--maxaccepts=16", 15); + vsearchParameters.push_back(maxaccepts); //--usersort - vsearchParameters[parameterCount] = new char[11]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--usersort", 10); parameterCount++; + char* usersort = new char[11]; usersort[0] = '\0'; strncat(usersort, "--usersort", 10); + vsearchParameters.push_back(usersort); //--id=0.97 cutoff = abs(1.0 - cutoff); string cutoffString = toString(cutoff); @@ -1420,54 +1432,70 @@ int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, else if (cutoffString.length() < 4) { for (int i = cutoffString.length(); i < 4; i++) { cutoffString += "0"; } } cutoffString = "--id=" + cutoffString; - vsearchParameters[parameterCount] = new char[cutoffString.length()+1]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], cutoffString.c_str(), cutoffString.length()); parameterCount++; + char* cutoffParameter = new char[cutoffString.length()+1]; cutoffParameter[0] = '\0'; strncat(cutoffParameter, cutoffString.c_str(), cutoffString.length()); + vsearchParameters.push_back(cutoffParameter); //--minseqlength=30 - vsearchParameters[parameterCount] = new char[18]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--minseqlength=30", 17); parameterCount++; + char* minseqlength = new char[18]; minseqlength[0] = '\0'; strncat(minseqlength, "--minseqlength=30", 17); + vsearchParameters.push_back(minseqlength); //--wordlength=8 - vsearchParameters[parameterCount] = new char[15]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--wordlength=8", 14); parameterCount++; + char* wordlength = new char[15]; wordlength[0] = '\0'; strncat(wordlength, "--wordlength=8", 14); + vsearchParameters.push_back(wordlength); //--uc=$ROOT.clustered.uc string tempIn = "--uc=" + ucClusteredFile; - vsearchParameters[parameterCount] = new char[tempIn.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempIn.c_str(), tempIn.length()); - parameterCount++; + char* uc = new char[tempIn.length()+1]; uc[0] = '\0'; strncat(uc, tempIn.c_str(), tempIn.length()); + vsearchParameters.push_back(uc); //--cluster_smallmem $ROOT.sorted.fna string tempSorted = "--cluster_smallmem=" + inputFile; - vsearchParameters[parameterCount] = new char[tempSorted.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempSorted.c_str(), tempSorted.length()); - parameterCount++; + char* cluster_smallmen = new char[tempSorted.length()+1]; cluster_smallmen[0] = '\0'; strncat(cluster_smallmen, tempSorted.c_str(), tempSorted.length()); + vsearchParameters.push_back(cluster_smallmen); //--maxrejects=64 - vsearchParameters[parameterCount] = new char[16]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--maxrejects=64", 15); parameterCount++; + char* maxrejects = new char[16]; maxrejects[0] = '\0'; strncat(maxrejects, "--maxrejects=64", 15); + vsearchParameters.push_back(maxrejects); //--strand=both - vsearchParameters[parameterCount] = new char[14]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--strand=both", 13); parameterCount++; + char* strand = new char[14]; strand[0] = '\0'; strncat(strand, "--strand=both", 13); + vsearchParameters.push_back(strand); //--log=$ROOT.clustered.log string tempLog = "--log=" + logfile; - vsearchParameters[parameterCount] = new char[tempLog.length()+1]; - *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], tempLog.c_str(), tempLog.length()); - parameterCount++; - + char* log = new char[tempLog.length()+1]; log[0] = '\0'; strncat(log, tempLog.c_str(), tempLog.length()); + vsearchParameters.push_back(log); if (method == "agc") { //--sizeorder - vsearchParameters[parameterCount] = new char[12]; *vsearchParameters[parameterCount] = '\0'; strncat(vsearchParameters[parameterCount], "--sizeorder", 11); parameterCount++; + char* sizeorder = new char[12]; sizeorder[0] = '\0'; strncat(sizeorder, "--sizeorder", 11); + vsearchParameters.push_back(sizeorder); + delete sizeorder; } - if (m->debug) { for(int i = 0; i < numArgs; i++) { cout << vsearchParameters[i]; } cout << endl; } + if (m->debug) { for(int i = 0; i < vsearchParameters.size(); i++) { cout << vsearchParameters[i]; } cout << endl; } + + string commandString = ""; + for (int i = 0; i < vsearchParameters.size(); i++) { commandString += toString(vsearchParameters[i]) + " "; } - errno = 0; - vsearch_main(numArgs, vsearchParameters); + //cout << "commandString = " << commandString << endl; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) +#else + commandString = "\"" + commandString + "\""; +#endif + if (m->debug) { m->mothurOut("[DEBUG]: vsearch cluster command = " + commandString + ".\n"); } + system(commandString.c_str()); //free memory - for(int i = 0; i < numArgs; i++) { delete[] vsearchParameters[i]; } - delete[] vsearchParameters; + for(int i = 0; i < vsearchParameters.size(); i++) { delete vsearchParameters[i]; } + + //remove "" from filenames + ucClusteredFile = ucClusteredFile.substr(1, ucClusteredFile.length()-2); + inputFile = inputFile.substr(1, inputFile.length()-2); + logfile = logfile.substr(1, logfile.length()-2); return 0; + } catch(exception& e) { m->errorOut(e, "ClusterSplitCommand", "vsearchDriver"); @@ -1522,7 +1550,7 @@ int ClusterSplitCommand::createRabund(CountTable*& ct, ListVector*& list, RAbund return 0; } catch(exception& e) { - m->errorOut(e, "ClusterCommand", "createRabund"); + m->errorOut(e, "ClusterSplitCommand", "createRabund"); exit(1); } @@ -1551,7 +1579,7 @@ string ClusterSplitCommand::printFile(string singleton, vector< maperrorOut(e, "ClusterCommand", "printFile"); + m->errorOut(e, "ClusterSplitCommand", "printFile"); exit(1); } @@ -1618,7 +1646,7 @@ string ClusterSplitCommand::readFile(vector< map >& distName){ return singleton; } catch(exception& e) { - m->errorOut(e, "ClusterCommand", "readFile"); + m->errorOut(e, "ClusterSplitCommand", "readFile"); exit(1); } @@ -1646,7 +1674,71 @@ int ClusterSplitCommand::getLabels(string file, set& listLabels){ return 0; } catch(exception& e) { - m->errorOut(e, "ClusterCommand", "getLabels"); + m->errorOut(e, "ClusterSplitCommand", "getLabels"); + exit(1); + } + +} +//********************************************************************************************************************** +bool ClusterSplitCommand::findVsearch(){ + try { + + abort = false; + + //look for uchime exe + string path = m->argv; + string tempPath = path; + for (int i = 0; i < path.length(); i++) { tempPath[i] = tolower(path[i]); } + path = path.substr(0, (tempPath.find_last_of('m'))); + + string vsearchCommand; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + vsearchCommand = path + "vsearch"; // format the database, -o option gives us the ability + if (m->debug) { + m->mothurOut("[DEBUG]: vsearch location using \"which vsearch\" = "); + Command* newCommand = new SystemCommand("which vsearch"); m->mothurOutEndLine(); + newCommand->execute(); + delete newCommand; + m->mothurOut("[DEBUG]: Mothur's location using \"which mothur\" = "); + newCommand = new SystemCommand("which mothur"); m->mothurOutEndLine(); + newCommand->execute(); + delete newCommand; + } +#else + vsearchCommand = path + "vsearch.exe"; +#endif + + //test to make sure uchime exists + ifstream in; + vsearchCommand = m->getFullPathName(vsearchCommand); + int ableToOpen = m->openInputFile(vsearchCommand, in, "no error"); in.close(); + if(ableToOpen == 1) { + m->mothurOut(vsearchCommand + " file does not exist. Checking path... \n"); + //check to see if uchime is in the path?? + + string uLocation = m->findProgramPath("vsearch"); + + + ifstream in2; +#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) + ableToOpen = m->openInputFile(uLocation, in2, "no error"); in2.close(); +#else + ableToOpen = m->openInputFile((uLocation + ".exe"), in2, "no error"); in2.close(); +#endif + + if(ableToOpen == 1) { m->mothurOut("[ERROR]: " + uLocation + " file does not exist. mothur requires the vsearch executable."); m->mothurOutEndLine(); abort = true; } + else { m->mothurOut("Found vsearch in your path, using " + uLocation + "\n");vsearchLocation = uLocation; } + }else { vsearchLocation = vsearchCommand; } + + vsearchLocation = m->getFullPathName(vsearchLocation); + + if (!abort) { return true; } + + return false; + + } + catch(exception& e) { + m->errorOut(e, "ClusterSplitCommand", "findVsearch"); exit(1); } diff --git a/source/commands/clustersplitcommand.h b/source/commands/clustersplitcommand.h index c42c505d..0ea6b852 100644 --- a/source/commands/clustersplitcommand.h +++ b/source/commands/clustersplitcommand.h @@ -48,7 +48,7 @@ class ClusterSplitCommand : public Command { vector processIDS; //processid vector outputNames; - string file, method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, countfile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile, inputDir; + string file, method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, countfile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile, inputDir, vsearchLocation; double cutoff, splitcutoff; int precision, length, processors, taxLevelCutoff; bool print_start, abort, hard, large, classic, runCluster, deleteFiles, isList; @@ -67,6 +67,7 @@ class ClusterSplitCommand : public Command { string readFile(vector< map >&); string printFile(string, vector< map >&); int getLabels(string, set& listLabels); + bool findVsearch(); int vsearchDriver(string, string, string); string runVsearchCluster(string, string, set&, double&); }; From 1049f39c0127e5b7ff9e6a1e707f49d346258c6f Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 9 Feb 2016 14:25:09 -0500 Subject: [PATCH 102/135] Adds agc and dgc to cluster.split #169 --- source/commands/clustercommand.cpp | 3 +-- source/commands/clustersplitcommand.cpp | 36 +++++++++++++++++++++------------ source/commands/clustersplitcommand.h | 4 ++-- 3 files changed, 26 insertions(+), 17 deletions(-) diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index 004b3071..f5bee32e 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -552,7 +552,6 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri //--sizeorder char* sizeorder = new char[12]; sizeorder[0] = '\0'; strncat(sizeorder, "--sizeorder", 11); vsearchParameters.push_back(sizeorder); - delete sizeorder; } if (m->debug) { for(int i = 0; i < vsearchParameters.size(); i++) { cout << vsearchParameters[i]; } cout << endl; } @@ -569,7 +568,7 @@ int ClusterCommand::vsearchDriver(string inputFile, string ucClusteredFile, stri system(commandString.c_str()); //free memory - // for(int i = 0; i < vsearchParameters.size(); i++) { delete vsearchParameters[i]; } + for(int i = 0; i < vsearchParameters.size(); i++) { delete vsearchParameters[i]; } //remove "" from filenames ucClusteredFile = ucClusteredFile.substr(1, ucClusteredFile.length()-2); diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp index c0ec35d2..51bd1bb9 100644 --- a/source/commands/clustersplitcommand.cpp +++ b/source/commands/clustersplitcommand.cpp @@ -346,8 +346,9 @@ ClusterSplitCommand::ClusterSplitCommand(string option) { //not using file option and don't have fasta method with classic if (((splitmethod != "fasta") && classic) && (file == "")) { m->mothurOut("[ERROR]: splitmethod must be fasta to use cluster.classic, or you must use the file option.\n"); abort=true; } - - temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "0.25"; } + + cutoffNotSet = false; + temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { cutoffNotSet = true; temp = "0.25"; } m->mothurConvert(temp, cutoff); cutoff += (5 / (precision * 10.0)); @@ -528,7 +529,7 @@ int ClusterSplitCommand::execute(){ if (m->control_pressed) { for (int i = 0; i < listFileNames.size(); i++) { m->mothurRemove(listFileNames[i]); } return 0; } - if (saveCutoff != cutoff) { m->mothurOut("Cutoff was " + toString(saveCutoff) + " changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); } + if (saveCutoff != cutoff) { m->mothurOut("\nCutoff was " + toString(saveCutoff) + " changed cutoff to " + toString(cutoff)); m->mothurOutEndLine(); } m->mothurOut("It took " + toString(time(NULL) - estart) + " seconds to cluster"); m->mothurOutEndLine(); @@ -584,7 +585,6 @@ int ClusterSplitCommand::execute(){ //********************************************************************************************************************** map ClusterSplitCommand::completeListFile(vector listNames, string singleton, set& userLabels, ListVector*& listSingle){ try { - map labelBin; vector orderFloat; int numSingleBins; @@ -1076,9 +1076,8 @@ vector ClusterSplitCommand::cluster(vector< map > distNa } cutoff = smallestCutoff; - + return listFileNames; - } catch(exception& e) { m->errorOut(e, "ClusterSplitCommand", "cluster"); @@ -1201,7 +1200,7 @@ string ClusterSplitCommand::clusterFile(string thisDistFile, string thisNamefile try { string listFileName = ""; - if ((method == "agc") || (method == "dgc")) { runVsearchCluster(thisDistFile, thisNamefile, labels, smallestCutoff); } + if ((method == "agc") || (method == "dgc")) { listFileName = runVsearchCluster(thisDistFile, thisNamefile, labels, smallestCutoff); } else { Cluster* cluster = NULL; @@ -1367,7 +1366,7 @@ string ClusterSplitCommand::runVsearchCluster(string thisDistFile, string thisNa //Run vsearch string ucVsearchFile = m->getSimpleName(vsearchFastafile) + ".clustered.uc"; string logfile = m->getSimpleName(vsearchFastafile) + ".clustered.log"; - vsearchDriver(vsearchFastafile, ucVsearchFile, logfile); + vsearchDriver(vsearchFastafile, ucVsearchFile, logfile, smallestCutoff); if (m->control_pressed) { m->mothurRemove(ucVsearchFile); m->mothurRemove(logfile); m->mothurRemove(vsearchFastafile); return 0; } @@ -1376,14 +1375,19 @@ string ClusterSplitCommand::runVsearchCluster(string thisDistFile, string thisNa string listFileName = outputDir + m->getRootName(m->getSimpleName(thisDistFile)) + tag + ".list"; //Convert outputted *.uc file into a list file - vParse->createListFile(ucVsearchFile, listFileName, "", "", vParse->getNumBins(logfile), toString(1.0-cutoff)); delete vParse; + vParse->createListFile(ucVsearchFile, listFileName, "", "", vParse->getNumBins(logfile), toString(cutoff)); delete vParse; //remove temp files m->mothurRemove(ucVsearchFile); m->mothurRemove(logfile); m->mothurRemove(vsearchFastafile); + if (deleteFiles) { + m->mothurRemove(thisDistFile); + m->mothurRemove(thisNamefile); + } + if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } return 0; } - labels.insert(toString(cutoff)); smallestCutoff = cutoff; + labels.insert(toString(cutoff)); return listFileName; } @@ -1394,7 +1398,7 @@ string ClusterSplitCommand::runVsearchCluster(string thisDistFile, string thisNa } //********************************************************************************************************************** -int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, string logfile){ +int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, string logfile, double cutoff){ try { //vsearch --maxaccepts 16 --usersort --id 0.97 --minseqlength 30 --wordlength 8 --uc $ROOT.clustered.uc --cluster_smallmem $ROOT.sorted.fna --maxrejects 64 --strand both --log $ROOT.clustered.log --sizeorder @@ -1470,7 +1474,6 @@ int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, //--sizeorder char* sizeorder = new char[12]; sizeorder[0] = '\0'; strncat(sizeorder, "--sizeorder", 11); vsearchParameters.push_back(sizeorder); - delete sizeorder; } if (m->debug) { for(int i = 0; i < vsearchParameters.size(); i++) { cout << vsearchParameters[i]; } cout << endl; } @@ -1483,7 +1486,8 @@ int ClusterSplitCommand::vsearchDriver(string inputFile, string ucClusteredFile, #else commandString = "\"" + commandString + "\""; #endif - if (m->debug) { m->mothurOut("[DEBUG]: vsearch cluster command = " + commandString + ".\n"); } + if (m->debug) { m->mothurOut("[DEBUG]: vsearch cluster command = " + commandString + ".\n"); } + system(commandString.c_str()); //free memory @@ -1685,6 +1689,8 @@ bool ClusterSplitCommand::findVsearch(){ abort = false; + if (cutoffNotSet) { m->mothurOut("\nYou did not set a cutoff, using 0.03.\n"); cutoff = 0.03; } + //look for uchime exe string path = m->argv; string tempPath = path; @@ -1732,6 +1738,10 @@ bool ClusterSplitCommand::findVsearch(){ vsearchLocation = m->getFullPathName(vsearchLocation); + if (m->debug) { + m->mothurOut("[DEBUG]: vsearch location using " + vsearchLocation + "\n"); + } + if (!abort) { return true; } return false; diff --git a/source/commands/clustersplitcommand.h b/source/commands/clustersplitcommand.h index 0ea6b852..811c27f9 100644 --- a/source/commands/clustersplitcommand.h +++ b/source/commands/clustersplitcommand.h @@ -51,7 +51,7 @@ class ClusterSplitCommand : public Command { string file, method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, countfile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile, inputDir, vsearchLocation; double cutoff, splitcutoff; int precision, length, processors, taxLevelCutoff; - bool print_start, abort, hard, large, classic, runCluster, deleteFiles, isList; + bool print_start, abort, hard, large, classic, runCluster, deleteFiles, isList, cutoffNotSet; time_t start; ofstream outList, outRabund, outSabund; @@ -68,7 +68,7 @@ class ClusterSplitCommand : public Command { string printFile(string, vector< map >&); int getLabels(string, set& listLabels); bool findVsearch(); - int vsearchDriver(string, string, string); + int vsearchDriver(string, string, string, double); string runVsearchCluster(string, string, set&, double&); }; From b6802a368b336f6c9708cc315be6fa41161f3490 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 9 Feb 2016 15:04:45 -0500 Subject: [PATCH 103/135] Resolving conflicts in #169 merge --- source/mothurout.h | 3 +++ 1 file changed, 3 insertions(+) diff --git a/source/mothurout.h b/source/mothurout.h index bc634538..8b3de543 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -170,6 +170,9 @@ class MothurOut { unsigned long long getRAMUsed(); unsigned long long getTotalRAM(); unsigned long get_phys_pages(); + string getStringFromVector(vector&, string); //creates string like "v[0], v[1], ... v[n]" where ', ' is string. + string getStringFromVector(vector&, string); //creates string like "v[0], v[1], ... v[n]" where ', ' is string. + string getStringFromVector(vector&, string); //creates string like "v[0], v[1], ... v[n]" where ', ' is string. //string manipulation void splitAtEquals(string&, string&); From 258d3c4b4cb8d96e43a7ff850bb5a496b16219c9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 9 Feb 2016 15:33:46 -0500 Subject: [PATCH 104/135] FIxes bug in fliter.seqs debug output --- source/commands/filterseqscommand.h | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/source/commands/filterseqscommand.h b/source/commands/filterseqscommand.h index 8daaa4a8..93e7aaa8 100644 --- a/source/commands/filterseqscommand.h +++ b/source/commands/filterseqscommand.h @@ -154,8 +154,8 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){ Sequence current(in); pDataArray->m->gobble(in); if (current.getName() != "") { - if (pDataArray->m->debug) { pDataArray->m->mothurOutJustToScreen("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); pDataArray->m->mothurOutEndLine();} - if (seq.getAligned().length() != pDataArray->alignmentLength) { pDataArray->m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); pDataArray->m->mothurOutEndLine(); error = true; if (!pDataArray->m->debug) { pDataArray->m->control_pressed = true; }else{ pDataArray->m->mothurOutJustToLog("[DEBUG]: " + seq.getName() + " length = " + toString(seq.getAligned().length())); pDataArray->m->mothurOutEndLine();} } + if (pDataArray->m->debug) { pDataArray->m->mothurOutJustToScreen("[DEBUG]: " + current.getName() + " length = " + toString(current.getAligned().length())); pDataArray->m->mothurOutEndLine();} + if (current.getAligned().length() != pDataArray->alignmentLength) { pDataArray->m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); pDataArray->m->mothurOutEndLine(); error = true; if (!pDataArray->m->debug) { pDataArray->m->control_pressed = true; }else{ pDataArray->m->mothurOutJustToLog("[DEBUG]: " + current.getName() + " length = " + toString(seq.getAligned().length())); pDataArray->m->mothurOutEndLine();} } if(pDataArray->trump != '*') { pDataArray->F.doTrump(current); } if(pDataArray->m->isTrue(pDataArray->vertical) || pDataArray->soft != 0) { pDataArray->F.getFreqs(current); } From eafae911fdb9b1402fe8526b6df38eb51f828f37 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 10:12:23 -0500 Subject: [PATCH 105/135] Globalizes inputDir for vsearch methods #169 --- source/commands/clustercommand.cpp | 2 +- source/commands/clustercommand.h | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/source/commands/clustercommand.cpp b/source/commands/clustercommand.cpp index f5bee32e..192e6672 100644 --- a/source/commands/clustercommand.cpp +++ b/source/commands/clustercommand.cpp @@ -133,7 +133,7 @@ ClusterCommand::ClusterCommand(string option) { //if the user changes the output directory command factory will send this info to us in the output parameter outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; } - string inputDir = validParameter.validFile(parameters, "inputdir", false); + inputDir = validParameter.validFile(parameters, "inputdir", false); if (inputDir == "not found"){ inputDir = ""; } else { string path; diff --git a/source/commands/clustercommand.h b/source/commands/clustercommand.h index 595c7a23..e55cf3d8 100644 --- a/source/commands/clustercommand.h +++ b/source/commands/clustercommand.h @@ -54,7 +54,7 @@ class ClusterCommand : public Command { bool abort, hard, sim; - string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile, vsearchLocation; + string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile, fastafile, inputDir, vsearchLocation; double cutoff; float adjust; string showabund, timing; From 1919138575597348102685019f0040e28f8b3677 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 10:13:44 -0500 Subject: [PATCH 106/135] Fixes windows compile errors --- source/commands/chimerauchimecommand.cpp | 6 +----- source/commands/filterseqscommand.h | 2 +- source/commands/makecontigscommand.cpp | 5 +++-- source/commands/makecontigscommand.h | 2 +- source/mothurout.cpp | 7 ++++--- 5 files changed, 10 insertions(+), 12 deletions(-) diff --git a/source/commands/chimerauchimecommand.cpp b/source/commands/chimerauchimecommand.cpp index 536b6e92..874239bf 100644 --- a/source/commands/chimerauchimecommand.cpp +++ b/source/commands/chimerauchimecommand.cpp @@ -1666,8 +1666,6 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename //divide file int count = 0; int spot = 0; - map files; - map::iterator it3; for (int i = 0; i < processors; i++) { ofstream temp; @@ -1679,9 +1677,6 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename m->openInputFile(filename, in); while(!in.eof()) { - - if (m->control_pressed) { in.close(); for (it3 = filehandles.begin(); it3 != filehandles.end(); it3++) { (*(it3->second)).close(); delete it3->second; } return 0; } - Sequence tempSeq(in); m->gobble(in); if (tempSeq.getName() != "") { @@ -1751,6 +1746,7 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename //get rid of the file pieces. for (int i = 0; i < files.size(); i++) { m->mothurRemove(files[i]); } + return num; } catch(exception& e) { diff --git a/source/commands/filterseqscommand.h b/source/commands/filterseqscommand.h index 93e7aaa8..e11ed9f6 100644 --- a/source/commands/filterseqscommand.h +++ b/source/commands/filterseqscommand.h @@ -155,7 +155,7 @@ static DWORD WINAPI MyCreateFilterThreadFunction(LPVOID lpParam){ if (current.getName() != "") { if (pDataArray->m->debug) { pDataArray->m->mothurOutJustToScreen("[DEBUG]: " + current.getName() + " length = " + toString(current.getAligned().length())); pDataArray->m->mothurOutEndLine();} - if (current.getAligned().length() != pDataArray->alignmentLength) { pDataArray->m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); pDataArray->m->mothurOutEndLine(); error = true; if (!pDataArray->m->debug) { pDataArray->m->control_pressed = true; }else{ pDataArray->m->mothurOutJustToLog("[DEBUG]: " + current.getName() + " length = " + toString(seq.getAligned().length())); pDataArray->m->mothurOutEndLine();} } + if (current.getAligned().length() != pDataArray->alignmentLength) { pDataArray->m->mothurOut("[ERROR]: Sequences are not all the same length, please correct."); pDataArray->m->mothurOutEndLine(); error = true; if (!pDataArray->m->debug) { pDataArray->m->control_pressed = true; }else{ pDataArray->m->mothurOutJustToLog("[DEBUG]: " + current.getName() + " length = " + toString(current.getAligned().length())); pDataArray->m->mothurOutEndLine();} } if(pDataArray->trump != '*') { pDataArray->F.doTrump(current); } if(pDataArray->m->isTrue(pDataArray->vertical) || pDataArray->soft != 0) { pDataArray->F.getFreqs(current); } diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 8012bbca..3de9867c 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -1170,7 +1170,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vector > MakeContigsCommand::readFileNames(string filename){ } } - + + if ((openForward != 1) && (openReverse != 1) && (openFindex != 1) && (openRindex != 1)) { //good pair file2Group[files.size()] = group; vector pair; diff --git a/source/commands/makecontigscommand.h b/source/commands/makecontigscommand.h index 1a25065d..e967eea6 100644 --- a/source/commands/makecontigscommand.h +++ b/source/commands/makecontigscommand.h @@ -1618,7 +1618,7 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ for (it = uniqueFastaNames.begin(); it != uniqueFastaNames.end(); it++) { - if (pDataArray->renameSeq) { pDataArray->theseAllFileNames[it->first] = it->second; } + if (pDataArray->renameSeqs) { pDataArray->theseAllFileNames[it->first] = it->second; } ifstream in; pDataArray->m->openInputFile(it->first, in); diff --git a/source/mothurout.cpp b/source/mothurout.cpp index c11999c4..50f8b9e4 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -520,9 +520,10 @@ unsigned long long MothurOut::getRAMUsed() { getrusage(RUSAGE_SELF, & r_usage); return r_usage.ru_maxrss * 1024; #else - PROCESS_MEMORY_COUNTERS info; - GetProcessMemoryInfo( GetCurrentProcess( ), &info, sizeof(info) ); - return (size_t)info.PeakWorkingSetSize; + MEMORYSTATUSEX status; + status.dwLength = sizeof(status); + GlobalMemoryStatusEx(&status); + return (size_t)(status.ullTotalPhys - status.ullAvailPhys); #endif } catch(exception& e) { From 24d445d05ab45fb7e3b7b6cce9cc6cbd63c37849 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 11:06:16 -0500 Subject: [PATCH 107/135] Changes minlength=10 in screen.seqs #160 --- source/commands/screenseqscommand.cpp | 17 +++++++++-------- source/commands/screenseqscommand.h | 2 +- 2 files changed, 10 insertions(+), 9 deletions(-) diff --git a/source/commands/screenseqscommand.cpp b/source/commands/screenseqscommand.cpp index cfc36493..7c7f4546 100644 --- a/source/commands/screenseqscommand.cpp +++ b/source/commands/screenseqscommand.cpp @@ -27,7 +27,7 @@ vector ScreenSeqsCommand::setParameters(){ CommandParameter pend("end", "Number", "", "-1", "", "", "","",false,false,true); parameters.push_back(pend); CommandParameter pmaxambig("maxambig", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pmaxambig); CommandParameter pmaxhomop("maxhomop", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pmaxhomop); - CommandParameter pminlength("minlength", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pminlength); + CommandParameter pminlength("minlength", "Number", "", "10", "", "", "","",false,false); parameters.push_back(pminlength); CommandParameter pmaxlength("maxlength", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pmaxlength); CommandParameter pprocessors("processors", "Number", "", "1", "", "", "","",false,false,true); parameters.push_back(pprocessors); CommandParameter pcriteria("criteria", "Number", "", "90", "", "", "","",false,false); parameters.push_back(pcriteria); @@ -72,7 +72,7 @@ string ScreenSeqsCommand::getHelpString(){ helpString += "The end parameter is used to set a position the \"good\" sequences must end after. The default is -1.\n"; helpString += "The maxambig parameter allows you to set the maximum number of ambigious bases allowed. The default is -1.\n"; helpString += "The maxhomop parameter allows you to set a maximum homopolymer length. \n"; - helpString += "The minlength parameter allows you to set and minimum sequence length. \n"; + helpString += "The minlength parameter allows you to set and minimum sequence length. Default=10.\n"; helpString += "The maxn parameter allows you to set and maximum number of N's allowed in a sequence. \n"; helpString += "The minoverlap parameter allows you to set and minimum overlap. The default is -1. \n"; helpString += "The ostart parameter is used to set an overlap position the \"good\" sequences must start by. The default is -1. \n"; @@ -335,7 +335,7 @@ ScreenSeqsCommand::ScreenSeqsCommand(string option) { temp = validParameter.validFile(parameters, "maxhomop", false); if (temp == "not found") { temp = "-1"; } m->mothurConvert(temp, maxHomoP); - temp = validParameter.validFile(parameters, "minlength", false); if (temp == "not found") { temp = "-1"; } + temp = validParameter.validFile(parameters, "minlength", false); if (temp == "not found") { temp = "10"; } m->mothurConvert(temp, minLength); temp = validParameter.validFile(parameters, "maxlength", false); if (temp == "not found") { temp = "-1"; } @@ -824,7 +824,7 @@ int ScreenSeqsCommand::screenSummary(map& badSeqNames){ if(endPos != -1 && endPos > end) { goodSeq = 0; trashCode += "end|"; } if(maxAmbig != -1 && maxAmbig < ambigs) { goodSeq = 0; trashCode += "ambig|"; } if(maxHomoP != -1 && maxHomoP < polymer) { goodSeq = 0; trashCode += "homop|"; } - if(minLength != -1 && minLength > length) { goodSeq = 0; trashCode += " length) { goodSeq = 0; trashCode += "mothurOut("Optimizing end to " + toString(endPos) + "."); m->mothurOutEndLine();} else if (optimize[i] == "maxambig") { maxAmbig = ambigBases[criteriaPercentile]; m->mothurOut("Optimizing maxambig to " + toString(maxAmbig) + "."); m->mothurOutEndLine(); } else if (optimize[i] == "maxhomop") { maxHomoP = longHomoPolymer[criteriaPercentile]; m->mothurOut("Optimizing maxhomop to " + toString(maxHomoP) + "."); m->mothurOutEndLine(); } - else if (optimize[i] == "minlength") { int mincriteriaPercentile = int(seqLength.size() * ((100 - criteria) / (float) 100)); minLength = seqLength[mincriteriaPercentile]; m->mothurOut("Optimizing minlength to " + toString(minLength) + "."); m->mothurOutEndLine(); } + else if (optimize[i] == "minlength") { int mincriteriaPercentile = int(seqLength.size() * ((100 - criteria) / (float) 100)); minLength = seqLength[mincriteriaPercentile]; m->mothurOut("Optimizing minlength to " + toString(minLength) + "."); m->mothurOutEndLine(); if (minLength < 0) { m->control_pressed = true; } } else if (optimize[i] == "maxlength") { maxLength = seqLength[criteriaPercentile]; m->mothurOut("Optimizing maxlength to " + toString(maxLength) + "."); m->mothurOutEndLine(); } } @@ -1779,11 +1779,12 @@ int ScreenSeqsCommand::getSummary(vector& positions){ else if (optimize[i] == "end") { int endcriteriaPercentile = int(endPosition.size() * ((100 - criteria) / (float) 100)); endPos = endPosition[endcriteriaPercentile]; m->mothurOut("Optimizing end to " + toString(endPos) + "."); m->mothurOutEndLine();} else if (optimize[i] == "maxambig") { maxAmbig = ambigBases[criteriaPercentile]; m->mothurOut("Optimizing maxambig to " + toString(maxAmbig) + "."); m->mothurOutEndLine(); } else if (optimize[i] == "maxhomop") { maxHomoP = longHomoPolymer[criteriaPercentile]; m->mothurOut("Optimizing maxhomop to " + toString(maxHomoP) + "."); m->mothurOutEndLine(); } - else if (optimize[i] == "minlength") { int mincriteriaPercentile = int(seqLength.size() * ((100 - criteria) / (float) 100)); minLength = seqLength[mincriteriaPercentile]; m->mothurOut("Optimizing minlength to " + toString(minLength) + "."); m->mothurOutEndLine(); } + else if (optimize[i] == "minlength") { int mincriteriaPercentile = int(seqLength.size() * ((100 - criteria) / (float) 100)); minLength = seqLength[mincriteriaPercentile]; m->mothurOut("Optimizing minlength to " + toString(minLength) + "."); m->mothurOutEndLine(); if (minLength < 0) { m->control_pressed = true; } } else if (optimize[i] == "maxlength") { maxLength = seqLength[criteriaPercentile]; m->mothurOut("Optimizing maxlength to " + toString(maxLength) + "."); m->mothurOutEndLine(); } else if (optimize[i] == "maxn") { maxN = numNs[criteriaPercentile]; m->mothurOut("Optimizing maxn to " + toString(maxN) + "."); m->mothurOutEndLine(); } } - + + return 0; } catch(exception& e) { @@ -2332,7 +2333,7 @@ int ScreenSeqsCommand::driver(linePair filePos, string goodFName, string badAccn if(endPos != -1 && endPos > currSeq.getEndPos()) { goodSeq = 0; trashCode += "end|";} if(maxAmbig != -1 && maxAmbig < currSeq.getAmbigBases()) { goodSeq = 0; trashCode += "ambig|";} if(maxHomoP != -1 && maxHomoP < currSeq.getLongHomoPolymer()) { goodSeq = 0; trashCode += "homop|";} - if(minLength != -1 && minLength > currSeq.getNumBases()) { goodSeq = 0; trashCode += " currSeq.getNumBases()) { goodSeq = 0; trashCode += "endPos != -1 && pDataArray->endPos > currSeq.getEndPos()) { goodSeq = 0; trashCode += "end|"; } if(pDataArray->maxAmbig != -1 && pDataArray->maxAmbig < currSeq.getAmbigBases()) { goodSeq = 0; trashCode += "ambig|"; } if(pDataArray->maxHomoP != -1 && pDataArray->maxHomoP < currSeq.getLongHomoPolymer()) { goodSeq = 0; trashCode += "homop|"; } - if(pDataArray->minLength != -1 && pDataArray->minLength > currSeq.getNumBases()) { goodSeq = 0; trashCode += "minLength > currSeq.getNumBases()) { goodSeq = 0; trashCode += "maxLength != -1 && pDataArray->maxLength < currSeq.getNumBases()) { goodSeq = 0; trashCode += ">length|"; } } if (pDataArray->contigsreport == "") { //contigs report includes this so no need to check again From 52c123f1468697835bfb7441b33f10fe4cc414ac Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 11:06:46 -0500 Subject: [PATCH 108/135] Fixes summary.seqs output to remove -1's --- source/commands/seqsummarycommand.cpp | 26 +++++++++++++++++--------- 1 file changed, 17 insertions(+), 9 deletions(-) diff --git a/source/commands/seqsummarycommand.cpp b/source/commands/seqsummarycommand.cpp index c182db7d..6e1e07a5 100644 --- a/source/commands/seqsummarycommand.cpp +++ b/source/commands/seqsummarycommand.cpp @@ -262,7 +262,8 @@ int SeqSummaryCommand::execute(){ if ((startPosition.begin())->first == -1) { starts[0] = 0; } else {starts[0] = (startPosition.begin())->first; } long long totalSoFar = 0; - starts[0] = (startPosition.begin())->first; + //set all values to min + starts[1] = starts[0]; starts[2] = starts[0]; starts[3] = starts[0]; starts[4] = starts[0]; starts[5] = starts[0]; int lastValue = 0; for (map::iterator it = startPosition.begin(); it != startPosition.end(); it++) { int value = it->first; if (value == -1) { value = 0; } @@ -281,7 +282,8 @@ int SeqSummaryCommand::execute(){ if ((endPosition.begin())->first == -1) { ends[0] = 0; } else {ends[0] = (endPosition.begin())->first; } totalSoFar = 0; - ends[0] = (endPosition.begin())->first; + //set all values to min + ends[1] = ends[0]; ends[2] = ends[0]; ends[3] = ends[0]; ends[4] = ends[0]; ends[5] = ends[0]; lastValue = 0; for (map::iterator it = endPosition.begin(); it != endPosition.end(); it++) { int value = it->first; if (value == -1) { value = 0; } @@ -298,7 +300,10 @@ int SeqSummaryCommand::execute(){ } ends[6] = (endPosition.rbegin())->first; - lengths[0] = (seqLength.begin())->first; + if ((seqLength.begin())->first == -1) { lengths[0] = 0; } + else {lengths[0] = (seqLength.begin())->first; } + //set all values to min + lengths[1] = lengths[0]; lengths[2] = lengths[0]; lengths[3] = lengths[0]; lengths[4] = lengths[0]; lengths[5] = lengths[0]; totalSoFar = 0; lastValue = 0; for (map::iterator it = seqLength.begin(); it != seqLength.end(); it++) { @@ -316,7 +321,10 @@ int SeqSummaryCommand::execute(){ } lengths[6] = (seqLength.rbegin())->first; - ambigs[0] = (ambigBases.begin())->first; + if ((ambigBases.begin())->first == -1) { ambigs[0] = 0; } + else {ambigs[0] = (ambigBases.begin())->first; } + //set all values to min + ambigs[1] = ambigs[0]; ambigs[2] = ambigs[0]; ambigs[3] = ambigs[0]; ambigs[4] = ambigs[0]; ambigs[5] = ambigs[0]; totalSoFar = 0; lastValue = 0; for (map::iterator it = ambigBases.begin(); it != ambigBases.end(); it++) { @@ -334,7 +342,11 @@ int SeqSummaryCommand::execute(){ } ambigs[6] = (ambigBases.rbegin())->first; - homops[0] = (longHomoPolymer.begin())->first; + + if ((longHomoPolymer.begin())->first == -1) { homops[0] = 0; } + else {homops[0] = (longHomoPolymer.begin())->first; } + //set all values to min + homops[1] = homops[0]; homops[2] = homops[0]; homops[3] = homops[0]; homops[4] = homops[0]; homops[5] = homops[0]; totalSoFar = 0; lastValue = 0; for (map::iterator it = longHomoPolymer.begin(); it != longHomoPolymer.end(); it++) { @@ -356,10 +368,6 @@ int SeqSummaryCommand::execute(){ meanstartPosition = meanStartPosition / (double) size; meanendPosition = meanEndPosition /(double) size; meanlongHomoPolymer = meanLongHomoPolymer / (double) size; meanseqLength = meanSeqLength / (double) size; meanambigBases = meanAmbigBases /(double) size; - //to compensate for blank sequences that would result in startPosition and endPostion equalling -1 - if (startPosition[0] == -1) { startPosition[0] = 0; } - if (endPosition[0] == -1) { endPosition[0] = 0; } - if (m->control_pressed) { m->mothurRemove(summaryFile); return 0; } m->mothurOutEndLine(); From 38a959d6495060c47885346fe7c4f2042952cde9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 11:28:07 -0500 Subject: [PATCH 109/135] Fixes windows bug where processors adjust was set+1 If number of processors was greater than number of sequences than we meant to adjust processors to number of sequences, but instead were adjusting to the number of file positions. The number of file positions is the number of sequences + 1. Rare bug caused empty file error. #195 --- source/commands/aligncommand.cpp | 2 +- source/commands/chimeraslayercommand.cpp | 2 +- source/commands/chopseqscommand.cpp | 2 +- source/commands/classifyseqscommand.cpp | 2 +- source/commands/degapseqscommand.cpp | 2 +- source/commands/filterseqscommand.cpp | 4 ++-- source/commands/makecontigscommand.cpp | 2 +- source/commands/pcrseqscommand.cpp | 2 +- source/commands/screenseqscommand.cpp | 6 +++--- source/commands/seqsummarycommand.cpp | 2 +- source/commands/summaryqualcommand.cpp | 2 +- source/commands/trimseqscommand.cpp | 2 +- 12 files changed, 15 insertions(+), 15 deletions(-) diff --git a/source/commands/aligncommand.cpp b/source/commands/aligncommand.cpp index f7911b8b..e7fb7eb7 100644 --- a/source/commands/aligncommand.cpp +++ b/source/commands/aligncommand.cpp @@ -344,7 +344,7 @@ int AlignCommand::execute(){ lines.push_back(new linePair(0, 1000)); }else { positions = m->setFilePosFasta(candidateFileNames[s], numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; diff --git a/source/commands/chimeraslayercommand.cpp b/source/commands/chimeraslayercommand.cpp index f532fde1..f36670f5 100644 --- a/source/commands/chimeraslayercommand.cpp +++ b/source/commands/chimeraslayercommand.cpp @@ -725,7 +725,7 @@ int ChimeraSlayerCommand::execute(){ if (processors == 1) { lines.push_back(linePair(0, 1000)); } else { positions = m->setFilePosFasta(thisFastaName, numSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numSeqs < processors) { processors = numSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numSeqs / processors; diff --git a/source/commands/chopseqscommand.cpp b/source/commands/chopseqscommand.cpp index be047819..a560d4a6 100644 --- a/source/commands/chopseqscommand.cpp +++ b/source/commands/chopseqscommand.cpp @@ -274,7 +274,7 @@ int ChopSeqsCommand::execute(){ #else int numSeqs = 0; positions = m->setFilePosFasta(fastafile, numSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numSeqs < processors) { processors = numSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numSeqs / processors; diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 1f80d3c8..0596d3df 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -676,7 +676,7 @@ int ClassifySeqsCommand::execute(){ lines.push_back(new linePair(0, 1000)); }else { positions = m->setFilePosFasta(fastaFileNames[s], numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; diff --git a/source/commands/degapseqscommand.cpp b/source/commands/degapseqscommand.cpp index 6352d7ca..9f10d980 100644 --- a/source/commands/degapseqscommand.cpp +++ b/source/commands/degapseqscommand.cpp @@ -357,7 +357,7 @@ int DegapSeqsCommand::createProcesses(string filename, string outputFileName){ lines.push_back(linePair(0, 1000)); }else { positions = m->setFilePosFasta(filename, numSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numSeqs < processors) { processors = numSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numSeqs / processors; diff --git a/source/commands/filterseqscommand.cpp b/source/commands/filterseqscommand.cpp index 8dd2afcb..c7ae5c90 100644 --- a/source/commands/filterseqscommand.cpp +++ b/source/commands/filterseqscommand.cpp @@ -362,7 +362,7 @@ int FilterSeqsCommand::filterSequences() { if(processors != 1){ int numFastaSeqs = 0; positions = m->setFilePosFasta(fastafileNames[s], numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } } #endif } @@ -687,7 +687,7 @@ string FilterSeqsCommand::createFilter() { }else { int numFastaSeqs = 0; positions = m->setFilePosFasta(fastafileNames[s], numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 3de9867c..1b468787 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -2768,7 +2768,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect }else{ long long numFastaSeqs = 0; fastaFilePos = m->setFilePosFasta(fasta[0], numFastaSeqs, delim); //forward - if (fastaFilePos.size() < processors) { processors = fastaFilePos.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } long long numRFastaSeqs = 0; qfileFilePos = m->setFilePosFasta(fasta[1], numRFastaSeqs, delim); //reverse diff --git a/source/commands/pcrseqscommand.cpp b/source/commands/pcrseqscommand.cpp index 96ecf925..83bf2b0a 100644 --- a/source/commands/pcrseqscommand.cpp +++ b/source/commands/pcrseqscommand.cpp @@ -340,7 +340,7 @@ int PcrSeqsCommand::execute(){ lines.push_back(linePair(0, 1000)); }else { positions = m->setFilePosFasta(fastafile, numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; diff --git a/source/commands/screenseqscommand.cpp b/source/commands/screenseqscommand.cpp index 7c7f4546..832b21e5 100644 --- a/source/commands/screenseqscommand.cpp +++ b/source/commands/screenseqscommand.cpp @@ -568,7 +568,7 @@ int ScreenSeqsCommand::screenReports(map& badSeqNames){ else { int numFastaSeqs = 0; positions = m->setFilePosFasta(fastafile, numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; @@ -903,7 +903,7 @@ int ScreenSeqsCommand::screenFasta(map& badSeqNames){ else { int numFastaSeqs = 0; positions = m->setFilePosFasta(fastafile, numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; @@ -1741,7 +1741,7 @@ int ScreenSeqsCommand::getSummary(vector& positions){ else { int numFastaSeqs = 0; positions = m->setFilePosFasta(fastafile, numFastaSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numFastaSeqs / processors; diff --git a/source/commands/seqsummarycommand.cpp b/source/commands/seqsummarycommand.cpp index 6e1e07a5..669d7644 100644 --- a/source/commands/seqsummarycommand.cpp +++ b/source/commands/seqsummarycommand.cpp @@ -220,7 +220,7 @@ int SeqSummaryCommand::execute(){ for (int i = 0; i < (positions.size()-1); i++) { lines.push_back(new linePair(positions[i], positions[(i+1)])); } #else positions = m->setFilePosFasta(fastafile, numSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numSeqs < processors) { processors = numSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numSeqs / processors; diff --git a/source/commands/summaryqualcommand.cpp b/source/commands/summaryqualcommand.cpp index d4970bff..05cdf497 100644 --- a/source/commands/summaryqualcommand.cpp +++ b/source/commands/summaryqualcommand.cpp @@ -210,7 +210,7 @@ int SummaryQualCommand::execute(){ lines.push_back(linePair(0, 1000)); }else { positions = m->setFilePosFasta(qualfile, numSeqs); - if (positions.size() < processors) { processors = positions.size(); } + if (numSeqs < processors) { processors = numSeqs; } //figure out how many sequences you have to process int numSeqsPerProcessor = numSeqs / processors; diff --git a/source/commands/trimseqscommand.cpp b/source/commands/trimseqscommand.cpp index 28e01e8d..159ac05d 100644 --- a/source/commands/trimseqscommand.cpp +++ b/source/commands/trimseqscommand.cpp @@ -1676,7 +1676,7 @@ int TrimSeqsCommand::setLines(string filename, string qfilename) { }else{ int numFastaSeqs = 0; fastaFilePos = m->setFilePosFasta(filename, numFastaSeqs); - if (fastaFilePos.size() < processors) { processors = fastaFilePos.size(); } + if (numFastaSeqs < processors) { processors = numFastaSeqs; } if (qfilename != "") { int numQualSeqs = 0; From a673e24d6cfee36afd0141bf3212f464d5134b41 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 12:53:43 -0500 Subject: [PATCH 110/135] Replaces load.logfile with updates to set and get.current #110 --- Mothur.xcodeproj/project.pbxproj | 8 - source/commandfactory.cpp | 5 - source/commands/getcurrentcommand.cpp | 42 ++++- source/commands/getcurrentcommand.h | 4 +- source/commands/loadlogfilecommand.cpp | 289 --------------------------------- source/commands/loadlogfilecommand.h | 47 ------ source/commands/setcurrentcommand.cpp | 143 +++++++++++++++- source/commands/setcurrentcommand.h | 5 +- source/mothurout.cpp | 87 +++++++--- source/mothurout.h | 2 +- 10 files changed, 244 insertions(+), 388 deletions(-) delete mode 100644 source/commands/loadlogfilecommand.cpp delete mode 100644 source/commands/loadlogfilecommand.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 2bb38aa0..04575b1a 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -182,7 +182,6 @@ 481FB5D21AC1B75C0076CFF3 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */; }; 481FB5D31AC1B75C0076CFF3 /* listotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */; }; 481FB5D41AC1B75C0076CFF3 /* listseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */; }; - 481FB5D51AC1B75C0076CFF3 /* loadlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */; }; 481FB5D61AC1B75C0076CFF3 /* mantelcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7FA10011302E096003860FE /* mantelcommand.cpp */; }; 481FB5D71AC1B75C0076CFF3 /* makebiomcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A724D2B6153C8628000A826F /* makebiomcommand.cpp */; }; 481FB5D81AC1B75C0076CFF3 /* makecontigscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */; }; @@ -420,7 +419,6 @@ A727864412E9E28C00F86ABA /* removerarecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A727864312E9E28C00F86ABA /* removerarecommand.cpp */; }; A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C241619E52200651424 /* abstractdecisiontree.cpp */; }; A7386C29161A110800651424 /* decisiontree.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7386C28161A110700651424 /* decisiontree.cpp */; }; - A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */; }; A73DDBBA13C4A0D1006AAE38 /* clearmemorycommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */; }; A73DDC3813C4BF64006AAE38 /* mothurmetastats.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; }; A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; }; @@ -893,8 +891,6 @@ A7386C201619CACB00651424 /* rftreenode.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; name = rftreenode.hpp; path = source/randomforest/rftreenode.hpp; sourceTree = ""; }; A7386C241619E52200651424 /* abstractdecisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = abstractdecisiontree.cpp; path = source/randomforest/abstractdecisiontree.cpp; sourceTree = ""; }; A7386C28161A110700651424 /* decisiontree.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = decisiontree.cpp; path = source/randomforest/decisiontree.cpp; sourceTree = ""; }; - A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = loadlogfilecommand.h; path = source/commands/loadlogfilecommand.h; sourceTree = ""; }; - A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = loadlogfilecommand.cpp; path = source/commands/loadlogfilecommand.cpp; sourceTree = ""; }; A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = clearmemorycommand.h; path = source/commands/clearmemorycommand.h; sourceTree = ""; }; A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = clearmemorycommand.cpp; path = source/commands/clearmemorycommand.cpp; sourceTree = ""; }; A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = mothurmetastats.h; path = source/metastats/mothurmetastats.h; sourceTree = ""; }; @@ -1943,8 +1939,6 @@ A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */, A7E9B73E12D37EC400DA6239 /* listseqscommand.h */, A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */, - A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */, - A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */, A7FA10001302E096003860FE /* mantelcommand.h */, A7FA10011302E096003860FE /* mantelcommand.cpp */, A724D2B4153C8600000A826F /* makebiomcommand.h */, @@ -2692,7 +2686,6 @@ 481FB5C81AC1B74F0076CFF3 /* getseqscommand.cpp in Sources */, 481FB6011AC1B7970076CFF3 /* reversecommand.cpp in Sources */, 481FB55E1AC1B66D0076CFF3 /* sharedjackknife.cpp in Sources */, - 481FB5D51AC1B75C0076CFF3 /* loadlogfilecommand.cpp in Sources */, 481FB64B1AC1B7F40076CFF3 /* suffixtree.cpp in Sources */, 481FB5F21AC1B77E0076CFF3 /* phylotypecommand.cpp in Sources */, 481FB6281AC1B7EA0076CFF3 /* blastalign.cpp in Sources */, @@ -3263,7 +3256,6 @@ A7A0671F1562AC3E0095C8C5 /* makecontigscommand.cpp in Sources */, A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */, A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */, - A73901081588C40900ED2ED6 /* loadlogfilecommand.cpp in Sources */, A74D59A4159A1E2000043046 /* counttable.cpp in Sources */, A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */, A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */, diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index 76874a4f..eab30c4a 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -131,7 +131,6 @@ #include "getotulabelscommand.h" #include "removeotulabelscommand.h" #include "makecontigscommand.h" -#include "loadlogfilecommand.h" #include "sffmultiplecommand.h" #include "classifysvmsharedcommand.h" #include "classifyrfsharedcommand.h" @@ -306,7 +305,6 @@ CommandFactory::CommandFactory(){ commands["get.otulabels"] = "get.otulabels"; commands["remove.otulabels"] = "remove.otulabels"; commands["make.contigs"] = "make.contigs"; - commands["load.logfile"] = "load.logfile"; commands["make.table"] = "make.table"; commands["sff.multiple"] = "sff.multiple"; commands["quit"] = "quit"; @@ -557,7 +555,6 @@ Command* CommandFactory::getCommand(string commandName, string optionString){ else if(commandName == "make.biom") { command = new MakeBiomCommand(optionString); } else if(commandName == "get.coremicrobiome") { command = new GetCoreMicroBiomeCommand(optionString); } else if(commandName == "make.contigs") { command = new MakeContigsCommand(optionString); } - else if(commandName == "load.logfile") { command = new LoadLogfileCommand(optionString); } else if(commandName == "sff.multiple") { command = new SffMultipleCommand(optionString); } else if(commandName == "classify.svm") { command = new ClassifySvmSharedCommand(optionString); } else if(commandName == "classify.rf") { command = new ClassifyRFSharedCommand(optionString); } @@ -731,7 +728,6 @@ Command* CommandFactory::getCommand(string commandName, string optionString, str else if(commandName == "make.biom") { pipecommand = new MakeBiomCommand(optionString); } else if(commandName == "get.coremicrobiome") { pipecommand = new GetCoreMicroBiomeCommand(optionString); } else if(commandName == "make.contigs") { pipecommand = new MakeContigsCommand(optionString); } - else if(commandName == "load.logfile") { pipecommand = new LoadLogfileCommand(optionString); } else if(commandName == "sff.multiple") { pipecommand = new SffMultipleCommand(optionString); } else if(commandName == "classify.rf") { pipecommand = new ClassifyRFSharedCommand(optionString); } else if(commandName == "filter.shared") { pipecommand = new FilterSharedCommand(optionString); } @@ -891,7 +887,6 @@ Command* CommandFactory::getCommand(string commandName){ else if(commandName == "make.biom") { shellcommand = new MakeBiomCommand(); } else if(commandName == "get.coremicrobiome") { shellcommand = new GetCoreMicroBiomeCommand(); } else if(commandName == "make.contigs") { shellcommand = new MakeContigsCommand(); } - else if(commandName == "load.logfile") { shellcommand = new LoadLogfileCommand(); } else if(commandName == "sff.multiple") { shellcommand = new SffMultipleCommand(); } else if(commandName == "classify.rf") { shellcommand = new ClassifyRFSharedCommand(); } else if(commandName == "filter.shared") { shellcommand = new FilterSharedCommand(); } diff --git a/source/commands/getcurrentcommand.cpp b/source/commands/getcurrentcommand.cpp index f9f33904..d06c74e5 100644 --- a/source/commands/getcurrentcommand.cpp +++ b/source/commands/getcurrentcommand.cpp @@ -47,6 +47,8 @@ GetCurrentCommand::GetCurrentCommand(){ try { abort = true; calledHelp = true; setParameters(); + vector tempOutNames; + outputTypes["summary"] = tempOutNames; } catch(exception& e) { m->errorOut(e, "GetCurrentCommand", "GetCurrentCommand"); @@ -54,6 +56,21 @@ GetCurrentCommand::GetCurrentCommand(){ } } //********************************************************************************************************************** +string GetCurrentCommand::getOutputPattern(string type) { + try { + string pattern = ""; + + if (type == "summary") { pattern = "[filename],current_files.summary"; } + else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } + + return pattern; + } + catch(exception& e) { + m->errorOut(e, "GetCurrentCommand", "getOutputPattern"); + exit(1); + } +} +//********************************************************************************************************************** GetCurrentCommand::GetCurrentCommand(string option) { try { abort = false; calledHelp = false; @@ -74,9 +91,15 @@ GetCurrentCommand::GetCurrentCommand(string option) { if (validParameter.isValidParameter(it->first, myArray, it->second) != true) { abort = true; } } + vector tempOutNames; + outputTypes["summary"] = tempOutNames; + clearTypes = validParameter.validFile(parameters, "clear", false); if (clearTypes == "not found") { clearTypes = ""; } else { m->splitAtDash(clearTypes, types); } + + //if the user changes the output directory command factory will send this info to us in the output parameter + outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; } } } @@ -164,8 +187,13 @@ int GetCurrentCommand::execute(){ m->mothurOut("\nCurrent RAM usage: " + toString(ramUsed/(double)GIG) + " Gigabytes. Total Ram: " + toString(total/(double)GIG) + " Gigabytes.\n"); if (m->hasCurrentFiles()) { + map variables; + variables["[filename]"] = m->getFullPathName(outputDir); + string filename = getOutputFileName("summary", variables); + m->mothurOutEndLine(); m->mothurOut("Current files saved by mothur:"); m->mothurOutEndLine(); - m->printCurrentFiles(); + m->printCurrentFiles(filename); + outputNames.push_back(filename); outputTypes["summary"].push_back(filename); } string inputDir = cFactory->getInputDir(); @@ -190,8 +218,16 @@ int GetCurrentCommand::execute(){ #endif temp = m->getFullPathName(temp); m->mothurOutEndLine(); m->mothurOut("Current working directory: " + temp); m->mothurOutEndLine(); - - return 0; + + if (m->hasCurrentFiles()) { + m->mothurOutEndLine(); + m->mothurOut("Output File Names: "); m->mothurOutEndLine(); + for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } + m->mothurOutEndLine(); + } + + return 0; + } catch(exception& e) { diff --git a/source/commands/getcurrentcommand.h b/source/commands/getcurrentcommand.h index e426fe95..cd93f5c4 100644 --- a/source/commands/getcurrentcommand.h +++ b/source/commands/getcurrentcommand.h @@ -24,7 +24,7 @@ class GetCurrentCommand : public Command { string getCommandName() { return "get.current"; } string getCommandCategory() { return "General"; } string getHelpString(); - string getOutputPattern(string) { return ""; } + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Get.current"; } string getDescription() { return "get current files saved by mothur"; } @@ -39,7 +39,7 @@ class GetCurrentCommand : public Command { vector outputNames; bool abort; - string clearTypes; + string clearTypes, outputDir; vector types; }; diff --git a/source/commands/loadlogfilecommand.cpp b/source/commands/loadlogfilecommand.cpp deleted file mode 100644 index a0837b6f..00000000 --- a/source/commands/loadlogfilecommand.cpp +++ /dev/null @@ -1,289 +0,0 @@ -// -// loadlogfilecommand.cpp -// Mothur -// -// Created by Sarah Westcott on 6/13/12. -// Copyright (c) 2012 Schloss Lab. All rights reserved. -// - -#include "loadlogfilecommand.h" -#include "commandoptionparser.hpp" -#include "commandfactory.hpp" -#include "setcurrentcommand.h" - -//********************************************************************************************************************** -vector LoadLogfileCommand::setParameters(){ - try { - CommandParameter plogfile("logfile", "InputTypes", "", "", "none", "none", "none","",false,true,true); parameters.push_back(plogfile); - CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); - CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); - CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); - - vector myArray; - for (int i = 0; i < parameters.size(); i++) { myArray.push_back(parameters[i].name); } - return myArray; - } - catch(exception& e) { - m->errorOut(e, "LoadLogfileCommand", "setParameters"); - exit(1); - } -} -//********************************************************************************************************************** -string LoadLogfileCommand::getHelpString(){ - try { - string helpString = ""; - helpString += "The load.logfile command extracts the current file names from a logfile.\n"; - helpString += "The load.logfile parameter is logfile, and it is required.\n"; - helpString += "The load.logfile command should be in the following format: \n"; - helpString += "load.logfile(logfile=yourLogFile)\n"; - return helpString; - } - catch(exception& e) { - m->errorOut(e, "LoadLogfileCommand", "getHelpString"); - exit(1); - } -} -//********************************************************************************************************************** -LoadLogfileCommand::LoadLogfileCommand(){ - try { - abort = true; calledHelp = true; - setParameters(); - } - catch(exception& e) { - m->errorOut(e, "LoadLogfileCommand", "LoadLogfileCommand"); - exit(1); - } -} -//********************************************************************************************************************** -LoadLogfileCommand::LoadLogfileCommand(string option) { - try { - abort = false; calledHelp = false; - - //allow user to run help - if(option == "help") { help(); abort = true; calledHelp = true; } - else if(option == "citation") { citation(); abort = true; calledHelp = true;} - - else { - //valid paramters for this command - vector myArray = setParameters(); - - OptionParser parser(option); - map parameters = parser.getParameters(); - - ValidParameters validParameter; - map::iterator it; - //check to make sure all parameters are valid for command - for (it = parameters.begin(); it != parameters.end(); it++) { - if (validParameter.isValidParameter(it->first, myArray, it->second) != true) { abort = true; } - } - - //if the user changes the input directory command factory will send this info to us in the output parameter - string inputDir = validParameter.validFile(parameters, "inputdir", false); - if (inputDir == "not found"){ inputDir = ""; } - else { - - string path; - it = parameters.find("logfile"); - //user has given a template file - if(it != parameters.end()){ - path = m->hasPath(it->second); - //if the user has not given a path then, add inputdir. else leave path alone. - if (path == "") { parameters["logfile"] = inputDir + it->second; } - } - - } - - //get shared file, it is required - logfile = validParameter.validFile(parameters, "logfile", true); - if (logfile == "not open") { logfile = ""; abort = true; } - else if (logfile == "not found") { m->mothurOut("The logfile parameter is required."); m->mothurOutEndLine();abort = true; } - - //if the user changes the output directory command factory will send this info to us in the output parameter - outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ - outputDir = m->hasPath(logfile); //if user entered a file with a path then preserve it - } - } - - } - catch(exception& e) { - m->errorOut(e, "NewCommand", "NewCommand"); - exit(1); - } -} -//********************************************************************************************************************** - -int LoadLogfileCommand::execute(){ - try { - - if (abort == true) { if (calledHelp) { return 0; } return 2; } - - m->mothurOutEndLine(); - m->mothurOut("Extracting current files names..."); m->mothurOutEndLine(); - m->mothurOutEndLine(); - - CommandFactory* cFactory; - cFactory = CommandFactory::getInstance(); - - ifstream in; - m->openInputFile(logfile, in); - - set currentTypes = m->getCurrentTypes(); - map currentFiles; - string commandName = ""; - bool skip = false; - string line = ""; - - while (!in.eof()) { - if (m->control_pressed) { break; } - - if (!skip) { line = m->getline(in); m->gobble(in); } - m->gobble(in); - - //look for "mothur >" - int pos = line.find("mothur > "); //command line - int pos2 = line.find("Output File "); //indicates command completed and we can update the current file - int pos3 = line.find("/*****************"); - - //skipping over parts where a command runs another command - if (pos3 != string::npos) { - while (!in.eof()) { - if (m->control_pressed) { break; } - line = m->getline(in); m->gobble(in); - int posTemp = line.find("/*****************"); - if (posTemp != string::npos) { break; } - } - } - - if (pos != string::npos) { - skip=false; - //extract command name and option string - string input = line.substr(pos+9); - CommandOptionParser parser(input); - commandName = parser.getCommandString(); - string options = parser.getOptionString(); - - //parse out parameters in option string - map parameters; - OptionParser optionParser(options, parameters); - - for (map::iterator it = parameters.begin(); it != parameters.end(); it++) { - if (currentTypes.count((it->first)) != 0) { //if this is a type we save - if (it->second != "current") { currentFiles[it->first] = it->second; }//save the input file name as current - } - } - }else if (pos2 != string::npos) { - //read file output file names - vector theseOutputNames; - while (!in.eof()) { - if (m->control_pressed) { break; } - line = m->getline(in); m->gobble(in); - int pos = line.find("mothur > "); - if (pos != string::npos) { skip = true; break; } - else { theseOutputNames.push_back(line); } - } - //ask command for the output names for each type based on inputs - Command* command = cFactory->getCommand(commandName); - map > thisOutputTypes = command->getOutputFiles(); - - - for (map >::iterator it = thisOutputTypes.begin(); it != thisOutputTypes.end(); it++) { - if (currentTypes.count((it->first)) != 0) { //do we save this type - //if yes whats its tag - map::iterator itCurrentFiles = currentFiles.find(it->first); - string thisTypesCurrentFile = ""; - if (itCurrentFiles != currentFiles.end()) { thisTypesCurrentFile = itCurrentFiles->second; } - - //outputfilename pattern for this input type - string pattern = command->getOutputPattern(it->first); - updateCurrent(pattern, it->first, thisTypesCurrentFile, theseOutputNames, currentFiles); - - //cout << "current=\n\n"; - //for (map::iterator itcc = currentFiles.begin(); itcc != currentFiles.end(); itcc++) { - // cout << itcc->first << '\t' << itcc->second << endl; - // } - } - } - } - } - in.close(); - - if (m->control_pressed) { return 0; } - - //output results - string inputString = ""; - for (map::iterator it = currentFiles.begin(); it != currentFiles.end(); it++) { inputString += it->first + "=" + it->second + ","; } - - if (inputString != "") { - inputString = inputString.substr(0, inputString.length()-1); - m->mothurOutEndLine(); - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - m->mothurOut("Running command: set.current(" + inputString + ")"); m->mothurOutEndLine(); - m->mothurCalling = true; - - Command* currentCommand = new SetCurrentCommand(inputString); - currentCommand->execute(); - - delete currentCommand; - m->mothurCalling = false; - m->mothurOut("/******************************************/"); m->mothurOutEndLine(); - - - } - - return 0; - } - catch(exception& e) { - m->errorOut(e, "LoadLogfileCommand", "execute"); - exit(1); - } -} -//********************************************************************************************************************** - -int LoadLogfileCommand::updateCurrent(string pattern, string type, string thisTypesCurrentFile, vector filenames, map& currentFiles){ - try { - - vector patterns; m->splitAtChar(pattern, patterns, '-'); - - for (int i = 0; i < patterns.size(); i++) { - - vector peices; m->splitAtChar(patterns[i], peices, ','); - //cout << "patterns i = " << patterns[i] << endl; - if (peices.size() != 0) { - string tag = peices[peices.size()-1]; - //cout << "tag = " << tag << endl; - if (peices[peices.size()-1] == "[extension]") { tag = m->getExtension(thisTypesCurrentFile); } - - //search for the tag in the list of output files - for (int h = 0; h < filenames.size(); h++) { - - if (m->control_pressed) { return 0; } - //cout << "filename h = " << filenames[h]<< endl; - string ending = filenames[h].substr(filenames[h].length()-tag.length(), tag.length()); - if (ending == tag) { //if it's there and this is a type we save a current version of, save it - if ((type == "column") || (type == "phylip")) { //check for format - string RippedName = ""; - bool foundDot = false; - for (int i = filenames[h].length()-1; i >= 0; i--) { - if (foundDot && (filenames[h][i] != '.')) { RippedName = filenames[h][i] + RippedName; } - else if (foundDot && (filenames[h][i] == '.')) { break; } - else if (!foundDot && (filenames[h][i] == '.')) { foundDot = true; } - } - if ((RippedName == "phylip") || (RippedName == "lt") || (RippedName == "square")) { currentFiles["phylip"] = filenames[h]; } - else { currentFiles["column"] = filenames[h]; } - }else { currentFiles[type] = filenames[h]; } - break; - } - } - } - } - - return 0; - } - catch(exception& e) { - m->errorOut(e, "LoadLogfileCommand", "updateCurrent"); - exit(1); - } -} -//********************************************************************************************************************** - - diff --git a/source/commands/loadlogfilecommand.h b/source/commands/loadlogfilecommand.h deleted file mode 100644 index ab8cacdc..00000000 --- a/source/commands/loadlogfilecommand.h +++ /dev/null @@ -1,47 +0,0 @@ -#ifndef Mothur_loadlogfilecommand_h -#define Mothur_loadlogfilecommand_h - -// -// loadlogfilecommand.h -// Mothur -// -// Created by Sarah Westcott on 6/13/12. -// Copyright (c) 2012 Schloss Lab. All rights reserved. -// - - -#include "command.hpp" - -/**************************************************************************************************/ - -class LoadLogfileCommand : public Command { -public: - LoadLogfileCommand(string); - LoadLogfileCommand(); - ~LoadLogfileCommand(){} - - vector setParameters(); - string getCommandName() { return "load.logfile"; } - string getCommandCategory() { return "General"; } - string getHelpString(); - string getOutputPattern(string) { return ""; } - string getCitation() { return "http://www.mothur.org/wiki/Load.logfile"; } - string getDescription() { return "extracts current files from a logfile"; } - - int execute(); - void help() { m->mothurOut(getHelpString()); } - -private: - bool abort; - string outputDir, logfile; - vector outputNames; - - int updateCurrent(string pattern, string type, string, vector outputNames, map& currentFiles); -}; - -/**************************************************************************************************/ - - - - -#endif diff --git a/source/commands/setcurrentcommand.cpp b/source/commands/setcurrentcommand.cpp index 32d2a255..115f7c19 100644 --- a/source/commands/setcurrentcommand.cpp +++ b/source/commands/setcurrentcommand.cpp @@ -35,6 +35,7 @@ vector SetCurrentCommand::setParameters(){ CommandParameter pshared("shared", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(pshared); CommandParameter pordergroup("ordergroup", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(pordergroup); CommandParameter pcount("count", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(pcount); + CommandParameter pcurrent("current", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(pcurrent); CommandParameter prelabund("relabund", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(prelabund); CommandParameter psff("sff", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(psff); CommandParameter poligos("oligos", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(poligos); @@ -57,7 +58,8 @@ string SetCurrentCommand::getHelpString(){ try { string helpString = ""; helpString += "The set.current command allows you to set the current files saved by mothur.\n"; - helpString += "The set.current command parameters are: clear, phylip, column, list, rabund, sabund, name, group, design, order, tree, shared, ordergroup, relabund, fasta, qfile, sff, oligos, accnos, biom, count, summary, file and taxonomy.\n"; + helpString += "The set.current command parameters are: current, clear, phylip, column, list, rabund, sabund, name, group, design, order, tree, shared, ordergroup, relabund, fasta, qfile, sff, oligos, accnos, biom, count, summary, file and taxonomy.\n"; + helpString += "The current parameter is used to input the output file from get.current. This function is intended to allow you to input filenames from previous instances on mothur. NOTE: If you have a current file set in the file *.current_files.summary file, and also set a value for that file type, the value set takes precedence. For example, if you run set.current(current=current_files.summary, fasta=abrecovery.fasta) and your have fasta=final.fasta in the *.current_files.summary file the current fasta file will be set to abrecovery.fasta.\n"; helpString += "The clear paramter is used to indicate which file types you would like to clear values for, multiple types can be separated by dashes.\n"; helpString += "The set.current command should be in the following format: \n"; helpString += "set.current(fasta=yourFastaFile) or set.current(fasta=amazon.fasta, clear=name-accnos)\n"; @@ -75,6 +77,8 @@ SetCurrentCommand::SetCurrentCommand(){ try { abort = true; calledHelp = true; setParameters(); + vector tempOutNames; + outputTypes["summary"] = tempOutNames; } catch(exception& e) { m->errorOut(e, "SetCurrentCommand", "SetCurrentCommand"); @@ -82,6 +86,21 @@ SetCurrentCommand::SetCurrentCommand(){ } } //********************************************************************************************************************** +string SetCurrentCommand::getOutputPattern(string type) { + try { + string pattern = ""; + + if (type == "summary") { pattern = "[filename],current_files.summary"; } + else { m->mothurOut("[ERROR]: No definition for type " + type + " output pattern.\n"); m->control_pressed = true; } + + return pattern; + } + catch(exception& e) { + m->errorOut(e, "SetCurrentCommand", "getOutputPattern"); + exit(1); + } +} +//********************************************************************************************************************** SetCurrentCommand::SetCurrentCommand(string option) { try { abort = false; calledHelp = false; @@ -104,6 +123,8 @@ SetCurrentCommand::SetCurrentCommand(string option) { if (validParameter.isValidParameter(it->first, myArray, it->second) != true) { abort = true; } } + vector tempOutNames; + outputTypes["summary"] = tempOutNames; //if the user changes the input directory command factory will send this info to us in the output parameter string inputDir = validParameter.validFile(parameters, "inputdir", false); @@ -309,7 +330,23 @@ SetCurrentCommand::SetCurrentCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["file"] = inputDir + it->second; } } + + it = parameters.find("current"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["current"] = inputDir + it->second; } + } } + + currentFile = validParameter.validFile(parameters, "current", true); + if (currentFile == "not open") { m->mothurOut("Ignoring: " + parameters["current"]); m->mothurOutEndLine(); currentFile = ""; } + else if (currentFile == "not found") { currentFile = ""; } + if (currentFile != "") { readCurrentFiles(); } //setting variables overwrites the settings in the file. + + //if the user changes the output directory command factory will send this info to us in the output parameter + outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = ""; } //check for parameters phylipfile = validParameter.validFile(parameters, "phylip", true); @@ -453,7 +490,7 @@ int SetCurrentCommand::execute(){ try { if (abort == true) { if (calledHelp) { return 0; } return 2; } - + //user wants to clear a type if (types.size() != 0) { for (int i = 0; i < types.size(); i++) { @@ -518,9 +555,22 @@ int SetCurrentCommand::execute(){ } } } - + m->mothurOutEndLine(); m->mothurOut("Current files saved by mothur:"); m->mothurOutEndLine(); - m->printCurrentFiles(); + + if (m->hasCurrentFiles()) { + map variables; + variables["[filename]"] = m->getFullPathName(outputDir); + string filename = getOutputFileName("summary", variables); + + m->printCurrentFiles(filename); + outputNames.push_back(filename); outputTypes["summary"].push_back(filename); + + m->mothurOutEndLine(); + m->mothurOut("Output File Names: "); m->mothurOutEndLine(); + for (int i = 0; i < outputNames.size(); i++) { m->mothurOut(outputNames[i]); m->mothurOutEndLine(); } + m->mothurOutEndLine(); + } return 0; } @@ -530,7 +580,92 @@ int SetCurrentCommand::execute(){ exit(1); } } +//********************************************************************************************************************** +int SetCurrentCommand::readCurrentFiles(){ + try{ + + ifstream in; + m->openInputFile(currentFile, in); + + + while(!in.eof()) { + + if (m->control_pressed) { break; } + + string line = m->getline(in); m->gobble(in); + + vector pieces; + m->splitAtChar(line, pieces, '='); + + if (pieces.size() != 2) { m->mothurOut("[ERROR]: " + m->getStringFromVector(pieces, ",") + " line is not in the correct format. Did you edit the file? Mothur expects tag=filename. Example: fasta=final.fasta\n"); m->control_pressed = true; } + else{ + //look for file types + if (pieces[0] == "fasta") { + m->setFastaFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "qfile") { + m->setQualFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "phylip") { + m->setPhylipFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "column") { + m->setColumnFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "list") { + m->setListFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "rabund") { + m->setRabundFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "sabund") { + m->setSabundFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "name") { + m->setNameFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "group") { + m->setGroupFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "order") { + m->setOrderFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "ordergroup") { + m->setOrderGroupFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "tree") { + m->setTreeFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "shared") { + m->setSharedFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "relabund") { + m->setRelAbundFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "design") { + m->setDesignFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "sff") { + m->setSFFFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "oligos") { + m->setOligosFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "accnos") { + m->setAccnosFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "taxonomy") { + m->setTaxonomyFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "flow") { + m->setFlowFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "biom") { + m->setBiomFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "count") { + m->setCountTableFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "summary") { + m->setSummaryFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "file") { + m->setFileFile(m->getFullPathName(pieces[1])); + }else if (pieces[0] == "processors") { + m->setProcessors(pieces[1]); + }else { + m->mothurOut("[ERROR]: mothur does not save a current file for " + m->getFullPathName(pieces[1])); m->mothurOutEndLine(); + } + } + } + in.close(); + + return 0; + } + + catch(exception& e) { + m->errorOut(e, "SetCurrentCommand", "readCurrentFiles"); + exit(1); + } +} //********************************************************************************************************************** diff --git a/source/commands/setcurrentcommand.h b/source/commands/setcurrentcommand.h index 0cdd257f..0370e58a 100644 --- a/source/commands/setcurrentcommand.h +++ b/source/commands/setcurrentcommand.h @@ -25,7 +25,7 @@ class SetCurrentCommand : public Command { string getCommandCategory() { return "General"; } string getHelpString(); - string getOutputPattern(string){ return ""; } + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Set.current"; } string getDescription() { return "set current files for mothur"; } @@ -40,9 +40,10 @@ class SetCurrentCommand : public Command { string clearTypes; vector types; - string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile, countfile, summaryfile; + string accnosfile, phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, designfile, taxonomyfile, biomfile, countfile, summaryfile, currentFile, outputDir; string orderfile, treefile, sharedfile, ordergroupfile, relabundfile, fastafile, qualfile, sfffile, oligosfile, processors, flowfile, filefile; + int readCurrentFiles(); }; diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 50f8b9e4..6298f401 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -58,35 +58,68 @@ set MothurOut::getCurrentTypes() { } } /*********************************************************************************************/ -void MothurOut::printCurrentFiles() { +void MothurOut::printCurrentFiles(string filename) { try { - - if (accnosfile != "") { mothurOut("accnos=" + accnosfile); mothurOutEndLine(); } - if (columnfile != "") { mothurOut("column=" + columnfile); mothurOutEndLine(); } - if (designfile != "") { mothurOut("design=" + designfile); mothurOutEndLine(); } - if (fastafile != "") { mothurOut("fasta=" + fastafile); mothurOutEndLine(); } - if (groupfile != "") { mothurOut("group=" + groupfile); mothurOutEndLine(); } - if (listfile != "") { mothurOut("list=" + listfile); mothurOutEndLine(); } - if (namefile != "") { mothurOut("name=" + namefile); mothurOutEndLine(); } - if (oligosfile != "") { mothurOut("oligos=" + oligosfile); mothurOutEndLine(); } - if (orderfile != "") { mothurOut("order=" + orderfile); mothurOutEndLine(); } - if (ordergroupfile != "") { mothurOut("ordergroup=" + ordergroupfile); mothurOutEndLine(); } - if (phylipfile != "") { mothurOut("phylip=" + phylipfile); mothurOutEndLine(); } - if (qualfile != "") { mothurOut("qfile=" + qualfile); mothurOutEndLine(); } - if (rabundfile != "") { mothurOut("rabund=" + rabundfile); mothurOutEndLine(); } - if (relabundfile != "") { mothurOut("relabund=" + relabundfile); mothurOutEndLine(); } - if (sabundfile != "") { mothurOut("sabund=" + sabundfile); mothurOutEndLine(); } - if (sfffile != "") { mothurOut("sff=" + sfffile); mothurOutEndLine(); } - if (sharedfile != "") { mothurOut("shared=" + sharedfile); mothurOutEndLine(); } - if (taxonomyfile != "") { mothurOut("taxonomy=" + taxonomyfile); mothurOutEndLine(); } - if (treefile != "") { mothurOut("tree=" + treefile); mothurOutEndLine(); } - if (flowfile != "") { mothurOut("flow=" + flowfile); mothurOutEndLine(); } - if (biomfile != "") { mothurOut("biom=" + biomfile); mothurOutEndLine(); } - if (counttablefile != "") { mothurOut("count=" + counttablefile); mothurOutEndLine(); } - if (processors != "1") { mothurOut("processors=" + processors); mothurOutEndLine(); } - if (summaryfile != "") { mothurOut("summary=" + summaryfile); mothurOutEndLine(); } - if (filefile != "") { mothurOut("file=" + filefile); mothurOutEndLine(); } + if (filename != "") { + ofstream out; + openOutputFile(filename, out); + + if (accnosfile != "") { mothurOut("accnos=" + accnosfile, out); mothurOutEndLine(out); } + if (columnfile != "") { mothurOut("column=" + columnfile, out); mothurOutEndLine(out); } + if (designfile != "") { mothurOut("design=" + designfile, out); mothurOutEndLine(out); } + if (fastafile != "") { mothurOut("fasta=" + fastafile, out); mothurOutEndLine(out); } + if (groupfile != "") { mothurOut("group=" + groupfile, out); mothurOutEndLine(out); } + if (listfile != "") { mothurOut("list=" + listfile, out); mothurOutEndLine(out); } + if (namefile != "") { mothurOut("name=" + namefile, out); mothurOutEndLine(out); } + if (oligosfile != "") { mothurOut("oligos=" + oligosfile, out); mothurOutEndLine(out); } + if (orderfile != "") { mothurOut("order=" + orderfile, out); mothurOutEndLine(out); } + if (ordergroupfile != "") { mothurOut("ordergroup=" + ordergroupfile, out); mothurOutEndLine(out); } + if (phylipfile != "") { mothurOut("phylip=" + phylipfile, out); mothurOutEndLine(out); } + if (qualfile != "") { mothurOut("qfile=" + qualfile, out); mothurOutEndLine(out); } + if (rabundfile != "") { mothurOut("rabund=" + rabundfile, out); mothurOutEndLine(out); } + if (relabundfile != "") { mothurOut("relabund=" + relabundfile, out); mothurOutEndLine(out); } + if (sabundfile != "") { mothurOut("sabund=" + sabundfile, out); mothurOutEndLine(out); } + if (sfffile != "") { mothurOut("sff=" + sfffile, out); mothurOutEndLine(out); } + if (sharedfile != "") { mothurOut("shared=" + sharedfile, out); mothurOutEndLine(out); } + if (taxonomyfile != "") { mothurOut("taxonomy=" + taxonomyfile, out); mothurOutEndLine(out); } + if (treefile != "") { mothurOut("tree=" + treefile, out); mothurOutEndLine(out); } + if (flowfile != "") { mothurOut("flow=" + flowfile, out); mothurOutEndLine(out); } + if (biomfile != "") { mothurOut("biom=" + biomfile, out); mothurOutEndLine(out); } + if (counttablefile != "") { mothurOut("count=" + counttablefile, out); mothurOutEndLine(out); } + if (processors != "1") { mothurOut("processors=" + processors, out); mothurOutEndLine(out); } + if (summaryfile != "") { mothurOut("summary=" + summaryfile, out); mothurOutEndLine(out); } + if (filefile != "") { mothurOut("file=" + filefile, out); mothurOutEndLine(out); } + + out.close(); + + }else { + if (accnosfile != "") { mothurOut("accnos=" + accnosfile); mothurOutEndLine(); } + if (columnfile != "") { mothurOut("column=" + columnfile); mothurOutEndLine(); } + if (designfile != "") { mothurOut("design=" + designfile); mothurOutEndLine(); } + if (fastafile != "") { mothurOut("fasta=" + fastafile); mothurOutEndLine(); } + if (groupfile != "") { mothurOut("group=" + groupfile); mothurOutEndLine(); } + if (listfile != "") { mothurOut("list=" + listfile); mothurOutEndLine(); } + if (namefile != "") { mothurOut("name=" + namefile); mothurOutEndLine(); } + if (oligosfile != "") { mothurOut("oligos=" + oligosfile); mothurOutEndLine(); } + if (orderfile != "") { mothurOut("order=" + orderfile); mothurOutEndLine(); } + if (ordergroupfile != "") { mothurOut("ordergroup=" + ordergroupfile); mothurOutEndLine(); } + if (phylipfile != "") { mothurOut("phylip=" + phylipfile); mothurOutEndLine(); } + if (qualfile != "") { mothurOut("qfile=" + qualfile); mothurOutEndLine(); } + if (rabundfile != "") { mothurOut("rabund=" + rabundfile); mothurOutEndLine(); } + if (relabundfile != "") { mothurOut("relabund=" + relabundfile); mothurOutEndLine(); } + if (sabundfile != "") { mothurOut("sabund=" + sabundfile); mothurOutEndLine(); } + if (sfffile != "") { mothurOut("sff=" + sfffile); mothurOutEndLine(); } + if (sharedfile != "") { mothurOut("shared=" + sharedfile); mothurOutEndLine(); } + if (taxonomyfile != "") { mothurOut("taxonomy=" + taxonomyfile); mothurOutEndLine(); } + if (treefile != "") { mothurOut("tree=" + treefile); mothurOutEndLine(); } + if (flowfile != "") { mothurOut("flow=" + flowfile); mothurOutEndLine(); } + if (biomfile != "") { mothurOut("biom=" + biomfile); mothurOutEndLine(); } + if (counttablefile != "") { mothurOut("count=" + counttablefile); mothurOutEndLine(); } + if (processors != "1") { mothurOut("processors=" + processors); mothurOutEndLine(); } + if (summaryfile != "") { mothurOut("summary=" + summaryfile); mothurOutEndLine(); } + if (filefile != "") { mothurOut("file=" + filefile); mothurOutEndLine(); } + } } catch(exception& e) { diff --git a/source/mothurout.h b/source/mothurout.h index 8b3de543..c6c0a8b0 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -276,7 +276,7 @@ class MothurOut { void setCountTableFile(string f) { counttablefile = getFullPathName(f); groupMode = "count"; } void setProcessors(string p) { processors = p; mothurOut("\nUsing " + toString(p) + " processors.\n"); } - void printCurrentFiles(); + void printCurrentFiles(string); //string="" for just to logfile. bool hasCurrentFiles(); void clearCurrentFiles(); set getCurrentTypes(); From c7e09a149209dd2f9073091bbcad030d42ab45e1 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 29 Feb 2016 13:39:19 -0500 Subject: [PATCH 111/135] Adds includescrap parameter to make.sra #109 --- source/commands/sracommand.cpp | 352 +++++++++++++++++++++-------------------- source/commands/sracommand.h | 2 +- 2 files changed, 184 insertions(+), 170 deletions(-) diff --git a/source/commands/sracommand.cpp b/source/commands/sracommand.cpp index 02c78945..1cff894b 100644 --- a/source/commands/sracommand.cpp +++ b/source/commands/sracommand.cpp @@ -19,6 +19,7 @@ vector SRACommand::setParameters(){ CommandParameter pfastq("fastq", "InputTypes", "", "", "sffFastQFile", "sffFastQFile", "none","xml",false,false); parameters.push_back(pfastq); CommandParameter pcontact("project", "InputTypes", "", "", "none", "none", "none","xml",false,true,true); parameters.push_back(pcontact); CommandParameter preorient("checkorient", "Boolean", "", "F", "", "", "","",false,false,true); parameters.push_back(preorient); + CommandParameter pincludescrap("includescrap", "Boolean", "", "T", "", "", "","",false,false,true); parameters.push_back(pincludescrap); CommandParameter pmimark("mimark", "InputTypes", "", "", "none", "none", "none","xml",false,true,true); parameters.push_back(pmimark); //choose only one multiple options CommandParameter pplatform("platform", "Multiple", "_LS454-ILLUMINA-ION_TORRENT-PACBIO_SMRT", "_LS454", "", "", "","",false,false); parameters.push_back(pplatform); @@ -53,7 +54,7 @@ string SRACommand::getHelpString(){ try { string helpString = ""; helpString += "The make.sra command creates the necessary files for a NCBI submission. The xml file and individual sff or fastq files parsed from the original sff or fastq file.\n"; - helpString += "The make.sra command parameters are: sff, fastq, file, oligos, project, mimarksfile, pdiffs, bdiffs, ldiffs, sdiffs, tdiffs, checkorient, platform, orientation, libstrategy, datatype, libsource, libselection and instrument.\n"; + helpString += "The make.sra command parameters are: sff, fastq, file, oligos, project, mimarksfile, pdiffs, bdiffs, ldiffs, sdiffs, tdiffs, checkorient, platform, orientation, libstrategy, datatype, libsource, libselection, instrument and includescrap.\n"; helpString += "The sff parameter is used to provide the original sff file.\n"; helpString += "The fastq parameter is used to provide the original fastq file.\n"; helpString += "The project parameter is used to provide your project file.\n"; @@ -66,6 +67,7 @@ string SRACommand::getHelpString(){ helpString += "The ldiffs parameter is used to specify the number of differences allowed in the linker. The default is 0.\n"; helpString += "The sdiffs parameter is used to specify the number of differences allowed in the spacer. The default is 0.\n"; helpString += "The checkorient parameter will check look for the reverse compliment of the barcode or primer in the sequence. The default is false.\n"; + helpString += "The includescrap parameter is used to indicate whether or not to include the scrapped sequences in your submission. The default is true.\n"; helpString += "The platform parameter is used to specify platform you are using choices are: _LS454,ILLUMINA,ION_TORRENT,PACBIO_SMRT. Default=_LS454. This is a controlled vocabulary section in the XML file that will be generated.\n"; helpString += "The orientation parameter is used to specify sequence orientation. Choices are: forward and reverse. Default=forward. This is a controlled vocabulary section in the XML file that will be generated.\n"; helpString += "The instrument parameter is used to specify instrument. Choices are 454_GS-454_GS_20-454_GS_FLX-454_GS_FLX_Titanium-454_GS_Junior-Illumina_Genome_Analyzer-Illumina_Genome_Analyzer_II-Illumina_Genome_Analyzer_IIx-Illumina_HiSeq_2000-Illumina_HiSeq_1000-Illumina_MiSeq-PacBio_RS-Ion_Torrent_PGM-unspecified. Default=454_GS. This is a controlled vocabulary section in the XML file that will be generated. \n"; @@ -286,6 +288,9 @@ SRACommand::SRACommand(string option) { if(tdiffs == 0){ tdiffs = bdiffs + pdiffs + ldiffs + sdiffs; } checkorient = validParameter.validFile(parameters, "checkorient", false); if (temp == "not found") { temp = "F"; } + + temp = validParameter.validFile(parameters, "includescrap", false); if (temp == "not found") { temp = "T"; } + includeScrap = m->isTrue(temp); } @@ -410,45 +415,48 @@ int SRACommand::execute(){ //////////////////////////////////////////////////////// for (int i = 0; i < Groups.size(); i++) { - if (m->control_pressed) { break; } - out << "\t\n"; - out << "\t\t\n"; - out << "\t\t\t\n"; - out << "\t\t\t\t\n"; - out << "\t\t\t\t\t\n"; - out << "\t\t\t\t\t\t\n"; - out << "\t\t\t\t\t\t" + Groups[i] + " \n"; - out << "\t\t\t\t\t\t\n"; - out << "\t\t\t\t\t\t\n"; - out << "\t\t\t\t\t\t\t" + mimarks[Groups[i]]["sample_title"] + " \n"; - out << "\t\t\t\t\t\t\t

" + mimarks[Groups[i]]["description"] + "

 \n"; - out << "\t\t\t\t\t\t\n"; - out << "\t\t\t\t\t\t\n"; - string organismName = "metagenome"; - map::iterator itOrganism = Group2Organism.find(Groups[i]); - if (itOrganism != Group2Organism.end()) { organismName = itOrganism->second; } //user supplied acceptable organism, so use it. - out << "\t\t\t\t\t\t\t" + organismName + " \n"; - out << "\t\t\t\t\t\t\n"; - out << "\t\t\t\t\t\t" + packageType + "\n"; - out << "\t\t\t\t\t\t\n"; - //add biosample required attributes - map >:: iterator it = mimarks.find(Groups[i]); - if (it != mimarks.end()) { - map categories = it->second; - for (map:: iterator it2 = categories.begin(); it2 != categories.end(); it2++) { - if (m->control_pressed) { break; } - out << "\t\t\t\t\t\t\tfirst + "\">" + it2->second + "\n"; + if ((!includeScrap) && (Groups[i] == "scrap")) {} //ignore scrap + else { + if (m->control_pressed) { break; } + out << "\t\n"; + out << "\t\t\n"; + out << "\t\t\t\n"; + out << "\t\t\t\t\n"; + out << "\t\t\t\t\t\n"; + out << "\t\t\t\t\t\t\n"; + out << "\t\t\t\t\t\t" + Groups[i] + " \n"; + out << "\t\t\t\t\t\t\n"; + out << "\t\t\t\t\t\t\n"; + out << "\t\t\t\t\t\t\t" + mimarks[Groups[i]]["sample_title"] + " \n"; + out << "\t\t\t\t\t\t\t

" + mimarks[Groups[i]]["description"] + "

 \n"; + out << "\t\t\t\t\t\t\n"; + out << "\t\t\t\t\t\t\n"; + string organismName = "metagenome"; + map::iterator itOrganism = Group2Organism.find(Groups[i]); + if (itOrganism != Group2Organism.end()) { organismName = itOrganism->second; } //user supplied acceptable organism, so use it. + out << "\t\t\t\t\t\t\t" + organismName + " \n"; + out << "\t\t\t\t\t\t\n"; + out << "\t\t\t\t\t\t" + packageType + "\n"; + out << "\t\t\t\t\t\t\n"; + //add biosample required attributes + map >:: iterator it = mimarks.find(Groups[i]); + if (it != mimarks.end()) { + map categories = it->second; + for (map:: iterator it2 = categories.begin(); it2 != categories.end(); it2++) { + if (m->control_pressed) { break; } + out << "\t\t\t\t\t\t\tfirst + "\">" + it2->second + "\n"; + } } + out << "\t\t\t\t\t\t\n"; + out << "\t\t\t\t\t\n"; + out << "\t\t\t\t\n"; + out << "\t\t\t\n"; + out << "\t\t\t\n"; + out << "\t\t\t\t" + Groups[i] + "\n"; + out << "\t\t\t\n"; + out << "\t\t\n"; + out << "\t\n"; } - out << "\t\t\t\t\t\t\n"; - out << "\t\t\t\t\t\n"; - out << "\t\t\t\t\n"; - out << "\t\t\t\n"; - out << "\t\t\t\n"; - out << "\t\t\t\t" + Groups[i] + "\n"; - out << "\t\t\t\n"; - out << "\t\t\n"; - out << "\t\n"; } map::iterator itGroup; @@ -456,147 +464,151 @@ int SRACommand::execute(){ //////////////////////////////////////////////////////// for (int i = 0; i < Groups.size(); i++) { - vector thisGroupsFiles = filesBySample[Groups[i]]; - string thisGroupsBarcode, thisGroupsPrimer; - if (libLayout == "paired") { thisGroupsBarcode = "."; thisGroupsPrimer = "."; } - else { thisGroupsBarcode = ""; thisGroupsPrimer = ""; } - - itGroup = Group2Barcode.find(Groups[i]); - if (itGroup != Group2Barcode.end()) { - if (fileOption != 5) { thisGroupsBarcode = itGroup->second; } //don't include barcodes if using index files. - } - - itGroup = Group2Primer.find(Groups[i]); - if (itGroup != Group2Primer.end()) { thisGroupsPrimer = itGroup->second; } - - //cout << Groups[i] << '\t' << thisGroupsFiles.size() << endl; - - for (int j = 0; j < thisGroupsFiles.size(); j++) { - string libId = m->getSimpleName(thisGroupsFiles[j]) + "." + Groups[i]; + if ((!includeScrap) && (Groups[i] == "scrap")) {} //ignore scrap + else { - if (m->control_pressed) { break; } - out << "\t\n"; - out << "\t\t\n"; - if (libLayout == "paired") { //adjust the libID because the thisGroupsFiles[j] contains two filenames - vector pieces = m->splitWhiteSpace(thisGroupsFiles[j]); - libId = m->getSimpleName(pieces[0]) + "." + Groups[i]; - out << "\t\t\tgetSimpleName(pieces[0]) + "\">\n"; - out << "\t\t\t\tgeneric-data \n"; - out << "\t\t\t\n"; - out << "\t\t\tgetSimpleName(pieces[1]) + "\">\n"; - out << "\t\t\t\tgeneric-data \n"; - out << "\t\t\t\n"; - - //attributes - if (linkers.size() != 0) { - string linkerString = ""; - //linker size forced to 1 - for (int k = 0; k < linkers.size(); k++) { linkerString += linkers[k] + ";"; } linkerString = linkerString.substr(0, linkerString.length()-1); - out << "\t\t\t" + linkerString + "\n"; - out << "\t\t\t" + toString(ldiffs) + "\n"; - } + vector thisGroupsFiles = filesBySample[Groups[i]]; + string thisGroupsBarcode, thisGroupsPrimer; + if (libLayout == "paired") { thisGroupsBarcode = "."; thisGroupsPrimer = "."; } + else { thisGroupsBarcode = ""; thisGroupsPrimer = ""; } + + itGroup = Group2Barcode.find(Groups[i]); + if (itGroup != Group2Barcode.end()) { + if (fileOption != 5) { thisGroupsBarcode = itGroup->second; } //don't include barcodes if using index files. + } + + itGroup = Group2Primer.find(Groups[i]); + if (itGroup != Group2Primer.end()) { thisGroupsPrimer = itGroup->second; } + + //cout << Groups[i] << '\t' << thisGroupsFiles.size() << endl; + + for (int j = 0; j < thisGroupsFiles.size(); j++) { + string libId = m->getSimpleName(thisGroupsFiles[j]) + "." + Groups[i]; - if (thisGroupsBarcode != ".") { - string barcodeString = ""; - vector thisBarcodes; m->splitAtChar(thisGroupsBarcode, thisBarcodes, '.'); - if (thisBarcodes[0] != "NONE") { barcodeString += thisBarcodes[0] + ";"; } - if (thisBarcodes[1] != "NONE") { barcodeString += thisBarcodes[1] + ";"; }//forward barcode + reverse barcode + if (m->control_pressed) { break; } + out << "\t\n"; + out << "\t\t\n"; + if (libLayout == "paired") { //adjust the libID because the thisGroupsFiles[j] contains two filenames + vector pieces = m->splitWhiteSpace(thisGroupsFiles[j]); + libId = m->getSimpleName(pieces[0]) + "." + Groups[i]; + out << "\t\t\tgetSimpleName(pieces[0]) + "\">\n"; + out << "\t\t\t\tgeneric-data \n"; + out << "\t\t\t\n"; + out << "\t\t\tgetSimpleName(pieces[1]) + "\">\n"; + out << "\t\t\t\tgeneric-data \n"; + out << "\t\t\t\n"; - barcodeString = barcodeString.substr(0, barcodeString.length()-1); - out << "\t\t\t" + barcodeString + "\n"; - out << "\t\t\t" + toString(bdiffs) + "\n"; - } - if (spacers.size() != 0) { - string spacerString = ""; - //spacer size forced to 1 - for (int k = 0; k < spacers.size(); k++) { spacerString += spacers[k] + ";"; } spacerString = spacerString.substr(0, spacerString.length()-1); - out << "\t\t\t" + spacerString + "\n"; - out << "\t\t\t" + toString(sdiffs) + "\n"; - } - - if (thisGroupsPrimer != ".") { - string primerString = ""; + //attributes + if (linkers.size() != 0) { + string linkerString = ""; + //linker size forced to 1 + for (int k = 0; k < linkers.size(); k++) { linkerString += linkers[k] + ";"; } linkerString = linkerString.substr(0, linkerString.length()-1); + out << "\t\t\t" + linkerString + "\n"; + out << "\t\t\t" + toString(ldiffs) + "\n"; + } + + if (thisGroupsBarcode != ".") { + string barcodeString = ""; + vector thisBarcodes; m->splitAtChar(thisGroupsBarcode, thisBarcodes, '.'); + if (thisBarcodes[0] != "NONE") { barcodeString += thisBarcodes[0] + ";"; } + if (thisBarcodes[1] != "NONE") { barcodeString += thisBarcodes[1] + ";"; }//forward barcode + reverse barcode + + barcodeString = barcodeString.substr(0, barcodeString.length()-1); + out << "\t\t\t" + barcodeString + "\n"; + out << "\t\t\t" + toString(bdiffs) + "\n"; + } + if (spacers.size() != 0) { + string spacerString = ""; + //spacer size forced to 1 + for (int k = 0; k < spacers.size(); k++) { spacerString += spacers[k] + ";"; } spacerString = spacerString.substr(0, spacerString.length()-1); + out << "\t\t\t" + spacerString + "\n"; + out << "\t\t\t" + toString(sdiffs) + "\n"; + } + + if (thisGroupsPrimer != ".") { + string primerString = ""; + + vector thisPrimers; m->splitAtChar(thisGroupsPrimer, thisPrimers, '.'); + if (thisPrimers[0] != "") { primerString += thisPrimers[0] + ";"; } + if (thisPrimers[1] != "") { primerString += thisPrimers[1] + ";"; } + + if (primerString != "") { + primerString = primerString.substr(0, primerString.length()-1); + out << "\t\t\t" + primerString + "\n"; + out << "\t\t\t" + toString(pdiffs) + "\n"; + } + } + out << "\t\t\t" + libId + "\n"; + out << "\t\t\t" + libStrategy + "\n"; + out << "\t\t\t" + libSource + "\n"; + out << "\t\t\t" + libSelection + "\n"; + out << "\t\t\t" + libLayout + "\n"; + out << "\t\t\t" + instrumentModel + "\n"; + out << "\t\t\t" + mimarks[Groups[i]]["seq_methods"] + "\n"; + + }else { //single + out << "\t\t\tgetSimpleName(thisGroupsFiles[j]) + "\">\n"; + out << "\t\t\t\tgeneric-data \n"; + out << "\t\t\t\n"; + //attributes + //linkers -> barcodes -> spacers -> primers - vector thisPrimers; m->splitAtChar(thisGroupsPrimer, thisPrimers, '.'); - if (thisPrimers[0] != "") { primerString += thisPrimers[0] + ";"; } - if (thisPrimers[1] != "") { primerString += thisPrimers[1] + ";"; } + if (linkers.size() != 0) { + string linkerString = ""; + for (int k = 0; k < linkers.size(); k++) { linkerString += linkers[k] + ";"; } linkerString = linkerString.substr(0, linkerString.length()-1); + out << "\t\t\t" + linkerString + "\n"; + out << "\t\t\t" + toString(ldiffs) + "\n"; + } - if (primerString != "") { - primerString = primerString.substr(0, primerString.length()-1); - out << "\t\t\t" + primerString + "\n"; + if (thisGroupsBarcode != "") { + out << "\t\t\t" + thisGroupsBarcode + "\n"; + out << "\t\t\t" + toString(bdiffs) + "\n"; + } + if (spacers.size() != 0) { + string spacerString = ""; + for (int k = 0; k < spacers.size(); k++) { spacerString += spacers[k] + ";"; } spacerString = spacerString.substr(0, spacerString.length()-1); + out << "\t\t\t" + spacerString + "\n"; + out << "\t\t\t" + toString(sdiffs) + "\n"; + } + + if (thisGroupsPrimer != "") { + out << "\t\t\t" + thisGroupsPrimer + "\n"; out << "\t\t\t" + toString(pdiffs) + "\n"; + } - } - out << "\t\t\t" + libId + "\n"; - out << "\t\t\t" + libStrategy + "\n"; - out << "\t\t\t" + libSource + "\n"; - out << "\t\t\t" + libSelection + "\n"; - out << "\t\t\t" + libLayout + "\n"; - out << "\t\t\t" + instrumentModel + "\n"; - out << "\t\t\t" + mimarks[Groups[i]]["seq_methods"] + "\n"; - - }else { //single - out << "\t\t\tgetSimpleName(thisGroupsFiles[j]) + "\">\n"; - out << "\t\t\t\tgeneric-data \n"; - out << "\t\t\t\n"; - //attributes - //linkers -> barcodes -> spacers -> primers - - if (linkers.size() != 0) { - string linkerString = ""; - for (int k = 0; k < linkers.size(); k++) { linkerString += linkers[k] + ";"; } linkerString = linkerString.substr(0, linkerString.length()-1); - out << "\t\t\t" + linkerString + "\n"; - out << "\t\t\t" + toString(ldiffs) + "\n"; - } - - if (thisGroupsBarcode != "") { - out << "\t\t\t" + thisGroupsBarcode + "\n"; - out << "\t\t\t" + toString(bdiffs) + "\n"; - } - if (spacers.size() != 0) { - string spacerString = ""; - for (int k = 0; k < spacers.size(); k++) { spacerString += spacers[k] + ";"; } spacerString = spacerString.substr(0, spacerString.length()-1); - out << "\t\t\t" + spacerString + "\n"; - out << "\t\t\t" + toString(sdiffs) + "\n"; - } - - if (thisGroupsPrimer != "") { - out << "\t\t\t" + thisGroupsPrimer + "\n"; - out << "\t\t\t" + toString(pdiffs) + "\n"; + //out << "\t\t\t" + orientation + "\n"; + out << "\t\t\t" + libId + "\n"; + out << "\t\t\t" + libStrategy + "\n"; + out << "\t\t\t" + libSource + "\n"; + out << "\t\t\t" + libSelection + "\n"; + out << "\t\t\t" + libLayout + "\n"; + out << "\t\t\t" + instrumentModel + "\n"; + out << "\t\t\t" + mimarks[Groups[i]]["seq_methods"] + "\n"; } - //out << "\t\t\t" + orientation + "\n"; - out << "\t\t\t" + libId + "\n"; - out << "\t\t\t" + libStrategy + "\n"; - out << "\t\t\t" + libSource + "\n"; - out << "\t\t\t" + libSelection + "\n"; - out << "\t\t\t" + libLayout + "\n"; - out << "\t\t\t" + instrumentModel + "\n"; - out << "\t\t\t" + mimarks[Groups[i]]["seq_methods"] + "\n"; - - } - ///////////////////bioProject info - out << "\t\t\t\n"; - out << "\t\t\t\t\n"; - out << "\t\t\t\t\t" + projectName + " \n"; - out << "\t\t\t\t\n"; - out << "\t\t\t\n"; - //////////////////bioSample info - out << "\t\t\t\n"; - out << "\t\t\t\t\n"; - out << "\t\t\t\t\t" + Groups[i] + "\n"; - out << "\t\t\t\t\n"; - out << "\t\t\t\n"; - //libID - out << "\t\t\t\n"; - if (libLayout == "paired") { //adjust the libID because the thisGroupsFiles[j] contains two filenames - vector pieces = m->splitWhiteSpace(thisGroupsFiles[j]); - libId = m->getSimpleName(pieces[0]) + "." + Groups[i]; + ///////////////////bioProject info + out << "\t\t\t\n"; + out << "\t\t\t\t\n"; + out << "\t\t\t\t\t" + projectName + " \n"; + out << "\t\t\t\t\n"; + out << "\t\t\t\n"; + //////////////////bioSample info + out << "\t\t\t\n"; + out << "\t\t\t\t\n"; + out << "\t\t\t\t\t" + Groups[i] + "\n"; + out << "\t\t\t\t\n"; + out << "\t\t\t\n"; + //libID + out << "\t\t\t\n"; + if (libLayout == "paired") { //adjust the libID because the thisGroupsFiles[j] contains two filenames + vector pieces = m->splitWhiteSpace(thisGroupsFiles[j]); + libId = m->getSimpleName(pieces[0]) + "." + Groups[i]; + } + out << "\t\t\t\t" + libId + "\n"; + out << "\t\t\t\n"; + out << "\t\t\n"; + out << "\t\n"; } - out << "\t\t\t\t" + libId + "\n"; - out << "\t\t\t\n"; - out << "\t\t\n"; - out << "\t\n"; } } out << "\n"; @@ -858,6 +870,7 @@ int SRACommand::readMIMarksFile(){ } in.close(); + //add in values for "scrap" group map categories; //start after *sample_name @@ -870,6 +883,7 @@ int SRACommand::readMIMarksFile(){ mimarks["scrap"] = categories; Group2Organism["scrap"] = "metagenome"; + if (organismError) { string organismTypes = ""; for (int i = 0; i < acceptableOrganisms.size()-1; i++) { organismTypes += acceptableOrganisms[i] + ", "; } diff --git a/source/commands/sracommand.h b/source/commands/sracommand.h index 103981c9..56394bfb 100644 --- a/source/commands/sracommand.h +++ b/source/commands/sracommand.h @@ -41,7 +41,7 @@ class SRACommand : public Command { Grant(string i, string a, string t) : grantId(i), grantAgency(a), grantTitle(t) {} Grant() : grantId(""), grantAgency(""), grantTitle("") {} }; - bool abort, isSFF, pairedOligos, setOligosParameter; + bool abort, isSFF, pairedOligos, setOligosParameter, includeScrap; int tdiffs, bdiffs, pdiffs, sdiffs, ldiffs, fileOption; string sfffile, fastqfile, outputDir, file, oligosfile, contactfile, inputfile, mimarksfile; From 3a9398abb541c170aafecd6bc3cb10c56f7722e2 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 8 Mar 2016 15:43:33 -0500 Subject: [PATCH 112/135] Fixes cluster.split bug with sequences not assigned to group When I added the changes for the vsearch methods I added checks to make sure there were no singletons in that splitting case. The sequences mothur is complaining about have a tax level below the cutoff, and so they are not assigned to a group and should be singletons. I remembered the below the distance cutoff but forgot about the below the taxlevel cutoff. --- source/commands/clustersplitcommand.cpp | 2 +- source/read/splitmatrix.cpp | 17 +++++++++-------- source/read/splitmatrix.h | 4 ++-- 3 files changed, 12 insertions(+), 11 deletions(-) diff --git a/source/commands/clustersplitcommand.cpp b/source/commands/clustersplitcommand.cpp index 51bd1bb9..f62e3dda 100644 --- a/source/commands/clustersplitcommand.cpp +++ b/source/commands/clustersplitcommand.cpp @@ -474,7 +474,7 @@ int ClusterSplitCommand::execute(){ else if (splitmethod == "fasta") { if ((method == "agc") || (method == "dgc")) { if (!findVsearch()) { m->mothurOut("[ERROR] cannot find vsearch executable, aborting.\n"); return 0; } - split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir, "fasta"); + split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, "vsearch", processors, classic, outputDir, "fasta"); }else{ split = new SplitMatrix(fastafile, namefile, countfile, taxFile, taxLevelCutoff, cutoff, splitmethod, processors, classic, outputDir, "distance"); } diff --git a/source/read/splitmatrix.cpp b/source/read/splitmatrix.cpp index 5830c876..495af519 100644 --- a/source/read/splitmatrix.cpp +++ b/source/read/splitmatrix.cpp @@ -49,7 +49,7 @@ int SplitMatrix::split(){ if (method == "distance") { splitDistance(); - }else if ((method == "classify") || (method == "fasta")) { + }else if ((method == "classify") || (method == "fasta") || (method == "vsearch")) { splitClassify(); }else { m->mothurOut("Unknown splitting method, aborting split."); m->mothurOutEndLine(); @@ -229,7 +229,8 @@ int SplitMatrix::createDistanceFilesFromTax(map& seqGroup, int numG tempDistFiles.push_back(tempDistFile); } - splitNamesTax(seqGroup, numGroups, tempDistFiles); + if (method == "vsearch") { splitNamesVsearch(seqGroup, numGroups, tempDistFiles); } + else { splitNames(seqGroup, numGroups, tempDistFiles); } if (m->control_pressed) { for (int i = 0; i < dists.size(); i++) { m->mothurRemove((dists[i].begin()->first)); m->mothurRemove((dists[i].begin()->second)); } dists.clear(); } @@ -315,7 +316,7 @@ int SplitMatrix::splitDistanceFileByTax(map& seqGroup, int numGroup } } - splitNamesDist(seqGroup, numGroups, tempDistFiles); + splitNames(seqGroup, numGroups, tempDistFiles); if (m->control_pressed) { for (int i = 0; i < dists.size(); i++) { @@ -525,7 +526,7 @@ int SplitMatrix::splitDistanceLarge(){ } } - splitNamesDist(seqGroup, numGroups, tempDistFiles); + splitNames(seqGroup, numGroups, tempDistFiles); return 0; } @@ -535,7 +536,7 @@ int SplitMatrix::splitDistanceLarge(){ } } //******************************************************************************************************************** -int SplitMatrix::splitNamesDist(map& seqGroup, int numGroups, vector& tempDistFiles){ +int SplitMatrix::splitNames(map& seqGroup, int numGroups, vector& tempDistFiles){ try { ofstream outFile; map::iterator it; @@ -637,12 +638,12 @@ int SplitMatrix::splitNamesDist(map& seqGroup, int numGroups, vecto return 0; } catch(exception& e) { - m->errorOut(e, "SplitMatrix", "splitNamesDist"); + m->errorOut(e, "SplitMatrix", "splitNames"); exit(1); } } //******************************************************************************************************************** -int SplitMatrix::splitNamesTax(map& seqGroup, int numGroups, vector& tempDistFiles){ +int SplitMatrix::splitNamesVsearch(map& seqGroup, int numGroups, vector& tempDistFiles){ try { ofstream outFile; map::iterator it; @@ -864,7 +865,7 @@ int SplitMatrix::splitDistanceRAM(){ } } - splitNamesDist(seqGroup, numGroups, tempDistFiles); + splitNames(seqGroup, numGroups, tempDistFiles); return 0; } diff --git a/source/read/splitmatrix.h b/source/read/splitmatrix.h index cb996ba0..fa59984f 100644 --- a/source/read/splitmatrix.h +++ b/source/read/splitmatrix.h @@ -40,8 +40,8 @@ class SplitMatrix { int splitClassify(); int splitDistanceLarge(); int splitDistanceRAM(); - int splitNamesDist(map& groups, int, vector&); - int splitNamesTax(map& groups, int, vector&); + int splitNames(map& groups, int, vector&); + int splitNamesVsearch(map& groups, int, vector&); int splitDistanceFileByTax(map&, int); int createDistanceFilesFromTax(map&, int); }; From fd10c91c0e4f2e0a923a7a195a53b8fd9ee667a0 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 14 Mar 2016 08:57:37 -0400 Subject: [PATCH 113/135] Updates external makefile --- makefile => Makefile-external | 17 ++++++++++++++++- Mothur.xcodeproj/project.pbxproj | 8 ++++---- 2 files changed, 20 insertions(+), 5 deletions(-) rename makefile => Makefile-external (84%) diff --git a/makefile b/Makefile-external similarity index 84% rename from makefile rename to Makefile-external index 0e8260e8..f6ea261c 100644 --- a/makefile +++ b/Makefile-external @@ -9,8 +9,10 @@ # 64BIT_VERSION ?= yes +OPTIMIZE ?= yes USEREADLINE ?= yes USEBOOST ?= yes +BOOST_LIBRARY_DIR="\"Enter_your_boost_library_path_here\"" MOTHUR_FILES="\"Enter_your_default_path_here\"" RELEASE_DATE = "\"1/04/2016\"" VERSION = "\"1.37.0\"" @@ -19,6 +21,11 @@ ifeq ($(strip $(64BIT_VERSION)),yes) CXXFLAGS += -DBIT_VERSION endif +# Fastest +ifeq ($(strip $(OPTIMIZE)),yes) + CXXFLAGS += -O3 +endif + CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION} -O3 ifeq ($(strip $(MOTHUR_FILES)),"\"Enter_your_default_path_here\"") @@ -39,7 +46,15 @@ endif #The boost libraries allow you to read gz files. ifeq ($(strip $(USEBOOST)),yes) - LIBS += -lboost_iostreams + +#User specified boost library path +ifeq ($(strip $(BOOST_LIBRARY_DIR)),"\"Enter_your_boost_library_path_here\"") +else + LDFLAGS += ${BOOST_LIBRARY_DIR} +endif + + LIBS += -lboost_iostreams -lz + CXXFLAGS += -DUSE_BOOST endif # diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 04575b1a..f6ee8158 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -400,7 +400,7 @@ 83F25B0C163B031200ABE73D /* forest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 83F25B0A163B031200ABE73D /* forest.cpp */; }; A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotulabelscommand.cpp */; }; A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; }; - A70332B712D3A13400761E33 /* makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* makefile */; }; + A70332B712D3A13400761E33 /* Makefile-external in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* Makefile-external */; }; A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; }; A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7132EB2184E792700AAA402 /* communitytype.cpp */; }; A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; }; @@ -851,7 +851,7 @@ A70056E8156A93E300924A2D /* getotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getotulabelscommand.h; path = source/commands/getotulabelscommand.h; sourceTree = ""; }; A70056E9156AB6D400924A2D /* removeotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removeotulabelscommand.h; path = source/commands/removeotulabelscommand.h; sourceTree = ""; }; A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removeotulabelscommand.cpp; path = source/commands/removeotulabelscommand.cpp; sourceTree = ""; }; - A70332B512D3A13400761E33 /* makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = makefile; sourceTree = ""; }; + A70332B512D3A13400761E33 /* Makefile-external */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = "Makefile-external"; sourceTree = ""; }; A7128B1A16B7001200723BE4 /* getdistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getdistscommand.h; path = source/commands/getdistscommand.h; sourceTree = ""; }; A7128B1C16B7002600723BE4 /* getdistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getdistscommand.cpp; path = source/commands/getdistscommand.cpp; sourceTree = ""; }; A7132EAE184E76EB00AAA402 /* communitytype.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = communitytype.h; path = source/communitytype/communitytype.h; sourceTree = ""; }; @@ -1583,7 +1583,7 @@ isa = PBXGroup; children = ( A7A61F1A130035C800E05B6B /* LICENSE.md */, - A70332B512D3A13400761E33 /* makefile */, + A70332B512D3A13400761E33 /* Makefile-external */, 484F21691BA1C5F8001C1B5F /* makefile-internal */, 481623E31B58267D004C60B7 /* INSTALL.md */, 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */, @@ -3204,7 +3204,7 @@ A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */, A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */, A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */, - A70332B712D3A13400761E33 /* makefile in Sources */, + A70332B712D3A13400761E33 /* Makefile-external in Sources */, A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */, A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */, A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */, From 5f5d8679c28ad4a05da2486bedad839cb0500611 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 14 Mar 2016 12:00:03 -0400 Subject: [PATCH 114/135] Sets nameType at file setup to save processing time Fixes name mismatch bug #167 --- source/commands/makecontigscommand.cpp | 272 ++++++++++++++++++++++----------- source/commands/makecontigscommand.h | 12 +- 2 files changed, 195 insertions(+), 89 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 1b468787..631a26dc 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -26,7 +26,7 @@ vector MakeContigsCommand::setParameters(){ CommandParameter pbdiffs("bdiffs", "Number", "", "0", "", "", "","",false,false,true); parameters.push_back(pbdiffs); CommandParameter ptdiffs("tdiffs", "Number", "", "0", "", "", "","",false,false); parameters.push_back(ptdiffs); CommandParameter preorient("checkorient", "Boolean", "", "F", "", "", "","",false,false,true); parameters.push_back(preorient); - CommandParameter prename("rename", "Boolean", "", "T", "", "", "","",false,false,true); parameters.push_back(prename); + CommandParameter prename("rename", "Boolean", "", "F", "", "", "","",false,false,true); parameters.push_back(prename); CommandParameter palign("align", "Multiple", "needleman-gotoh-kmer", "needleman", "", "", "","",false,false); parameters.push_back(palign); CommandParameter pallfiles("allfiles", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(pallfiles); CommandParameter ptrimoverlap("trimoverlap", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(ptrimoverlap); @@ -77,7 +77,7 @@ string MakeContigsCommand::getHelpString(){ helpString += "The match parameter allows you to specify the bonus for having the same base. The default is 1.0.\n"; helpString += "The mistmatch parameter allows you to specify the penalty for having different bases. The default is -1.0.\n"; helpString += "The checkorient parameter will check look for the reverse compliment of the barcode or primer in the sequence. If found the sequence is flipped. The default is false.\n"; - helpString += "The rename parameter will rename the sequence to create smaller file sizes. Default=T.\n"; + helpString += "The rename parameter will rename the sequence to create smaller file sizes. Default=F.\n"; helpString += "The deltaq parameter allows you to specify the delta allowed between quality scores of a mismatched base. For example in the overlap, if deltaq=5 and in the alignment seqA, pos 200 has a quality score of 30 and the same position in seqB has a quality score of 20, you take the base from seqA (30-20 >= 5). If the quality score in seqB is 28 then the base in the consensus will be an N (30-28<5) The default is 6.\n"; helpString += "The gapopen parameter allows you to specify the penalty for opening a gap in an alignment. The default is -2.0.\n"; helpString += "The gapextend parameter allows you to specify the penalty for extending a gap in an alignment. The default is -1.0.\n"; @@ -393,7 +393,7 @@ MakeContigsCommand::MakeContigsCommand(string option) { temp = validParameter.validFile(parameters, "checkorient", false); if (temp == "not found") { temp = "F"; } reorient = m->isTrue(temp); - temp = validParameter.validFile(parameters, "rename", false); if (temp == "not found") { temp = "T"; } + temp = validParameter.validFile(parameters, "rename", false); if (temp == "not found") { temp = "F"; } renameSeq = m->isTrue(temp); if (allFiles && (oligosfile == "")) { m->mothurOut("[ERROR]: You can only use the allfiles option with an oligos file.\n"); abort = true; } @@ -1237,6 +1237,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vector > fileInputs, int start, int end, string compositeGroupFile, string compositeFastaFile, string compositeScrapFastaFile, string compositeQualFile, string compositeScrapQualFile, string compositeMisMatchFile, map& totalGroupCounts, map& theseAllFileNames) { try { unsigned long long numReads = 0; @@ -1255,6 +1256,9 @@ unsigned long long MakeContigsCommand::driverGroups(vector< vector > fil rindexfile = fileInputs[l][3]; group = file2Group[l]; + //find read name type to speed read matching later + nameType = setNameType(ffastqfile, rfastqfile, delim); + groupCounts.clear(); groupMap.clear(); @@ -2490,6 +2494,78 @@ bool MakeContigsCommand::read(Sequence& fSeq, Sequence& rSeq, QualityScores*& fQ } /**************************************************************************************************/ +bool MakeContigsCommand::setNameType(string forward, string reverse) { + try { + bool type = false; + + if (forward == reverse) { type = perfectMatch; } + else { + int pos = forward.find_last_of('#'); + string tempForward = forward; + if (pos != string::npos) { tempForward = forward.substr(0, pos); } + + int pos2 = reverse.find_last_of('#'); + string tempReverse = reverse; + if (pos2 != string::npos) { tempReverse = reverse.substr(0, pos2); } + + if (pos2 == pos) { poundMatchPos = pos; } + else { poundMatchPos = 0; } + + if (tempForward == tempReverse) { type = poundMatch; } + } + + return type; + } + catch(exception& e) { + m->errorOut(e, "MakeContigsCommand", "setNameType"); + exit(1); + } +} +/**************************************************************************************************/ + +bool MakeContigsCommand::setNameType(string forwardFile, string reverseFile, char delim) { + try { + bool type = false; bool error = false; + string forward = ""; string reverse = ""; + + ifstream inForward, inReverse; +#ifdef USE_BOOST + boost::iostreams::filtering_istream inFF, inRF; +#endif + if (!gz) { //plain text files + m->openInputFile(forwardFile, inForward); + m->openInputFile(reverseFile, inReverse); + + FastqRead fread(inForward, error, format); + forward = fread.getName(); + + FastqRead rread(inReverse, error, format); + reverse = rread.getName(); + + }else { //compressed files +#ifdef USE_BOOST + m->openInputFileBinary(forwardFile, inForward, inFF); + m->openInputFileBinary(reverseFile, inForward, inRF); + + FastqRead fread(inFF, error, format); + forward = fread.getName(); + + FastqRead rread(inRF, error, format); + reverse = rread.getName(); +#endif + } + + type = setNameType(forward, reverse); + + return type; + } + catch(exception& e) { + m->errorOut(e, "MakeContigsCommand", "setNameType"); + exit(1); + } +} +/**************************************************************************************************/ + int MakeContigsCommand::setLines(vector fasta, vector qual, vector& lines, vector& qLines, char delim) { try { lines.clear(); @@ -2499,6 +2575,8 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect vector temp; vector trimmedNamesFilePos; + string ForwardName = ""; string ReverseName = ""; + #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) //set file positions for fasta file fastaFilePos = m->divideFile(fasta[0], processors, delim); @@ -2521,6 +2599,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect name = name.substr(1); m->checkName(name); } + ForwardName = name; firstSeqNames[name] = i; trimmedNames[name.substr(0, name.length()-1)]; in.close(); @@ -2555,6 +2634,7 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect unsigned long long pos = in2.tellg(); trimmedNamesFilePos.push_back(pos - input.length() - 1); trimmedNames.erase(itTrimmed); + ReverseName = name; } } } @@ -2565,6 +2645,8 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect if ((firstSeqNames.size() != 0) && (trimmedNames.size() == 0)) { qfileFilePos = trimmedNamesFilePos; } + nameType = setNameType(ForwardName, ReverseName); + //get last file position of reverse fasta[1] FILE * pFile; unsigned long long size; @@ -3222,30 +3304,34 @@ bool MakeContigsCommand::getOligos(vector >& fastaFileNames, vect */ bool MakeContigsCommand::checkName(FastqRead& forward, FastqRead& reverse){ try { - if (forward.getName() == reverse.getName()) { - return true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName().substr(0, forward.getName().length()-1); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - if ((forward.getName()[forward.getName().length()-1] == '1') && (reverse.getName()[reverse.getName().length()-1] == '2')) { - forward.setName(tempFRead); - reverse.setName(tempRRead); - return true; - } - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName(); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - reverse.setName(tempRRead); - return true; + bool match = false; + + if (poundMatch) { + match = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + forward.setName(forward.getName().substr(0, poundMatchPos)); + reverse.setName(reverse.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = forward.getName(); + string reverseName = reverse.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + forward.setName(forwardName); + reverse.setName(reverseName); + }else{ + match = false; } } - } + }else if (perfectMatch) { match = perfectMatch; } - return false; + return match; } catch(exception& e) { m->errorOut(e, "MakeContigsCommand", "ckeckName"); @@ -3258,29 +3344,34 @@ bool MakeContigsCommand::checkName(FastqRead& forward, FastqRead& reverse){ */ bool MakeContigsCommand::checkName(Sequence& forward, Sequence& reverse){ try { - if (forward.getName() == reverse.getName()) { - return true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName().substr(0, forward.getName().length()-1); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - if ((forward.getName()[forward.getName().length()-1] == '1') && (reverse.getName()[reverse.getName().length()-1] == '2')) { - forward.setName(tempFRead); - reverse.setName(tempRRead); - return true; - } - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName(); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - reverse.setName(tempRRead); - return true; + bool match = false; + + if (poundMatch) { + match = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + forward.setName(forward.getName().substr(0, poundMatchPos)); + reverse.setName(reverse.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = forward.getName(); + string reverseName = reverse.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + forward.setName(forwardName); + reverse.setName(reverseName); + }else{ + match = false; } } - } + }else if (perfectMatch) { match = perfectMatch; } + return match; return false; } catch(exception& e) { @@ -3294,30 +3385,35 @@ bool MakeContigsCommand::checkName(Sequence& forward, Sequence& reverse){ */ bool MakeContigsCommand::checkName(QualityScores& forward, QualityScores& reverse){ try { - if (forward.getName() == reverse.getName()) { - return true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName().substr(0, forward.getName().length()-1); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - if ((forward.getName()[forward.getName().length()-1] == '1') && (reverse.getName()[reverse.getName().length()-1] == '2')) { - forward.setName(tempFRead); - reverse.setName(tempRRead); - return true; - } - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName(); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - reverse.setName(tempRRead); - return true; + bool match = false; + + if (poundMatch) { + match = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + forward.setName(forward.getName().substr(0, poundMatchPos)); + reverse.setName(reverse.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = forward.getName(); + string reverseName = reverse.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + forward.setName(forwardName); + reverse.setName(reverseName); + }else{ + match = false; } } - } + }else if (perfectMatch) { match = perfectMatch; } - return false; + return match; + } catch(exception& e) { m->errorOut(e, "MakeContigsCommand", "ckeckName"); @@ -3331,30 +3427,34 @@ bool MakeContigsCommand::checkName(QualityScores& forward, QualityScores& revers */ bool MakeContigsCommand::checkName(Sequence& forward, QualityScores& reverse){ try { - if (forward.getName() == reverse.getName()) { - return true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName().substr(0, forward.getName().length()-1); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - if ((forward.getName()[forward.getName().length()-1] == '1') && (reverse.getName()[reverse.getName().length()-1] == '2')) { - forward.setName(tempFRead); - reverse.setName(tempRRead); - return true; - } - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = forward.getName(); - string tempRRead = reverse.getName().substr(0, reverse.getName().length()-1); - if (tempFRead == tempRRead) { - reverse.setName(tempRRead); - return true; + bool match = false; + + if (poundMatch) { + match = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + forward.setName(forward.getName().substr(0, poundMatchPos)); + reverse.setName(reverse.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = forward.getName(); + string reverseName = reverse.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + forward.setName(forwardName); + reverse.setName(reverseName); + }else{ + match = false; } } - } + }else if (perfectMatch) { match = perfectMatch; } - return false; + return match; } catch(exception& e) { m->errorOut(e, "MakeContigsCommand", "ckeckName"); diff --git a/source/commands/makecontigscommand.h b/source/commands/makecontigscommand.h index e967eea6..dc6add4c 100644 --- a/source/commands/makecontigscommand.h +++ b/source/commands/makecontigscommand.h @@ -59,12 +59,16 @@ class MakeContigsCommand : public Command { void help() { m->mothurOut(getHelpString()); } private: - char delim; - bool abort, allFiles, trimOverlap, createFileGroup, createOligosGroup, makeCount, noneOk, reorient, gz, renameSeq; + +#define perfectMatch 2 +#define poundMatch 1 + + char delim; + bool abort, allFiles, trimOverlap, createFileGroup, createOligosGroup, makeCount, noneOk, reorient, gz, renameSeq, nameType; string outputDir, ffastqfile, rfastqfile, align, oligosfile, rfastafile, ffastafile, rqualfile, fqualfile, findexfile, rindexfile, file, format, inputDir; string outFastaFile, outQualFile, outScrapFastaFile, outScrapQualFile, outMisMatchFile, outputGroupFileName, group; float match, misMatch, gapOpen, gapExtend; - int processors, longestBase, insert, tdiffs, bdiffs, pdiffs, ldiffs, sdiffs, deltaq, kmerSize, numBarcodes, numFPrimers, numLinkers, numSpacers, numRPrimers; + int processors, longestBase, insert, tdiffs, bdiffs, pdiffs, ldiffs, sdiffs, deltaq, kmerSize, numBarcodes, numFPrimers, numLinkers, numSpacers, numRPrimers, poundMatchPos; vector outputNames; Oligos* oligos; @@ -73,6 +77,8 @@ class MakeContigsCommand : public Command { map file2Group; vector qual_score; + bool setNameType(string, string); + bool setNameType(string, string, char); bool checkName(FastqRead& forward, FastqRead& reverse); bool checkName(Sequence& forward, Sequence& reverse); bool checkName(QualityScores& forward, QualityScores& reverse); From 1d5f573f1dce177611e0fb22fd75785996734cf3 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 14 Mar 2016 14:29:04 -0400 Subject: [PATCH 115/135] Adds namecheck changes to windows code #167 --- source/commands/makecontigscommand.cpp | 78 +- source/commands/makecontigscommand.h | 1226 +++++++++++++++++++++----------- 2 files changed, 842 insertions(+), 462 deletions(-) diff --git a/source/commands/makecontigscommand.cpp b/source/commands/makecontigscommand.cpp index 631a26dc..05cbb3dd 100644 --- a/source/commands/makecontigscommand.cpp +++ b/source/commands/makecontigscommand.cpp @@ -1170,7 +1170,7 @@ unsigned long long MakeContigsCommand::createProcessesGroups(vector< vector fileInputs } int spot = (h)*2; - contigsData* tempcontig = new contigsData(format, delim, group, fileInputs, qualOrIndexFiles, (outputFasta + extension), (outputScrapFasta + extension), (outputQual + extension), (outputScrapQual + extension), (outputMisMatches + extension), align, m, match, misMatch, gapOpen, gapExtend, insert, deltaq, tempFASTAFileNames, tempQUALFileNames, oligosfile, reorient, pdiffs, bdiffs, tdiffs, kmerSize, createOligosGroup, createFileGroup, allFiles, trimOverlap, lines[spot].start, lines[spot].end, lines[spot+1].start, lines[spot+1].end, qLines[spot].start, qLines[spot].end, qLines[spot+1].start, qLines[spot+1].end, h); + contigsData* tempcontig = new contigsData(format, delim, group, fileInputs, qualOrIndexFiles, (outputFasta + extension), (outputScrapFasta + extension), (outputQual + extension), (outputScrapQual + extension), (outputMisMatches + extension), align, m, match, misMatch, gapOpen, gapExtend, insert, deltaq, tempFASTAFileNames, tempQUALFileNames, oligosfile, reorient, pdiffs, bdiffs, tdiffs, kmerSize, createOligosGroup, createFileGroup, allFiles, trimOverlap, lines[spot].start, lines[spot].end, lines[spot+1].start, lines[spot+1].end, qLines[spot].start, qLines[spot].end, qLines[spot+1].start, qLines[spot+1].end, poundMatchPos, nameType, h); pDataArray.push_back(tempcontig); hThreadArray[h] = CreateThread(NULL, 0, MyContigsThreadFunction, pDataArray[h], 0, &dwThreadIdArray[h]); @@ -2494,9 +2494,9 @@ bool MakeContigsCommand::read(Sequence& fSeq, Sequence& rSeq, QualityScores*& fQ } /**************************************************************************************************/ -bool MakeContigsCommand::setNameType(string forward, string reverse) { +int MakeContigsCommand::setNameType(string forward, string reverse) { try { - bool type = false; + int type = 0; if (forward == reverse) { type = perfectMatch; } else { @@ -2523,9 +2523,9 @@ bool MakeContigsCommand::setNameType(string forward, string reverse) { } /**************************************************************************************************/ -bool MakeContigsCommand::setNameType(string forwardFile, string reverseFile, char delim) { +int MakeContigsCommand::setNameType(string forwardFile, string reverseFile, char delim) { try { - bool type = false; bool error = false; + int type = 0; bool error = false; string forward = ""; string reverse = ""; ifstream inForward, inReverse; @@ -2536,22 +2536,33 @@ bool MakeContigsCommand::setNameType(string forwardFile, string reverseFile, cha m->openInputFile(forwardFile, inForward); m->openInputFile(reverseFile, inReverse); - FastqRead fread(inForward, error, format); - forward = fread.getName(); - - FastqRead rread(inReverse, error, format); - reverse = rread.getName(); - + if (delim == '>') { + Sequence fread(inForward); + forward = fread.getName(); + Sequence rread(inReverse); + reverse = rread.getName(); + }else { + FastqRead fread(inForward, error, format); + forward = fread.getName(); + FastqRead rread(inReverse, error, format); + reverse = rread.getName(); + } }else { //compressed files #ifdef USE_BOOST m->openInputFileBinary(forwardFile, inForward, inFF); m->openInputFileBinary(reverseFile, inForward, inRF); - FastqRead fread(inFF, error, format); - forward = fread.getName(); - - FastqRead rread(inRF, error, format); - reverse = rread.getName(); + if (delim == '>') { + Sequence fread(inFF); + forward = fread.getName(); + Sequence rread(inRF); + reverse = rread.getName(); + }else { + FastqRead fread(inFF, error, format); + forward = fread.getName(); + FastqRead rread(inRF, error, format); + reverse = rread.getName(); + } #endif } @@ -2574,8 +2585,8 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect vector qfileFilePos; vector temp; vector trimmedNamesFilePos; - - string ForwardName = ""; string ReverseName = ""; + + nameType = setNameType(fasta[0], fasta[1], delim); #if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix) //set file positions for fasta file @@ -2599,7 +2610,6 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect name = name.substr(1); m->checkName(name); } - ForwardName = name; firstSeqNames[name] = i; trimmedNames[name.substr(0, name.length()-1)]; in.close(); @@ -2634,7 +2644,6 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect unsigned long long pos = in2.tellg(); trimmedNamesFilePos.push_back(pos - input.length() - 1); trimmedNames.erase(itTrimmed); - ReverseName = name; } } } @@ -2645,8 +2654,6 @@ int MakeContigsCommand::setLines(vector fasta, vector qual, vect if ((firstSeqNames.size() != 0) && (trimmedNames.size() == 0)) { qfileFilePos = trimmedNamesFilePos; } - nameType = setNameType(ForwardName, ReverseName); - //get last file position of reverse fasta[1] FILE * pFile; unsigned long long size; @@ -3306,8 +3313,8 @@ bool MakeContigsCommand::checkName(FastqRead& forward, FastqRead& reverse){ try { bool match = false; - if (poundMatch) { - match = poundMatch; + if (nameType == poundMatch) { + match = true; //we know the location of the # matches in the forward and reverse if (poundMatchPos) { forward.setName(forward.getName().substr(0, poundMatchPos)); @@ -3329,7 +3336,7 @@ bool MakeContigsCommand::checkName(FastqRead& forward, FastqRead& reverse){ match = false; } } - }else if (perfectMatch) { match = perfectMatch; } + }else if (nameType == perfectMatch) { match = true; } return match; } @@ -3346,8 +3353,8 @@ bool MakeContigsCommand::checkName(Sequence& forward, Sequence& reverse){ try { bool match = false; - if (poundMatch) { - match = poundMatch; + if (nameType == poundMatch) { + match = true; //we know the location of the # matches in the forward and reverse if (poundMatchPos) { forward.setName(forward.getName().substr(0, poundMatchPos)); @@ -3369,10 +3376,9 @@ bool MakeContigsCommand::checkName(Sequence& forward, Sequence& reverse){ match = false; } } - }else if (perfectMatch) { match = perfectMatch; } + }else if (nameType == perfectMatch) { match = true; } return match; - return false; } catch(exception& e) { m->errorOut(e, "MakeContigsCommand", "ckeckName"); @@ -3387,8 +3393,8 @@ bool MakeContigsCommand::checkName(QualityScores& forward, QualityScores& revers try { bool match = false; - if (poundMatch) { - match = poundMatch; + if (nameType == poundMatch) { + match = true; //we know the location of the # matches in the forward and reverse if (poundMatchPos) { forward.setName(forward.getName().substr(0, poundMatchPos)); @@ -3410,7 +3416,7 @@ bool MakeContigsCommand::checkName(QualityScores& forward, QualityScores& revers match = false; } } - }else if (perfectMatch) { match = perfectMatch; } + }else if (nameType == perfectMatch) { match = true; } return match; @@ -3429,8 +3435,8 @@ bool MakeContigsCommand::checkName(Sequence& forward, QualityScores& reverse){ try { bool match = false; - if (poundMatch) { - match = poundMatch; + if (nameType == poundMatch) { + match = true; //we know the location of the # matches in the forward and reverse if (poundMatchPos) { forward.setName(forward.getName().substr(0, poundMatchPos)); @@ -3452,7 +3458,7 @@ bool MakeContigsCommand::checkName(Sequence& forward, QualityScores& reverse){ match = false; } } - }else if (perfectMatch) { match = perfectMatch; } + }else if (nameType == perfectMatch) { match = true; } return match; } diff --git a/source/commands/makecontigscommand.h b/source/commands/makecontigscommand.h index dc6add4c..b63f0040 100644 --- a/source/commands/makecontigscommand.h +++ b/source/commands/makecontigscommand.h @@ -64,11 +64,11 @@ class MakeContigsCommand : public Command { #define poundMatch 1 char delim; - bool abort, allFiles, trimOverlap, createFileGroup, createOligosGroup, makeCount, noneOk, reorient, gz, renameSeq, nameType; + bool abort, allFiles, trimOverlap, createFileGroup, createOligosGroup, makeCount, noneOk, reorient, gz, renameSeq; string outputDir, ffastqfile, rfastqfile, align, oligosfile, rfastafile, ffastafile, rqualfile, fqualfile, findexfile, rindexfile, file, format, inputDir; string outFastaFile, outQualFile, outScrapFastaFile, outScrapQualFile, outMisMatchFile, outputGroupFileName, group; float match, misMatch, gapOpen, gapExtend; - int processors, longestBase, insert, tdiffs, bdiffs, pdiffs, ldiffs, sdiffs, deltaq, kmerSize, numBarcodes, numFPrimers, numLinkers, numSpacers, numRPrimers, poundMatchPos; + int processors, longestBase, insert, tdiffs, bdiffs, pdiffs, ldiffs, sdiffs, deltaq, kmerSize, numBarcodes, numFPrimers, numLinkers, numSpacers, numRPrimers, poundMatchPos, nameType; vector outputNames; Oligos* oligos; @@ -77,8 +77,8 @@ class MakeContigsCommand : public Command { map file2Group; vector qual_score; - bool setNameType(string, string); - bool setNameType(string, string, char); + int setNameType(string, string); + int setNameType(string, string, char); bool checkName(FastqRead& forward, FastqRead& reverse); bool checkName(Sequence& forward, Sequence& reverse); bool checkName(QualityScores& forward, QualityScores& reverse); @@ -120,7 +120,7 @@ struct contigsData { vector > fastaFileNames, qualFileNames; MothurOut* m; float match, misMatch, gapOpen, gapExtend; - int count, insert, threadID, pdiffs, bdiffs, tdiffs, deltaq, kmerSize; + int count, insert, threadID, pdiffs, bdiffs, tdiffs, deltaq, kmerSize, poundMatchPosition, nameType; bool allFiles, createOligosGroup, createFileGroup, done, trimOverlap, reorient, gz, renameSeqs; map groupCounts; map groupMap; @@ -133,7 +133,7 @@ struct contigsData { contigsData(){} - contigsData(string form, char d, string g, vector f, vector qif, string of, string osf, string oq, string osq, string om, string al, MothurOut* mout, float ma, float misMa, float gapO, float gapE, int thr, int delt, vector > ffn, vector > qfn,string olig, bool ro, int pdf, int bdf, int tdf, int km, bool cg, bool cfg, bool all, bool to, unsigned long long lff, unsigned long long lff2, unsigned long long lrf, unsigned long long lrf2, unsigned long long qff, unsigned long long qff2, unsigned long long qrf, unsigned long long qrf2, int tid) { + contigsData(string form, char d, string g, vector f, vector qif, string of, string osf, string oq, string osq, string om, string al, MothurOut* mout, float ma, float misMa, float gapO, float gapE, int thr, int delt, vector > ffn, vector > qfn,string olig, bool ro, int pdf, int bdf, int tdf, int km, bool cg, bool cfg, bool all, bool to, unsigned long long lff, unsigned long long lff2, unsigned long long lrf, unsigned long long lrf2, unsigned long long qff, unsigned long long qff2, unsigned long long qrf, unsigned long long qrf2, int pmp, int nt, int tid) { inputFiles = f; qualOrIndexFiles = qif; outputFasta = of; @@ -172,8 +172,10 @@ struct contigsData { format = form; done=false; renameSeqs = false; + poundMatchPosition = pmp; + nameType = nt; } - contigsData(string form, char d, string g, string al, string opd, MothurOut* mout, float ma, float misMa, float gapO, float gapE, int thr, int delt, string olig, bool ro, int pdf, int bdf, int tdf, int km, bool cg, bool cfg, bool all, bool to, int tid, vector< vector > fileI, int st, int ed, string compGroupFile, string compFastaFile, string compScrapFastaFile, string compQualFile, string compScrapQualFile, string compMisMatchFile, map tGroupCounts, map fGroup, bool gzb, bool ren) { + contigsData(string form, char d, string g, string al, string opd, MothurOut* mout, float ma, float misMa, float gapO, float gapE, int thr, int delt, string olig, bool ro, int pdf, int bdf, int tdf, int km, bool cg, bool cfg, bool all, bool to, int tid, vector< vector > fileI, int st, int ed, string compGroupFile, string compFastaFile, string compScrapFastaFile, string compQualFile, string compScrapQualFile, string compMisMatchFile, map tGroupCounts, map fGroup, bool gzb, int pmp, int nt, bool ren) { m = mout; match = ma; misMatch = misMa; @@ -212,6 +214,8 @@ struct contigsData { file2Group = fGroup; gz = gzb; renameSeqs = ren; + poundMatchPosition = pmp; + nameType = nt; } }; /**************************************************************************************************/ @@ -243,6 +247,59 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ string rindexfile = pDataArray->fileInputs[l][3]; pDataArray->group = pDataArray->file2Group[l]; + //find read name type to speed read matching later + //nameType = setNameType(ffastqfile, rfastqfile, delim); + //////////////////////////////////////////////////////// + int type = false; bool error = false; + string forward = ""; string reverse = ""; + + ifstream inForward, inReverse; +#ifdef USE_BOOST + boost::iostreams::filtering_istream inFF, inRF; +#endif + if (!gz) { //plain text files + m->openInputFile(forwardFile, inForward); + m->openInputFile(reverseFile, inReverse); + + FastqRead fread(inForward, error, format); + forward = fread.getName(); + + FastqRead rread(inReverse, error, format); + reverse = rread.getName(); + + }else { //compressed files +#ifdef USE_BOOST + m->openInputFileBinary(forwardFile, inForward, inFF); + m->openInputFileBinary(reverseFile, inForward, inRF); + + FastqRead fread(inFF, error, format); + forward = fread.getName(); + + FastqRead rread(inRF, error, format); + reverse = rread.getName(); +#endif + } + + if (forward == reverse) { type = perfectMatch; } + else { + int pos = forward.find_last_of('#'); + string tempForward = forward; + if (pos != string::npos) { tempForward = forward.substr(0, pos); } + + int pos2 = reverse.find_last_of('#'); + string tempReverse = reverse; + if (pos2 != string::npos) { tempReverse = reverse.substr(0, pos2); } + + if (pos2 == pos) { poundMatchPos = pos; } + else { poundMatchPos = 0; } + + if (tempForward == tempReverse) { type = poundMatch; } + } + + nameType = type; + //////////////////////////////////////////////////////// + + pDataArray->groupCounts.clear(); pDataArray->groupMap.clear(); @@ -499,6 +556,8 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ qual_score[0] = -2; qual_score[1] = -1.58147; qual_score[2] = -0.996843; qual_score[3] = -0.695524; qual_score[4] = -0.507676; qual_score[5] = -0.38013; qual_score[6] = -0.289268; qual_score[7] = -0.222552; qual_score[8] = -0.172557; qual_score[9] = -0.134552; qual_score[10] = -0.105361; qual_score[11] = -0.0827653; qual_score[12] = -0.0651742; qual_score[13] = -0.0514183; qual_score[14] = -0.0406248; qual_score[15] = -0.0321336; qual_score[16] = -0.0254397; qual_score[17] = -0.0201544; qual_score[18] = -0.0159759; qual_score[19] = -0.0126692; qual_score[20] = -0.0100503; qual_score[21] = -0.007975; qual_score[22] = -0.00632956; qual_score[23] = -0.00502447; qual_score[24] = -0.00398902; qual_score[25] = -0.00316729; qual_score[26] = -0.00251505; qual_score[27] = -0.00199726; qual_score[28] = -0.00158615; qual_score[29] = -0.00125972; qual_score[30] = -0.0010005; qual_score[31] = -0.000794644; qual_score[32] = -0.000631156; qual_score[33] = -0.000501313; qual_score[34] = -0.000398186; qual_score[35] = -0.000316278; qual_score[36] = -0.00025122; qual_score[37] = -0.000199546; qual_score[38] = -0.000158502; qual_score[39] = -0.0001259; qual_score[40] = -0.000100005; qual_score[41] = -7.9436e-05; qual_score[42] = -6.30977e-05; qual_score[43] = -5.012e-05; qual_score[44] = -3.98115e-05; qual_score[45] = -3.16233e-05; qual_score[46] = -2.51192e-05; int longestBase = 1000; + int poundMatchPos = p->poundMatchPosition; + Alignment* alignment; if(pDataArray->align == "gotoh") { alignment = new GotohOverlap(pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, longestBase); } else if(pDataArray->align == "needleman") { alignment = new NeedlemanOverlap(pDataArray->gapOpen, pDataArray->match, pDataArray->misMatch, longestBase); } @@ -622,62 +681,89 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fread.getName() == rread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = rread.getName().substr(0, rread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (rread.getName()[rread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - rread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead f2read(inFFasta, tignore, pDataArray->format); pDataArray->m->gobble(inFFasta); ///bool fixed = checkName(f2read, rread); ////////////////////////////////////////////////////////////// fixed = false; - if (f2read.getName() == rread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = f2read.getName().substr(0, f2read.getName().length()-1); - string tempRRead = rread.getName().substr(0, rread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((f2read.getName()[f2read.getName().length()-1] == '1') && (rread.getName()[rread.getName().length()-1] == '2')) { - f2read.setName(tempFRead); - rread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + f2read.setName(f2read.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = f2read.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + f2read.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { FastqRead r2read(inRFasta, ignore, pDataArray->format); pDataArray->m->gobble(inRFasta); ///bool fixed = checkName(fread, r2read); ////////////////////////////////////////////////////////////// fixed = false; - if (fread.getName() == r2read.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = r2read.getName().substr(0, r2read.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (r2read.getName()[r2read.getName().length()-1] == '2')) { - fread.setName(tempFRead); - r2read.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2read.setName(r2read.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2read.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2read.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, " + fread.getName() + ".\n"); ignore = true; } else { rread = r2read; } @@ -700,40 +786,59 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, firead); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fread.getName() == firead.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = firead.getName().substr(0, firead.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (firead.getName()[firead.getName().length()-1] == '2')) { - fread.setName(tempFRead); - firead.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + firead.setName(firead.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = firead.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + firead.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead f2iread(inFQualIndex, tignore, pDataArray->format); pDataArray->m->gobble(inFQualIndex); fixed = false; - if (fread.getName() == f2iread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = f2iread.getName().substr(0, f2iread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (f2iread.getName()[f2iread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - f2iread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + f2iread.setName(f2iread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = f2iread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + f2iread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward index file. Ignoring, " + fread.getName() + ".\n"); ignore = true; @@ -747,40 +852,59 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, riread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fread.getName() == riread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = riread.getName().substr(0, riread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (riread.getName()[riread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - riread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + riread.setName(riread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = riread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + riread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead r2iread(inRQualIndex, tignore, pDataArray->format); pDataArray->m->gobble(inRQualIndex); fixed = false; - if (fread.getName() == r2iread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = r2iread.getName().substr(0, r2iread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (r2iread.getName()[r2iread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - r2iread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2iread.setName(r2iread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2iread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2iread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in reverse index file. Ignoring, " + fread.getName() + ".\n"); ignore = true; @@ -794,20 +918,30 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (tfSeq.getName() == trSeq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tfSeq.getName().substr(0, tfSeq.getName().length()-1); - string tempRRead = trSeq.getName().substr(0, trSeq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tfSeq.getName()[tfSeq.getName().length()-1] == '1') && (trSeq.getName()[trSeq.getName().length()-1] == '2')) { - tfSeq.setName(tempFRead); - trSeq.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { @@ -815,40 +949,60 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(f2read, rread); ////////////////////////////////////////////////////////////// fixed = false; - if (tf2Seq.getName() == trSeq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tf2Seq.getName().substr(0, tf2Seq.getName().length()-1); - string tempRRead = trSeq.getName().substr(0, trSeq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tf2Seq.getName()[tf2Seq.getName().length()-1] == '1') && (trSeq.getName()[trSeq.getName().length()-1] == '2')) { - tf2Seq.setName(tempFRead); - trSeq.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + f2read.setName(f2read.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = f2read.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + f2read.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { Sequence tr2Seq(inRFasta); pDataArray->m->gobble(inRFasta); ///bool fixed = checkName(fread, r2read); ////////////////////////////////////////////////////////////// fixed = false; - if (tfSeq.getName() == tr2Seq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tfSeq.getName().substr(0, tfSeq.getName().length()-1); - string tempRRead = tr2Seq.getName().substr(0, tr2Seq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tfSeq.getName()[tfSeq.getName().length()-1] == '1') && (tr2Seq.getName()[tr2Seq.getName().length()-1] == '2')) { - tfSeq.setName(tempFRead); - tr2Seq.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2read.setName(r2read.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2read.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2read.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, " + tfSeq.getName() + ".\n"); ignore = true; } else { trSeq = tr2Seq; } @@ -868,20 +1022,30 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fQual->getName() == rQual->getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fQual->getName().substr(0, fQual->getName().length()-1); - string tempRRead = rQual->getName().substr(0, rQual->getName().length()-1); - if (tempFRead == tempRRead) { - if ((fQual->getName()[fQual->getName().length()-1] == '1') && (rQual->getName()[rQual->getName().length()-1] == '2')) { - fQual->setName(tempFRead); - rQual->setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { @@ -905,20 +1069,30 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fread.getName() == rread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = rread.getName().substr(0, rread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (rread.getName()[rread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - rread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { @@ -926,40 +1100,60 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(f2read, rread); ////////////////////////////////////////////////////////////// fixed = false; - if (f2read.getName() == rread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = f2read.getName().substr(0, f2read.getName().length()-1); - string tempRRead = rread.getName().substr(0, rread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((f2read.getName()[f2read.getName().length()-1] == '1') && (rread.getName()[rread.getName().length()-1] == '2')) { - f2read.setName(tempFRead); - rread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + f2read.setName(f2read.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = f2read.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + f2read.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { FastqRead r2read(inRF, ignore, pDataArray->format); ///bool fixed = checkName(fread, r2read); ////////////////////////////////////////////////////////////// fixed = false; - if (fread.getName() == r2read.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = r2read.getName().substr(0, r2read.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (r2read.getName()[r2read.getName().length()-1] == '2')) { - fread.setName(tempFRead); - r2read.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2read.setName(r2read.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2read.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2read.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, " + fread.getName() + ".\n"); ignore = true; } else { rread = r2read; } @@ -983,40 +1177,58 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, firead); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fread.getName() == firead.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = firead.getName().substr(0, firead.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (firead.getName()[firead.getName().length()-1] == '2')) { - fread.setName(tempFRead); - firead.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + firead.setName(firead.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = firead.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + firead.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead f2iread(inFQ, tignore, pDataArray->format); fixed = false; - if (fread.getName() == f2iread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = f2iread.getName().substr(0, f2iread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (f2iread.getName()[f2iread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - f2iread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + f2iread.setName(f2iread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = f2iread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + f2iread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward index file. Ignoring, " + fread.getName() + ".\n"); ignore = true; @@ -1030,39 +1242,58 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, riread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fread.getName() == riread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = riread.getName().substr(0, riread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (riread.getName()[riread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - riread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + riread.setName(riread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = riread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + riread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead r2iread(inRQ, tignore, pDataArray->format); fixed = false; - if (fread.getName() == r2iread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = r2iread.getName().substr(0, r2iread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (r2iread.getName()[r2iread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - r2iread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2iread.setName(r2iread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2iread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2iread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { @@ -1077,61 +1308,90 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (tfSeq.getName() == trSeq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tfSeq.getName().substr(0, tfSeq.getName().length()-1); - string tempRRead = trSeq.getName().substr(0, trSeq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tfSeq.getName()[tfSeq.getName().length()-1] == '1') && (trSeq.getName()[trSeq.getName().length()-1] == '2')) { - tfSeq.setName(tempFRead); - trSeq.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { Sequence tf2Seq(inFF); ///bool fixed = checkName(f2read, rread); ////////////////////////////////////////////////////////////// - fixed = false; - if (tf2Seq.getName() == trSeq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tf2Seq.getName().substr(0, tf2Seq.getName().length()-1); - string tempRRead = trSeq.getName().substr(0, trSeq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tf2Seq.getName()[tf2Seq.getName().length()-1] == '1') && (trSeq.getName()[trSeq.getName().length()-1] == '2')) { - tf2Seq.setName(tempFRead); - trSeq.setName(tempRRead); - fixed = true; + bool fixed = false; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + f2read.setName(f2read.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = f2read.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + f2read.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { Sequence tr2Seq(inRF); ///bool fixed = checkName(fread, r2read); ////////////////////////////////////////////////////////////// - fixed = false; - if (tfSeq.getName() == tr2Seq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tfSeq.getName().substr(0, tfSeq.getName().length()-1); - string tempRRead = tr2Seq.getName().substr(0, tr2Seq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tfSeq.getName()[tfSeq.getName().length()-1] == '1') && (tr2Seq.getName()[tr2Seq.getName().length()-1] == '2')) { - tfSeq.setName(tempFRead); - tr2Seq.setName(tempRRead); - fixed = true; + bool fixed = false; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2read.setName(r2read.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2read.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2read.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, " + tfSeq.getName() + ".\n"); ignore = true; } else { trSeq = tr2Seq; } @@ -1151,20 +1411,30 @@ static DWORD WINAPI MyGroupContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// bool fixed = false; - if (fQual->getName() == rQual->getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fQual->getName().substr(0, fQual->getName().length()-1); - string tempRRead = rQual->getName().substr(0, rQual->getName().length()-1); - if (tempFRead == tempRRead) { - if ((fQual->getName()[fQual->getName().length()-1] == '1') && (rQual->getName()[rQual->getName().length()-1] == '2')) { - fQual->setName(tempFRead); - rQual->setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { @@ -1923,6 +2193,8 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ */ int longestBase = 1000; + int poundMatchPos = p->poundMatchPosition; + Alignment* alignment; if(pDataArray->align == "gotoh") { alignment = new GotohOverlap(pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, longestBase); } else if(pDataArray->align == "needleman") { alignment = new NeedlemanOverlap(pDataArray->gapOpen, pDataArray->match, pDataArray->misMatch, longestBase); } @@ -2033,62 +2305,89 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// - bool fixed = false; - if (fread.getName() == rread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = rread.getName().substr(0, rread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (rread.getName()[rread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - rread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead f2read(inFFasta, tignore, pDataArray->format); pDataArray->m->gobble(inFFasta); ///bool fixed = checkName(f2read, rread); ////////////////////////////////////////////////////////////// fixed = false; - if (f2read.getName() == rread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = f2read.getName().substr(0, f2read.getName().length()-1); - string tempRRead = rread.getName().substr(0, rread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((f2read.getName()[f2read.getName().length()-1] == '1') && (rread.getName()[rread.getName().length()-1] == '2')) { - f2read.setName(tempFRead); - rread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + f2read.setName(f2read.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = f2read.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + f2read.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { FastqRead r2read(inRFasta, ignore, pDataArray->format); pDataArray->m->gobble(inRFasta); ///bool fixed = checkName(fread, r2read); ////////////////////////////////////////////////////////////// fixed = false; - if (fread.getName() == r2read.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = r2read.getName().substr(0, r2read.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (r2read.getName()[r2read.getName().length()-1] == '2')) { - fread.setName(tempFRead); - r2read.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2read.setName(r2read.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2read.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2read.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, " + fread.getName() + ".\n"); ignore = true; } else { rread = r2read; } @@ -2111,43 +2410,61 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ findexBarcode.setAligned(firead.getSeq()); ///bool fixed = checkName(fread, firead); ////////////////////////////////////////////////////////////// - bool fixed = false; - if (fread.getName() == firead.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = firead.getName().substr(0, firead.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (firead.getName()[firead.getName().length()-1] == '2')) { - fread.setName(tempFRead); - firead.setName(tempRRead); - fixed = true; + fixed = false; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + firead.setName(firead.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = firead.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + firead.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { FastqRead f2iread(inFQualIndex, tignore, pDataArray->format); pDataArray->m->gobble(inFQualIndex); if (tignore) { ignore=true; } ///bool fixed = checkName(fread, f2iread); ///////////////////////////////////////////////////////////// - fixed = false; - if (fread.getName() == f2iread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = f2iread.getName().substr(0, f2iread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (f2iread.getName()[f2iread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - f2iread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + f2iread.setName(f2iread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = f2iread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + f2iread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward index file. Ignoring, " + fread.getName() + ".\n"); ignore = true; @@ -2161,21 +2478,31 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ rindexBarcode.setAligned(riread.getSeq()); ///bool fixed = checkName(fread, riread); ////////////////////////////////////////////////////////////// - bool fixed = false; - if (fread.getName() == riread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = riread.getName().substr(0, riread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (riread.getName()[riread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - riread.setName(tempRRead); - fixed = true; + fixed = false; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + riread.setName(riread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = riread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + riread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { @@ -2183,21 +2510,30 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ ///bool fixed = checkName(fread, r2iread); ///////////////////////////////////////////////////////////// fixed = false; - if (fread.getName() == r2iread.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fread.getName().substr(0, fread.getName().length()-1); - string tempRRead = r2iread.getName().substr(0, r2iread.getName().length()-1); - if (tempFRead == tempRRead) { - if ((fread.getName()[fread.getName().length()-1] == '1') && (r2iread.getName()[r2iread.getName().length()-1] == '2')) { - fread.setName(tempFRead); - r2iread.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2iread.setName(r2iread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2iread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2iread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in reverse index file. Ignoring, " + fread.getName() + ".\n"); ignore = true; @@ -2211,62 +2547,91 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ Sequence trSeq(inRFasta); pDataArray->m->gobble(inRFasta); ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// - bool fixed = false; - if (tfSeq.getName() == trSeq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tfSeq.getName().substr(0, tfSeq.getName().length()-1); - string tempRRead = trSeq.getName().substr(0, trSeq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tfSeq.getName()[tfSeq.getName().length()-1] == '1') && (trSeq.getName()[trSeq.getName().length()-1] == '2')) { - tfSeq.setName(tempFRead); - trSeq.setName(tempRRead); - fixed = true; + fixed = false; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { Sequence tf2Seq(inFFasta); pDataArray->m->gobble(inFFasta); ///bool fixed = checkName(f2read, rread); ////////////////////////////////////////////////////////////// fixed = false; - if (tf2Seq.getName() == trSeq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tf2Seq.getName().substr(0, tf2Seq.getName().length()-1); - string tempRRead = trSeq.getName().substr(0, trSeq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tf2Seq.getName()[tf2Seq.getName().length()-1] == '1') && (trSeq.getName()[trSeq.getName().length()-1] == '2')) { - tf2Seq.setName(tempFRead); - trSeq.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + f2read.setName(f2read.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = f2read.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + f2read.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { Sequence tr2Seq(inRFasta); pDataArray->m->gobble(inRFasta); ///bool fixed = checkName(fread, r2read); ////////////////////////////////////////////////////////////// fixed = false; - if (tfSeq.getName() == tr2Seq.getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = tfSeq.getName().substr(0, tfSeq.getName().length()-1); - string tempRRead = tr2Seq.getName().substr(0, tr2Seq.getName().length()-1); - if (tempFRead == tempRRead) { - if ((tfSeq.getName()[tfSeq.getName().length()-1] == '1') && (tr2Seq.getName()[tr2Seq.getName().length()-1] == '2')) { - tfSeq.setName(tempFRead); - tr2Seq.setName(tempRRead); - fixed = true; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + r2read.setName(r2read.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = r2read.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + r2read.setName(reverseName); + }else{ + fixed = false; } } - } + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse fastq file. Ignoring, " + tfSeq.getName() + ".\n"); ignore = true; } else { trSeq = tr2Seq; } @@ -2285,22 +2650,31 @@ static DWORD WINAPI MyContigsThreadFunction(LPVOID lpParam){ if (fQual->getName() != rQual->getName()) { ///bool fixed = checkName(fread, rread); ////////////////////////////////////////////////////////////// - bool fixed = false; - if (fQual->getName() == rQual->getName()) { - fixed = true; - }else { - //if no match are the names only different by 1 and 2? - string tempFRead = fQual->getName().substr(0, fQual->getName().length()-1); - string tempRRead = rQual->getName().substr(0, rQual->getName().length()-1); - if (tempFRead == tempRRead) { - if ((fQual->getName()[fQual->getName().length()-1] == '1') && (rQual->getName()[rQual->getName().length()-1] == '2')) { - fQual->setName(tempFRead); - rQual->setName(tempRRead); - fixed = true; + fixed = false; + if (pDataArray->nameType == poundMatch) { + fixed = poundMatch; + //we know the location of the # matches in the forward and reverse + if (poundMatchPos) { + fread.setName(fread.getName().substr(0, poundMatchPos)); + rread.setName(rread.getName().substr(0, poundMatchPos)); + }else { //it does not match + string forwardName = fread.getName(); + string reverseName = rread.getName(); + + int pos = forwardName.find_last_of('#'); + if (pos != string::npos) { forwardName = forwardName.substr(0, pos); } + + int pos2 = reverseName.find_last_of('#'); + if (pos2 != string::npos) { reverseName = reverseName.substr(0, pos2); } + + if (forwardName == reverseName) { + fread.setName(forwardName); + rread.setName(reverseName); + }else{ + fixed = false; } } - } - + }else if (pDataArray->nameType == perfectMatch) { fixed = true; } ///////////////////////////////////////////////////////////// if (!fixed) { pDataArray->m->mothurOut("[WARNING]: name mismatch in forward and reverse qfile file. Ignoring, " + fQual->getName() + ".\n"); ignore = true; } From 58f79a236f05254565254e4616e15fa3615d8332 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 14 Mar 2016 15:26:39 -0400 Subject: [PATCH 116/135] Fixing Travis build --- Makefile-external => Makefile | 0 Mothur.xcodeproj/project.pbxproj | 8 ++++---- 2 files changed, 4 insertions(+), 4 deletions(-) rename Makefile-external => Makefile (100%) diff --git a/Makefile-external b/Makefile similarity index 100% rename from Makefile-external rename to Makefile diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index f6ee8158..81b32520 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -400,7 +400,7 @@ 83F25B0C163B031200ABE73D /* forest.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 83F25B0A163B031200ABE73D /* forest.cpp */; }; A70056E6156A93D000924A2D /* getotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056E5156A93D000924A2D /* getotulabelscommand.cpp */; }; A70056EB156AB6E500924A2D /* removeotulabelscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */; }; - A70332B712D3A13400761E33 /* Makefile-external in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* Makefile-external */; }; + A70332B712D3A13400761E33 /* Makefile in Sources */ = {isa = PBXBuildFile; fileRef = A70332B512D3A13400761E33 /* Makefile */; }; A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; }; A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7132EB2184E792700AAA402 /* communitytype.cpp */; }; A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; }; @@ -851,7 +851,7 @@ A70056E8156A93E300924A2D /* getotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getotulabelscommand.h; path = source/commands/getotulabelscommand.h; sourceTree = ""; }; A70056E9156AB6D400924A2D /* removeotulabelscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = removeotulabelscommand.h; path = source/commands/removeotulabelscommand.h; sourceTree = ""; }; A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = removeotulabelscommand.cpp; path = source/commands/removeotulabelscommand.cpp; sourceTree = ""; }; - A70332B512D3A13400761E33 /* Makefile-external */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = text; path = "Makefile-external"; sourceTree = ""; }; + A70332B512D3A13400761E33 /* Makefile */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.make; path = Makefile; sourceTree = ""; }; A7128B1A16B7001200723BE4 /* getdistscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getdistscommand.h; path = source/commands/getdistscommand.h; sourceTree = ""; }; A7128B1C16B7002600723BE4 /* getdistscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getdistscommand.cpp; path = source/commands/getdistscommand.cpp; sourceTree = ""; }; A7132EAE184E76EB00AAA402 /* communitytype.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; name = communitytype.h; path = source/communitytype/communitytype.h; sourceTree = ""; }; @@ -1583,7 +1583,7 @@ isa = PBXGroup; children = ( A7A61F1A130035C800E05B6B /* LICENSE.md */, - A70332B512D3A13400761E33 /* Makefile-external */, + A70332B512D3A13400761E33 /* Makefile */, 484F21691BA1C5F8001C1B5F /* makefile-internal */, 481623E31B58267D004C60B7 /* INSTALL.md */, 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */, @@ -3204,7 +3204,7 @@ A7E9B98D12D37EC400DA6239 /* weighted.cpp in Sources */, A7E9B98E12D37EC400DA6239 /* weightedlinkage.cpp in Sources */, A7E9B98F12D37EC400DA6239 /* whittaker.cpp in Sources */, - A70332B712D3A13400761E33 /* Makefile-external in Sources */, + A70332B712D3A13400761E33 /* Makefile in Sources */, A7FC480E12D788F20055BC5C /* linearalgebra.cpp in Sources */, A7FC486712D795D60055BC5C /* pcacommand.cpp in Sources */, A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */, From bc7ebac72195be7390de0d7075bdd476cd813964 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 15 Mar 2016 16:56:01 -0400 Subject: [PATCH 117/135] Adds output parameter to *tax.summary file #204 --- source/classifier/phylosummary.cpp | 197 +++++++++++++++++++++++--------- source/classifier/phylosummary.h | 6 +- source/commands/biominfocommand.cpp | 15 +-- source/commands/biominfocommand.h | 2 +- source/commands/classifyotucommand.cpp | 11 +- source/commands/classifyotucommand.h | 2 +- source/commands/classifyseqscommand.cpp | 12 +- source/commands/classifyseqscommand.h | 2 +- source/commands/summarytaxcommand.cpp | 8 +- source/commands/summarytaxcommand.h | 2 +- source/mothur.h | 1 - source/mothurout.cpp | 37 ++++++ source/mothurout.h | 4 +- 13 files changed, 218 insertions(+), 81 deletions(-) diff --git a/source/classifier/phylosummary.cpp b/source/classifier/phylosummary.cpp index 7f1f602e..53bc4553 100644 --- a/source/classifier/phylosummary.cpp +++ b/source/classifier/phylosummary.cpp @@ -395,13 +395,58 @@ void PhyloSummary::assignRank(int index){ } /**************************************************************************************************/ -void PhyloSummary::print(ofstream& out){ +string PhyloSummary::findTaxon(string rank){ + try { + vector pieces; vector indexes; + m->splitAtChar(rank, pieces, '.'); + for (int i = 0; i < pieces.size(); i++) { + int temp; + m->mothurConvert(pieces[i], temp); + indexes.push_back(temp); + } + string taxon = ""; + getTaxons(indexes, 1, 0, taxon); + + return taxon; + } + catch(exception& e) { + m->errorOut(e, "PhyloSummary", "findTaxon"); + exit(1); + } +} +/**************************************************************************************************/ + +string PhyloSummary::getTaxons(vector indexes, int index, int i, string& taxon){ + try { + int counter = 1; + + for(map::iterator it=tree[i].children.begin();it!=tree[i].children.end();it++){ + if (counter == indexes[index]) { + taxon += tree[it->second].name + ";"; + getTaxons(indexes, index+1, it->second, taxon); + } + counter++; + } + + return taxon; + } + catch(exception& e) { + m->errorOut(e, "PhyloSummary", "getNextTaxon"); + exit(1); + } +} + +/**************************************************************************************************/ + +void PhyloSummary::print(ofstream& out, string output){ try { if (ignore) { assignRank(0); } vector mGroups; - //print labels - out << "taxlevel\trankID\ttaxon\tdaughterlevels\ttotal"; + + //print labels + if (output == "detail") { out << "taxlevel\trankID\ttaxon\tdaughterlevels\ttotal"; } + else { out << "taxon\ttotal"; } if (groupmap != NULL) { //so the labels match the counts below, since the map sorts them automatically... //sort(groupmap->namesOfGroups.begin(), groupmap->namesOfGroups.end()); @@ -435,39 +480,60 @@ void PhyloSummary::print(ofstream& out){ } } - //print root - if (relabund) { - out.setf(ios::fixed, ios::floatfield); out.setf(ios::showpoint); - out << tree[0].level << "\t" << tree[0].rank << "\t" << tree[0].name << "\t" << totalChildrenInTree << "\t" << (tree[0].total/(double) tree[0].total); - - if (groupmap != NULL) { - for (int i = 0; i < mGroups.size(); i++) { - double thisNum = tree[0].groupCount[mGroups[i]]; - thisNum /= (double) groupmap->getNumSeqs(mGroups[i]); - out << '\t' << thisNum; + + + //print root + if (relabund) { + out.setf(ios::fixed, ios::floatfield); out.setf(ios::showpoint); + + if (output == "detail") { + out << tree[0].level << "\t" << tree[0].rank << "\t" << tree[0].name << "\t" << totalChildrenInTree << "\t" << (tree[0].total/(double) tree[0].total); + }else{ + //if (totalChildrenInTree == 0) { //leaf node - we want to print it. Use rank to find full taxonomy + //out << findTaxon(tree[0].rank) << '\t' << tree[0].total; + // } } - }else if ( ct != NULL) { - if (ct->hasGroupInfo()) { - for (int i = 0; i < mGroups.size(); i++) { - double thisNum = tree[0].groupCount[mGroups[i]]; - thisNum /= (double) ct->getGroupCount(mGroups[i]); - out << '\t' << thisNum; + + if ((output == "detail")) { + if (groupmap != NULL) { + for (int i = 0; i < mGroups.size(); i++) { + double thisNum = tree[0].groupCount[mGroups[i]]; + thisNum /= (double) groupmap->getNumSeqs(mGroups[i]); + out << '\t' << thisNum; + } + }else if ( ct != NULL) { + if (ct->hasGroupInfo()) { + for (int i = 0; i < mGroups.size(); i++) { + double thisNum = tree[0].groupCount[mGroups[i]]; + thisNum /= (double) ct->getGroupCount(mGroups[i]); + out << '\t' << thisNum; + } + } } + out << endl; + } + + }else { + if (output == "detail") { + out << tree[0].level << "\t" << tree[0].rank << "\t" << tree[0].name << "\t" << totalChildrenInTree << "\t" << tree[0].total; + }else{ + if (totalChildrenInTree == 0) { //leaf node - we want to print it. Use rank to find full taxonomy + out << findTaxon(tree[0].rank) << '\t' << tree[0].total; + } + } + if ((output == "detail")) { + if (groupmap != NULL) { + for (int i = 0; i < mGroups.size(); i++) { out << '\t'<< tree[0].groupCount[mGroups[i]]; } + }else if ( ct != NULL) { + if (ct->hasGroupInfo()) { for (int i = 0; i < mGroups.size(); i++) { out << '\t' << tree[0].groupCount[mGroups[i]]; } } + } + out << endl; } } - out << endl; - }else { - out << tree[0].level << "\t" << tree[0].rank << "\t" << tree[0].name << "\t" << totalChildrenInTree << "\t" << tree[0].total; - if (groupmap != NULL) { - for (int i = 0; i < mGroups.size(); i++) { out << '\t'<< tree[0].groupCount[mGroups[i]]; } - }else if ( ct != NULL) { - if (ct->hasGroupInfo()) { for (int i = 0; i < mGroups.size(); i++) { out << '\t' << tree[0].groupCount[mGroups[i]]; } } - } - out << endl; - } - + + //print rest - print(0, out); + print(0, out, output); } catch(exception& e) { @@ -500,27 +566,22 @@ void PhyloSummary::print(ofstream& out, bool relabund){ } } } - - //print root - out << tree[0].name << "\t" << "1.0000"; //root relative abundance is 1, everyone classifies to root - - /* - if (groupmap != NULL) { - for (int i = 0; i < mGroups.size(); i++) { out << tree[0].groupCount[mGroups[i]] << '\t'; } - }else if ( ct != NULL) { - if (ct->hasGroupInfo()) { for (int i = 0; i < mGroups.size(); i++) { out << tree[0].groupCount[mGroups[i]] << '\t'; } } - }*/ + + //print root + out << tree[0].name << "\t" << "1.0000"; //root relative abundance is 1, everyone classifies to root if (groupmap != NULL) { vector mGroups = groupmap->getNamesOfGroups(); - for (int i = 0; i < mGroups.size(); i++) { out << '\t' << "1.0000"; } + for (int i = 0; i < mGroups.size(); i++) { out << '\t' << "1.0000"; } }else if ( ct != NULL) { vector mGroups = ct->getNamesOfGroups(); if (ct->hasGroupInfo()) { for (int i = 0; i < mGroups.size(); i++) { out << '\t' << "1.0000"; } } } - out << endl; - + out << endl; + + + //print rest print(0, out, relabund); @@ -532,7 +593,7 @@ void PhyloSummary::print(ofstream& out, bool relabund){ } /**************************************************************************************************/ -void PhyloSummary::print(int i, ofstream& out){ +void PhyloSummary::print(int i, ofstream& out, string output){ try { map::iterator it; for(it=tree[i].children.begin();it!=tree[i].children.end();it++){ @@ -546,41 +607,65 @@ void PhyloSummary::print(int i, ofstream& out){ if (tree[it2->second].total != 0) { totalChildrenInTree++; } } - if (relabund) { - out << tree[it->second].level << "\t" << tree[it->second].rank << "\t" << tree[it->second].name << "\t" << totalChildrenInTree << "\t" << (tree[it->second].total/(double) tree[0].total); + if (output == "detail") { + if (relabund) { + out << tree[it->second].level << "\t" << tree[it->second].rank << "\t" << tree[it->second].name << "\t" << totalChildrenInTree << "\t" << (tree[it->second].total/(double) tree[0].total); + }else { + out << tree[it->second].level << "\t" << tree[it->second].rank << "\t" << tree[it->second].name << "\t" << totalChildrenInTree << "\t" << tree[it->second].total; + } }else { - out << tree[it->second].level << "\t" << tree[it->second].rank << "\t" << tree[it->second].name << "\t" << totalChildrenInTree << "\t" << tree[it->second].total; - } + if (totalChildrenInTree == 0) { //leaf node - we want to print it. Use rank to find full taxonomy + out << findTaxon(tree[it->second].rank) << '\t' << tree[it->second].total; + } + } + if (relabund) { map::iterator itGroup; if (groupmap != NULL) { vector mGroups = groupmap->getNamesOfGroups(); - for (int i = 0; i < mGroups.size(); i++) { out << '\t' << (tree[it->second].groupCount[mGroups[i]]/(double)groupmap->getNumSeqs(mGroups[i])); } + for (int i = 0; i < mGroups.size(); i++) { + if ((output == "detail") || (totalChildrenInTree == 0)) { + out << '\t' << (tree[it->second].groupCount[mGroups[i]]/(double)groupmap->getNumSeqs(mGroups[i])); + } + } }else if (ct != NULL) { if (ct->hasGroupInfo()) { vector mGroups = ct->getNamesOfGroups(); - for (int i = 0; i < mGroups.size(); i++) { out << '\t' << (tree[it->second].groupCount[mGroups[i]]/(double)ct->getGroupCount(mGroups[i])); } + for (int i = 0; i < mGroups.size(); i++) { + if ((output == "detail") || (totalChildrenInTree == 0)) { + out << '\t' << (tree[it->second].groupCount[mGroups[i]]/(double)ct->getGroupCount(mGroups[i])); + } + } } } }else { map::iterator itGroup; if (groupmap != NULL) { vector mGroups = groupmap->getNamesOfGroups(); - for (int i = 0; i < mGroups.size(); i++) { out << '\t' << tree[it->second].groupCount[mGroups[i]]; } + for (int i = 0; i < mGroups.size(); i++) { + if ((output == "detail") || (totalChildrenInTree == 0)) { + out << '\t' << tree[it->second].groupCount[mGroups[i]]; + } + } }else if (ct != NULL) { if (ct->hasGroupInfo()) { vector mGroups = ct->getNamesOfGroups(); - for (int i = 0; i < mGroups.size(); i++) { out << '\t' << tree[it->second].groupCount[mGroups[i]]; } + for (int i = 0; i < mGroups.size(); i++) { + if ((output == "detail") || (totalChildrenInTree == 0)) { + out << '\t' << tree[it->second].groupCount[mGroups[i]]; + } + } } } - + } - out << endl; + if ((output == "detail") || (totalChildrenInTree == 0)) { out << endl; } + } - print(it->second, out); + print(it->second, out, output); } } catch(exception& e) { diff --git a/source/classifier/phylosummary.h b/source/classifier/phylosummary.h index 3018b313..2f9dc5a2 100644 --- a/source/classifier/phylosummary.h +++ b/source/classifier/phylosummary.h @@ -41,17 +41,19 @@ class PhyloSummary { int summarize(string); //pass it a taxonomy file and a group file and it makes the tree int addSeqToTree(string, string); int addSeqToTree(string, map); - void print(ofstream&); + void print(ofstream&, string); void print(ofstream&, bool); int getMaxLevel() { return maxLevel; } private: string getNextTaxon(string&); vector tree; - void print(int, ofstream&); + void print(int, ofstream&, string); void print(int, ofstream&, bool); void assignRank(int); + string getTaxons(vector indexes, int index, int i, string&); void readTreeStruct(ifstream&); + string findTaxon(string); GroupMap* groupmap; CountTable* ct; bool ignore, relabund; diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index d71c615a..f6afcd71 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -18,6 +18,7 @@ vector BiomInfoCommand::setParameters(){ CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); CommandParameter pbasis("basis", "Multiple", "otu-sequence", "otu", "", "", "","",false,false); parameters.push_back(pbasis); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); + CommandParameter poutput("output", "Multiple", "simple-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -39,6 +40,7 @@ string BiomInfoCommand::getHelpString(){ helpString += "The label parameter allows you to enter a distance label to be used in the shared file created from your biom file.\n"; helpString += "The relabund parameter allows you to indicate you want the tax.summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The basis parameter allows you indicate what you want the summary file to represent, options are otu and sequence. Default is otu.\n"; + helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; helpString += "For example consider the following basis=sequence could give Clostridiales 3 105, where 105 is the total number of sequences whose otu classified to Clostridiales.\n"; helpString += "Now for basis=otu could give Clostridiales 3 7, where 7 is the number of otus that classified to Clostridiales.\n"; helpString += "The biom.info command should be in the following format: biom.info(biom=test.biom, label=0.03).\n"; @@ -140,6 +142,9 @@ BiomInfoCommand::BiomInfoCommand(string option) { label = validParameter.validFile(parameters, "label", false); if (label == "not found") { label = "userLabel"; } + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } + if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } + string temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } relabund = m->isTrue(temp); @@ -393,7 +398,7 @@ int BiomInfoCommand::createFilesFromBiom() { //write tax.summary if (relabund) { taxaSum.print(outTaxSum, relabund); } - else { taxaSum.print(outTaxSum); } + else { taxaSum.print(outTaxSum, output); } outTaxSum.close(); } @@ -492,13 +497,9 @@ int BiomInfoCommand::createFilesFromBiom() { outputNames.push_back(taxSumFilename); outputTypes["taxsummary"].push_back(taxSumFilename); ofstream outTaxSum; m->openOutputFile(taxSumFilename, outTaxSum); - - - //write tax.summary - if (relabund) { taxaSum.print(outTaxSum, relabund); } - else { taxaSum.print(outTaxSum); } - + taxaSum.print(outTaxSum, output); outTaxSum.close(); + if (ct != NULL) { delete ct; } } diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h index a638373b..99a06080 100644 --- a/source/commands/biominfocommand.h +++ b/source/commands/biominfocommand.h @@ -49,7 +49,7 @@ class BiomInfoCommand : public Command { vector getNamesAndTaxonomies(string); vector outputNames; - string fileroot, outputDir, biomfile, label, basis; + string fileroot, outputDir, biomfile, label, basis, output; bool firsttime, abort, relabund; int maxLevel; diff --git a/source/commands/classifyotucommand.cpp b/source/commands/classifyotucommand.cpp index a041e8a2..7ceaa9f1 100644 --- a/source/commands/classifyotucommand.cpp +++ b/source/commands/classifyotucommand.cpp @@ -20,7 +20,8 @@ vector ClassifyOtuCommand::setParameters(){ CommandParameter preftaxonomy("reftaxonomy", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(preftaxonomy); CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "none","",false,false,true); parameters.push_back(pname); CommandParameter pcount("count", "InputTypes", "", "", "NameCount-CountGroup", "none", "none","",false,false,true); parameters.push_back(pcount); - CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "none", "none","",false,false,true); parameters.push_back(pgroup); + CommandParameter poutput("output", "Multiple", "plain-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); + CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "none", "none","",false,false,true); parameters.push_back(pgroup); CommandParameter ppersample("persample", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(ppersample); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pbasis("basis", "Multiple", "otu-sequence", "otu", "", "", "","",false,false); parameters.push_back(pbasis); @@ -57,6 +58,7 @@ string ClassifyOtuCommand::getHelpString(){ helpString += "The label parameter allows you to select what distance levels you would like a output files created for, and is separated by dashes.\n"; helpString += "The persample parameter allows you to find a consensus taxonomy for each group. Default=f\n"; helpString += "The default value for label is all labels in your inputfile.\n"; + helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; helpString += "The cutoff parameter allows you to specify a consensus confidence threshold for your otu taxonomy output. The default is 51, meaning 51%. Cutoff cannot be below 51.\n"; helpString += "The probs parameter shuts off the outputting of the consensus confidence results. The default is true, meaning you want the confidence to be shown.\n"; helpString += "The threshold parameter allows you to specify a cutoff for the taxonomy file that is being inputted. Once the classification falls below the threshold the mothur will refer to it as unclassified when calculating the concensus. This feature is similar to adjusting the cutoff in classify.seqs. Default=0.\n"; @@ -262,6 +264,9 @@ ClassifyOtuCommand::ClassifyOtuCommand(string option) { temp = validParameter.validFile(parameters, "persample", false); if (temp == "not found"){ temp = "f"; } persample = m->isTrue(temp); + + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } + if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } if ((groupfile == "") && (countfile == "")) { if (persample) { m->mothurOut("persample is only valid with a group file, or count file with group information. Setting persample=f.\n"); persample = false; } } @@ -708,7 +713,7 @@ int ClassifyOtuCommand::process(ListVector* processList) { out.close(); //print summary file - taxaSum->print(outSum); + taxaSum->print(outSum, output); outSum.close(); if (persample) { @@ -717,7 +722,7 @@ int ClassifyOtuCommand::process(ListVector* processList) { string outputSumFile = getOutputFileName("taxsummary", variables); m->openOutputFile(outputSumFile, outSums); outputNames.push_back(outputSumFile); outputTypes["taxsummary"].push_back(outputSumFile); - taxaSums[i]->print(outSums); + taxaSums[i]->print(outSums, output); outSums.close(); delete taxaSums[i]; } diff --git a/source/commands/classifyotucommand.h b/source/commands/classifyotucommand.h index ca8f9e37..e9d98d2c 100644 --- a/source/commands/classifyotucommand.h +++ b/source/commands/classifyotucommand.h @@ -40,7 +40,7 @@ class ClassifyOtuCommand : public Command { CountTable* ct; ListVector* list; InputData* input; - string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis, countfile; + string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis, countfile, output; bool abort, allLines, probs, persample; int cutoff, threshold; set labels; //holds labels to be used diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 0596d3df..9335a126 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -20,7 +20,7 @@ vector ClassifySeqsCommand::setParameters(){ CommandParameter pname("name", "InputTypes", "", "", "NameCount", "none", "none","",false,false,true); parameters.push_back(pname); CommandParameter pcount("count", "InputTypes", "", "", "NameCount-CountGroup", "none", "none","",false,false,true); parameters.push_back(pcount); CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "none", "none","",false,false,true); parameters.push_back(pgroup); - + CommandParameter poutput("output", "Multiple", "simple-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); CommandParameter psearch("search", "Multiple", "kmer-blast-suffix-distance-align", "kmer", "", "", "","",false,false); parameters.push_back(psearch); CommandParameter pksize("ksize", "Number", "", "8", "", "", "","",false,false); parameters.push_back(pksize); CommandParameter pmethod("method", "Multiple", "wang-knn-zap", "wang", "", "", "","",false,false); parameters.push_back(pmethod); @@ -73,7 +73,7 @@ string ClassifySeqsCommand::getHelpString(){ helpString += "The probs parameter shuts off the bootstrapping results for the wang and zap method. The default is true, meaning you want the bootstrapping to be shown.\n"; helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The iters parameter allows you to specify how many iterations to do when calculating the bootstrap confidence score for your taxonomy with the wang method. The default is 100.\n"; - //helpString += "The flip parameter allows you shut off mothur's The default is T.\n"; + helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; helpString += "The classify.seqs command should be in the following format: \n"; helpString += "classify.seqs(reference=yourTemplateFile, fasta=yourFastaFile, method=yourClassificationMethod, search=yourSearchmethod, ksize=yourKmerSize, taxonomy=yourTaxonomyFile, processors=yourProcessors) \n"; helpString += "Example classify.seqs(fasta=amazon.fasta, reference=core.filtered, method=knn, search=gotoh, ksize=8, processors=2)\n"; @@ -570,8 +570,10 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option) { temp = validParameter.validFile(parameters, "iters", false); if (temp == "not found") { temp = "100"; } m->mothurConvert(temp, iters); - - + + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } + if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } + if ((method == "wang") && (search != "kmer")) { m->mothurOut("The wang method requires the kmer search. " + search + " will be disregarded, and kmer will be used." ); m->mothurOutEndLine(); search = "kmer"; @@ -761,7 +763,7 @@ int ClassifySeqsCommand::execute(){ //print summary file ofstream outTaxTree; m->openOutputFile(taxSummary, outTaxTree); - taxaSum->print(outTaxTree); + taxaSum->print(outTaxTree, output); outTaxTree.close(); //output taxonomy with the unclassified bins added diff --git a/source/commands/classifyseqscommand.h b/source/commands/classifyseqscommand.h index 7b8c8e53..fccbfcf6 100644 --- a/source/commands/classifyseqscommand.h +++ b/source/commands/classifyseqscommand.h @@ -69,7 +69,7 @@ class ClassifySeqsCommand : public Command { Classify* classify; ReferenceDB* rdb; - string fastaFileName, templateFileName, countfile, distanceFileName, namefile, search, method, taxonomyFileName, outputDir, groupfile; + string fastaFileName, templateFileName, countfile, distanceFileName, namefile, search, method, taxonomyFileName, outputDir, groupfile, output; int processors, kmerSize, numWanted, cutoff, iters; float match, misMatch, gapOpen, gapExtend; bool abort, probs, save, flip, hasName, hasCount, writeShortcuts, relabund; diff --git a/source/commands/summarytaxcommand.cpp b/source/commands/summarytaxcommand.cpp index 9a4a4100..06b1c996 100644 --- a/source/commands/summarytaxcommand.cpp +++ b/source/commands/summarytaxcommand.cpp @@ -19,7 +19,7 @@ vector SummaryTaxCommand::setParameters(){ CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "none", "none","",false,false,true); parameters.push_back(pgroup); CommandParameter preftaxonomy("reftaxonomy", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(preftaxonomy); CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); - + CommandParameter poutput("output", "Multiple", "simple-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -43,6 +43,7 @@ string SummaryTaxCommand::getHelpString(){ helpString += "The group parameter allows you add a group file so you can have the summary totals broken up by group.\n"; helpString += "The count parameter allows you add a count file so you can have the summary totals broken up by group.\n"; helpString += "The reftaxonomy parameter allows you give the name of the reference taxonomy file used when you classified your sequences. It is not required, but providing it will keep the rankIDs in the summary file static.\n"; + helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The summary.tax command should be in the following format: \n"; helpString += "summary.tax(taxonomy=yourTaxonomyFile) \n"; @@ -201,6 +202,9 @@ SummaryTaxCommand::SummaryTaxCommand(string option) { string temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } relabund = m->isTrue(temp); + + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } + if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } if (countfile == "") { if (namefile == "") { @@ -289,7 +293,7 @@ int SummaryTaxCommand::execute(){ variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(taxfile)); string summaryFile = getOutputFileName("summary",variables); m->openOutputFile(summaryFile, outTaxTree); - taxaSum->print(outTaxTree); + taxaSum->print(outTaxTree, output); outTaxTree.close(); delete taxaSum; diff --git a/source/commands/summarytaxcommand.h b/source/commands/summarytaxcommand.h index 7716ad0c..16f1492e 100644 --- a/source/commands/summarytaxcommand.h +++ b/source/commands/summarytaxcommand.h @@ -35,7 +35,7 @@ class SummaryTaxCommand : public Command { private: bool abort, relabund; - string taxfile, outputDir, namefile, groupfile, refTaxonomy, countfile; + string taxfile, outputDir, namefile, groupfile, refTaxonomy, countfile, output; vector outputNames; map nameMap; }; diff --git a/source/mothur.h b/source/mothur.h index 63282359..a214facf 100644 --- a/source/mothur.h +++ b/source/mothur.h @@ -330,7 +330,6 @@ class BadConversion : public runtime_error { public: BadConversion(const string& s) : runtime_error(s){ } }; - //********************************************************************************************************************** template void convert(const string& s, T& x, bool failIfLeftoverChars = true){ diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 6298f401..fe2efeee 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -3370,6 +3370,43 @@ bool MothurOut::mothurConvert(string item, int& num){ } } /***********************************************************************/ +bool MothurOut::mothurConvert(char item, int& num){ + try { + bool error = false; + + if (isdigit(item)) { + string mystring; mothurConvert(item, mystring); + mothurConvert(mystring, num); + }else { + num = 0; + error = true; + mothurOut("[ERROR]: cannot convert " + toString(item) + " to an integer."); mothurOutEndLine(); + commandInputsConvertError = true; + } + + return error; + } + catch(exception& e) { + errorOut(e, "MothurOut", "mothurConvert-int"); + exit(1); + } +} +/***********************************************************************/ +bool MothurOut::mothurConvert(char item, string& output){ + try { + + stringstream ss; + ss << item; + ss >> output; + return true; + + } + catch(exception& e) { + errorOut(e, "MothurOut", "mothurConvert-char"); + exit(1); + } +} +/***********************************************************************/ bool MothurOut::mothurConvert(string item, intDist& num){ try { bool error = false; diff --git a/source/mothurout.h b/source/mothurout.h index c6c0a8b0..ea0fccff 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -141,11 +141,12 @@ class MothurOut { int readNames(string, vector&, map&); int mothurRemove(string); int printVsearchFile(vector&, string); //sorts and prints by abundance adding /ab=xxx/ + bool mothurConvert(char, int&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. bool mothurConvert(string, int&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. bool mothurConvert(string, intDist&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. bool mothurConvert(string, float&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. bool mothurConvert(string, double&); //use for converting user inputs. Sets commandInputsConvertError to true if error occurs. Engines check this. - + bool mothurConvert(char, string&); //searchs and checks bool checkReleaseVersion(ifstream&, string); @@ -162,6 +163,7 @@ class MothurOut { bool isContainingOnlyDigits(string); bool containsAlphas(string); bool isNumeric1(string); + bool isNumeric1(char); bool isInteger(string); bool isLabelEquivalent(string, string); string getSimpleLabel(string); From b1974cf2331ff1c1a45ce55a779e3cfe1e7cf8f9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 16 Mar 2016 12:51:41 -0400 Subject: [PATCH 118/135] Adds relabund parameter to classify.otu #101 --- source/classifier/phylosummary.cpp | 7 +++++-- source/commands/classifyotucommand.cpp | 15 ++++++++++----- source/commands/classifyotucommand.h | 2 +- 3 files changed, 16 insertions(+), 8 deletions(-) diff --git a/source/classifier/phylosummary.cpp b/source/classifier/phylosummary.cpp index 53bc4553..322f6243 100644 --- a/source/classifier/phylosummary.cpp +++ b/source/classifier/phylosummary.cpp @@ -615,11 +615,14 @@ void PhyloSummary::print(int i, ofstream& out, string output){ } }else { if (totalChildrenInTree == 0) { //leaf node - we want to print it. Use rank to find full taxonomy - out << findTaxon(tree[it->second].rank) << '\t' << tree[it->second].total; + if (relabund) { + out << findTaxon(tree[it->second].rank) << '\t' << tree[it->second].total/(double) tree[0].total; + }else { + out << findTaxon(tree[it->second].rank) << '\t' << tree[it->second].total; + } } } - if (relabund) { map::iterator itGroup; if (groupmap != NULL) { diff --git a/source/commands/classifyotucommand.cpp b/source/commands/classifyotucommand.cpp index 7ceaa9f1..bdcc57d6 100644 --- a/source/commands/classifyotucommand.cpp +++ b/source/commands/classifyotucommand.cpp @@ -22,6 +22,7 @@ vector ClassifyOtuCommand::setParameters(){ CommandParameter pcount("count", "InputTypes", "", "", "NameCount-CountGroup", "none", "none","",false,false,true); parameters.push_back(pcount); CommandParameter poutput("output", "Multiple", "plain-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "none", "none","",false,false,true); parameters.push_back(pgroup); + CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); CommandParameter ppersample("persample", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(ppersample); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pbasis("basis", "Multiple", "otu-sequence", "otu", "", "", "","",false,false); parameters.push_back(pbasis); @@ -45,7 +46,7 @@ vector ClassifyOtuCommand::setParameters(){ string ClassifyOtuCommand::getHelpString(){ try { string helpString = ""; - helpString += "The classify.otu command parameters are list, taxonomy, reftaxonomy, name, group, count, persample, cutoff, label, basis and probs. The taxonomy and list parameters are required unless you have a valid current file.\n"; + helpString += "The classify.otu command parameters are list, taxonomy, reftaxonomy, name, group, count, persample, cutoff, label, basis, relabund and probs. The taxonomy and list parameters are required unless you have a valid current file.\n"; helpString += "The reftaxonomy parameter allows you give the name of the reference taxonomy file used when you classified your sequences. Providing it will keep the rankIDs in the summary file static.\n"; helpString += "The name parameter allows you add a names file with your taxonomy file.\n"; helpString += "The group parameter allows you provide a group file to use in creating the summary file breakdown.\n"; @@ -57,6 +58,7 @@ string ClassifyOtuCommand::getHelpString(){ helpString += "6 is the number of otus containing sequences from groupA, 1 is the number of otus containing sequences from groupB, and 2 is the number of otus containing sequences from groupC.\n"; helpString += "The label parameter allows you to select what distance levels you would like a output files created for, and is separated by dashes.\n"; helpString += "The persample parameter allows you to find a consensus taxonomy for each group. Default=f\n"; + helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The default value for label is all labels in your inputfile.\n"; helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; helpString += "The cutoff parameter allows you to specify a consensus confidence threshold for your otu taxonomy output. The default is 51, meaning 51%. Cutoff cannot be below 51.\n"; @@ -265,6 +267,9 @@ ClassifyOtuCommand::ClassifyOtuCommand(string option) { temp = validParameter.validFile(parameters, "persample", false); if (temp == "not found"){ temp = "f"; } persample = m->isTrue(temp); + temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } + relabund = m->isTrue(temp); + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } @@ -563,11 +568,11 @@ int ClassifyOtuCommand::process(ListVector* processList) { PhyloSummary* taxaSum; if (countfile != "") { - if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct,false); } - else { taxaSum = new PhyloSummary(ct,false); } + if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct,relabund); } + else { taxaSum = new PhyloSummary(ct,relabund); } }else { - if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap,false); } - else { taxaSum = new PhyloSummary(groupMap,false); } + if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap, relabund); } + else { taxaSum = new PhyloSummary(groupMap,relabund); } } vector outs; diff --git a/source/commands/classifyotucommand.h b/source/commands/classifyotucommand.h index e9d98d2c..cddb5ecb 100644 --- a/source/commands/classifyotucommand.h +++ b/source/commands/classifyotucommand.h @@ -41,7 +41,7 @@ class ClassifyOtuCommand : public Command { ListVector* list; InputData* input; string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis, countfile, output; - bool abort, allLines, probs, persample; + bool abort, allLines, probs, persample, relabund; int cutoff, threshold; set labels; //holds labels to be used vector outputNames, groups; From 513f691b4209530efd060c5f762afbfaff3d085b Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 16 Mar 2016 14:29:32 -0400 Subject: [PATCH 119/135] Adds printlevel to classify.seqs, classify.otu, biom.info and summary.tax #158 --- source/classifier/phylosummary.cpp | 36 +++++++++++++++++++++------------ source/classifier/phylosummary.h | 10 ++++----- source/commands/biominfocommand.cpp | 9 +++++++-- source/commands/biominfocommand.h | 2 +- source/commands/classifyotucommand.cpp | 21 +++++++++++-------- source/commands/classifyotucommand.h | 2 +- source/commands/classifyseqscommand.cpp | 11 +++++++--- source/commands/classifyseqscommand.h | 2 +- source/commands/summarytaxcommand.cpp | 14 +++++++++---- source/commands/summarytaxcommand.h | 1 + 10 files changed, 70 insertions(+), 38 deletions(-) diff --git a/source/classifier/phylosummary.cpp b/source/classifier/phylosummary.cpp index 322f6243..628bd0f9 100644 --- a/source/classifier/phylosummary.cpp +++ b/source/classifier/phylosummary.cpp @@ -11,13 +11,14 @@ #include "referencedb.h" /**************************************************************************************************/ -PhyloSummary::PhyloSummary(string refTfile, CountTable* c, bool r){ +PhyloSummary::PhyloSummary(string refTfile, CountTable* c, bool r, int p){ try { m = MothurOut::getInstance(); maxLevel = 0; ignore = false; numSeqs = 0; relabund = r; + printlevel = p; ct = c; groupmap = NULL; @@ -45,13 +46,14 @@ PhyloSummary::PhyloSummary(string refTfile, CountTable* c, bool r){ /**************************************************************************************************/ -PhyloSummary::PhyloSummary(CountTable* c, bool r){ +PhyloSummary::PhyloSummary(CountTable* c, bool r, int p){ try { m = MothurOut::getInstance(); maxLevel = 0; ignore = true; numSeqs = 0; relabund = r; + printlevel = p; ct = c; groupmap = NULL; @@ -65,13 +67,14 @@ PhyloSummary::PhyloSummary(CountTable* c, bool r){ } } /**************************************************************************************************/ -PhyloSummary::PhyloSummary(string refTfile, GroupMap* g, bool r){ +PhyloSummary::PhyloSummary(string refTfile, GroupMap* g, bool r, int p){ try { m = MothurOut::getInstance(); maxLevel = 0; ignore = false; numSeqs = 0; relabund = r; + printlevel = p; groupmap = g; ct = NULL; @@ -99,13 +102,14 @@ PhyloSummary::PhyloSummary(string refTfile, GroupMap* g, bool r){ /**************************************************************************************************/ -PhyloSummary::PhyloSummary(GroupMap* g, bool r){ +PhyloSummary::PhyloSummary(GroupMap* g, bool r, int p){ try { m = MothurOut::getInstance(); maxLevel = 0; ignore = true; numSeqs = 0; relabund = r; + printlevel = p; groupmap = g; ct = NULL; @@ -288,6 +292,8 @@ int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){ } level++; + + if (level > maxLevel) { maxLevel = level; } if ((seqTaxonomy == "") && (level < maxLevel)) { //if you think you are done and you are not. for (int k = level; k < maxLevel; k++) { seqTaxonomy += "unclassified;"; } @@ -362,6 +368,8 @@ int PhyloSummary::addSeqToTree(string seqTaxonomy, map containsGro } level++; + + if (level > maxLevel) { maxLevel = level; } if ((seqTaxonomy == "") && (level < maxLevel)) { //if you think you are done and you are not. for (int k = level; k < maxLevel; k++) { seqTaxonomy += "unclassified;"; } @@ -447,6 +455,10 @@ void PhyloSummary::print(ofstream& out, string output){ //print labels if (output == "detail") { out << "taxlevel\trankID\ttaxon\tdaughterlevels\ttotal"; } else { out << "taxon\ttotal"; } + + if (printlevel == -1) { printlevel = maxLevel; } + else if (printlevel > maxLevel) { m->mothurOut("[WARNING]: Your printlevel is greater than your maxlevel, adjusting your printlevel to " + toString(maxLevel) + "\n"); printlevel = maxLevel; } + if (groupmap != NULL) { //so the labels match the counts below, since the map sorts them automatically... //sort(groupmap->namesOfGroups.begin(), groupmap->namesOfGroups.end()); @@ -607,14 +619,14 @@ void PhyloSummary::print(int i, ofstream& out, string output){ if (tree[it2->second].total != 0) { totalChildrenInTree++; } } - if (output == "detail") { + if ((output == "detail") && (printlevel >= tree[it->second].level)) { if (relabund) { out << tree[it->second].level << "\t" << tree[it->second].rank << "\t" << tree[it->second].name << "\t" << totalChildrenInTree << "\t" << (tree[it->second].total/(double) tree[0].total); }else { out << tree[it->second].level << "\t" << tree[it->second].rank << "\t" << tree[it->second].name << "\t" << totalChildrenInTree << "\t" << tree[it->second].total; } }else { - if (totalChildrenInTree == 0) { //leaf node - we want to print it. Use rank to find full taxonomy + if (printlevel == tree[it->second].level) { //leaf node - we want to print it. Use rank to find full taxonomy if (relabund) { out << findTaxon(tree[it->second].rank) << '\t' << tree[it->second].total/(double) tree[0].total; }else { @@ -628,7 +640,7 @@ void PhyloSummary::print(int i, ofstream& out, string output){ if (groupmap != NULL) { vector mGroups = groupmap->getNamesOfGroups(); for (int i = 0; i < mGroups.size(); i++) { - if ((output == "detail") || (totalChildrenInTree == 0)) { + if (((output == "detail") && (printlevel >= tree[it->second].level)) || (printlevel == tree[it->second].level)) { out << '\t' << (tree[it->second].groupCount[mGroups[i]]/(double)groupmap->getNumSeqs(mGroups[i])); } } @@ -636,7 +648,7 @@ void PhyloSummary::print(int i, ofstream& out, string output){ if (ct->hasGroupInfo()) { vector mGroups = ct->getNamesOfGroups(); for (int i = 0; i < mGroups.size(); i++) { - if ((output == "detail") || (totalChildrenInTree == 0)) { + if (((output == "detail") && (printlevel >= tree[it->second].level)) || (printlevel == tree[it->second].level)) { out << '\t' << (tree[it->second].groupCount[mGroups[i]]/(double)ct->getGroupCount(mGroups[i])); } } @@ -647,7 +659,7 @@ void PhyloSummary::print(int i, ofstream& out, string output){ if (groupmap != NULL) { vector mGroups = groupmap->getNamesOfGroups(); for (int i = 0; i < mGroups.size(); i++) { - if ((output == "detail") || (totalChildrenInTree == 0)) { + if (((output == "detail") && (printlevel >= tree[it->second].level)) || (printlevel == tree[it->second].level)) { out << '\t' << tree[it->second].groupCount[mGroups[i]]; } } @@ -655,7 +667,7 @@ void PhyloSummary::print(int i, ofstream& out, string output){ if (ct->hasGroupInfo()) { vector mGroups = ct->getNamesOfGroups(); for (int i = 0; i < mGroups.size(); i++) { - if ((output == "detail") || (totalChildrenInTree == 0)) { + if (((output == "detail") && (printlevel >= tree[it->second].level)) || (printlevel == tree[it->second].level)) { out << '\t' << tree[it->second].groupCount[mGroups[i]]; } } @@ -663,9 +675,7 @@ void PhyloSummary::print(int i, ofstream& out, string output){ } } - if ((output == "detail") || (totalChildrenInTree == 0)) { out << endl; } - - + if (((output == "detail") && (printlevel >= tree[it->second].level)) || (printlevel == tree[it->second].level)) { out << endl; } } print(it->second, out, output); diff --git a/source/classifier/phylosummary.h b/source/classifier/phylosummary.h index 2f9dc5a2..505cd695 100644 --- a/source/classifier/phylosummary.h +++ b/source/classifier/phylosummary.h @@ -32,10 +32,10 @@ struct rawTaxNode { class PhyloSummary { public: - PhyloSummary(GroupMap*, bool); - PhyloSummary(string, GroupMap*, bool); - PhyloSummary(CountTable*, bool); - PhyloSummary(string, CountTable*, bool); + PhyloSummary(GroupMap*, bool, int); + PhyloSummary(string, GroupMap*, bool, int); + PhyloSummary(CountTable*, bool, int); + PhyloSummary(string, CountTable*, bool, int); ~PhyloSummary() {} int summarize(string); //pass it a taxonomy file and a group file and it makes the tree @@ -58,7 +58,7 @@ class PhyloSummary { CountTable* ct; bool ignore, relabund; - int numNodes; + int numNodes, printlevel; int numSeqs; int maxLevel; MothurOut* m; diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index f6afcd71..3d63dddf 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -19,6 +19,7 @@ vector BiomInfoCommand::setParameters(){ CommandParameter pbasis("basis", "Multiple", "otu-sequence", "otu", "", "", "","",false,false); parameters.push_back(pbasis); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter poutput("output", "Multiple", "simple-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); + CommandParameter pprintlevel("printlevel", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pprintlevel); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -41,6 +42,7 @@ string BiomInfoCommand::getHelpString(){ helpString += "The relabund parameter allows you to indicate you want the tax.summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The basis parameter allows you indicate what you want the summary file to represent, options are otu and sequence. Default is otu.\n"; helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; + helpString += "The printlevel parameter allows you to specify taxlevel of your summary file to print to. Options are 1 to the maz level in the file. The default is -1, meaning max level. If you select a level greater than the level your sequences classify to, mothur will print to the level your max level. \n"; helpString += "For example consider the following basis=sequence could give Clostridiales 3 105, where 105 is the total number of sequences whose otu classified to Clostridiales.\n"; helpString += "Now for basis=otu could give Clostridiales 3 7, where 7 is the number of otus that classified to Clostridiales.\n"; helpString += "The biom.info command should be in the following format: biom.info(biom=test.biom, label=0.03).\n"; @@ -148,6 +150,9 @@ BiomInfoCommand::BiomInfoCommand(string option) { string temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } relabund = m->isTrue(temp); + temp = validParameter.validFile(parameters, "printlevel", false); if (temp == "not found"){ temp = "-1"; } + m->mothurConvert(temp, printlevel); + basis = validParameter.validFile(parameters, "basis", false); if (basis == "not found") { basis = "otu"; } @@ -375,7 +380,7 @@ int BiomInfoCommand::createFilesFromBiom() { m->openOutputFile(taxFilename, outTax); GroupMap* g = NULL; - PhyloSummary taxaSum(g, relabund); + PhyloSummary taxaSum(g, relabund, printlevel); for (int i = 0; i < results[1].size(); i++) { if (m->control_pressed) { break; } @@ -466,7 +471,7 @@ int BiomInfoCommand::createFilesFromBiom() { } } - PhyloSummary taxaSum(ct, relabund); + PhyloSummary taxaSum(ct, relabund, printlevel); for (int i = 0; i < lookup[0]->getNumBins(); i++) { if (m->control_pressed) { break; } diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h index 99a06080..651d0685 100644 --- a/source/commands/biominfocommand.h +++ b/source/commands/biominfocommand.h @@ -51,7 +51,7 @@ class BiomInfoCommand : public Command { vector outputNames; string fileroot, outputDir, biomfile, label, basis, output; bool firsttime, abort, relabund; - int maxLevel; + int maxLevel, printlevel; }; diff --git a/source/commands/classifyotucommand.cpp b/source/commands/classifyotucommand.cpp index bdcc57d6..c0c5a109 100644 --- a/source/commands/classifyotucommand.cpp +++ b/source/commands/classifyotucommand.cpp @@ -23,6 +23,7 @@ vector ClassifyOtuCommand::setParameters(){ CommandParameter poutput("output", "Multiple", "plain-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); CommandParameter pgroup("group", "InputTypes", "", "", "CountGroup", "none", "none","",false,false,true); parameters.push_back(pgroup); CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); + CommandParameter pprintlevel("printlevel", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pprintlevel); CommandParameter ppersample("persample", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(ppersample); CommandParameter plabel("label", "String", "", "", "", "", "","",false,false); parameters.push_back(plabel); CommandParameter pbasis("basis", "Multiple", "otu-sequence", "otu", "", "", "","",false,false); parameters.push_back(pbasis); @@ -61,6 +62,7 @@ string ClassifyOtuCommand::getHelpString(){ helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The default value for label is all labels in your inputfile.\n"; helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; + helpString += "The printlevel parameter allows you to specify taxlevel of your summary file to print to. Options are 1 to the maz level in the file. The default is -1, meaning max level. If you select a level greater than the level your sequences classify to, mothur will print to the level your max level. \n"; helpString += "The cutoff parameter allows you to specify a consensus confidence threshold for your otu taxonomy output. The default is 51, meaning 51%. Cutoff cannot be below 51.\n"; helpString += "The probs parameter shuts off the outputting of the consensus confidence results. The default is true, meaning you want the confidence to be shown.\n"; helpString += "The threshold parameter allows you to specify a cutoff for the taxonomy file that is being inputted. Once the classification falls below the threshold the mothur will refer to it as unclassified when calculating the concensus. This feature is similar to adjusting the cutoff in classify.seqs. Default=0.\n"; @@ -270,6 +272,9 @@ ClassifyOtuCommand::ClassifyOtuCommand(string option) { temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } relabund = m->isTrue(temp); + temp = validParameter.validFile(parameters, "printlevel", false); if (temp == "not found"){ temp = "-1"; } + m->mothurConvert(temp, printlevel); + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } @@ -568,11 +573,11 @@ int ClassifyOtuCommand::process(ListVector* processList) { PhyloSummary* taxaSum; if (countfile != "") { - if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct,relabund); } - else { taxaSum = new PhyloSummary(ct,relabund); } + if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct,relabund, printlevel); } + else { taxaSum = new PhyloSummary(ct,relabund, printlevel); } }else { - if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap, relabund); } - else { taxaSum = new PhyloSummary(groupMap,relabund); } + if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap, relabund, printlevel); } + else { taxaSum = new PhyloSummary(groupMap,relabund, printlevel); } } vector outs; @@ -591,11 +596,11 @@ int ClassifyOtuCommand::process(ListVector* processList) { PhyloSummary* taxaSumt; if (countfile != "") { - if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, ct, false); } - else { taxaSumt = new PhyloSummary(ct, false); } + if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, ct, relabund, printlevel); } + else { taxaSumt = new PhyloSummary(ct, relabund, printlevel); } }else { - if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, groupMap,false); } - else { taxaSumt = new PhyloSummary(groupMap,false); } + if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, groupMap,relabund, printlevel); } + else { taxaSumt = new PhyloSummary(groupMap,relabund, printlevel); } } taxaSums.push_back(taxaSumt); } diff --git a/source/commands/classifyotucommand.h b/source/commands/classifyotucommand.h index cddb5ecb..75e245c7 100644 --- a/source/commands/classifyotucommand.h +++ b/source/commands/classifyotucommand.h @@ -42,7 +42,7 @@ class ClassifyOtuCommand : public Command { InputData* input; string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis, countfile, output; bool abort, allLines, probs, persample, relabund; - int cutoff, threshold; + int cutoff, threshold, printlevel; set labels; //holds labels to be used vector outputNames, groups; map nameMap; diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 9335a126..72dde60c 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -26,6 +26,7 @@ vector ClassifySeqsCommand::setParameters(){ CommandParameter pmethod("method", "Multiple", "wang-knn-zap", "wang", "", "", "","",false,false); parameters.push_back(pmethod); CommandParameter pprocessors("processors", "Number", "", "1", "", "", "","",false,false,true); parameters.push_back(pprocessors); CommandParameter pmatch("match", "Number", "", "1.0", "", "", "","",false,false); parameters.push_back(pmatch); + CommandParameter pprintlevel("printlevel", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pprintlevel); CommandParameter pmismatch("mismatch", "Number", "", "-1.0", "", "", "","",false,false); parameters.push_back(pmismatch); CommandParameter pgapopen("gapopen", "Number", "", "-2.0", "", "", "","",false,false); parameters.push_back(pgapopen); CommandParameter pgapextend("gapextend", "Number", "", "-1.0", "", "", "","",false,false); parameters.push_back(pgapextend); @@ -74,6 +75,7 @@ string ClassifySeqsCommand::getHelpString(){ helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The iters parameter allows you to specify how many iterations to do when calculating the bootstrap confidence score for your taxonomy with the wang method. The default is 100.\n"; helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; + helpString += "The printlevel parameter allows you to specify taxlevel of your summary file to print to. Options are 1 to the maz level in the file. The default is -1, meaning max level. If you select a level greater than the level your sequences classify to, mothur will print to the level your max level. \n"; helpString += "The classify.seqs command should be in the following format: \n"; helpString += "classify.seqs(reference=yourTemplateFile, fasta=yourFastaFile, method=yourClassificationMethod, search=yourSearchmethod, ksize=yourKmerSize, taxonomy=yourTaxonomyFile, processors=yourProcessors) \n"; helpString += "Example classify.seqs(fasta=amazon.fasta, reference=core.filtered, method=knn, search=gotoh, ksize=8, processors=2)\n"; @@ -538,7 +540,10 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option) { m->mothurConvert(temp, kmerSize); temp = validParameter.validFile(parameters, "match", false); if (temp == "not found"){ temp = "1.0"; } - m->mothurConvert(temp, match); + m->mothurConvert(temp, match); + + temp = validParameter.validFile(parameters, "printlevel", false); if (temp == "not found"){ temp = "-1"; } + m->mothurConvert(temp, printlevel); temp = validParameter.validFile(parameters, "mismatch", false); if (temp == "not found"){ temp = "-1.0"; } m->mothurConvert(temp, misMatch); @@ -719,12 +724,12 @@ int ClassifySeqsCommand::execute(){ if (hasCount) { ct = new CountTable(); ct->readTable(countfileNames[s], true, false); - taxaSum = new PhyloSummary(taxonomyFileName, ct, relabund); + taxaSum = new PhyloSummary(taxonomyFileName, ct, relabund, printlevel); taxaSum->summarize(tempTaxonomyFile); }else { if (groupfile != "") { group = groupfileNames[s]; groupMap = new GroupMap(group); groupMap->readMap(); } - taxaSum = new PhyloSummary(taxonomyFileName, groupMap, relabund); + taxaSum = new PhyloSummary(taxonomyFileName, groupMap, relabund, printlevel); if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } diff --git a/source/commands/classifyseqscommand.h b/source/commands/classifyseqscommand.h index fccbfcf6..0161e90a 100644 --- a/source/commands/classifyseqscommand.h +++ b/source/commands/classifyseqscommand.h @@ -70,7 +70,7 @@ class ClassifySeqsCommand : public Command { ReferenceDB* rdb; string fastaFileName, templateFileName, countfile, distanceFileName, namefile, search, method, taxonomyFileName, outputDir, groupfile, output; - int processors, kmerSize, numWanted, cutoff, iters; + int processors, kmerSize, numWanted, cutoff, iters, printlevel; float match, misMatch, gapOpen, gapExtend; bool abort, probs, save, flip, hasName, hasCount, writeShortcuts, relabund; diff --git a/source/commands/summarytaxcommand.cpp b/source/commands/summarytaxcommand.cpp index 06b1c996..bcdca610 100644 --- a/source/commands/summarytaxcommand.cpp +++ b/source/commands/summarytaxcommand.cpp @@ -20,6 +20,7 @@ vector SummaryTaxCommand::setParameters(){ CommandParameter preftaxonomy("reftaxonomy", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(preftaxonomy); CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); CommandParameter poutput("output", "Multiple", "simple-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); + CommandParameter pprintlevel("printlevel", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pprintlevel); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -44,6 +45,7 @@ string SummaryTaxCommand::getHelpString(){ helpString += "The count parameter allows you add a count file so you can have the summary totals broken up by group.\n"; helpString += "The reftaxonomy parameter allows you give the name of the reference taxonomy file used when you classified your sequences. It is not required, but providing it will keep the rankIDs in the summary file static.\n"; helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; + helpString += "The printlevel parameter allows you to specify taxlevel of your summary file to print to. Options are 1 to the maz level in the file. The default is -1, meaning max level. If you select a level greater than the level your sequences classify to, mothur will print to the level your max level. \n"; helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; helpString += "The summary.tax command should be in the following format: \n"; helpString += "summary.tax(taxonomy=yourTaxonomyFile) \n"; @@ -203,6 +205,10 @@ SummaryTaxCommand::SummaryTaxCommand(string option) { string temp = validParameter.validFile(parameters, "relabund", false); if (temp == "not found"){ temp = "false"; } relabund = m->isTrue(temp); + temp = validParameter.validFile(parameters, "printlevel", false); if (temp == "not found"){ temp = "-1"; } + m->mothurConvert(temp, printlevel); + + output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } @@ -239,11 +245,11 @@ int SummaryTaxCommand::execute(){ PhyloSummary* taxaSum; if (countfile != "") { - if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct, relabund); } - else { taxaSum = new PhyloSummary(ct, relabund); } + if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct, relabund, printlevel); } + else { taxaSum = new PhyloSummary(ct, relabund, printlevel); } }else { - if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap, relabund); } - else { taxaSum = new PhyloSummary(groupMap, relabund); } + if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap, relabund, printlevel); } + else { taxaSum = new PhyloSummary(groupMap, relabund, printlevel); } } if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (ct != NULL) { delete ct; } delete taxaSum; return 0; } diff --git a/source/commands/summarytaxcommand.h b/source/commands/summarytaxcommand.h index 16f1492e..c6ba2eae 100644 --- a/source/commands/summarytaxcommand.h +++ b/source/commands/summarytaxcommand.h @@ -36,6 +36,7 @@ class SummaryTaxCommand : public Command { private: bool abort, relabund; string taxfile, outputDir, namefile, groupfile, refTaxonomy, countfile, output; + int printlevel; vector outputNames; map nameMap; }; From 22807b603f4b758462b3852b210304d07e0a077d Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 16 Mar 2016 15:16:12 -0400 Subject: [PATCH 120/135] Adds threshold parameter to summary.tax #31 --- source/commands/summarytaxcommand.cpp | 96 +++++++++++++++++++++++++++++++++-- source/commands/summarytaxcommand.h | 4 +- 2 files changed, 96 insertions(+), 4 deletions(-) diff --git a/source/commands/summarytaxcommand.cpp b/source/commands/summarytaxcommand.cpp index bcdca610..26cc60ba 100644 --- a/source/commands/summarytaxcommand.cpp +++ b/source/commands/summarytaxcommand.cpp @@ -20,6 +20,7 @@ vector SummaryTaxCommand::setParameters(){ CommandParameter preftaxonomy("reftaxonomy", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(preftaxonomy); CommandParameter prelabund("relabund", "Boolean", "", "F", "", "", "","",false,false); parameters.push_back(prelabund); CommandParameter poutput("output", "Multiple", "simple-detail", "detail", "", "", "","",false,false, true); parameters.push_back(poutput); + CommandParameter pthreshold("threshold", "Number", "", "0", "", "", "","",false,true); parameters.push_back(pthreshold); CommandParameter pprintlevel("printlevel", "Number", "", "-1", "", "", "","",false,false); parameters.push_back(pprintlevel); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); @@ -44,6 +45,7 @@ string SummaryTaxCommand::getHelpString(){ helpString += "The group parameter allows you add a group file so you can have the summary totals broken up by group.\n"; helpString += "The count parameter allows you add a count file so you can have the summary totals broken up by group.\n"; helpString += "The reftaxonomy parameter allows you give the name of the reference taxonomy file used when you classified your sequences. It is not required, but providing it will keep the rankIDs in the summary file static.\n"; + helpString += "The threshold parameter allows you to specify a cutoff for the taxonomy file that is being inputted. Once the classification falls below the threshold the mothur will refer to it as unclassified when calculating the concensus. This feature is similar to adjusting the cutoff in classify.seqs. Default=0.\n"; helpString += "The output parameter allows you to specify format of your summary file. Options are simple and detail. The default is detail.\n"; helpString += "The printlevel parameter allows you to specify taxlevel of your summary file to print to. Options are 1 to the maz level in the file. The default is -1, meaning max level. If you select a level greater than the level your sequences classify to, mothur will print to the level your max level. \n"; helpString += "The relabund parameter allows you to indicate you want the summary file values to be relative abundances rather than raw abundances. Default=F. \n"; @@ -212,6 +214,9 @@ SummaryTaxCommand::SummaryTaxCommand(string option) { output = validParameter.validFile(parameters, "output", false); if(output == "not found"){ output = "detail"; } if ((output != "simple") && (output != "detail")) { m->mothurOut(output + " is not a valid output form. Options are simple and detail. I will use detail."); m->mothurOutEndLine(); output = "detail"; } + temp = validParameter.validFile(parameters, "threshold", false); if (temp == "not found") { temp = "0"; } + m->mothurConvert(temp, threshold); + if (countfile == "") { if (namefile == "") { vector files; files.push_back(taxfile); @@ -255,8 +260,26 @@ int SummaryTaxCommand::execute(){ if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (ct != NULL) { delete ct; } delete taxaSum; return 0; } int numSeqs = 0; - if ((namefile == "") || (countfile != "")) { numSeqs = taxaSum->summarize(taxfile); } - else if (namefile != "") { + if ((threshold == 0) && ((namefile == "") || (countfile != ""))) { numSeqs = taxaSum->summarize(taxfile); } + else if (threshold != 0) { + ifstream in; + m->openInputFile(taxfile, in); + + string name, taxon; + while(!in.eof()){ + + if (m->control_pressed) { break; } + + in >> name >> taxon; m->gobble(in); + + if (threshold != 0) { taxon = processTaxMap(taxon); } + + //add sequence to summary, countfile info included from Phylosummary constructor + taxaSum->addSeqToTree(name, taxon); + } + in.close(); + } + else if ((threshold != 0) && (namefile != "")) { map > nameMap; map >::iterator itNames; m->readNames(namefile, nameMap); @@ -274,6 +297,8 @@ int SummaryTaxCommand::execute(){ if (m->control_pressed) { break; } in >> name >> taxon; m->gobble(in); + + if (threshold != 0) { taxon = processTaxMap(taxon); } itNames = nameMap.find(name); @@ -289,7 +314,7 @@ int SummaryTaxCommand::execute(){ } } in.close(); - }else { numSeqs = taxaSum->summarize(taxfile); } + }else if (threshold == 0) { numSeqs = taxaSum->summarize(taxfile); } if (m->control_pressed) { if (groupMap != NULL) { delete groupMap; } if (ct != NULL) { delete ct; } delete taxaSum; return 0; } @@ -321,6 +346,71 @@ int SummaryTaxCommand::execute(){ exit(1); } } +/**************************************************************************************************/ +string SummaryTaxCommand::processTaxMap(string tax) { + try{ + + string newTax = tax; + + vector taxons; + int taxLength = tax.length(); + string taxon = ""; + int spot = 0; + + for(int i=0;iisNumeric1(confidenceScore)) { //its a confidence + newtaxon = taxon.substr(0, openParen); //rip off confidence + confidence = taxon.substr((openParen+1), (closeParen-openParen-1)); + }else { //its part of the taxon + newtaxon = taxon; + confidence = "0"; + } + }else{ + newtaxon = taxon; + confidence = "-1"; + } + float con = 0; + convert(confidence, con); + + if (con == -1) { i += taxLength; } //not a confidence score, no confidence scores on this taxonomy + else if ( con < threshold) { spot = i; break; } //below threshold, set all to unclassified + else {} //acceptable, move on + taxons.push_back(taxon); + + taxon = ""; + } + else{ + taxon += tax[i]; + } + + } + + if (spot != 0) { + newTax = ""; + for (int i = 0; i < taxons.size(); i++) { newTax += taxons[i] + ";"; } + for (int i = spot; i < taxLength; i++) { + if(tax[i] == ';'){ newTax += "unclassified;"; } + m->removeConfidences(newTax); + } + }else { m->removeConfidences(tax); newTax = tax; } //leave tax alone + + return newTax; + } + catch(exception& e) { + m->errorOut(e, "SummaryTaxCommand", "processTaxMap"); + exit(1); + } +} /**************************************************************************************/ diff --git a/source/commands/summarytaxcommand.h b/source/commands/summarytaxcommand.h index c6ba2eae..b7b59a62 100644 --- a/source/commands/summarytaxcommand.h +++ b/source/commands/summarytaxcommand.h @@ -36,9 +36,11 @@ class SummaryTaxCommand : public Command { private: bool abort, relabund; string taxfile, outputDir, namefile, groupfile, refTaxonomy, countfile, output; - int printlevel; + int printlevel, threshold; vector outputNames; map nameMap; + + string processTaxMap(string); }; /**************************************************************************************************/ From 5615dc0a17374a79dd0694def4c5d43139412367 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 16 Mar 2016 17:15:37 -0400 Subject: [PATCH 121/135] Adds parent taxon to unclassifieds in classify.seqs #29 --- source/classifier/bayesian.cpp | 2 + source/classifier/classify.cpp | 9 ++- source/classifier/classify.h | 3 +- source/classifier/phylotree.cpp | 17 +++-- source/commands/classifyseqscommand.cpp | 125 +++++++++++++++----------------- 5 files changed, 79 insertions(+), 77 deletions(-) diff --git a/source/classifier/bayesian.cpp b/source/classifier/bayesian.cpp index 7e8b55e0..a0ece699 100644 --- a/source/classifier/bayesian.cpp +++ b/source/classifier/bayesian.cpp @@ -71,6 +71,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) { m->mothurOut("Reading template taxonomy... "); cout.flush(); phyloTree = new PhyloTree(phyloTreeTest, phyloTreeName); + maxLevel = phyloTree->getMaxLevel(); m->mothurOut("DONE."); m->mothurOutEndLine(); @@ -185,6 +186,7 @@ Classify(), kmerSize(ksize), confidenceThreshold(cutoff), iters(i) { delete phyloTree; phyloTree = new PhyloTree(phyloTreeTest, phyloTreeName); + maxLevel = phyloTree->getMaxLevel(); //save probabilities if (rdb->save) { rdb->wordGenusProb = wordGenusProb; rdb->WordPairDiffArr = WordPairDiffArr; } diff --git a/source/classifier/classify.cpp b/source/classifier/classify.cpp index 7c6cc50b..26c13df2 100644 --- a/source/classifier/classify.cpp +++ b/source/classifier/classify.cpp @@ -17,7 +17,8 @@ /**************************************************************************************************/ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch) { - try { + try { + maxLevel = 0; ReferenceDB* rdb = ReferenceDB::getInstance(); if (tfile == "saved") { tfile = rdb->getSavedTaxonomy(); } @@ -168,7 +169,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me } } /**************************************************************************************************/ -Classify::Classify() { m = MothurOut::getInstance(); database = NULL; phyloTree=NULL; flipped=false; } +Classify::Classify() { m = MothurOut::getInstance(); database = NULL; phyloTree=NULL; flipped=false; maxLevel = 0; } /**************************************************************************************************/ int Classify::readTaxonomy(string file) { @@ -199,9 +200,11 @@ int Classify::readTaxonomy(string file) { //taxonomy = tempTaxonomy; phyloTree->assignHeirarchyIDs(0); + + maxLevel = phyloTree->getMaxLevel(); phyloTree->setUp(file); - + m->mothurOut("DONE."); m->mothurOutEndLine(); cout.flush(); diff --git a/source/classifier/classify.h b/source/classifier/classify.h index 7b4c1022..dba69b95 100644 --- a/source/classifier/classify.h +++ b/source/classifier/classify.h @@ -31,6 +31,7 @@ class Classify { virtual bool getFlipped() { return flipped; } virtual void generateDatabaseAndNames(string, string, string, int, float, float, float, float); virtual void setDistName(string s) {} //for knn, so if distance method is selected with knn you can create the smallest distance file in the right place. + int getMaxLevel() { return maxLevel; } protected: @@ -42,7 +43,7 @@ class Classify { string taxFile, templateFile, simpleTax; vector names; - int threadID, numLevels, numTaxa; + int threadID, numLevels, numTaxa, maxLevel; bool flip, flipped, shortcuts; int readTaxonomy(string); diff --git a/source/classifier/phylotree.cpp b/source/classifier/phylotree.cpp index 7054d969..ac8980b3 100644 --- a/source/classifier/phylotree.cpp +++ b/source/classifier/phylotree.cpp @@ -43,6 +43,8 @@ PhyloTree::PhyloTree(ifstream& in, string filename){ tree.resize(numNodes); + in >> maxLevel; m->gobble(in); + for (int i = 0; i < tree.size(); i++) { in >> tree[i].name >> tree[i].level >> tree[i].parent; m->gobble(in); } @@ -59,9 +61,7 @@ PhyloTree::PhyloTree(ifstream& in, string filename){ uniqueTaxonomies.insert(gnode); totals.push_back(gsize); } - in.close(); - } catch(exception& e) { m->errorOut(e, "PhyloTree", "PhyloTree"); @@ -94,7 +94,7 @@ PhyloTree::PhyloTree(string tfile){ string unknownTax = "unknown;"; //added last taxon until you get desired level for (int i = 1; i < maxLevel; i++) { - unknownTax += "unclassfied;"; + unknownTax += "unknown_unclassfied;"; } addSeqToTree("unknown", unknownTax); @@ -226,8 +226,12 @@ int PhyloTree::addSeqToTree(string seqName, string seqTaxonomy){ } if (seqTaxonomy == "") { uniqueTaxonomies.insert(currentNode); } + } - + + //save maxLevel for binning the unclassified seqs + if (level > maxLevel) { maxLevel = level; } + return 0; } catch(exception& e) { @@ -284,7 +288,7 @@ void PhyloTree::assignHeirarchyIDs(int index){ try { map::iterator it; int counter = 1; - + for(it=tree[index].children.begin();it!=tree[index].children.end();it++){ if (m->debug) { m->mothurOut(toString(index) +'\t' + tree[it->second].name +'\n'); } @@ -477,6 +481,9 @@ void PhyloTree::printTreeNodes(string treefilename) { //print treenodes outTree << tree.size() << endl; + + outTree << maxLevel << endl; + for (int i = 0; i < tree.size(); i++) { outTree << tree[i].name << '\t' << tree[i].level << '\t' << tree[i].parent << endl; } diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 72dde60c..0c2e01fc 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -717,92 +717,78 @@ int ClassifySeqsCommand::execute(){ m->mothurOut(" Done."); m->mothurOutEndLine(); } + //output taxonomy with the unclassified bins added + ifstream inTax; + m->openInputFile(newTaxonomyFile, inTax); + + ofstream outTax; + string unclass = newTaxonomyFile + ".unclass.temp"; + m->openOutputFile(unclass, outTax); + + //get maxLevel from phylotree so you know how many 'unclassified's to add + int maxLevel = classify->getMaxLevel(); + + //read taxfile - this reading and rewriting is done to preserve the confidence scores. + string name, taxon; string group = ""; GroupMap* groupMap = NULL; CountTable* ct = NULL; PhyloSummary* taxaSum; + if (hasCount) { ct = new CountTable(); ct->readTable(countfileNames[s], true, false); - taxaSum = new PhyloSummary(taxonomyFileName, ct, relabund, printlevel); - taxaSum->summarize(tempTaxonomyFile); + taxaSum = new PhyloSummary(ct, relabund, printlevel); }else { if (groupfile != "") { group = groupfileNames[s]; groupMap = new GroupMap(group); groupMap->readMap(); } + taxaSum = new PhyloSummary(groupMap, relabund, printlevel); + } + + while (!inTax.eof()) { + if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } - taxaSum = new PhyloSummary(taxonomyFileName, groupMap, relabund, printlevel); + inTax >> name >> taxon; m->gobble(inTax); - if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } + string newTax = addUnclassifieds(taxon, maxLevel); - if (namefile == "") { taxaSum->summarize(tempTaxonomyFile); } - else { - ifstream in; - m->openInputFile(tempTaxonomyFile, in); - - //read in users taxonomy file and add sequences to tree - string name, taxon; + outTax << name << '\t' << newTax << endl; + + if (namefile != "") { + itNames = nameMap.find(name); - while(!in.eof()){ - if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } - - in >> name >> taxon; m->gobble(in); - - itNames = nameMap.find(name); - - if (itNames == nameMap.end()) { - m->mothurOut(name + " is not in your name file please correct."); m->mothurOutEndLine(); exit(1); - }else{ - for (int i = 0; i < itNames->second.size(); i++) { - taxaSum->addSeqToTree(itNames->second[i], taxon); //add it as many times as there are identical seqs - } - itNames->second.clear(); - nameMap.erase(itNames->first); + if (itNames == nameMap.end()) { + m->mothurOut(name + " is not in your name file please correct."); m->mothurOutEndLine(); exit(1); + }else{ + for (int i = 0; i < itNames->second.size(); i++) { + taxaSum->addSeqToTree(itNames->second[i], newTax); //add it as many times as there are identical seqs } + itNames->second.clear(); + nameMap.erase(itNames->first); } - in.close(); + }else { + taxaSum->addSeqToTree(name, newTax); } } - m->mothurRemove(tempTaxonomyFile); - - if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } - - //print summary file - ofstream outTaxTree; - m->openOutputFile(taxSummary, outTaxTree); - taxaSum->print(outTaxTree, output); - outTaxTree.close(); - - //output taxonomy with the unclassified bins added - ifstream inTax; - m->openInputFile(newTaxonomyFile, inTax); - - ofstream outTax; - string unclass = newTaxonomyFile + ".unclass.temp"; - m->openOutputFile(unclass, outTax); - - //get maxLevel from phylotree so you know how many 'unclassified's to add - int maxLevel = taxaSum->getMaxLevel(); - - //read taxfile - this reading and rewriting is done to preserve the confidence scores. - string name, taxon; - while (!inTax.eof()) { - if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } m->mothurRemove(unclass); delete classify; return 0; } - - inTax >> name >> taxon; m->gobble(inTax); - - string newTax = addUnclassifieds(taxon, maxLevel); - - outTax << name << '\t' << newTax << endl; - } - inTax.close(); - outTax.close(); - + inTax.close(); + outTax.close(); + + m->mothurRemove(newTaxonomyFile); + rename(unclass.c_str(), newTaxonomyFile.c_str()); + + if (m->control_pressed) { outputTypes.clear(); if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete classify; return 0; } + + //print summary file + ofstream outTaxTree; + m->openOutputFile(taxSummary, outTaxTree); + taxaSum->print(outTaxTree, output); + outTaxTree.close(); + if (ct != NULL) { delete ct; } if (groupMap != NULL) { delete groupMap; } delete taxaSum; - m->mothurRemove(newTaxonomyFile); - rename(unclass.c_str(), newTaxonomyFile.c_str()); - - m->mothurOutEndLine(); - m->mothurOut("It took " + toString(time(NULL) - start) + " secs to create the summary file for " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine(); + m->mothurRemove(tempTaxonomyFile); + + m->mothurOutEndLine(); + m->mothurOut("It took " + toString(time(NULL) - start) + " secs to create the summary file for " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine(); } delete classify; @@ -850,9 +836,12 @@ string ClassifySeqsCommand::addUnclassifieds(string tax, int maxlevel) { level++; } + m->removeConfidences(taxon); + string cTax = taxon.substr(0, taxon.length()-1) + "_unclassified;"; + //add "unclassified" until you reach maxLevel while (level < maxlevel) { - newTax += "unclassified;"; + newTax += cTax; level++; } From f44de7e11c61d6601141c55b525d465d25bcb228 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 17 Mar 2016 11:11:13 -0400 Subject: [PATCH 122/135] Adds parent taxon to unclassifieds. Classify.seqs, classify.otu, biom.info #29 --- source/commands/biominfocommand.cpp | 35 ++------------------- source/commands/biominfocommand.h | 1 - source/commands/classifyotucommand.cpp | 42 ++----------------------- source/commands/classifyotucommand.h | 1 - source/commands/classifyseqscommand.cpp | 35 +-------------------- source/commands/classifyseqscommand.h | 1 - source/mothurout.cpp | 56 ++++++++++++++++++++++++++++++--- source/mothurout.h | 3 +- 8 files changed, 59 insertions(+), 115 deletions(-) diff --git a/source/commands/biominfocommand.cpp b/source/commands/biominfocommand.cpp index 3d63dddf..c7fbe05b 100644 --- a/source/commands/biominfocommand.cpp +++ b/source/commands/biominfocommand.cpp @@ -385,7 +385,7 @@ int BiomInfoCommand::createFilesFromBiom() { for (int i = 0; i < results[1].size(); i++) { if (m->control_pressed) { break; } - string newTax = addUnclassifieds(results[1][i]); + string newTax = m->addUnclassifieds(results[1][i], maxLevel, false); outTax << results[0][i] << '\t' << newTax << endl; taxaSum.addSeqToTree(results[0][i], newTax); @@ -483,7 +483,7 @@ int BiomInfoCommand::createFilesFromBiom() { containsGroup[lookup[j]->getGroup()] = lookup[j]->getAbundance(i); } - string newTax = addUnclassifieds(conTaxonomy[i]); + string newTax = m->addUnclassifieds(conTaxonomy[i], maxLevel, false); outTax << otuNames[i] << '\t' << total << '\t' << newTax << endl; if (basis == "sequence") { @@ -520,37 +520,6 @@ int BiomInfoCommand::createFilesFromBiom() { exit(1); } } -/**************************************************************************************************/ -string BiomInfoCommand::addUnclassifieds(string tax) { - try{ - string newTax, taxon; - int level = 0; - - newTax = ""; - - //keep what you have counting the levels - while (tax.find_first_of(';') != -1) { - //get taxon - taxon = tax.substr(0,tax.find_first_of(';'))+';'; - tax = tax.substr(tax.find_first_of(';')+1, tax.length()); - newTax += taxon; - level++; - } - - //add "unclassified" until you reach maxLevel - while (level < maxLevel) { - newTax += "unclassified;"; - level++; - } - - return newTax; - } - catch(exception& e) { - m->errorOut(e, "BiomInfoCommand", "addUnclassifieds"); - exit(1); - } -} - //********************************************************************************************************************** vector BiomInfoCommand::readData(string matrixFormat, string line, string matrixElementType, vector& groupNames, int numOTUs) { try { diff --git a/source/commands/biominfocommand.h b/source/commands/biominfocommand.h index 651d0685..f624402c 100644 --- a/source/commands/biominfocommand.h +++ b/source/commands/biominfocommand.h @@ -42,7 +42,6 @@ class BiomInfoCommand : public Command { string getTag(string&); string getName(string); string getTaxonomy(string, string); - string addUnclassifieds(string tax); vector< vector > readRows(string, int&, bool&); int getDims(string, int&, int&); vector readData(string, string, string, vector&, int); diff --git a/source/commands/classifyotucommand.cpp b/source/commands/classifyotucommand.cpp index c0c5a109..cd08e3b0 100644 --- a/source/commands/classifyotucommand.cpp +++ b/source/commands/classifyotucommand.cpp @@ -524,29 +524,19 @@ vector ClassifyOtuCommand::findConsensusTaxonomy(vector names, i currentNode = bestChild; } - if (myLevel != phylo->getMaxLevel()) { - while (myLevel != phylo->getMaxLevel()) { - if (probs) { - conTax += "unclassified(100);"; - }else{ - conTax += "unclassified;"; - } - myLevel++; - } - } + if (myLevel != phylo->getMaxLevel()) { conTax = m->addUnclassifieds(conTax, phylo->getMaxLevel(), probs); } + if (conTax == "") { conTax = "no_consensus;"; } delete phylo; return allNames; - } catch(exception& e) { m->errorOut(e, "ClassifyOtuCommand", "findConsensusTaxonomy"); exit(1); } } - //********************************************************************************************************************** int ClassifyOtuCommand::process(ListVector* processList) { try{ @@ -749,34 +739,6 @@ int ClassifyOtuCommand::process(ListVector* processList) { } } /**************************************************************************************************/ -string ClassifyOtuCommand::addUnclassifieds(string tax, int maxlevel) { - try{ - string newTax, taxon; - int level = 0; - - //keep what you have counting the levels - while (tax.find_first_of(';') != -1) { - //get taxon - taxon = tax.substr(0,tax.find_first_of(';'))+';'; - tax = tax.substr(tax.find_first_of(';')+1, tax.length()); - newTax += taxon; - level++; - } - - //add "unclassified" until you reach maxLevel - while (level < maxlevel) { - newTax += "unclassified;"; - level++; - } - - return newTax; - } - catch(exception& e) { - m->errorOut(e, "ClassifyOtuCommand", "addUnclassifieds"); - exit(1); - } -} -/**************************************************************************************************/ int ClassifyOtuCommand::processTaxMap() { try{ diff --git a/source/commands/classifyotucommand.h b/source/commands/classifyotucommand.h index 75e245c7..5668a8a4 100644 --- a/source/commands/classifyotucommand.h +++ b/source/commands/classifyotucommand.h @@ -50,7 +50,6 @@ class ClassifyOtuCommand : public Command { int process(ListVector*); int processTaxMap(); - string addUnclassifieds(string, int); vector findConsensusTaxonomy(vector, int&, string&); // returns the name of the "representative" taxonomy of given bin diff --git a/source/commands/classifyseqscommand.cpp b/source/commands/classifyseqscommand.cpp index 0c2e01fc..7ec7582e 100644 --- a/source/commands/classifyseqscommand.cpp +++ b/source/commands/classifyseqscommand.cpp @@ -749,7 +749,7 @@ int ClassifySeqsCommand::execute(){ inTax >> name >> taxon; m->gobble(inTax); - string newTax = addUnclassifieds(taxon, maxLevel); + string newTax = m->addUnclassifieds(taxon, maxLevel, probs); outTax << name << '\t' << newTax << endl; @@ -820,39 +820,6 @@ int ClassifySeqsCommand::execute(){ exit(1); } } - -/**************************************************************************************************/ -string ClassifySeqsCommand::addUnclassifieds(string tax, int maxlevel) { - try{ - string newTax, taxon; - int level = 0; - - //keep what you have counting the levels - while (tax.find_first_of(';') != -1) { - //get taxon - taxon = tax.substr(0,tax.find_first_of(';'))+';'; - tax = tax.substr(tax.find_first_of(';')+1, tax.length()); - newTax += taxon; - level++; - } - - m->removeConfidences(taxon); - string cTax = taxon.substr(0, taxon.length()-1) + "_unclassified;"; - - //add "unclassified" until you reach maxLevel - while (level < maxlevel) { - newTax += cTax; - level++; - } - - return newTax; - } - catch(exception& e) { - m->errorOut(e, "ClassifySeqsCommand", "addUnclassifieds"); - exit(1); - } -} - /**************************************************************************************************/ int ClassifySeqsCommand::createProcesses(string taxFileName, string tempTaxFile, string accnos, string filename) { diff --git a/source/commands/classifyseqscommand.h b/source/commands/classifyseqscommand.h index 0161e90a..c390941d 100644 --- a/source/commands/classifyseqscommand.h +++ b/source/commands/classifyseqscommand.h @@ -76,7 +76,6 @@ class ClassifySeqsCommand : public Command { int driver(linePair*, string, string, string, string); int createProcesses(string, string, string, string); - string addUnclassifieds(string, int); }; /**************************************************************************************************/ diff --git a/source/mothurout.cpp b/source/mothurout.cpp index fe2efeee..5ff8ac73 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -3427,6 +3427,50 @@ bool MothurOut::mothurConvert(string item, intDist& num){ exit(1); } } +/**************************************************************************************************/ +string MothurOut::addUnclassifieds(string tax, int maxlevel, bool probs) { + try{ + string newTax, taxon; + int level = 0; + + vector taxons; splitAtChar(tax, taxons, ';'); taxons.pop_back(); + vector confidences; + + int index = 0; + int confidence = 0; + for (int i = 0; i < taxons.size(); i++) { + index = i; + string thisTax = taxons[i]+";"; + confidence = removeConfidences(thisTax); + confidences.push_back(confidence); + + if (thisTax == "unclassified;"){ index--; break; } + else{ newTax += taxons[i] + ";"; } + } + level = index+1; + + string thisTax = taxons[index]+";"; + + removeConfidences(thisTax); + taxon = thisTax.substr(0, thisTax.length()-1); + + string cTax = ""; + if (probs) { cTax = taxon + "_unclassified(" + toString(confidences[index]) + ");"; } + else { cTax = taxon + "_unclassified;"; } + + //add "unclassified" until you reach maxLevel + while (level < maxlevel) { + newTax += cTax; + level++; + } + + return newTax; + } + catch(exception& e) { + errorOut(e, "MothurOut", "addUnclassifieds"); + exit(1); + } +} /***********************************************************************/ bool MothurOut::isNumeric1(string stringToCheck){ @@ -4675,6 +4719,7 @@ int MothurOut::removeConfidences(string& tax) { string taxon; string newTax = ""; + string confidenceScore = "0"; while (tax.find_first_of(';') != -1) { @@ -4688,9 +4733,10 @@ int MothurOut::removeConfidences(string& tax) { //is it a number? int pos2 = taxon.find_last_of(')'); if (pos2 != -1) { - string confidenceScore = taxon.substr(pos+1, (pos2-(pos+1))); - if (isNumeric1(confidenceScore)) { - taxon = taxon.substr(0, pos); //rip off confidence + string temp = taxon.substr(pos+1, (pos2-(pos+1))); + if (isNumeric1(temp)) { + taxon = taxon.substr(0, pos); //rip off confidence + confidenceScore = temp; } } } @@ -4701,8 +4747,10 @@ int MothurOut::removeConfidences(string& tax) { } tax = newTax; + + int confidence = 0; mothurConvert(confidenceScore, confidence); - return 0; + return confidence; } catch(exception& e) { errorOut(e, "MothurOut", "removeConfidences"); diff --git a/source/mothurout.h b/source/mothurout.h index ea0fccff..160e1869 100644 --- a/source/mothurout.h +++ b/source/mothurout.h @@ -194,7 +194,8 @@ class MothurOut { bool isSubset(vector, vector); //bigSet, subset int checkName(string&); map > parseClasses(string); - + string addUnclassifieds(string tax, int maxlevel, bool probs); + //math operation int max(int, int); From 1bb5181e3a2001f3915ce549cdb035fc7832d955 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 17 Mar 2016 12:24:44 -0400 Subject: [PATCH 123/135] Adds count parameter to get.sharedseqs #133 --- source/commands/getsharedotucommand.cpp | 93 ++++++++++++++++++++++++++------- source/commands/getsharedotucommand.h | 6 ++- source/datastructures/counttable.cpp | 25 ++++++++- source/datastructures/counttable.h | 1 + 4 files changed, 102 insertions(+), 23 deletions(-) diff --git a/source/commands/getsharedotucommand.cpp b/source/commands/getsharedotucommand.cpp index ed4518c4..30963a73 100644 --- a/source/commands/getsharedotucommand.cpp +++ b/source/commands/getsharedotucommand.cpp @@ -14,7 +14,8 @@ vector GetSharedOTUCommand::setParameters(){ try { CommandParameter pfasta("fasta", "InputTypes", "", "", "sharedFasta", "none", "none","fasta",false,false); parameters.push_back(pfasta); - CommandParameter pgroup("group", "InputTypes", "", "", "none", "none", "groupList","",false,false,true); parameters.push_back(pgroup); + CommandParameter pgroup("group", "InputTypes", "", "", "none", "GroupCount", "groupList","",false,false,true); parameters.push_back(pgroup); + CommandParameter pcount("count", "InputTypes", "", "", "none", "GroupCount", "none","",false,false); parameters.push_back(pcount); CommandParameter plist("list", "InputTypes", "", "", "sharedList", "sharedList", "groupList","sharedseq",false,false,true); parameters.push_back(plist); CommandParameter pshared("shared", "InputTypes", "", "", "sharedList-sharedFasta", "sharedList", "none","sharedseq",false,false,true); parameters.push_back(pshared); CommandParameter poutput("output", "Multiple", "accnos-default", "default", "", "", "","",false,false); parameters.push_back(poutput); @@ -45,6 +46,7 @@ string GetSharedOTUCommand::getHelpString(){ helpString += "If you enter your groups under the sharedgroups parameter mothur will return the otus that contain sequences from those groups and may also contain sequences from other groups.\n"; helpString += "If you do not enter any groups then the get.sharedseqs command will return sequences that are unique to all groups in your group or shared file.\n"; helpString += "The fasta parameter allows you to input a fasta file and outputs a fasta file for each distance level containing only the sequences that are in OTUs shared by the groups specified. It can only be used with a list and group file not the shared file input.\n"; + helpString += "The count parameter allows you to provide a count file containing the group info for the list file.\n"; helpString += "The output parameter allows you to output the list of names without the group and bin number added. \n"; helpString += "With this option you can use the names file as an input in get.seqs and remove.seqs commands. To do this enter output=accnos. \n"; helpString += "The get.sharedseqs command outputs a .names file for each distance level containing a list of sequences in the OTUs shared by the groups specified.\n"; @@ -163,6 +165,14 @@ GetSharedOTUCommand::GetSharedOTUCommand(string option) { //if the user has not given a path then, add inputdir. else leave path alone. if (path == "") { parameters["group"] = inputDir + it->second; } } + + it = parameters.find("count"); + //user has given a template file + if(it != parameters.end()){ + path = m->hasPath(it->second); + //if the user has not given a path then, add inputdir. else leave path alone. + if (path == "") { parameters["count"] = inputDir + it->second; } + } } @@ -187,6 +197,14 @@ GetSharedOTUCommand::GetSharedOTUCommand(string option) { else if (fastafile == "not found") { fastafile = ""; } else { m->setFastaFile(fastafile); } + countfile = validParameter.validFile(parameters, "count", true); + if (countfile == "not open") { countfile = ""; abort = true; } + else if (countfile == "not found") { countfile = ""; } + else { + m->setCountTableFile(countfile); + CountTable temp; + if (!temp.testGroups(countfile)) { m->mothurOut("[ERROR]: Your count file does not have group info, aborting."); m->mothurOutEndLine(); abort=true; } + } if ((sharedfile == "") && (listfile == "")) { //look for currents //is there are current file available for either of these? @@ -206,12 +224,18 @@ GetSharedOTUCommand::GetSharedOTUCommand(string option) { } if (listfile != "") { - if (groupfile == ""){ - groupfile = m->getGroupFile(); - if (groupfile != "") { m->mothurOut("Using " + groupfile + " as input file for the group parameter."); m->mothurOutEndLine(); } - else { m->mothurOut("You need to provide a group file if you are going to use the list format."); m->mothurOutEndLine(); abort = true; - } - } + if ((groupfile == "") && (countfile == "")) { + groupfile = m->getGroupFile(); + if (groupfile != "") { m->mothurOut("Using " + groupfile + " as input file for the group parameter."); m->mothurOutEndLine(); } + else { + countfile = m->getCountTableFile(); + if (countfile != "") { m->mothurOut("Using " + countfile + " as input file for the count parameter."); m->mothurOutEndLine(); } + else { + m->mothurOut("You need to provide a groupfile or countfile if you are going to use the list format."); m->mothurOutEndLine(); + abort = true; + } + } + } } if ((sharedfile != "") && (fastafile != "")) { m->mothurOut("You cannot use the fasta file with the shared file."); m->mothurOutEndLine(); abort = true; } @@ -264,14 +288,23 @@ int GetSharedOTUCommand::execute(){ if ( sharedfile != "") { runShared(); } else { m->setGroups(Groups); - groupMap = new GroupMap(groupfile); - int error = groupMap->readMap(); - if (error == 1) { delete groupMap; return 0; } + if (groupfile != "") { + groupMap = new GroupMap(groupfile); + + int groupError = groupMap->readMap(); + if (groupError == 1) { delete groupMap; return 0; } + vector allGroups = groupMap->getNamesOfGroups(); + m->setAllGroups(allGroups); + }else{ + ct = new CountTable(); + ct->readTable(countfile, true, false); + } if (m->control_pressed) { delete groupMap; return 0; } if (Groups.size() == 0) { - Groups = groupMap->getNamesOfGroups(); + if (groupfile != "") { Groups = groupMap->getNamesOfGroups(); } + else { Groups = ct->getNamesOfGroups(); } //make string for outputfile name userGroups = "unique."; @@ -281,9 +314,14 @@ int GetSharedOTUCommand::execute(){ }else{ //sanity check for group names SharedUtil util; - vector namesOfGroups = groupMap->getNamesOfGroups(); + vector namesOfGroups; + if (groupfile != "") { namesOfGroups = groupMap->getNamesOfGroups(); } + else { namesOfGroups = ct->getNamesOfGroups(); } + util.setGroups(Groups, namesOfGroups); - groupMap->setNamesOfGroups(namesOfGroups); + + if (groupfile != "") { groupMap->setNamesOfGroups(namesOfGroups); } + else { ct->setNamesOfGroups(namesOfGroups); } } //put groups in map to find easier @@ -320,7 +358,7 @@ int GetSharedOTUCommand::execute(){ if (m->control_pressed) { if (lastlist != NULL) { delete lastlist; } for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } outputTypes.clear(); - delete groupMap; return 0; + if (groupfile != "") { delete groupMap; }else { delete ct; } return 0; } list = new ListVector(in); @@ -382,7 +420,7 @@ int GetSharedOTUCommand::execute(){ if (lastlist != NULL) { delete lastlist; } - if (m->control_pressed) { outputTypes.clear(); for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } delete groupMap; return 0; } + if (m->control_pressed) { outputTypes.clear(); for (int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); } if (groupfile != "") { delete groupMap; }else { delete ct; } return 0; } } //set fasta file as new current fastafile string current = ""; @@ -455,17 +493,32 @@ int GetSharedOTUCommand::process(ListVector* shared) { string name = binNames[j]; //find group - string seqGroup = groupMap->getGroup(name); + string seqGroup = "not found"; vector seqsGroups; + if (groupfile != "") { seqGroup = groupMap->getGroup(name); } + else { + seqsGroups = ct->getGroups(name); + seqGroup = m->getStringFromVector(seqsGroups, "-"); + } + if (output != "accnos") { namesOfSeqsInThisBin.push_back((name + "|" + seqGroup + "|" + binLabels[i])); }else { namesOfSeqsInThisBin.push_back(name); } if (seqGroup == "not found") { m->mothurOut(name + " is not in your groupfile. Please correct."); m->mothurOutEndLine(); exit(1); } - //is this seq in one of hte groups we care about - it = groupFinder.find(seqGroup); - if (it == groupFinder.end()) { uniqueOTU = false; } //you have a sequence from a group you don't want - else { atLeastOne[seqGroup]++; } + if (groupfile != "") { + //is this seq in one of hte groups we care about + it = groupFinder.find(seqGroup); + if (it == groupFinder.end()) { uniqueOTU = false; } //you have a sequence from a group you don't want + else { atLeastOne[seqGroup]++; } + }else { + for (int k = 0; k < seqsGroups.size(); k++) { + //is this seq in one of hte groups we care about + it = groupFinder.find(seqsGroups[k]); + if (it == groupFinder.end()) { uniqueOTU = false; } //you have a sequence from a group you don't want + else { atLeastOne[seqsGroups[k]]++; } + } + } } //make sure you have at least one seq from each group you want diff --git a/source/commands/getsharedotucommand.h b/source/commands/getsharedotucommand.h index f03b5ddc..cfc933ac 100644 --- a/source/commands/getsharedotucommand.h +++ b/source/commands/getsharedotucommand.h @@ -14,6 +14,7 @@ #include "listvector.hpp" #include "sequence.hpp" #include "groupmap.h" +#include "counttable.h" #include "sharedrabundvector.h" #include "inputdata.h" @@ -43,10 +44,11 @@ class GetSharedOTUCommand : public Command { private: ListVector* list; - GroupMap* groupMap; + GroupMap* groupMap; + CountTable* ct; set labels; - string fastafile, label, groups, listfile, groupfile, sharedfile, output, userGroups, outputDir, format; + string fastafile, label, groups, listfile, groupfile, sharedfile, output, userGroups, outputDir, format, countfile; bool abort, allLines, unique; vector Groups; map groupFinder; diff --git a/source/datastructures/counttable.cpp b/source/datastructures/counttable.cpp index 1273f1eb..4cd2aa34 100644 --- a/source/datastructures/counttable.cpp +++ b/source/datastructures/counttable.cpp @@ -91,11 +91,34 @@ bool CountTable::testGroups(string file) { return hasGroups; } catch(exception& e) { - m->errorOut(e, "CountTable", "readTable"); + m->errorOut(e, "CountTable", "testGroups"); exit(1); } } /************************************************************/ +bool CountTable::setNamesOfGroups(vector mygroups) { + try { + //remove groups from table not in new groups we are setting + for (int i = 0; i < groups.size(); i++) { + if (m->inUsersGroups(groups[i], mygroups)) {} + else { removeGroup(groups[i]); } + } + + //add any new groups in new groups list to table + for (int i = 0; i < mygroups.size(); i++) { + if (m->inUsersGroups(mygroups[i], groups)) {} + else { addGroup(mygroups[i]); } + } + + //false if error + return (!m->control_pressed); + } + catch(exception& e) { + m->errorOut(e, "CountTable", "setNamesOfGroups"); + exit(1); + } +} +/************************************************************/ int CountTable::createTable(string namefile, string groupfile, bool createGroup) { try { diff --git a/source/datastructures/counttable.h b/source/datastructures/counttable.h index 8daaa346..64def2e0 100644 --- a/source/datastructures/counttable.h +++ b/source/datastructures/counttable.h @@ -61,6 +61,7 @@ class CountTable { bool hasGroupInfo() { return hasGroups; } int getNumGroups() { return groups.size(); } vector getNamesOfGroups() { return groups; } //returns group names, if no group info vector is blank. + bool setNamesOfGroups(vector); int addGroup(string); int removeGroup(string); From d49eacd731da03dcc1734c298ba9e6a0120925d1 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Thu, 17 Mar 2016 13:23:29 -0400 Subject: [PATCH 124/135] Adds fastqread class to get.seqs #113 --- source/commands/getseqscommand.cpp | 29 +++++++++++++++-------------- source/commands/getseqscommand.h | 2 +- source/datastructures/fastqread.cpp | 18 ++++++++++++++++++ source/datastructures/fastqread.h | 5 ++++- 4 files changed, 38 insertions(+), 16 deletions(-) diff --git a/source/commands/getseqscommand.cpp b/source/commands/getseqscommand.cpp index 0e680f4a..fdda444a 100644 --- a/source/commands/getseqscommand.cpp +++ b/source/commands/getseqscommand.cpp @@ -11,6 +11,7 @@ #include "sequence.hpp" #include "listvector.hpp" #include "counttable.h" +#include "fastqread.h" //********************************************************************************************************************** vector GetSeqsCommand::setParameters(){ @@ -28,6 +29,7 @@ vector GetSeqsCommand::setParameters(){ CommandParameter pdups("dups", "Boolean", "", "T", "", "", "","",false,false); parameters.push_back(pdups); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); + CommandParameter pformat("format", "Multiple", "sanger-illumina-solexa-illumina1.8+", "illumina1.8+", "", "", "","",false,false,true); parameters.push_back(pformat); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); CommandParameter paccnos2("accnos2", "InputTypes", "", "", "none", "none", "none","",false,false); parameters.push_back(paccnos2); @@ -48,6 +50,7 @@ string GetSeqsCommand::getHelpString(){ helpString += "It outputs a file containing only the sequences in the .accnos file.\n"; helpString += "The get.seqs command parameters are accnos, fasta, name, group, list, taxonomy, qfile, alignreport, fastq and dups. You must provide accnos unless you have a valid current accnos file, and at least one of the other parameters.\n"; helpString += "The dups parameter allows you to add the entire line from a name file if you add any name from the line. default=true. \n"; + helpString += "The format parameter is used to indicate whether your sequences are sanger, solexa, illumina1.8+ or illumina, default=illumina1.8+.\n"; helpString += "The get.seqs command should be in the following format: get.seqs(accnos=yourAccnos, fasta=yourFasta).\n"; helpString += "Example get.seqs(accnos=amazon.accnos, fasta=amazon.fasta).\n"; helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n"; @@ -312,6 +315,13 @@ GetSeqsCommand::GetSeqsCommand(string option) { string usedDups = "true"; string temp = validParameter.validFile(parameters, "dups", false); if (temp == "not found") { temp = "true"; usedDups = ""; } dups = m->isTrue(temp); + + format = validParameter.validFile(parameters, "format", false); if (format == "not found"){ format = "illumina1.8+"; } + + if ((format != "sanger") && (format != "illumina") && (format != "illumina1.8+") && (format != "solexa")) { + m->mothurOut(format + " is not a valid format. Your format choices are sanger, solexa, illumina1.8+ and illumina, aborting." ); m->mothurOutEndLine(); + abort=true; + } if ((fastqfile == "") && (fastafile == "") && (namefile == "") && (groupfile == "") && (alignfile == "") && (listfile == "") && (taxfile == "") && (qualfile == "") && (accnosfile2 == "") && (countfile == "")) { m->mothurOut("You must provide one of the following: fasta, name, group, count, alignreport, taxonomy, quality, fastq or listfile."); m->mothurOutEndLine(); abort = true; } @@ -440,26 +450,17 @@ int GetSeqsCommand::readFastq(){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } //read sequence name - string input = m->getline(in); m->gobble(in); - - string outputString = input + "\n"; + bool ignore; + FastqRead fread(in, ignore, format); m->gobble(in); - if (input[0] == '@') { - //get rest of lines - outputString += m->getline(in) + "\n"; m->gobble(in); - outputString += m->getline(in) + "\n"; m->gobble(in); - outputString += m->getline(in) + "\n"; m->gobble(in); - - vector splits = m->splitWhiteSpace(input); - string name = splits[0]; - name = name.substr(1); - m->checkName(name); + if (!ignore) { + string name = fread.getName(); if (names.count(name) != 0) { if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet wroteSomething = true; selectedCount++; - out << outputString; + fread.printFastq(out); uniqueNames.insert(name); }else { m->mothurOut("[WARNING]: " + name + " is in your fastq file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); diff --git a/source/commands/getseqscommand.h b/source/commands/getseqscommand.h index 9895432b..d7962add 100644 --- a/source/commands/getseqscommand.h +++ b/source/commands/getseqscommand.h @@ -36,7 +36,7 @@ class GetSeqsCommand : public Command { private: set names; vector outputNames; - string accnosfile, accnosfile2, fastafile, fastqfile, namefile, countfile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir; + string accnosfile, accnosfile2, fastafile, fastqfile, namefile, countfile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir, format; bool abort, dups; map uniqueMap; //for debug diff --git a/source/datastructures/fastqread.cpp b/source/datastructures/fastqread.cpp index 846239ad..a852226a 100644 --- a/source/datastructures/fastqread.cpp +++ b/source/datastructures/fastqread.cpp @@ -79,6 +79,7 @@ FastqRead::FastqRead(ifstream& in, bool& ignore, string f) { if (name == "") { m->mothurOut("[WARNING]: Blank fasta name, ignoring read."); m->mothurOutEndLine(); ignore=true; } else if (name[0] != '@') { m->mothurOut("[WARNING]: reading " + name + " expected a name with @ as a leading character, ignoring read."); m->mothurOutEndLine(); ignore=true; } else { name = name.substr(1); } + if (pieces.size() > 1) { pieces.erase(pieces.begin()); comment = m->getStringFromVector(pieces, " "); } //read sequence sequence = m->getline(in); m->gobble(in); @@ -100,6 +101,7 @@ FastqRead::FastqRead(ifstream& in, bool& ignore, string f) { if (name2 != "") { if (name != name2) { m->mothurOut("[WARNING]: names do not match. read " + name + " for fasta and " + name2 + " for quality, ignoring."); ignore=true; } } if (quality.length() != sequence.length()) { m->mothurOut("[WARNING]: Lengths do not match for sequence " + name + ". Read " + toString(sequence.length()) + " characters for fasta and " + toString(quality.length()) + " characters for quality scores, ignoring read."); ignore=true; } + scoreString = quality; scores = convertQual(quality); m->checkName(name); @@ -132,6 +134,7 @@ FastqRead::FastqRead(boost::iostreams::filtering_istream& in, bool& ignore, stri if (name == "") { m->mothurOut("[WARNING]: Blank fasta name, ignoring read."); m->mothurOutEndLine(); ignore=true; } else if (name[0] != '@') { m->mothurOut("[WARNING]: reading " + name + " expected a name with @ as a leading character, ignoring read."); m->mothurOutEndLine(); ignore=true; } else { name = name.substr(1); } + if (pieces.size() > 1) { pieces.erase(pieces.begin()); comment = m->getStringFromVector(pieces, " "); } //read sequence std::getline(in, sequence); m->gobble(in); @@ -153,6 +156,7 @@ FastqRead::FastqRead(boost::iostreams::filtering_istream& in, bool& ignore, stri if (name2 != "") { if (name != name2) { m->mothurOut("[WARNING]: names do not match. read " + name + " for fasta and " + name2 + " for quality, ignoring."); ignore=true; } } if (quality.length() != sequence.length()) { m->mothurOut("[WARNING]: Lengths do not match for sequence " + name + ". Read " + toString(sequence.length()) + " characters for fasta and " + toString(quality.length()) + " characters for quality scores, ignoring read."); ignore=true; } + scoreString = quality; scores = convertQual(quality); m->checkName(name); @@ -211,6 +215,20 @@ Sequence FastqRead::getSequence() { } } //********************************************************************************************************************** +void FastqRead::printFastq(ostream& out) { + try { + out << "@" << name << " " << comment << endl; + out << sequence << endl; + out << "+" << endl; + out << scoreString << endl; + + } + catch(exception& e) { + m->errorOut(e, "FastqRead", "printFastq"); + exit(1); + } +} +//********************************************************************************************************************** QualityScores FastqRead::getQuality() { try { QualityScores temp(name, scores); diff --git a/source/datastructures/fastqread.h b/source/datastructures/fastqread.h index 5ab04cd2..7bae3d1a 100644 --- a/source/datastructures/fastqread.h +++ b/source/datastructures/fastqread.h @@ -40,16 +40,19 @@ class FastqRead { void setName(string n) { name = n; } string getSeq() { return sequence; } vector getScores() { return scores; } + void printFastq(ostream&); Sequence getSequence(); QualityScores getQuality(); + private: MothurOut* m; vector scores; - string name; + string name, comment; string sequence; + string scoreString; string format; vector convertTable; From d02fcf347fde37bf57c2117123a43f432c8a3910 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 22 Mar 2016 15:39:53 -0400 Subject: [PATCH 125/135] Adds fastq class to list.seqs #113 --- source/commands/listseqscommand.cpp | 48 ++++++++++++++++--------------------- source/commands/listseqscommand.h | 2 +- 2 files changed, 22 insertions(+), 28 deletions(-) diff --git a/source/commands/listseqscommand.cpp b/source/commands/listseqscommand.cpp index 0713ef7c..ac907051 100644 --- a/source/commands/listseqscommand.cpp +++ b/source/commands/listseqscommand.cpp @@ -11,7 +11,7 @@ #include "sequence.hpp" #include "listvector.hpp" #include "counttable.h" - +#include "fastqread.h" //********************************************************************************************************************** vector ListSeqsCommand::setParameters(){ @@ -24,6 +24,7 @@ vector ListSeqsCommand::setParameters(){ CommandParameter plist("list", "InputTypes", "", "", "FNGLT", "FNGLT", "none","accnos",false,false,true); parameters.push_back(plist); CommandParameter ptaxonomy("taxonomy", "InputTypes", "", "", "FNGLT", "FNGLT", "none","accnos",false,false,true); parameters.push_back(ptaxonomy); CommandParameter palignreport("alignreport", "InputTypes", "", "", "FNGLT", "FNGLT", "none","accnos",false,false); parameters.push_back(palignreport); + CommandParameter pformat("format", "Multiple", "sanger-illumina-solexa-illumina1.8+", "illumina1.8+", "", "", "","",false,false,true); parameters.push_back(pformat); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -43,6 +44,7 @@ string ListSeqsCommand::getHelpString(){ string helpString = ""; helpString += "The list.seqs command reads a fasta, name, group, count, list, taxonomy, fastq or alignreport file and outputs a .accnos file containing sequence names.\n"; helpString += "The list.seqs command parameters are fasta, name, group, count, list, taxonomy, fastq and alignreport. You must provide one of these parameters.\n"; + helpString += "The format parameter is used to indicate whether your sequences are sanger, solexa, illumina1.8+ or illumina, default=illumina1.8+.\n"; helpString += "The list.seqs command should be in the following format: list.seqs(fasta=yourFasta).\n"; helpString += "Example list.seqs(fasta=amazon.fasta).\n"; helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n"; @@ -221,10 +223,19 @@ ListSeqsCommand::ListSeqsCommand(string option) { else if (fastqfile == "not found") { fastqfile = ""; } if ((fastqfile == "") && (countfile == "") && (fastafile == "") && (namefile == "") && (listfile == "") && (groupfile == "") && (alignfile == "") && (taxfile == "")) { m->mothurOut("You must provide a file."); m->mothurOutEndLine(); abort = true; } - - int okay = 1; - if (outputDir != "") { okay++; } - if (inputDir != "") { okay++; } + + bool formatFound = true; + format = validParameter.validFile(parameters, "format", false); if (format == "not found"){ formatFound = false; format = "illumina1.8+"; } + + if ((format != "sanger") && (format != "illumina") && (format != "illumina1.8+") && (format != "solexa")) { + m->mothurOut(format + " is not a valid format. Your format choices are sanger, solexa, illumina1.8+ and illumina, aborting." ); m->mothurOutEndLine(); + abort=true; + } + + int okay = 1; + if (outputDir != "") { okay++; } + if (inputDir != "") { okay++; } + if (formatFound) { okay++; } if (parameters.size() > okay) { m->mothurOut("You may only enter one file."); m->mothurOutEndLine(); abort = true; } } @@ -308,36 +319,19 @@ int ListSeqsCommand::readFastq(){ m->openInputFile(fastqfile, in); string name; - //ofstream out; - //string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta"; - //m->openOutputFile(newFastaName, out); int count = 1; - //string lastName = ""; - while(!in.eof()){ if (m->control_pressed) { in.close(); return 0; } - //read sequence name - string name = m->getline(in); m->gobble(in); - - if (name[0] == '@') { - vector splits = m->splitWhiteSpace(name); - name = splits[0]; - name = name.substr(1); - m->checkName(name); - names.push_back(name); - //get rest of lines - name = m->getline(in); m->gobble(in); - name = m->getline(in); m->gobble(in); - name = m->getline(in); m->gobble(in); - } + bool ignore; + FastqRead fread(in, ignore, format); m->gobble(in); + + if (!ignore) { names.push_back(fread.getName()); } - m->gobble(in); - if (m->debug) { count++; cout << "[DEBUG]: count = " + toString(count) + ", name = " + name + "\n"; } + if (m->debug) { count++; m->mothurOut("[DEBUG]: count = " + toString(count) + ", name = " + name + "\n"); } } in.close(); - //out.close(); return 0; diff --git a/source/commands/listseqscommand.h b/source/commands/listseqscommand.h index 9d320d9e..2a52defe 100644 --- a/source/commands/listseqscommand.h +++ b/source/commands/listseqscommand.h @@ -35,7 +35,7 @@ class ListSeqsCommand : public Command { private: vector names, outputNames; - string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile, fastqfile; + string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile, fastqfile, format; bool abort; int readFasta(); From c3d4858382d029fd9d349c6fbc0f53a22a909f58 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 22 Mar 2016 16:14:32 -0400 Subject: [PATCH 126/135] Adds fastqread class to make.fastq command #113 --- source/commands/makefastqcommand.cpp | 30 +++++-------- source/datastructures/fastqread.cpp | 85 ++++++++++++++++++++++++++++++++++++ source/datastructures/fastqread.h | 9 +++- 3 files changed, 103 insertions(+), 21 deletions(-) diff --git a/source/commands/makefastqcommand.cpp b/source/commands/makefastqcommand.cpp index e92205d1..7e36fd78 100644 --- a/source/commands/makefastqcommand.cpp +++ b/source/commands/makefastqcommand.cpp @@ -10,13 +10,14 @@ #include "makefastqcommand.h" #include "sequence.hpp" #include "qualityscores.h" +#include "fastqread.h" //********************************************************************************************************************** vector MakeFastQCommand::setParameters(){ try { CommandParameter pfasta("fasta", "InputTypes", "", "", "none", "none", "none","fastq",false,true,true); parameters.push_back(pfasta); CommandParameter pqfile("qfile", "InputTypes", "", "", "none", "none", "none","fastq",false,true,true); parameters.push_back(pqfile); - CommandParameter pformat("format", "Multiple", "sanger-illumina-illumina1.8+", "sanger", "", "", "","",false,false); parameters.push_back(pformat); + CommandParameter pformat("format", "Multiple", "sanger-illumina-solexa-illumina1.8+", "illumina1.8+", "", "", "","",false,false,true); parameters.push_back(pformat); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -36,7 +37,7 @@ string MakeFastQCommand::getHelpString(){ string helpString = ""; helpString += "The make.fastq command reads a fasta and quality file and creates a fastq file.\n"; helpString += "The make.fastq command parameters are fasta, qfile and format. fasta and qfile are required.\n"; - helpString += "The format parameter is used to indicate whether your sequences are sanger, illumina1.8+ or illumina, default=sanger.\n"; + helpString += "The format parameter is used to indicate whether your sequences are sanger, solexa, illumina1.8+ or illumina, default=illumina1.8+.\n"; helpString += "The make.fastq command should be in the following format: make.fastq(qfile=yourQualityFile, fasta=yourFasta).\n"; helpString += "Example make.fastq(fasta=amazon.fasta, qfile=amazon.qual).\n"; helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n"; @@ -146,12 +147,12 @@ MakeFastQCommand::MakeFastQCommand(string option) { //if the user changes the output directory command factory will send this info to us in the output parameter outputDir = validParameter.validFile(parameters, "outputdir", false); if (outputDir == "not found"){ outputDir = m->hasPath(fastafile); } - format = validParameter.validFile(parameters, "format", false); if (format == "not found"){ format = "sanger"; } + format = validParameter.validFile(parameters, "format", false); if (format == "not found"){ format = "illumina1.8+"; } - if ((format != "sanger") && (format != "illumina") && (format != "illumina1.8+")) { - m->mothurOut(format + " is not a valid format. Your format choices are sanger, illumina1.8+ and illumina, aborting." ); m->mothurOutEndLine(); - abort=true; - } + if ((format != "sanger") && (format != "illumina") && (format != "illumina1.8+") && (format != "solexa")) { + m->mothurOut(format + " is not a valid format. Your format choices are sanger, solexa, illumina1.8+ and illumina, aborting." ); m->mothurOutEndLine(); + abort=true; + } } @@ -189,18 +190,9 @@ int MakeFastQCommand::execute(){ Sequence currSeq(fFile); m->gobble(fFile); QualityScores currQual(qFile); m->gobble(qFile); - - if (currSeq.getName() != currQual.getName()) { m->mothurOut("[ERROR]: mismatch between fasta and quality files. Found " + currSeq.getName() + " in fasta file and " + currQual.getName() + " in quality file."); m->mothurOutEndLine(); m->control_pressed = true; } - else { - //print sequence - out << '@' << currSeq.getName() << endl << currSeq.getAligned() << endl; - - string qualityString = convertQual(currQual.getQualityScores()); - - //print quality info - out << '+' << currQual.getName() << endl << qualityString << endl; - } - + + FastqRead fread(currSeq, currQual, format); + fread.printFastq(out); } fFile.close(); diff --git a/source/datastructures/fastqread.cpp b/source/datastructures/fastqread.cpp index a852226a..d1f40ea4 100644 --- a/source/datastructures/fastqread.cpp +++ b/source/datastructures/fastqread.cpp @@ -18,6 +18,7 @@ FastqRead::FastqRead() { for (int i = -64; i < 65; i++) { char temp = (char) ((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499)); convertTable.push_back(temp); + convertBackTable.push_back(((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499))); } } catch(exception& e) { @@ -26,6 +27,62 @@ FastqRead::FastqRead() { } } /*******************************************************************************/ +FastqRead::FastqRead(Sequence s, QualityScores q) { + try { + m = MothurOut::getInstance(); format = "illumina1.8+"; + + //fill convert table - goes from solexa to sanger. Used fq_all2std.pl as a reference. + for (int i = -64; i < 65; i++) { + char temp = (char) ((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499)); + convertTable.push_back(temp); + convertBackTable.push_back(((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499))); + } + + if (s.getName() != q.getName()) { m->mothurOut("[ERROR]: sequence name does not match quality score name. Cannot construct fastq object.\n"); m->control_pressed = true; } + else { + name = s.getName(); + comment = s.getComment(); + sequence = s.getUnaligned(); + scores = q.getScores(); + scoreString = convertQual(scores); + } + + + } + catch(exception& e) { + m->errorOut(e, "FastqRead", "FastqRead"); + exit(1); + } +} +/*******************************************************************************/ +FastqRead::FastqRead(Sequence s, QualityScores q, string f) { + try { + m = MothurOut::getInstance(); format = f; + + //fill convert table - goes from solexa to sanger. Used fq_all2std.pl as a reference. + for (int i = -64; i < 65; i++) { + char temp = (char) ((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499)); + convertTable.push_back(temp); + convertBackTable.push_back(((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499))); + } + + if (s.getName() != q.getName()) { m->mothurOut("[ERROR]: sequence name does not match quality score name. Cannot construct fastq object.\n"); m->control_pressed = true; } + else { + name = s.getName(); + comment = s.getComment(); + sequence = s.getUnaligned(); + scores = q.getScores(); + scoreString = convertQual(scores); + } + + + } + catch(exception& e) { + m->errorOut(e, "FastqRead", "FastqRead"); + exit(1); + } +} +/*******************************************************************************/ FastqRead::FastqRead(string f) { try { m = MothurOut::getInstance(); @@ -34,6 +91,7 @@ FastqRead::FastqRead(string f) { for (int i = -64; i < 65; i++) { char temp = (char) ((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499)); convertTable.push_back(temp); + convertBackTable.push_back(((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499))); } } catch(exception& e) { @@ -51,6 +109,7 @@ FastqRead::FastqRead(string f, string n, string s, vector sc) { for (int i = -64; i < 65; i++) { char temp = (char) ((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499)); convertTable.push_back(temp); + convertBackTable.push_back(((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499))); } } catch(exception& e) { @@ -204,6 +263,31 @@ vector FastqRead::convertQual(string qual) { } } //********************************************************************************************************************** +string FastqRead::convertQual(vector qual) { + try { + string scoreString = ""; + + for (int i = 0; i < qual.size(); i++) { + int controlChar = int('!'); + if (format == "illumina") { controlChar = int('@'); } + + int temp = qual[i] + controlChar; + + if (format == "solexa") { temp = convertBackTable[temp]; } + + char qualChar = (char) temp; + + scoreString += qualChar; + } + + return scoreString; + } + catch(exception& e) { + m->errorOut(e, "FastqRead", "convertQual"); + exit(1); + } +} +//********************************************************************************************************************** Sequence FastqRead::getSequence() { try { Sequence temp(name, sequence); @@ -239,4 +323,5 @@ QualityScores FastqRead::getQuality() { exit(1); } } + /*******************************************************************************/ diff --git a/source/datastructures/fastqread.h b/source/datastructures/fastqread.h index 7bae3d1a..c50b39f3 100644 --- a/source/datastructures/fastqread.h +++ b/source/datastructures/fastqread.h @@ -28,6 +28,8 @@ class FastqRead { public: FastqRead(); + FastqRead(Sequence, QualityScores); + FastqRead(Sequence, QualityScores, string); FastqRead(string f); FastqRead(string f, string n, string s, vector sc); FastqRead(ifstream&, bool&, string f); @@ -36,6 +38,8 @@ class FastqRead { #endif ~FastqRead() {} + void setFormat(string f) { format = f; } + string getFormat() { return format; } string getName() { return name; } void setName(string n) { name = n; } string getSeq() { return sequence; } @@ -45,8 +49,7 @@ class FastqRead { Sequence getSequence(); QualityScores getQuality(); - - + private: MothurOut* m; vector scores; @@ -55,8 +58,10 @@ class FastqRead { string scoreString; string format; vector convertTable; + vector convertBackTable; vector convertQual(string qual); + string convertQual(vector); }; From 76e0e8f0379378fe765f16f0d07464ca7c8a2a68 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 23 Mar 2016 14:39:13 -0400 Subject: [PATCH 127/135] Adds fastqread to parse.fastq command #113 --- source/commands/parsefastaqcommand.cpp | 271 ++++++++++----------------------- source/commands/parsefastaqcommand.h | 19 +-- source/datastructures/fastqread.h | 2 + 3 files changed, 89 insertions(+), 203 deletions(-) diff --git a/source/commands/parsefastaqcommand.cpp b/source/commands/parsefastaqcommand.cpp index 9f8529f8..d4c75d96 100644 --- a/source/commands/parsefastaqcommand.cpp +++ b/source/commands/parsefastaqcommand.cpp @@ -445,57 +445,41 @@ int ParseFastaQCommand::processFile(vector files, TrimOligos*& trimOligo if (files[2] != "") { m->openInputFile(files[2], inFIndex); } if (files[3] != "") { m->openInputFile(files[3], inRIndex); } - - //fill convert table - goes from solexa to sanger. Used fq_all2std.pl as a reference. - for (int i = -64; i < 65; i++) { - char temp = (char) ((int)(33 + 10*log(1+pow(10,(i/10.0)))/log(10)+0.499)); - convertTable.push_back(temp); - } - int count = 0; while (!inf.eof() && !inr.eof()) { if (m->control_pressed) { break; } bool ignoref, ignorer; - fastqRead2 thisfRead = readFastq(inf, ignoref); - fastqRead2 thisrRead = readFastq(inr, ignorer); + FastqRead thisfRead(inf, ignoref, format); + FastqRead thisrRead(inr, ignorer, format); if (!ignoref && ! ignorer) { - vector fqualScores; - vector rqualScores; if (qual) { - fqualScores = convertQual(thisfRead.quality); - outfQual << ">" << thisfRead.seq.getName() << endl; - for (int i = 0; i < fqualScores.size(); i++) { outfQual << fqualScores[i] << " "; } - outfQual << endl; - - rqualScores = convertQual(thisrRead.quality); - outrQual << ">" << thisrRead.seq.getName() << endl; - for (int i = 0; i < rqualScores.size(); i++) { outrQual << rqualScores[i] << " "; } - outrQual << endl; + thisfRead.getQuality().printQScores(outfQual); + thisrRead.getQuality().printQScores(outrQual); } - if (m->control_pressed) { break; } - - if (pacbio) { - if (!qual) { rqualScores = convertQual(thisrRead.quality); fqualScores = convertQual(thisfRead.quality); } //convert if not done - string sequence = thisfRead.seq.getAligned(); - for (int i = 0; i < fqualScores.size(); i++) { - if (fqualScores[i] == 0){ sequence[i] = 'N'; } - } - thisfRead.seq.setAligned(sequence); + if (pacbio) { //change sequence bases with 0 quality scores to N + vector fqual = thisfRead.getScores(); + vector rqual = thisrRead.getScores(); + string fseq = thisfRead.getSeq(); + string rseq = thisrRead.getSeq(); + + for (int i = 0; i < fqual.size(); i++) { if (fqual[i] == 0){ fseq[i] = 'N'; } } + thisfRead.setSeq(fseq); - sequence = thisrRead.seq.getAligned(); - for (int i = 0; i < rqualScores.size(); i++) { - if (rqualScores[i] == 0){ sequence[i] = 'N'; } - } - thisrRead.seq.setAligned(sequence); + for (int i = 0; i < rqual.size(); i++) { if (rqual[i] == 0){ rseq[i] = 'N'; } } + thisrRead.setSeq(rseq); } //print sequence info to files - if (fasta) { thisfRead.seq.printSequence(outfFasta); thisrRead.seq.printSequence(outrFasta); } + if (fasta) { + thisfRead.getSequence().printSequence(outfFasta); + thisrRead.getSequence().printSequence(outrFasta); + } + if (m->control_pressed) { break; } if (split > 1) { Sequence findexBarcode("findex", "NONE"); Sequence rindexBarcode("rindex", "NONE"); @@ -503,52 +487,55 @@ int ParseFastaQCommand::processFile(vector files, TrimOligos*& trimOligo bool ignorefi, ignoreri; if (files[2] != "") { - fastqRead2 thisfiRead = readFastq(inFIndex, ignorefi); - if (!ignorefi) { findexBarcode.setAligned(thisfiRead.seq.getAligned()); } + FastqRead thisfiRead(inFIndex, ignorefi, format); + if (!ignorefi) { findexBarcode.setAligned(thisfiRead.getSequence().getAligned()); } } if (files[3] != "") { - fastqRead2 thisriRead = readFastq(inRIndex, ignoreri); - if (!ignoreri) { rindexBarcode.setAligned(thisriRead.seq.getAligned()); } + FastqRead thisriRead(inRIndex, ignoreri, format); + if (!ignoreri) { rindexBarcode.setAligned(thisriRead.getSequence().getAligned()); } } } int barcodeIndex, primerIndex, trashCodeLength; - if (oligosfile != "") { + if (oligosfile != "") { + QualityScores tempF = thisfRead.getQuality(); + QualityScores tempR = thisrRead.getQuality(); if ((files[2] != "") || (files[3] != "")) { - Sequence tempF = thisfRead.seq; - Sequence tempR = thisrRead.seq; - thisfRead.seq = findexBarcode; - thisrRead.seq = rindexBarcode; - trashCodeLength = findGroup(thisfRead, thisrRead, barcodeIndex, primerIndex, trimOligos, rtrimOligos, numBarcodes, numPrimers); - thisfRead.seq = tempF; - thisrRead.seq = tempR; + //barcode already removed so no need to reset sequence to trimmed version + trashCodeLength = findGroup(findexBarcode, tempF, rindexBarcode, tempR, barcodeIndex, primerIndex, trimOligos, rtrimOligos, numBarcodes, numPrimers); }else { - trashCodeLength = findGroup(thisfRead, thisrRead, barcodeIndex, primerIndex, trimOligos, rtrimOligos, numBarcodes, numPrimers); + Sequence tempSeqF = thisfRead.getSequence(); + Sequence tempSeqR = thisrRead.getSequence(); + trashCodeLength = findGroup(tempSeqF, tempF, tempSeqR, tempR, barcodeIndex, primerIndex, trimOligos, rtrimOligos, numBarcodes, numPrimers); + thisfRead.setSeq(tempSeqF.getUnaligned()); + thisrRead.setSeq(tempSeqR.getUnaligned()); } - }else if (groupfile != "") { trashCodeLength = findGroup(thisfRead, barcodeIndex, primerIndex, "groupMode"); } + thisfRead.setScores(tempF.getScores()); //set to trimmed scores + thisrRead.setScores(tempR.getScores()); + }else if (groupfile != "") { trashCodeLength = findGroup(thisfRead.getSequence(), barcodeIndex, primerIndex, "groupMode"); } else { m->mothurOut("[ERROR]: uh oh, we shouldn't be here...\n"); } if(trashCodeLength == 0){ ofstream out; m->openOutputFileAppend(fastqFileNames[barcodeIndex][primerIndex], out); - out << thisfRead.wholeRead; + thisfRead.printFastq(out); out.close(); ofstream out2; m->openOutputFileAppend(rfastqFileNames[barcodeIndex][primerIndex], out2); - out2 << thisrRead.wholeRead; + thisrRead.printFastq(out2); out2.close(); //print no match fasta, if wanted if (fasta) { ofstream outf, outr; m->openOutputFileAppend(fastaFileNames[barcodeIndex][primerIndex], outf); - thisfRead.seq.printSequence(outf); + thisfRead.getSequence().printSequence(outf); outf.close(); m->openOutputFileAppend(rfastaFileNames[barcodeIndex][primerIndex], outr); - thisrRead.seq.printSequence(outr); + thisrRead.getSequence().printSequence(outr); outr.close(); } @@ -556,15 +543,11 @@ int ParseFastaQCommand::processFile(vector files, TrimOligos*& trimOligo if (qual) { ofstream outq, outq2; m->openOutputFileAppend(qualFileNames[barcodeIndex][primerIndex], outq); - outq << ">" << thisfRead.seq.getName() << endl; - for (int i = 0; i < fqualScores.size(); i++) { outq << fqualScores[i] << " "; } - outq << endl; + thisfRead.getQuality().printQScores(outq); outq.close(); m->openOutputFileAppend(rqualFileNames[barcodeIndex][primerIndex], outq2); - outq2 << ">" << thisrRead.seq.getName() << endl; - for (int i = 0; i < rqualScores.size(); i++) { outq2 << rqualScores[i] << " "; } - outq2 << endl; + thisrRead.getQuality().printQScores(outq2); outq2.close(); } @@ -572,22 +555,22 @@ int ParseFastaQCommand::processFile(vector files, TrimOligos*& trimOligo //print no match fastq ofstream out, out2; m->openOutputFileAppend(ffqnoMatchFile, out); - out << thisfRead.wholeRead; + thisfRead.printFastq(out); out.close(); m->openOutputFileAppend(rfqnoMatchFile, out2); - out2 << thisrRead.wholeRead; + thisrRead.printFastq(out2); out2.close(); //print no match fasta, if wanted if (fasta) { ofstream outf, outr; m->openOutputFileAppend(ffnoMatchFile, outf); - thisfRead.seq.printSequence(outf); + thisfRead.getSequence().printSequence(outf); outf.close(); m->openOutputFileAppend(rfnoMatchFile, outr); - thisrRead.seq.printSequence(outr); + thisrRead.getSequence().printSequence(outr); outr.close(); } @@ -595,15 +578,11 @@ int ParseFastaQCommand::processFile(vector files, TrimOligos*& trimOligo if (qual) { ofstream outq, outq2; m->openOutputFileAppend(fqnoMatchFile, outq); - outq << ">" << thisfRead.seq.getName() << endl; - for (int i = 0; i < fqualScores.size(); i++) { outq << fqualScores[i] << " "; } - outq << endl; + thisfRead.getQuality().printQScores(outq); outq.close(); m->openOutputFileAppend(rqnoMatchFile, outq2); - outq2 << ">" << thisrRead.seq.getName() << endl; - for (int i = 0; i < rqualScores.size(); i++) { outq2 << rqualScores[i] << " "; } - outq2 << endl; + thisrRead.getQuality().printQScores(outq2); outq2.close(); } } @@ -663,49 +642,48 @@ int ParseFastaQCommand::processFile(string inputfile, TrimOligos*& trimOligos, T if (m->control_pressed) { break; } bool ignore; - fastqRead2 thisRead = readFastq(in, ignore); + FastqRead thisRead(in, ignore, format); if (!ignore) { - vector qualScores; - if (qual) { - qualScores = convertQual(thisRead.quality); - outQual << ">" << thisRead.seq.getName() << endl; - for (int i = 0; i < qualScores.size(); i++) { outQual << qualScores[i] << " "; } - outQual << endl; - } - - if (m->control_pressed) { break; } + if (qual) { thisRead.getQuality().printQScores(outQual); } if (pacbio) { - if (!qual) { qualScores = convertQual(thisRead.quality); } //convert if not done - string sequence = thisRead.seq.getAligned(); - for (int i = 0; i < qualScores.size(); i++) { - if (qualScores[i] == 0){ sequence[i] = 'N'; } - } - thisRead.seq.setAligned(sequence); + vector qual = thisRead.getScores(); + string seq = thisRead.getSeq(); + + for (int i = 0; i < qual.size(); i++) { if (qual[i] == 0){ seq[i] = 'N'; } } + thisRead.setSeq(seq); } //print sequence info to files - if (fasta) { thisRead.seq.printSequence(outFasta); } + if (fasta) { thisRead.getSequence().printSequence(outFasta); } + + if (m->control_pressed) { break; } if (split > 1) { int barcodeIndex, primerIndex, trashCodeLength; - if (oligosfile != "") { trashCodeLength = findGroup(thisRead, barcodeIndex, primerIndex, trimOligos, rtrimOligos, numBarcodes, numPrimers); } - else if (groupfile != "") { trashCodeLength = findGroup(thisRead, barcodeIndex, primerIndex, "groupMode"); } + if (oligosfile != "") { + Sequence tempSeq = thisRead.getSequence(); + QualityScores tempQual = thisRead.getQuality(); + trashCodeLength = findGroup(tempSeq, tempQual, barcodeIndex, primerIndex, trimOligos, rtrimOligos, numBarcodes, numPrimers); + thisRead.setSeq(tempSeq.getUnaligned()); + thisRead.setScores(tempQual.getScores()); + } + else if (groupfile != "") { trashCodeLength = findGroup(thisRead.getSequence(), barcodeIndex, primerIndex, "groupMode"); } else { m->mothurOut("[ERROR]: uh oh, we shouldn't be here...\n"); } if(trashCodeLength == 0){ //files in here are per group //print fastq to barcode and primer match ofstream out; m->openOutputFileAppend(fastqFileNames[barcodeIndex][primerIndex], out); - out << thisRead.wholeRead; + thisRead.printFastq(out); out.close(); //print fasta match if wanted if (fasta) { ofstream outf; m->openOutputFileAppend(fastaFileNames[barcodeIndex][primerIndex], outf); - thisRead.seq.printSequence(outf); + thisRead.getSequence().printSequence(outf); outf.close(); } @@ -713,22 +691,21 @@ int ParseFastaQCommand::processFile(string inputfile, TrimOligos*& trimOligos, T if (qual) { ofstream outq; m->openOutputFileAppend(qualFileNames[barcodeIndex][primerIndex], outq); - outq << ">" << thisRead.seq.getName() << endl; - for (int i = 0; i < qualScores.size(); i++) { outq << qualScores[i] << " "; } + thisRead.getQuality().printQScores(outq); outq.close(); } }else{ //print no match fastq ofstream out; m->openOutputFileAppend(ffqnoMatchFile, out); - out << thisRead.wholeRead; + thisRead.printFastq(out); out.close(); //print no match fasta, if wanted if (fasta) { ofstream outf; m->openOutputFileAppend(ffnoMatchFile, outf); - thisRead.seq.printSequence(outf); + thisRead.getSequence().printSequence(outf); outf.close(); } @@ -736,8 +713,7 @@ int ParseFastaQCommand::processFile(string inputfile, TrimOligos*& trimOligos, T if (qual) { ofstream outq; m->openOutputFileAppend(fqnoMatchFile, outq); - outq << ">" << thisRead.seq.getName() << endl; - for (int i = 0; i < qualScores.size(); i++) { outq << qualScores[i] << " "; } + thisRead.getQuality().printQScores(outq); outq.close(); } } @@ -764,97 +740,14 @@ int ParseFastaQCommand::processFile(string inputfile, TrimOligos*& trimOligos, T } } //********************************************************************************************************************** -fastqRead2 ParseFastaQCommand::readFastq(ifstream& in, bool& ignore){ - try { - ignore = false; - string wholeRead = ""; - - //read sequence name - string line = m->getline(in); m->gobble(in); if (split > 1) { wholeRead += line + "\n"; } - vector pieces = m->splitWhiteSpace(line); - string name = ""; if (pieces.size() != 0) { name = pieces[0]; } - if (name == "") { m->mothurOut("[WARNING]: Blank fasta name, ignoring read."); m->mothurOutEndLine(); ignore=true; } - else if (name[0] != '@') { m->mothurOut("[WARNING]: reading " + name + " expected a name with @ as a leading character, ignoring read."); m->mothurOutEndLine(); ignore=true; } - else { name = name.substr(1); } - - //read sequence - string sequence = m->getline(in); m->gobble(in); if (split > 1) { wholeRead += sequence + "\n"; } - if (sequence == "") { m->mothurOut("[WARNING]: missing sequence for " + name + ", ignoring."); ignore=true; } - - //read sequence name - line = m->getline(in); m->gobble(in); if (split > 1) { wholeRead += line + "\n"; } - pieces = m->splitWhiteSpace(line); - string name2 = ""; if (pieces.size() != 0) { name2 = pieces[0]; } - if (name2 == "") { m->mothurOut("[WARNING]: expected a name with + as a leading character, ignoring."); ignore=true; } - else if (name2[0] != '+') { m->mothurOut("[WARNING]: reading " + name2 + " expected a name with + as a leading character, ignoring."); ignore=true; } - else { name2 = name2.substr(1); if (name2 == "") { name2 = name; } } - - - //read quality scores - string quality = m->getline(in); m->gobble(in); if (split > 1) { wholeRead += quality + "\n"; } - if (quality == "") { m->mothurOut("[WARNING]: missing quality for " + name2 + ", ignoring."); ignore=true; } - - //sanity check sequence length and number of quality scores match - if (name2 != "") { if (name != name2) { m->mothurOut("[WARNING]: names do not match. read " + name + " for fasta and " + name2 + " for quality, ignoring."); ignore=true; } } - if (quality.length() != sequence.length()) { m->mothurOut("[WARNING]: Lengths do not match for sequence " + name + ". Read " + toString(sequence.length()) + " characters for fasta and " + toString(quality.length()) + " characters for quality scores, ignoring read."); ignore=true; } - - m->checkName(name); - Sequence seq(name, sequence); - fastqRead2 read(seq, quality, wholeRead); - - if (m->debug) { m->mothurOut("[DEBUG]: " + read.seq.getName() + " " + read.seq.getAligned() + " " + quality + "\n"); } - - return read; - } - catch(exception& e) { - m->errorOut(e, "ParseFastaQCommand", "readFastq"); - exit(1); - } -} - -//********************************************************************************************************************** -vector ParseFastaQCommand::convertQual(string qual) { - try { - vector qualScores; - - bool negativeScores = false; - - for (int i = 0; i < qual.length(); i++) { - - int temp = 0; - temp = int(qual[i]); - if (format == "illumina") { - temp -= 64; //char '@' - }else if (format == "illumina1.8+") { - temp -= int('!'); //char '!' - }else if (format == "solexa") { - temp = int(convertTable[temp]); //convert to sanger - temp -= int('!'); //char '!' - }else { - temp -= int('!'); //char '!' - } - if (temp < -5) { negativeScores = true; } - qualScores.push_back(temp); - } - - if (negativeScores) { m->mothurOut("[ERROR]: finding negative quality scores, do you have the right format selected? http://en.wikipedia.org/wiki/FASTQ_format#Encoding \n"); m->control_pressed = true; } - - return qualScores; - } - catch(exception& e) { - m->errorOut(e, "ParseFastaQCommand", "convertQual"); - exit(1); - } -} -//********************************************************************************************************************** -int ParseFastaQCommand::findGroup(fastqRead2 thisRead, int& barcode, int& primer, TrimOligos*& trimOligos, TrimOligos*& rtrimOligos, int numBarcodes, int numPrimers) { +int ParseFastaQCommand::findGroup(Sequence& currSeq, QualityScores& currQual, int& barcode, int& primer, TrimOligos*& trimOligos, TrimOligos*& rtrimOligos, int numBarcodes, int numPrimers) { try { int success = 1; string trashCode = ""; int currentSeqsDiffs = 0; - Sequence currSeq(thisRead.seq.getName(), thisRead.seq.getAligned()); - QualityScores currQual; currQual.setScores(convertQual(thisRead.quality)); + //Sequence currSeq(thisRead.seq.getName(), thisRead.seq.getAligned()); + //QualityScores currQual; currQual.setScores(convertQual(thisRead.quality)); //for reorient Sequence savedSeq(currSeq.getName(), currSeq.getAligned()); @@ -954,12 +847,12 @@ int ParseFastaQCommand::findGroup(fastqRead2 thisRead, int& barcode, int& primer } } //********************************************************************************************************************** -int ParseFastaQCommand::findGroup(fastqRead2 thisRead, int& barcode, int& primer, string groupMode) { +int ParseFastaQCommand::findGroup(Sequence seq, int& barcode, int& primer, string groupMode) { try { string trashCode = ""; primer = 0; - string group = groupMap->getGroup(thisRead.seq.getName()); + string group = groupMap->getGroup(seq.getName()); if (group == "not found") { trashCode += "g"; } //scrap for group else { barcode = GroupToFile[group]; } @@ -971,16 +864,16 @@ int ParseFastaQCommand::findGroup(fastqRead2 thisRead, int& barcode, int& primer } } //********************************************************************************************************************** -int ParseFastaQCommand::findGroup(fastqRead2 thisfRead, fastqRead2 thisrRead, int& barcode, int& primer, TrimOligos*& trimOligos, TrimOligos*& rtrimOligos, int numBarcodes, int numPrimers) { +int ParseFastaQCommand::findGroup(Sequence& fcurrSeq, QualityScores& fcurrQual, Sequence& rcurrSeq, QualityScores& rcurrQual, int& barcode, int& primer, TrimOligos*& trimOligos, TrimOligos*& rtrimOligos, int numBarcodes, int numPrimers) { try { int success = 1; string trashCode = ""; int currentSeqsDiffs = 0; - Sequence fcurrSeq(thisfRead.seq.getName(), thisfRead.seq.getAligned()); - QualityScores fcurrQual; fcurrQual.setScores(convertQual(thisfRead.quality)); - Sequence rcurrSeq(thisrRead.seq.getName(), thisrRead.seq.getAligned()); - QualityScores rcurrQual; rcurrQual.setScores(convertQual(thisrRead.quality)); + //Sequence fcurrSeq(thisfRead.seq.getName(), thisfRead.seq.getAligned()); + //QualityScores fcurrQual; fcurrQual.setScores(convertQual(thisfRead.quality)); + //Sequence rcurrSeq(thisrRead.seq.getName(), thisrRead.seq.getAligned()); + //QualityScores rcurrQual; rcurrQual.setScores(convertQual(thisrRead.quality)); //for reorient Sequence fsavedSeq(fcurrSeq.getName(), fcurrSeq.getAligned()); diff --git a/source/commands/parsefastaqcommand.h b/source/commands/parsefastaqcommand.h index 5e977de9..1b2f5958 100644 --- a/source/commands/parsefastaqcommand.h +++ b/source/commands/parsefastaqcommand.h @@ -14,19 +14,10 @@ #include "command.hpp" #include "trimoligos.h" #include "sequence.hpp" +#include "fastqread.h" #include "groupmap.h" #include "oligos.h" -struct fastqRead2 { - string quality; - Sequence seq; - string wholeRead; - - fastqRead2() { }; - fastqRead2(Sequence s, string q, string w) : seq(s), quality(q), wholeRead(w){}; - ~fastqRead2() {}; -}; - class ParseFastaQCommand : public Command { @@ -75,10 +66,10 @@ class ParseFastaQCommand : public Command { vector convertTable; bool readOligos(string oligosFile); bool readGroup(string oligosFile); - fastqRead2 readFastq(ifstream&, bool&); - int findGroup(fastqRead2, int&, int&, TrimOligos*&, TrimOligos*&, int, int); - int findGroup(fastqRead2, int&, int&, string); - int findGroup(fastqRead2, fastqRead2, int&, int&, TrimOligos*&, TrimOligos*&, int, int); + //fastqRead2 readFastq(ifstream&, bool&); + int findGroup(Sequence&, QualityScores&, int&, int&, TrimOligos*&, TrimOligos*&, int, int); + int findGroup(Sequence, int&, int&, string); + int findGroup(Sequence&, QualityScores&, Sequence&, QualityScores&, int&, int&, TrimOligos*&, TrimOligos*&, int, int); }; diff --git a/source/datastructures/fastqread.h b/source/datastructures/fastqread.h index c50b39f3..fb5dc4b4 100644 --- a/source/datastructures/fastqread.h +++ b/source/datastructures/fastqread.h @@ -43,7 +43,9 @@ class FastqRead { string getName() { return name; } void setName(string n) { name = n; } string getSeq() { return sequence; } + void setSeq(string s) { sequence = s; } vector getScores() { return scores; } + void setScores(vector s) { scores = s; } void printFastq(ostream&); Sequence getSequence(); From f0f6cbf5579e3cc74cbab9928ca958f34101b6dc Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 23 Mar 2016 14:42:47 -0400 Subject: [PATCH 128/135] Adds fastqread to remove.seqs #113 --- source/commands/removeseqscommand.cpp | 31 ++++++++++++++++--------------- source/commands/removeseqscommand.h | 2 +- 2 files changed, 17 insertions(+), 16 deletions(-) diff --git a/source/commands/removeseqscommand.cpp b/source/commands/removeseqscommand.cpp index 71abde1f..dc47cb1f 100644 --- a/source/commands/removeseqscommand.cpp +++ b/source/commands/removeseqscommand.cpp @@ -11,6 +11,7 @@ #include "sequence.hpp" #include "listvector.hpp" #include "counttable.h" +#include "fastqread.h" //********************************************************************************************************************** vector RemoveSeqsCommand::setParameters(){ @@ -27,6 +28,7 @@ vector RemoveSeqsCommand::setParameters(){ CommandParameter paccnos("accnos", "InputTypes", "", "", "none", "none", "none","",false,true,true); parameters.push_back(paccnos); CommandParameter pdups("dups", "Boolean", "", "T", "", "", "","",false,false); parameters.push_back(pdups); CommandParameter pseed("seed", "Number", "", "0", "", "", "","",false,false); parameters.push_back(pseed); + CommandParameter pformat("format", "Multiple", "sanger-illumina-solexa-illumina1.8+", "illumina1.8+", "", "", "","",false,false,true); parameters.push_back(pformat); CommandParameter pinputdir("inputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(pinputdir); CommandParameter poutputdir("outputdir", "String", "", "", "", "", "","",false,false); parameters.push_back(poutputdir); @@ -46,6 +48,7 @@ string RemoveSeqsCommand::getHelpString(){ helpString += "The remove.seqs command reads an .accnos file and at least one of the following file types: fasta, name, group, count, list, taxonomy, quality, fastq or alignreport file.\n"; helpString += "It outputs a file containing the sequences NOT in the .accnos file.\n"; helpString += "The remove.seqs command parameters are accnos, fasta, name, group, count, list, taxonomy, qfile, alignreport, fastq and dups. You must provide accnos and at least one of the file parameters.\n"; + helpString += "The format parameter is used to indicate whether your sequences are sanger, solexa, illumina1.8+ or illumina, default=illumina1.8+.\n"; helpString += "The dups parameter allows you to remove the entire line from a name file if you remove any name from the line. default=true. \n"; helpString += "The remove.seqs command should be in the following format: remove.seqs(accnos=yourAccnos, fasta=yourFasta).\n"; helpString += "Example remove.seqs(accnos=amazon.accnos, fasta=amazon.fasta).\n"; @@ -305,6 +308,13 @@ RemoveSeqsCommand::RemoveSeqsCommand(string option) { parser.getNameFile(files); } } + + format = validParameter.validFile(parameters, "format", false); if (format == "not found"){ format = "illumina1.8+"; } + + if ((format != "sanger") && (format != "illumina") && (format != "illumina1.8+") && (format != "solexa")) { + m->mothurOut(format + " is not a valid format. Your format choices are sanger, solexa, illumina1.8+ and illumina, aborting." ); m->mothurOutEndLine(); + abort=true; + } } } @@ -484,26 +494,17 @@ int RemoveSeqsCommand::readFastq(){ if (m->control_pressed) { in.close(); out.close(); m->mothurRemove(outputFileName); return 0; } - //read sequence name - string input = m->getline(in); m->gobble(in); - - string outputString = input + "\n"; + //read sequence name + bool ignore; + FastqRead fread(in, ignore, format); m->gobble(in); - if (input[0] == '@') { - //get rest of lines - outputString += m->getline(in) + "\n"; m->gobble(in); - outputString += m->getline(in) + "\n"; m->gobble(in); - outputString += m->getline(in) + "\n"; m->gobble(in); - - vector splits = m->splitWhiteSpace(input); - string name = splits[0]; - name = name.substr(1); - m->checkName(name); + if (!ignore) { + string name = fread.getName(); if (names.count(name) == 0) { if (uniqueNames.count(name) == 0) { //this name hasn't been seen yet wroteSomething = true; - out << outputString; + fread.printFastq(out); uniqueNames.insert(name); }else { m->mothurOut("[WARNING]: " + name + " is in your fastq file more than once. Mothur requires sequence names to be unique. I will only add it once.\n"); diff --git a/source/commands/removeseqscommand.h b/source/commands/removeseqscommand.h index 7aaff172..b86ca717 100644 --- a/source/commands/removeseqscommand.h +++ b/source/commands/removeseqscommand.h @@ -35,7 +35,7 @@ class RemoveSeqsCommand : public Command { private: set names; - string accnosfile, fastafile, fastqfile, namefile, groupfile, countfile, alignfile, listfile, taxfile, qualfile, outputDir; + string accnosfile, fastafile, fastqfile, namefile, groupfile, countfile, alignfile, listfile, taxfile, qualfile, outputDir, format; bool abort, dups; vector outputNames; map uniqueMap; From b4d8093f00cdcae8fce0540343dae34d7baa3f20 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Mon, 28 Mar 2016 12:58:55 -0400 Subject: [PATCH 129/135] Creates dataset class for testing Includes data from final.fasta, final.names, final.groups, final.count_table and final.an.shared. --- Mothur.xcodeproj/project.pbxproj | 12 + TestMothur/dataset.cpp | 192813 ++++++++++++++++++++++++++++++++ TestMothur/dataset.h | 42 + TestMothur/main.cpp | 2 +- TestMothur/testvsearchfileparser.cpp | 9 + TestMothur/testvsearchfileparser.h | 25 + source/datastructures/groupmap.cpp | 24 + source/datastructures/groupmap.h | 2 +- source/vsearchfileparser.h | 4 + 9 files changed, 192931 insertions(+), 2 deletions(-) create mode 100644 TestMothur/dataset.cpp create mode 100644 TestMothur/dataset.h create mode 100644 TestMothur/testvsearchfileparser.cpp create mode 100644 TestMothur/testvsearchfileparser.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 81b32520..36d674cd 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -389,6 +389,8 @@ 48C728751B6AB4CD00D40830 /* testgetgroupscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728731B6AB4CD00D40830 /* testgetgroupscommand.cpp */; }; 48C728791B728D6B00D40830 /* biominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728771B728D6B00D40830 /* biominfocommand.cpp */; }; 48C7287A1B728D6B00D40830 /* biominfocommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48C728771B728D6B00D40830 /* biominfocommand.cpp */; }; + 48D6E9681CA42389008DF76B /* testvsearchfileparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48D6E9661CA42389008DF76B /* testvsearchfileparser.cpp */; }; + 48D6E96B1CA4262A008DF76B /* dataset.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48D6E9691CA4262A008DF76B /* dataset.cpp */; }; 48DB37B31B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48DB37B41B3B27E000C372A4 /* makefilecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */; }; 48E981CF189C38FB0042BE9D /* (null) in Sources */ = {isa = PBXBuildFile; }; @@ -832,6 +834,10 @@ 48C728761B6AB4EE00D40830 /* testsequence.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testsequence.h; path = testcontainers/testsequence.h; sourceTree = ""; }; 48C728771B728D6B00D40830 /* biominfocommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = biominfocommand.cpp; path = source/commands/biominfocommand.cpp; sourceTree = ""; }; 48C728781B728D6B00D40830 /* biominfocommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = biominfocommand.h; path = source/commands/biominfocommand.h; sourceTree = ""; }; + 48D6E9661CA42389008DF76B /* testvsearchfileparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = testvsearchfileparser.cpp; sourceTree = ""; }; + 48D6E9671CA42389008DF76B /* testvsearchfileparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = testvsearchfileparser.h; sourceTree = ""; }; + 48D6E9691CA4262A008DF76B /* dataset.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = dataset.cpp; sourceTree = ""; }; + 48D6E96A1CA4262A008DF76B /* dataset.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = dataset.h; sourceTree = ""; }; 48DB37B11B3B27E000C372A4 /* makefilecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = makefilecommand.cpp; path = source/commands/makefilecommand.cpp; sourceTree = ""; }; 48DB37B21B3B27E000C372A4 /* makefilecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = makefilecommand.h; path = source/commands/makefilecommand.h; sourceTree = ""; }; 48F98E4C1A9CFD670005E81B /* completelinkage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = completelinkage.cpp; path = source/completelinkage.cpp; sourceTree = ""; }; @@ -1713,6 +1719,10 @@ children = ( 481FB5201AC0A6B60076CFF3 /* catch.hpp */, 481FB51B1AC0A63E0076CFF3 /* main.cpp */, + 48D6E9691CA4262A008DF76B /* dataset.cpp */, + 48D6E96A1CA4262A008DF76B /* dataset.h */, + 48D6E9661CA42389008DF76B /* testvsearchfileparser.cpp */, + 48D6E9671CA42389008DF76B /* testvsearchfileparser.h */, 481FB5221AC0AA010076CFF3 /* testcontainers */, 481FB5211AC0A9B40076CFF3 /* testcommands */, ); @@ -2878,6 +2888,7 @@ 481FB5B31AC1B7300076CFF3 /* deuniquetreecommand.cpp in Sources */, 481FB5D91AC1B75C0076CFF3 /* makefastqcommand.cpp in Sources */, 481FB5A21AC1B71B0076CFF3 /* clearcutcommand.cpp in Sources */, + 48D6E9681CA42389008DF76B /* testvsearchfileparser.cpp in Sources */, 481FB5851AC1B6FF0076CFF3 /* chimeracheckrdp.cpp in Sources */, 481FB55C1AC1B6660076CFF3 /* sharedbraycurtis.cpp in Sources */, 481FB5BE1AC1B74F0076CFF3 /* getmetacommunitycommand.cpp in Sources */, @@ -2913,6 +2924,7 @@ 481FB6921AC1BAA60076CFF3 /* taxonomyequalizer.cpp in Sources */, 481FB68A1AC1BA9E0076CFF3 /* alignnode.cpp in Sources */, 481FB58B1AC1B6FF0076CFF3 /* pintail.cpp in Sources */, + 48D6E96B1CA4262A008DF76B /* dataset.cpp in Sources */, 481FB6041AC1B7970076CFF3 /* sensspeccommand.cpp in Sources */, 481FB6491AC1B7F40076CFF3 /* suffixdb.cpp in Sources */, 481FB6111AC1B7AC0076CFF3 /* splitabundcommand.cpp in Sources */, diff --git a/TestMothur/dataset.cpp b/TestMothur/dataset.cpp new file mode 100644 index 00000000..90848e2d --- /dev/null +++ b/TestMothur/dataset.cpp @@ -0,0 +1,192813 @@ +// +// dataset.cpp +// Mothur +// +// Created by Sarah Westcott on 3/24/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#include "dataset.h" +/***********************************************************************/ +TestDataSet::TestDataSet() { + m = MothurOut::getInstance(); +} +/***********************************************************************/ +void TestDataSet::createCountTable() { + fillGroup(); + fillNames(); + ct = new CountTable(); + for (map::iterator itNameMap = nameMap.begin(); itNameMap !=nameMap.end(); itNameMap++) { + string firstCol = itNameMap->first; + string secondCol = itNameMap->second; + vector names; + m->splitAtChar(secondCol, names, ','); + + //set to 0 + map groupCounts; + int total = 0; + vector Groups = gMap->getNamesOfGroups(); + ct.setNamesOfGroups(Groups); + for (int i = 0; i < Groups.size(); i++) { groupCounts[Groups[i]] = 0; } + + //get counts for each of the users groups + for (int i = 0; i < names.size(); i++) { + string group = gMap->getGroup(names[i]); + + map::iterator it = groupCounts.find(group); + + //if not found, then this sequence is not from a group we care about + if (it != groupCounts.end()) { + it->second++; + total++; + } + } + + if (total != 0) { + vector abunds; + for (map::iterator it = groupCounts.begin(); it != groupCounts.end(); it++) { abunds.push_back(it->second); } + ct.push_back(firstCol, abunds); + } + } + delete gMap; + nameMap.clear(); +} +/***********************************************************************/ + +void TestDataSet::fillSeqs() { + //fill seqs with final.fasta + +string name = "GQY1XT001CFHYQ"; +string align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1(name, align); +seqs.push_back(newSeq1); +name = "GQY1XT001C44N8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2(name, align); +seqs.push_back(newSeq2); +name = "GQY1XT001C296C"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3(name, align); +seqs.push_back(newSeq3); +name = "GQY1XT001ARCB1"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq4(name, align); +seqs.push_back(newSeq4); +name = "GQY1XT001A146F"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq5(name, align); +seqs.push_back(newSeq5); +name = "GQY1XT001CE14C"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq6(name, align); +seqs.push_back(newSeq6); +name = "GQY1XT001DOO7Q"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq7(name, align); +seqs.push_back(newSeq7); +name = "GQY1XT001A2EZX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq8(name, align); +seqs.push_back(newSeq8); +name = "GQY1XT001AYMEB"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq9(name, align); +seqs.push_back(newSeq9); +name = "GQY1XT001DC1IC"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq10(name, align); +seqs.push_back(newSeq10); +name = "GQY1XT001DE4SZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq11(name, align); +seqs.push_back(newSeq11); +name = "GQY1XT001BNM96"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq12(name, align); +seqs.push_back(newSeq12); +name = "GQY1XT001AK7BA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq13(name, align); +seqs.push_back(newSeq13); +name = "GQY1XT001BCUK5"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq14(name, align); +seqs.push_back(newSeq14); +name = "GQY1XT001A05IW"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq15(name, align); +seqs.push_back(newSeq15); +name = "GQY1XT001AN2XX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq16(name, align); +seqs.push_back(newSeq16); +name = "GQY1XT001CTNPK"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C----G-G---------------GA-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq17(name, align); +seqs.push_back(newSeq17); +name = "GQY1XT001D5GRM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-A-C--T-C-G-A-G-A-G-G-GA-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CT-CC-T-A-TCT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-C-G-G-CT-G-C-C--C-G-G-G-C--C-------GAT-TGA-----G-G-T-C-T-G-G-G-T-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq18(name, align); +seqs.push_back(newSeq18); +name = "GQY1XT001DR1VM"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq19(name, align); +seqs.push_back(newSeq19); +name = "GQY1XT001BA2S8"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq20(name, align); +seqs.push_back(newSeq20); +name = "GQY1XT001EGASM"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq21(name, align); +seqs.push_back(newSeq21); +name = "GQY1XT001BKUTY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq22(name, align); +seqs.push_back(newSeq22); +name = "GQY1XT001AFH3B"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq23(name, align); +seqs.push_back(newSeq23); +name = "GQY1XT001BPI4U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq24(name, align); +seqs.push_back(newSeq24); +name = "GQY1XT001A7N0G"; +align = "A-A--A-A--GA-T-A-C-T-G-C--AA-A-G-C--T-A-G-A-G-T-A-T-GA-CA-G-A-G-G-C-A--AG-T-GG-A-ACT-A-C-A-T-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AA--AT-A-TA-T-G-T-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GT-CG-A-T-ACT--GACA-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-T--G-G-T---------------GA-GA------------A-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq25(name, align); +seqs.push_back(newSeq25); +name = "GQY1XT001AIUIJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq26(name, align); +seqs.push_back(newSeq26); +name = "GQY1XT001EDNHY"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq27(name, align); +seqs.push_back(newSeq27); +name = "GQY1XT001DPAC5"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq28(name, align); +seqs.push_back(newSeq28); +name = "GQY1XT001D93B0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-A-C--T-C-G-A-G-A-G-G-GA-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CT-CC-T-G-TCT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-C-G-G-TT-G-C-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq29(name, align); +seqs.push_back(newSeq29); +name = "GQY1XT001AM8UY"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq30(name, align); +seqs.push_back(newSeq30); +name = "GQY1XT001DXDJ4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C----TA-A-----G-C-A-T-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq31(name, align); +seqs.push_back(newSeq31); +name = "GQY1XT001BO1NW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq32(name, align); +seqs.push_back(newSeq32); +name = "GQY1XT001CUIQF"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq33(name, align); +seqs.push_back(newSeq33); +name = "GQY1XT001CQ0HR"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq34(name, align); +seqs.push_back(newSeq34); +name = "GQY1XT001BUOY9"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq35(name, align); +seqs.push_back(newSeq35); +name = "GQY1XT001A5M3K"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq36(name, align); +seqs.push_back(newSeq36); +name = "GQY1XT001APUDR"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq37(name, align); +seqs.push_back(newSeq37); +name = "GQY1XT001DTSOS"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-G----A---C----AT-AA----G-T-T-T-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq38(name, align); +seqs.push_back(newSeq38); +name = "GQY1XT001DOHBW"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq39(name, align); +seqs.push_back(newSeq39); +name = "GQY1XT001DLRT5"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq40(name, align); +seqs.push_back(newSeq40); +name = "GQY1XT001B1YL9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq41(name, align); +seqs.push_back(newSeq41); +name = "GQY1XT001COTQS"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq42(name, align); +seqs.push_back(newSeq42); +name = "GQY1XT001B2H0U"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CT-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-T--GG-C-GG-A-ATT-C-C-G-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-C-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CA-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--AA-C-T-A-G-GT-G-TGG--G-G-G---G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-GC--T-AA-C-G-C-A-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq43(name, align); +seqs.push_back(newSeq43); +name = "GQY1XT001BHSTH"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq44(name, align); +seqs.push_back(newSeq44); +name = "GQY1XT001A11OV"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq45(name, align); +seqs.push_back(newSeq45); +name = "GQY1XT001DEX9U"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GACC------C-C-T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq46(name, align); +seqs.push_back(newSeq46); +name = "GQY1XT001D9BN9"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-G-A-G-GT-G-T-C--G-G-G-A-G--G---C----AG-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq47(name, align); +seqs.push_back(newSeq47); +name = "GQY1XT001DW1V5"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq48(name, align); +seqs.push_back(newSeq48); +name = "GQY1XT001AWZI0"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq49(name, align); +seqs.push_back(newSeq49); +name = "GQY1XT001ALHWC"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-TGT-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq50(name, align); +seqs.push_back(newSeq50); +name = "GQY1XT001ECPOA"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----TA-CG----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq51(name, align); +seqs.push_back(newSeq51); +name = "GQY1XT001D7RD3"; +align = "A-T--A-A--CG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A-----------GG-AA--------T-T-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq52(name, align); +seqs.push_back(newSeq52); +name = "GQY1XT001BXUR6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq53(name, align); +seqs.push_back(newSeq53); +name = "GQY1XT001AG9HZ"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq54(name, align); +seqs.push_back(newSeq54); +name = "GQY1XT001A1M68"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq55(name, align); +seqs.push_back(newSeq55); +name = "GQY1XT001EC06X"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq56(name, align); +seqs.push_back(newSeq56); +name = "GQY1XT001CTFHS"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq57(name, align); +seqs.push_back(newSeq57); +name = "GQY1XT001CIUF3"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AC-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq58(name, align); +seqs.push_back(newSeq58); +name = "GQY1XT001BXD8S"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq59(name, align); +seqs.push_back(newSeq59); +name = "GQY1XT001AF1Q3"; +align = "A-C--T-G--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq60(name, align); +seqs.push_back(newSeq60); +name = "GQY1XT001C8QTK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq61(name, align); +seqs.push_back(newSeq61); +name = "GQY1XT001BVJNO"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq62(name, align); +seqs.push_back(newSeq62); +name = "GQY1XT001ETRS5"; +align = "A-T--T-G--GG-A-A-C-T-A-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---C----AG-G-----G-G-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq63(name, align); +seqs.push_back(newSeq63); +name = "GQY1XT001EQW3X"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq64(name, align); +seqs.push_back(newSeq64); +name = "GQY1XT001EJ7DU"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq65(name, align); +seqs.push_back(newSeq65); +name = "GQY1XT001DWRL7"; +align = "G-T--T-T--GA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GACC------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq66(name, align); +seqs.push_back(newSeq66); +name = "GQY1XT001D79TR"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq67(name, align); +seqs.push_back(newSeq67); +name = "GQY1XT001B6C9Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq68(name, align); +seqs.push_back(newSeq68); +name = "GQY1XT001EI480"; +align = "G-A--T-C--AA-A-A-C-T-G-C--AA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGATTGAA"; +Sequence newSeq69(name, align); +seqs.push_back(newSeq69); +name = "GQY1XT001EE24J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq70(name, align); +seqs.push_back(newSeq70); +name = "GQY1XT001EDBEC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq71(name, align); +seqs.push_back(newSeq71); +name = "GQY1XT001D47YY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq72(name, align); +seqs.push_back(newSeq72); +name = "GQY1XT001CNUHI"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq73(name, align); +seqs.push_back(newSeq73); +name = "GQY1XT001BH4P4"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----ATAA-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq74(name, align); +seqs.push_back(newSeq74); +name = "GQY1XT001AWI4W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq75(name, align); +seqs.push_back(newSeq75); +name = "GQY1XT001AMRXQ"; +align = "A-T--T-G--GA-A-A-C-T-G-C--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq76(name, align); +seqs.push_back(newSeq76); +name = "GQY1XT001EISNU"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq77(name, align); +seqs.push_back(newSeq77); +name = "GQY1XT001EDAPN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq78(name, align); +seqs.push_back(newSeq78); +name = "GQY1XT001E06HP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq79(name, align); +seqs.push_back(newSeq79); +name = "GQY1XT001DXX0D"; +align = "T-A--C-C--AA-A-A-C-T-G-T--TG-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-G--T-------ATC-GA-C----T-C-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq80(name, align); +seqs.push_back(newSeq80); +name = "GQY1XT001DK76L"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq81(name, align); +seqs.push_back(newSeq81); +name = "GQY1XT001DC2Z9"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq82(name, align); +seqs.push_back(newSeq82); +name = "GQY1XT001D8HIW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq83(name, align); +seqs.push_back(newSeq83); +name = "GQY1XT001CYGKE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq84(name, align); +seqs.push_back(newSeq84); +name = "GQY1XT001CTAEP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq85(name, align); +seqs.push_back(newSeq85); +name = "GQY1XT001CHFDU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq86(name, align); +seqs.push_back(newSeq86); +name = "GQY1XT001CAHA5"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq87(name, align); +seqs.push_back(newSeq87); +name = "GQY1XT001AU3JG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq88(name, align); +seqs.push_back(newSeq88); +name = "GQY1XT001A7KLW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq89(name, align); +seqs.push_back(newSeq89); +name = "GQY1XT001EVNLV"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq90(name, align); +seqs.push_back(newSeq90); +name = "GQY1XT001DZCL2"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AC-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq91(name, align); +seqs.push_back(newSeq91); +name = "GQY1XT001DUZOP"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-AA----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq92(name, align); +seqs.push_back(newSeq92); +name = "GQY1XT001DD4OA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGT-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--C---C----AA-A-----G-G-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq93(name, align); +seqs.push_back(newSeq93); +name = "GQY1XT001CLQ8T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq94(name, align); +seqs.push_back(newSeq94); +name = "GQY1XT001CI64O"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq95(name, align); +seqs.push_back(newSeq95); +name = "GQY1XT001C21E5"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G---------TTTC-GA-TG-----C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq96(name, align); +seqs.push_back(newSeq96); +name = "GQY1XT001BATAU"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq97(name, align); +seqs.push_back(newSeq97); +name = "GQY1XT001B2L2T"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq98(name, align); +seqs.push_back(newSeq98); +name = "GQY1XT001EKTYL"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq99(name, align); +seqs.push_back(newSeq99); +name = "GQY1XT001EH08T"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq100(name, align); +seqs.push_back(newSeq100); +name = "GQY1XT001EBAXG"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-C-G--C---C----AT-A-----G-G-C-G-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq101(name, align); +seqs.push_back(newSeq101); +name = "GQY1XT001DZX4H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq102(name, align); +seqs.push_back(newSeq102); +name = "GQY1XT001DX9HF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------GT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq103(name, align); +seqs.push_back(newSeq103); +name = "GQY1XT001D6C10"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq104(name, align); +seqs.push_back(newSeq104); +name = "GQY1XT001CU6G0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq105(name, align); +seqs.push_back(newSeq105); +name = "GQY1XT001CCIKR"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq106(name, align); +seqs.push_back(newSeq106); +name = "GQY1XT001C5FNH"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-T-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGAATGAA"; +Sequence newSeq107(name, align); +seqs.push_back(newSeq107); +name = "GQY1XT001BW5GI"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq108(name, align); +seqs.push_back(newSeq108); +name = "GQY1XT001BKKRF"; +align = "T-T--T-G--GA-A-A-CTT-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq109(name, align); +seqs.push_back(newSeq109); +name = "GQY1XT001BFDG3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq110(name, align); +seqs.push_back(newSeq110); +name = "GQY1XT001BA1UZ"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA-C-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq111(name, align); +seqs.push_back(newSeq111); +name = "GQY1XT001B7B4F"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq112(name, align); +seqs.push_back(newSeq112); +name = "GQY1XT001B3HER"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq113(name, align); +seqs.push_back(newSeq113); +name = "GQY1XT001AZUJZ"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C----G-G-G-G--A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq114(name, align); +seqs.push_back(newSeq114); +name = "GQY1XT001AVTPK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq115(name, align); +seqs.push_back(newSeq115); +name = "GQY1XT001AGP1J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq116(name, align); +seqs.push_back(newSeq116); +name = "GQY1XT001AESMQ"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq117(name, align); +seqs.push_back(newSeq117); +name = "GQY1XT001EXMDA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq118(name, align); +seqs.push_back(newSeq118); +name = "GQY1XT001EHLX1"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-G-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq119(name, align); +seqs.push_back(newSeq119); +name = "GQY1XT001EEPSH"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CG-C-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-C-C--C---C----AT-T-----G-G-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq120(name, align); +seqs.push_back(newSeq120); +name = "GQY1XT001E0WEO"; +align = "A-T--T-G--GA-A-A-C-T-G-G--CG-A-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-C-G--C---C----AC-G-----G-G-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq121(name, align); +seqs.push_back(newSeq121); +name = "GQY1XT001DV57S"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq122(name, align); +seqs.push_back(newSeq122); +name = "GQY1XT001DC1ON"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq123(name, align); +seqs.push_back(newSeq123); +name = "GQY1XT001D0EZV"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-C----A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq124(name, align); +seqs.push_back(newSeq124); +name = "GQY1XT001D07O6"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq125(name, align); +seqs.push_back(newSeq125); +name = "GQY1XT001CVG08"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq126(name, align); +seqs.push_back(newSeq126); +name = "GQY1XT001CTARO"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq127(name, align); +seqs.push_back(newSeq127); +name = "GQY1XT001CPLJN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq128(name, align); +seqs.push_back(newSeq128); +name = "GQY1XT001CB5IC"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq129(name, align); +seqs.push_back(newSeq129); +name = "GQY1XT001C281B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq130(name, align); +seqs.push_back(newSeq130); +name = "GQY1XT001BWUNQ"; +align = "G-T--T-T--GA-A-A-C-T-G-T--CG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq131(name, align); +seqs.push_back(newSeq131); +name = "GQY1XT001BUCXD"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq132(name, align); +seqs.push_back(newSeq132); +name = "GQY1XT001BQUGT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq133(name, align); +seqs.push_back(newSeq133); +name = "GQY1XT001BNNDP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq134(name, align); +seqs.push_back(newSeq134); +name = "GQY1XT001BN9CV"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq135(name, align); +seqs.push_back(newSeq135); +name = "GQY1XT001BL21S"; +align = "C-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq136(name, align); +seqs.push_back(newSeq136); +name = "GQY1XT001BD93X"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq137(name, align); +seqs.push_back(newSeq137); +name = "GQY1XT001B7SJ3"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq138(name, align); +seqs.push_back(newSeq138); +name = "GQY1XT001B79N5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq139(name, align); +seqs.push_back(newSeq139); +name = "GQY1XT001AXXKK"; +align = "A-T--A-T--AA-A-A-C-T-G-G--GG-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AC-G-A-A--G-G-G-A-G--TA------TTT-C-------A-C-T-C-T-C-T-G-T-G-T-C--GA--A-G-C-C-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq140(name, align); +seqs.push_back(newSeq140); +name = "GQY1XT001APMMG"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq141(name, align); +seqs.push_back(newSeq141); +name = "GQY1XT001AO6DL"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq142(name, align); +seqs.push_back(newSeq142); +name = "GQY1XT001AI1JK"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-TCG--G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq143(name, align); +seqs.push_back(newSeq143); +name = "GQY1XT001AE5A7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq144(name, align); +seqs.push_back(newSeq144); +name = "GQY1XT001A77FU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq145(name, align); +seqs.push_back(newSeq145); +name = "GQY1XT001EZU1F"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq146(name, align); +seqs.push_back(newSeq146); +name = "GQY1XT001EY0VF"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq147(name, align); +seqs.push_back(newSeq147); +name = "GQY1XT001EWITF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq148(name, align); +seqs.push_back(newSeq148); +name = "GQY1XT001EVEB5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--GC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq149(name, align); +seqs.push_back(newSeq149); +name = "GQY1XT001ERVUL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq150(name, align); +seqs.push_back(newSeq150); +name = "GQY1XT001EPR0H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq151(name, align); +seqs.push_back(newSeq151); +name = "GQY1XT001EPKYE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq152(name, align); +seqs.push_back(newSeq152); +name = "GQY1XT001EM0TN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq153(name, align); +seqs.push_back(newSeq153); +name = "GQY1XT001EHL10"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq154(name, align); +seqs.push_back(newSeq154); +name = "GQY1XT001EH8KN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq155(name, align); +seqs.push_back(newSeq155); +name = "GQY1XT001EFRAG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq156(name, align); +seqs.push_back(newSeq156); +name = "GQY1XT001EDZY7"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq157(name, align); +seqs.push_back(newSeq157); +name = "GQY1XT001E3LM5"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq158(name, align); +seqs.push_back(newSeq158); +name = "GQY1XT001E1X2E"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-C--C---T----AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq159(name, align); +seqs.push_back(newSeq159); +name = "GQY1XT001DWYDQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq160(name, align); +seqs.push_back(newSeq160); +name = "GQY1XT001DN9I6"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA--C-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq161(name, align); +seqs.push_back(newSeq161); +name = "GQY1XT001DJWFM"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq162(name, align); +seqs.push_back(newSeq162); +name = "GQY1XT001DHVO8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-A-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq163(name, align); +seqs.push_back(newSeq163); +name = "GQY1XT001DH4I4"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-C-G--C---C----AT-AG----G-C-G---T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq164(name, align); +seqs.push_back(newSeq164); +name = "GQY1XT001DADJM"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq165(name, align); +seqs.push_back(newSeq165); +name = "GQY1XT001D5TRF"; +align = "A-T--C-T--AA-A-A-C-T-G-T--TG-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGA-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AG-G-A-A--G-G-G-G-G--T-------ATA-A-------A-CTC-C-TCC-T-G-T-C-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq166(name, align); +seqs.push_back(newSeq166); +name = "GQY1XT001D2UY9"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq167(name, align); +seqs.push_back(newSeq167); +name = "GQY1XT001D1463"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G--A---C----TG-A-----C-C-C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq168(name, align); +seqs.push_back(newSeq168); +name = "GQY1XT001CWRV8"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-TGT-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G---G-G--G---C----A--T-----G-G-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq169(name, align); +seqs.push_back(newSeq169); +name = "GQY1XT001CVRVK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq170(name, align); +seqs.push_back(newSeq170); +name = "GQY1XT001CUC2B"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----G---C----AG-AG----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq171(name, align); +seqs.push_back(newSeq171); +name = "GQY1XT001CRFHI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq172(name, align); +seqs.push_back(newSeq172); +name = "GQY1XT001CQZ2F"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq173(name, align); +seqs.push_back(newSeq173); +name = "GQY1XT001CMO4M"; +align = "A-T--C-T--AA-A-A-C-T-G-G--TA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGA-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AG-G-A-A--G-G-G-G-G--T-------ATA-AA-C----T-C-C-T-C-C-T-G-T-C-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq174(name, align); +seqs.push_back(newSeq174); +name = "GQY1XT001CF4I5"; +align = "..T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq175(name, align); +seqs.push_back(newSeq175); +name = "GQY1XT001CEE8H"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCCG-G-GCC-G------------ATT-GAGG--------C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq176(name, align); +seqs.push_back(newSeq176); +name = "GQY1XT001CCAN6"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq177(name, align); +seqs.push_back(newSeq177); +name = "GQY1XT001C9X04"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C-------G-C-AA------G-A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq178(name, align); +seqs.push_back(newSeq178); +name = "GQY1XT001C9UYZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCCG-G-GCC-G------------ATT-GAGG--------C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq179(name, align); +seqs.push_back(newSeq179); +name = "GQY1XT001C610G"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq180(name, align); +seqs.push_back(newSeq180); +name = "GQY1XT001C4J0B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq181(name, align); +seqs.push_back(newSeq181); +name = "GQY1XT001C2OS7"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq182(name, align); +seqs.push_back(newSeq182); +name = "GQY1XT001C1WMY"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq183(name, align); +seqs.push_back(newSeq183); +name = "GQY1XT001BT9LZ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq184(name, align); +seqs.push_back(newSeq184); +name = "GQY1XT001BRS60"; +align = "C-T--T-G--CG-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GA-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq185(name, align); +seqs.push_back(newSeq185); +name = "GQY1XT001BLMSS"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA--A----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq186(name, align); +seqs.push_back(newSeq186); +name = "GQY1XT001BFEVN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq187(name, align); +seqs.push_back(newSeq187); +name = "GQY1XT001BCRZC"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq188(name, align); +seqs.push_back(newSeq188); +name = "GQY1XT001BBF5C"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq189(name, align); +seqs.push_back(newSeq189); +name = "GQY1XT001BAF72"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq190(name, align); +seqs.push_back(newSeq190); +name = "GQY1XT001B9Y3W"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---C----AA-A-----G-T-C-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq191(name, align); +seqs.push_back(newSeq191); +name = "GQY1XT001B9XO1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq192(name, align); +seqs.push_back(newSeq192); +name = "GQY1XT001B7NBQ"; +align = "G-C--C-G--GG-T-A-C-G-G-G--CG-G-G-C--T-T-G-A-G-T-G-C-GG-TA-G-G-G-G-A-G--AC-T-GG-A-ATT-C-C-C-G-GT-GT-A-A-CGGT-G-GAA--TG-T-GT-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-AA-T-G-GC-GAA-GG-CAG-G-TC-T--CTGG-GC-CG-T-T-ACT--GACG-CTG-A-GG--A-G-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-GA--TG-C-T-G-G-AT-G-T-G--G-G-G-C-C--C------TTTT-TC-C----G-G-G-T-C-C-T-G-T-G-T-C--GG--A-G-C-T-AA-C-G-C-G-T-TAA-G-CAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq193(name, align); +seqs.push_back(newSeq193); +name = "GQY1XT001B6B6X"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq194(name, align); +seqs.push_back(newSeq194); +name = "GQY1XT001B5FDE"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq195(name, align); +seqs.push_back(newSeq195); +name = "GQY1XT001B44ZE"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq196(name, align); +seqs.push_back(newSeq196); +name = "GQY1XT001B3RRH"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq197(name, align); +seqs.push_back(newSeq197); +name = "GQY1XT001B1FMW"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-C-G--C---C----AA-A-----G-G-C-G-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq198(name, align); +seqs.push_back(newSeq198); +name = "GQY1XT001B0S0G"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----C---C----CA-CA----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq199(name, align); +seqs.push_back(newSeq199); +name = "GQY1XT001AZ7TX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq200(name, align); +seqs.push_back(newSeq200); +name = "GQY1XT001AWGGS"; +align = "T-T--T-G--GG-G-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq201(name, align); +seqs.push_back(newSeq201); +name = "GQY1XT001AW13I"; +align = "T-C--T-G--GG-A-A-C-T-G-C--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq202(name, align); +seqs.push_back(newSeq202); +name = "GQY1XT001AVVL8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq203(name, align); +seqs.push_back(newSeq203); +name = "GQY1XT001AVDQY"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-T-G-G----G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq204(name, align); +seqs.push_back(newSeq204); +name = "GQY1XT001AP7WE"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq205(name, align); +seqs.push_back(newSeq205); +name = "GQY1XT001AN9R6"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq206(name, align); +seqs.push_back(newSeq206); +name = "GQY1XT001AMF1Z"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq207(name, align); +seqs.push_back(newSeq207); +name = "GQY1XT001AL3PU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq208(name, align); +seqs.push_back(newSeq208); +name = "GQY1XT001AIOL2"; +align = "G-T--T-C--TA-A-A-C-T-G-C--CG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq209(name, align); +seqs.push_back(newSeq209); +name = "GQY1XT001AFW79"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq210(name, align); +seqs.push_back(newSeq210); +name = "GQY1XT001AEZLH"; +align = "G-T--C-C--CG-A-A-C-T-G-G--GC-G-C-C--T-C-G-A-G-T-G-C-GG-TA-G-G-G-G-A-G--AT-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-A-TC-T--CTGG-GC-CG-C-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-GG--CG-C-T-A-G-GT-G-T-G--G-G-G-A-G-----------CG-AT-TG-----C-T-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq211(name, align); +seqs.push_back(newSeq211); +name = "GQY1XT001A7064"; +align = "A-T--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-G-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq212(name, align); +seqs.push_back(newSeq212); +name = "GQY1XT001A6CSK"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----A--GG----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq213(name, align); +seqs.push_back(newSeq213); +name = "GQY1XT001A5XOT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq214(name, align); +seqs.push_back(newSeq214); +name = "GQY1XT001A5J6A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq215(name, align); +seqs.push_back(newSeq215); +name = "GQY1XT001A0G36"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq216(name, align); +seqs.push_back(newSeq216); +name = "GQY1XT001EZZNX"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq217(name, align); +seqs.push_back(newSeq217); +name = "GQY1XT001EZL0F"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq218(name, align); +seqs.push_back(newSeq218); +name = "GQY1XT001EZ03E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-C-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq219(name, align); +seqs.push_back(newSeq219); +name = "GQY1XT001EYZ4F"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq220(name, align); +seqs.push_back(newSeq220); +name = "GQY1XT001EYTQI"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---A----TG-G-----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq221(name, align); +seqs.push_back(newSeq221); +name = "GQY1XT001EYNL7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CG-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq222(name, align); +seqs.push_back(newSeq222); +name = "GQY1XT001EYE6M"; +align = "G-T--T-C--AA-A-A-C-T-GTT--TT-T-T-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq223(name, align); +seqs.push_back(newSeq223); +name = "GQY1XT001EXZXC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-AG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-GCC-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq224(name, align); +seqs.push_back(newSeq224); +name = "GQY1XT001EXZLY"; +align = "C-G--T-T--GA-A-A-C-TAG-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-G-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC---CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq225(name, align); +seqs.push_back(newSeq225); +name = "GQY1XT001EXOOM"; +align = "A-T--C-T--AA-A-A-C-T-G-G--TA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGA-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AG-G-A-A--G-G-G-G-G--T-------ATA-A-------A-C-TCC-TCC-T-G-T-C-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq226(name, align); +seqs.push_back(newSeq226); +name = "GQY1XT001EX24Z"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAG-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq227(name, align); +seqs.push_back(newSeq227); +name = "GQY1XT001EWUBU"; +align = "C-G----T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq228(name, align); +seqs.push_back(newSeq228); +name = "GQY1XT001EWJBM"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G---GA-AG-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-GG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq229(name, align); +seqs.push_back(newSeq229); +name = "GQY1XT001EVP68"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-T-G-G----G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq230(name, align); +seqs.push_back(newSeq230); +name = "GQY1XT001EVO39"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CG-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq231(name, align); +seqs.push_back(newSeq231); +name = "GQY1XT001EUELE"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T----C-----G-G--C-------GA--TAA-----A-A-T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq232(name, align); +seqs.push_back(newSeq232); +name = "GQY1XT001EU3ZN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq233(name, align); +seqs.push_back(newSeq233); +name = "GQY1XT001ETY3N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-ACGT-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq234(name, align); +seqs.push_back(newSeq234); +name = "GQY1XT001ETV5R"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-GACG-AAA-G-CGG-TGGG-G--AGC-A-AA-CA-GG-ATTAGACTA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GACC------C-C-T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq235(name, align); +seqs.push_back(newSeq235); +name = "GQY1XT001ETSII"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq236(name, align); +seqs.push_back(newSeq236); +name = "GQY1XT001ET9BS"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq237(name, align); +seqs.push_back(newSeq237); +name = "GQY1XT001ESYFW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq238(name, align); +seqs.push_back(newSeq238); +name = "GQY1XT001ESY2M"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq239(name, align); +seqs.push_back(newSeq239); +name = "GQY1XT001ES0NY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq240(name, align); +seqs.push_back(newSeq240); +name = "GQY1XT001EQOBG"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq241(name, align); +seqs.push_back(newSeq241); +name = "GQY1XT001EQCKJ"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CG-C-G-C--T-G-G-A-G-T-G-C-CG-GA---G-G-G-T----AG-C-GG-A-ATT---C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-C-C--C---C----AT-T-----G-G-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq242(name, align); +seqs.push_back(newSeq242); +name = "GQY1XT001EQ1UK"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq243(name, align); +seqs.push_back(newSeq243); +name = "GQY1XT001EPWKA"; +align = "A-GT-T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-CTTT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-CGG------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq244(name, align); +seqs.push_back(newSeq244); +name = "GQY1XT001EPCM9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAG-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq245(name, align); +seqs.push_back(newSeq245); +name = "GQY1XT001EPA06"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq246(name, align); +seqs.push_back(newSeq246); +name = "GQY1XT001EOW0D"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq247(name, align); +seqs.push_back(newSeq247); +name = "GQY1XT001EMQDS"; +align = "A-T--T-G--GG-A-A-C-T-A-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G---G-G--G---C----TT-C-----G-G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq248(name, align); +seqs.push_back(newSeq248); +name = "GQY1XT001EMIPL"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-TCG--G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq249(name, align); +seqs.push_back(newSeq249); +name = "GQY1XT001EM91Y"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-AGG-GT-G-T-C--G-G-G-G-G--C---C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq250(name, align); +seqs.push_back(newSeq250); +name = "GQY1XT001EM3V4"; +align = "A-T--A-A--GA-A-A-C-T-G-T--CG-G-A-C--T-T-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C---A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GT--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--G-G-C-A-A--G---G----A--A---------T-T-G-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq251(name, align); +seqs.push_back(newSeq251); +name = "GQY1XT001ELV8X"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq252(name, align); +seqs.push_back(newSeq252); +name = "GQY1XT001ELC1A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq253(name, align); +seqs.push_back(newSeq253); +name = "GQY1XT001EL9FP"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq254(name, align); +seqs.push_back(newSeq254); +name = "GQY1XT001EKKMD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq255(name, align); +seqs.push_back(newSeq255); +name = "GQY1XT001EJY90"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq256(name, align); +seqs.push_back(newSeq256); +name = "GQY1XT001EJXCX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-A-C--T-C-G-A-G-A-G-G-GA-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CT-CC-T-G-TCT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-C-G-G-CT-G-C-C--C-G-G-G-C--C-------GAT-TGG-----G-G-T-C-T-G-G-G-T-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq257(name, align); +seqs.push_back(newSeq257); +name = "GQY1XT001EJVJ8"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq258(name, align); +seqs.push_back(newSeq258); +name = "GQY1XT001EJSIK"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--TG------GTC-ATC-----G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq259(name, align); +seqs.push_back(newSeq259); +name = "GQY1XT001EJC79"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq260(name, align); +seqs.push_back(newSeq260); +name = "GQY1XT001EJ8V5"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq261(name, align); +seqs.push_back(newSeq261); +name = "GQY1XT001EJ37H"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq262(name, align); +seqs.push_back(newSeq262); +name = "GQY1XT001EJ24C"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T---G----TC-A-----T-G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq263(name, align); +seqs.push_back(newSeq263); +name = "GQY1XT001EIQO8"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TT-A-A-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq264(name, align); +seqs.push_back(newSeq264); +name = "GQY1XT001EHRTI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq265(name, align); +seqs.push_back(newSeq265); +name = "GQY1XT001EHPLG"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AT-G-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-T-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq266(name, align); +seqs.push_back(newSeq266); +name = "GQY1XT001EHPDN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq267(name, align); +seqs.push_back(newSeq267); +name = "GQY1XT001EHHQV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G---A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-CCAA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq268(name, align); +seqs.push_back(newSeq268); +name = "GQY1XT001EH12T"; +align = "A-G--G-C--GA-T-A-C-G-G-G--CATA-A-C--T-T-G-A-G-T-A-C-TG-TA-G-G-G-G-T-A--AC-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-G-TT-A--CTGG-GC-AG-T-T-ACT--GACG-CTG-A-GG--A-G-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-G-TG-GG--CG-C-T-A-G-GT-G-T-G--A-G-G-G-T--C-------TTT-CA-C----G-A-C-T-T-T-C-G-T-G-C-C--GT--A-G-C-T-AA-C-G-C-A-T-TAA-G-CGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq269(name, align); +seqs.push_back(newSeq269); +name = "GQY1XT001EGK7D"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq270(name, align); +seqs.push_back(newSeq270); +name = "GQY1XT001EG5VE"; +align = "A-T--T-G--GA-A-A-C-T-G-C--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----GA-A-----G-C-C-C-T-T-T-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq271(name, align); +seqs.push_back(newSeq271); +name = "GQY1XT001EFRQ9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-CA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq272(name, align); +seqs.push_back(newSeq272); +name = "GQY1XT001EEEZ6"; +align = "C-G--C-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq273(name, align); +seqs.push_back(newSeq273); +name = "GQY1XT001EE22V"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-C-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-G-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq274(name, align); +seqs.push_back(newSeq274); +name = "GQY1XT001EDXUZ"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq275(name, align); +seqs.push_back(newSeq275); +name = "GQY1XT001EDVDZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-AAGTG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq276(name, align); +seqs.push_back(newSeq276); +name = "GQY1XT001ECOVZ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GGAA-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq277(name, align); +seqs.push_back(newSeq277); +name = "GQY1XT001EC1PC"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq278(name, align); +seqs.push_back(newSeq278); +name = "GQY1XT001EBNLI"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GT-T-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AT--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-T-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq279(name, align); +seqs.push_back(newSeq279); +name = "GQY1XT001EBKJQ"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--T---C----AA-GA------A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq280(name, align); +seqs.push_back(newSeq280); +name = "GQY1XT001EAXM4"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C--------GA-CG------G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq281(name, align); +seqs.push_back(newSeq281); +name = "GQY1XT001EADVY"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-T-G-A--G---C----AA-A-----G-C-T-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq282(name, align); +seqs.push_back(newSeq282); +name = "GQY1XT001EA7AT"; +align = "A-T--T-G--GG-A-A-C-T-A-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq283(name, align); +seqs.push_back(newSeq283); +name = "GQY1XT001E3176"; +align = "..T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--C-------AT--A-------A---G-A-C-TTCTG-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq284(name, align); +seqs.push_back(newSeq284); +name = "GQY1XT001E304Z"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TA-GA----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq285(name, align); +seqs.push_back(newSeq285); +name = "GQY1XT001E1O3T"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-G--A---C---ATA-A-----G-T-T-T-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq286(name, align); +seqs.push_back(newSeq286); +name = "GQY1XT001E076I"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq287(name, align); +seqs.push_back(newSeq287); +name = "GQY1XT001DZ8G2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-C-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq288(name, align); +seqs.push_back(newSeq288); +name = "GQY1XT001DZ55W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq289(name, align); +seqs.push_back(newSeq289); +name = "GQY1XT001DYZRF"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T---ATG-G-----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq290(name, align); +seqs.push_back(newSeq290); +name = "GQY1XT001DYT64"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--G-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq291(name, align); +seqs.push_back(newSeq291); +name = "GQY1XT001DYSF1"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-C-C----C---C----AT-TG----G-G-G-C---C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq292(name, align); +seqs.push_back(newSeq292); +name = "GQY1XT001DYRS9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq293(name, align); +seqs.push_back(newSeq293); +name = "GQY1XT001DYPI5"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-G-ACT--GACG-CTGAA-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq294(name, align); +seqs.push_back(newSeq294); +name = "GQY1XT001DYN2K"; +align = "T-A--C-C--AA-A-A-C-T-G-T--TG-G-A-C--T-C-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--AA-T-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-G--T-------ATC-GA-T----T-C-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq295(name, align); +seqs.push_back(newSeq295); +name = "GQY1XT001DYM8E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GAGG-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G---C--C-G-G-T-G--CG------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq296(name, align); +seqs.push_back(newSeq296); +name = "GQY1XT001DYDGQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq297(name, align); +seqs.push_back(newSeq297); +name = "GQY1XT001DXFSS"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq298(name, align); +seqs.push_back(newSeq298); +name = "GQY1XT001DXCE4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq299(name, align); +seqs.push_back(newSeq299); +name = "GQY1XT001DWX52"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-TGT-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C-----A-TG----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq300(name, align); +seqs.push_back(newSeq300); +name = "GQY1XT001DW3U5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT-GAACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GACC------C-C-T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-CAA-AGGTTGAA"; +Sequence newSeq301(name, align); +seqs.push_back(newSeq301); +name = "GQY1XT001DVWF7"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq302(name, align); +seqs.push_back(newSeq302); +name = "GQY1XT001DVSKQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AGA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq303(name, align); +seqs.push_back(newSeq303); +name = "GQY1XT001DVP26"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq304(name, align); +seqs.push_back(newSeq304); +name = "GQY1XT001DUPBA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq305(name, align); +seqs.push_back(newSeq305); +name = "GQY1XT001DUJQE"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC---AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G---G--A---C----GA-C-----A-G-T-G-C-C-C-G-G-T-G-C-C--GC--C-G---C-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq306(name, align); +seqs.push_back(newSeq306); +name = "GQY1XT001DUC9E"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-C--C---C----GA-A-----G-G-G-C-G-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq307(name, align); +seqs.push_back(newSeq307); +name = "GQY1XT001DU5IH"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-T-G-A--G---C----AA-A-----G-C-T-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq308(name, align); +seqs.push_back(newSeq308); +name = "GQY1XT001DU5G9"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq309(name, align); +seqs.push_back(newSeq309); +name = "GQY1XT001DTZQL"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-GCT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-A-G-G-----------GG-AA--------C-C-T-T-C-G-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq310(name, align); +seqs.push_back(newSeq310); +name = "GQY1XT001DTVYI"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-GG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq311(name, align); +seqs.push_back(newSeq311); +name = "GQY1XT001DTDNX"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq312(name, align); +seqs.push_back(newSeq312); +name = "GQY1XT001DT8QU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq313(name, align); +seqs.push_back(newSeq313); +name = "GQY1XT001DT73O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq314(name, align); +seqs.push_back(newSeq314); +name = "GQY1XT001DS1JN"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq315(name, align); +seqs.push_back(newSeq315); +name = "GQY1XT001DRPPW"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq316(name, align); +seqs.push_back(newSeq316); +name = "GQY1XT001DRHRE"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-GCC----------GAT-TG-AG-----G-T-C-T-G-G-G-T-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq317(name, align); +seqs.push_back(newSeq317); +name = "GQY1XT001DQU6D"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq318(name, align); +seqs.push_back(newSeq318); +name = "GQY1XT001DQOL0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-GCAAGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq319(name, align); +seqs.push_back(newSeq319); +name = "GQY1XT001DQH6M"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq320(name, align); +seqs.push_back(newSeq320); +name = "GQY1XT001DQB6Y"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq321(name, align); +seqs.push_back(newSeq321); +name = "GQY1XT001DQ6WQ"; +align = "C-G----T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq322(name, align); +seqs.push_back(newSeq322); +name = "GQY1XT001DPU46"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq323(name, align); +seqs.push_back(newSeq323); +name = "GQY1XT001DPMQQ"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C---AGA-G-----A-C-T-G-C-C-C-G-G-TGG-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq324(name, align); +seqs.push_back(newSeq324); +name = "GQY1XT001DPG56"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq325(name, align); +seqs.push_back(newSeq325); +name = "GQY1XT001DORYK"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq326(name, align); +seqs.push_back(newSeq326); +name = "GQY1XT001DOMBN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq327(name, align); +seqs.push_back(newSeq327); +name = "GQY1XT001DOITQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGAG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq328(name, align); +seqs.push_back(newSeq328); +name = "GQY1XT001DOESM"; +align = "ATT--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq329(name, align); +seqs.push_back(newSeq329); +name = "GQY1XT001DO480"; +align = "C-T--T-G--CG-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-TGG--GTG-G-G-T--A--------TG-GA------C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq330(name, align); +seqs.push_back(newSeq330); +name = "GQY1XT001DNKOZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq331(name, align); +seqs.push_back(newSeq331); +name = "GQY1XT001DMXE2"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G---CG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq332(name, align); +seqs.push_back(newSeq332); +name = "GQY1XT001DMKGX"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---CG---AC-A-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq333(name, align); +seqs.push_back(newSeq333); +name = "GQY1XT001DM11M"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq334(name, align); +seqs.push_back(newSeq334); +name = "GQY1XT001DLPOT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-AGAACGGT-G-AAA--TG-C-AT-AGA-AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG--AA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq335(name, align); +seqs.push_back(newSeq335); +name = "GQY1XT001DLMPA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq336(name, align); +seqs.push_back(newSeq336); +name = "GQY1XT001DL5J3"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq337(name, align); +seqs.push_back(newSeq337); +name = "GQY1XT001DL4BQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-G-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--A-G-G-C-C--C---T----AT-CC----G-G-G-G-C-T-T-A-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq338(name, align); +seqs.push_back(newSeq338); +name = "GQY1XT001DL47B"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-CG----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq339(name, align); +seqs.push_back(newSeq339); +name = "GQY1XT001DIUN5"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CC-A-A-C--T-T-G-A-A-T-G-C-AG-AA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-TC-TG-T-G-ATT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq340(name, align); +seqs.push_back(newSeq340); +name = "GQY1XT001DIS0K"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq341(name, align); +seqs.push_back(newSeq341); +name = "GQY1XT001DIM47"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AC-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-AGG-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-CGG-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA--C-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGGAGG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq342(name, align); +seqs.push_back(newSeq342); +name = "GQY1XT001DIDBJ"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---ACC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA-CGG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq343(name, align); +seqs.push_back(newSeq343); +name = "GQY1XT001DHWUM"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACC--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq344(name, align); +seqs.push_back(newSeq344); +name = "GQY1XT001DHOP9"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq345(name, align); +seqs.push_back(newSeq345); +name = "GQY1XT001DHLYL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-TGG-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATGGC-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-TGG--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq346(name, align); +seqs.push_back(newSeq346); +name = "GQY1XT001DH9DZ"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-GCGGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq347(name, align); +seqs.push_back(newSeq347); +name = "GQY1XT001DGVVI"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq348(name, align); +seqs.push_back(newSeq348); +name = "GQY1XT001DFIYO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GT-G-TCC--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq349(name, align); +seqs.push_back(newSeq349); +name = "GQY1XT001DFEAQ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq350(name, align); +seqs.push_back(newSeq350); +name = "GQY1XT001DFBY0"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C--G-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----A--AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq351(name, align); +seqs.push_back(newSeq351); +name = "GQY1XT001DETP8"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CA-G-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq352(name, align); +seqs.push_back(newSeq352); +name = "GQY1XT001DEOXH"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq353(name, align); +seqs.push_back(newSeq353); +name = "GQY1XT001DEN9A"; +align = "T-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G---CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-A--C---G----AC-A-----G-T-G-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGA-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq354(name, align); +seqs.push_back(newSeq354); +name = "GQY1XT001DEM5V"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-A-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-G----G---C-----A-GG----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq355(name, align); +seqs.push_back(newSeq355); +name = "GQY1XT001DEK0W"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G---C--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq356(name, align); +seqs.push_back(newSeq356); +name = "GQY1XT001DE7OZ"; +align = "C-G----T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq357(name, align); +seqs.push_back(newSeq357); +name = "GQY1XT001DDTEX"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-G-C-C-C----------GAT-TG-GG-----G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq358(name, align); +seqs.push_back(newSeq358); +name = "GQY1XT001DDAO6"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq359(name, align); +seqs.push_back(newSeq359); +name = "GQY1XT001DD70H"; +align = "A-T--T-T--C--A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-T-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-T-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq360(name, align); +seqs.push_back(newSeq360); +name = "GQY1XT001DD2SA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq361(name, align); +seqs.push_back(newSeq361); +name = "GQY1XT001DCJ7D"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-AGGTT-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C-----T-A----AG-C-A-T-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq362(name, align); +seqs.push_back(newSeq362); +name = "GQY1XT001DC7XN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq363(name, align); +seqs.push_back(newSeq363); +name = "GQY1XT001DBUC8"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CA-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--A---C----GA-CA----G-T-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq364(name, align); +seqs.push_back(newSeq364); +name = "GQY1XT001DBJBB"; +align = "A-T--T-G--GG-A-A-C-T-A-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq365(name, align); +seqs.push_back(newSeq365); +name = "GQY1XT001DB8H8"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CG-C-G-C--T-G-G-A-G-T-G-C-CG-GA---G-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq366(name, align); +seqs.push_back(newSeq366); +name = "GQY1XT001DAG24"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-C--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq367(name, align); +seqs.push_back(newSeq367); +name = "GQY1XT001D9K26"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq368(name, align); +seqs.push_back(newSeq368); +name = "GQY1XT001D8B8W"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq369(name, align); +seqs.push_back(newSeq369); +name = "GQY1XT001D8755"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq370(name, align); +seqs.push_back(newSeq370); +name = "GQY1XT001D7OHA"; +align = "T-C--T-G--GA-A-A-C-T-G-T-GTA-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq371(name, align); +seqs.push_back(newSeq371); +name = "GQY1XT001D7MZG"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAGC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq372(name, align); +seqs.push_back(newSeq372); +name = "GQY1XT001D7GR1"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq373(name, align); +seqs.push_back(newSeq373); +name = "GQY1XT001D6II6"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AC-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq374(name, align); +seqs.push_back(newSeq374); +name = "GQY1XT001D5V6Q"; +align = "C-G--T-G--GA-A-A-C-C-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-A-T--CG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-GA-T--CTGG-GC-TG-C-A-ACT--GACG-CTC-A-GT--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-T--G-G---G-G-----------TC-AA--------A-C-C-T-C-A-G-T-G-C-T--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq375(name, align); +seqs.push_back(newSeq375); +name = "GQY1XT001D53Q1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq376(name, align); +seqs.push_back(newSeq376); +name = "GQY1XT001D4YFG"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq377(name, align); +seqs.push_back(newSeq377); +name = "GQY1XT001D4IEY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq378(name, align); +seqs.push_back(newSeq378); +name = "GQY1XT001D4G6Q"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----GA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq379(name, align); +seqs.push_back(newSeq379); +name = "GQY1XT001D450X"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq380(name, align); +seqs.push_back(newSeq380); +name = "GQY1XT001D3T3X"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GC-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq381(name, align); +seqs.push_back(newSeq381); +name = "GQY1XT001D3IK7"; +align = "A-T--A-A--GA-A-A-C-T-G-T--CG-G-A-C--T-T-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GT--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-TCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--G-G-C-A-A-----------GG-AA--------T-T-G-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq382(name, align); +seqs.push_back(newSeq382); +name = "GQY1XT001D2RSU"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq383(name, align); +seqs.push_back(newSeq383); +name = "GQY1XT001D2QXP"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq384(name, align); +seqs.push_back(newSeq384); +name = "GQY1XT001D2C3B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq385(name, align); +seqs.push_back(newSeq385); +name = "GQY1XT001D1Z7R"; +align = "A-T--T-C--AA-A-A-C-T-G-A--CT-G-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-G-T--GG-T-GG-A-ATT-T-C-C-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-G-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-CA-C--CTGG-AC-TA-A-T-ACT--GACA-CTG-A-GG--T-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TC--AA-C-T-A-G-CC-G-T-T--G-G-A-A-G--C-------CTT-GA------G-C-T-T-T-T-A-G-T-G-G-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-TTG-ACC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTAAA"; +Sequence newSeq386(name, align); +seqs.push_back(newSeq386); +name = "GQY1XT001D12EL"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq387(name, align); +seqs.push_back(newSeq387); +name = "GQY1XT001D0XYA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq388(name, align); +seqs.push_back(newSeq388); +name = "GQY1XT001D0UJP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-TAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq389(name, align); +seqs.push_back(newSeq389); +name = "GQY1XT001D0MQQ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-GTG-G-G----------TAT-GG-AC-----C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq390(name, align); +seqs.push_back(newSeq390); +name = "GQY1XT001D0E4F"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---C----AT-AA----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq391(name, align); +seqs.push_back(newSeq391); +name = "GQY1XT001D03R0"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-TG-G-G-G-G----T---C-------GA------A-C-C-T---C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq392(name, align); +seqs.push_back(newSeq392); +name = "GQY1XT001D033P"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq393(name, align); +seqs.push_back(newSeq393); +name = "GQY1XT001CYUAQ"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq394(name, align); +seqs.push_back(newSeq394); +name = "GQY1XT001CYN5E"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq395(name, align); +seqs.push_back(newSeq395); +name = "GQY1XT001CXLAN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq396(name, align); +seqs.push_back(newSeq396); +name = "GQY1XT001CXJOX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq397(name, align); +seqs.push_back(newSeq397); +name = "GQY1XT001CXGFO"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G-----------GT-AA-GG-----C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq398(name, align); +seqs.push_back(newSeq398); +name = "GQY1XT001CX3HF"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq399(name, align); +seqs.push_back(newSeq399); +name = "GQY1XT001CWL63"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA-C-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq400(name, align); +seqs.push_back(newSeq400); +name = "GQY1XT001CWKMA"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq401(name, align); +seqs.push_back(newSeq401); +name = "GQY1XT001CW63U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCCG-G-G-C-C-G----------AAT-GG-GG-----C-C---T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq402(name, align); +seqs.push_back(newSeq402); +name = "GQY1XT001CW42X"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq403(name, align); +seqs.push_back(newSeq403); +name = "GQY1XT001CW2KE"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq404(name, align); +seqs.push_back(newSeq404); +name = "GQY1XT001CVWLK"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq405(name, align); +seqs.push_back(newSeq405); +name = "GQY1XT001CV50F"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq406(name, align); +seqs.push_back(newSeq406); +name = "GQY1XT001CUPYI"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq407(name, align); +seqs.push_back(newSeq407); +name = "GQY1XT001CUJ15"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq408(name, align); +seqs.push_back(newSeq408); +name = "GQY1XT001CTW9V"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq409(name, align); +seqs.push_back(newSeq409); +name = "GQY1XT001CTKIZ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-GT-T-C-G-CAAGAATGAA"; +Sequence newSeq410(name, align); +seqs.push_back(newSeq410); +name = "GQY1XT001CTF9O"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-GTG-G-G--T-------ATG-GA------C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq411(name, align); +seqs.push_back(newSeq411); +name = "GQY1XT001CT4ZD"; +align = "C-G--T-T--GA-A-A-C-C-T-G--GC-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGAG----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T---GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq412(name, align); +seqs.push_back(newSeq412); +name = "GQY1XT001CSW2S"; +align = "A-T--C-T--AA-A-A-C-T-G-G--TA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGA-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AG-G-A-A--G-G-G-G-G--T-------ATA-A-------A-C-TCC-TCC-T-G-T-C-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq413(name, align); +seqs.push_back(newSeq413); +name = "GQY1XT001CSRVL"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq414(name, align); +seqs.push_back(newSeq414); +name = "GQY1XT001CSIAG"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAG--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq415(name, align); +seqs.push_back(newSeq415); +name = "GQY1XT001CSF7O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-AG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq416(name, align); +seqs.push_back(newSeq416); +name = "GQY1XT001CRZOA"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq417(name, align); +seqs.push_back(newSeq417); +name = "GQY1XT001CRZFM"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq418(name, align); +seqs.push_back(newSeq418); +name = "GQY1XT001CRXBF"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-TGT-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq419(name, align); +seqs.push_back(newSeq419); +name = "GQY1XT001CQH75"; +align = "A-T--T-G--GA-A-G-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq420(name, align); +seqs.push_back(newSeq420); +name = "GQY1XT001CQAZN"; +align = "T-T--T-T--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq421(name, align); +seqs.push_back(newSeq421); +name = "GQY1XT001CPWEO"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq422(name, align); +seqs.push_back(newSeq422); +name = "GQY1XT001CPUCT"; +align = "C-G--T-T--G--A-A-C-T-G-G--GG-C-C-T--T-G-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-G-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq423(name, align); +seqs.push_back(newSeq423); +name = "GQY1XT001CPP9D"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq424(name, align); +seqs.push_back(newSeq424); +name = "GQY1XT001CPONM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CGA------GT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq425(name, align); +seqs.push_back(newSeq425); +name = "GQY1XT001CPKJY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq426(name, align); +seqs.push_back(newSeq426); +name = "GQY1XT001COH2D"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-ACGGT-G-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq427(name, align); +seqs.push_back(newSeq427); +name = "GQY1XT001COC8H"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-CCGGGG-G-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq428(name, align); +seqs.push_back(newSeq428); +name = "GQY1XT001CO725"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq429(name, align); +seqs.push_back(newSeq429); +name = "GQY1XT001CNM4Q"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G----------GCA-AA-GC-----C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq430(name, align); +seqs.push_back(newSeq430); +name = "GQY1XT001CMN1O"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq431(name, align); +seqs.push_back(newSeq431); +name = "GQY1XT001CMIJN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq432(name, align); +seqs.push_back(newSeq432); +name = "GQY1XT001CMEK1"; +align = "T-T--T-T--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-G-----G-C-T-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq433(name, align); +seqs.push_back(newSeq433); +name = "GQY1XT001CM3X9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-GTT-C--G-G-G-T-C--CAAA-----TG-AG------G-A-T-C-T-G-A-G-T-G-A-T--ACA-A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCCGACC-T-G-GGG-AG-TA--CG-CCGG-G-CAA-ACGGTGAA"; +Sequence newSeq434(name, align); +seqs.push_back(newSeq434); +name = "GQY1XT001CLRZ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G---T--C-C-G-G-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-GCGGTGAA"; +Sequence newSeq435(name, align); +seqs.push_back(newSeq435); +name = "GQY1XT001CLQMC"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq436(name, align); +seqs.push_back(newSeq436); +name = "GQY1XT001CKBTX"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-G-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq437(name, align); +seqs.push_back(newSeq437); +name = "GQY1XT001CJVHK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq438(name, align); +seqs.push_back(newSeq438); +name = "GQY1XT001CJKVR"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T--T-C-G-G-G----T---C----AA-AT----G-A-G-A-T-C-T-GAG-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq439(name, align); +seqs.push_back(newSeq439); +name = "GQY1XT001CJ8YZ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----G-A-C-TGC-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq440(name, align); +seqs.push_back(newSeq440); +name = "GQY1XT001CI4ZB"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq441(name, align); +seqs.push_back(newSeq441); +name = "GQY1XT001CGUEK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq442(name, align); +seqs.push_back(newSeq442); +name = "GQY1XT001CFUML"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G--T---C----GA-A-------C---C---T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq443(name, align); +seqs.push_back(newSeq443); +name = "GQY1XT001CFTIS"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T----C-------G--G-------GA---AA-----C-C-G-G-T---G-C-T---G----A---A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq444(name, align); +seqs.push_back(newSeq444); +name = "GQY1XT001CFB0Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq445(name, align); +seqs.push_back(newSeq445); +name = "GQY1XT001CF9D9"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CC-A-A-C--T-T-G-A-A-T-G-C-AG-AA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-TC-TG-T-G-ATT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GG--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq446(name, align); +seqs.push_back(newSeq446); +name = "GQY1XT001CF1VL"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCCG-G-GCC-G------------ATT-GAGG--------C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq447(name, align); +seqs.push_back(newSeq447); +name = "GQY1XT001CEOFM"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq448(name, align); +seqs.push_back(newSeq448); +name = "GQY1XT001CDKVO"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGAATGAA"; +Sequence newSeq449(name, align); +seqs.push_back(newSeq449); +name = "GQY1XT001CDDPN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq450(name, align); +seqs.push_back(newSeq450); +name = "GQY1XT001CD2TW"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq451(name, align); +seqs.push_back(newSeq451); +name = "GQY1XT001CCYF2"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA-C-----G-G-T-C-T-C-C-G-G-C-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGA-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq452(name, align); +seqs.push_back(newSeq452); +name = "GQY1XT001CCWT6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TAGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq453(name, align); +seqs.push_back(newSeq453); +name = "GQY1XT001CCR1M"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq454(name, align); +seqs.push_back(newSeq454); +name = "GQY1XT001CCI1I"; +align = "A-T--T-T-CAA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq455(name, align); +seqs.push_back(newSeq455); +name = "GQY1XT001CCGUZ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq456(name, align); +seqs.push_back(newSeq456); +name = "GQY1XT001CCE0U"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G----------GTA-AG-GC-----C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq457(name, align); +seqs.push_back(newSeq457); +name = "GQY1XT001CC1XY"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---G----CA-A-----A-GCC-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq458(name, align); +seqs.push_back(newSeq458); +name = "GQY1XT001CBVTY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C---T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq459(name, align); +seqs.push_back(newSeq459); +name = "GQY1XT001CBFFO"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq460(name, align); +seqs.push_back(newSeq460); +name = "GQY1XT001CB1V8"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA--C-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGAATGAA"; +Sequence newSeq461(name, align); +seqs.push_back(newSeq461); +name = "GQY1XT001CAQ0P"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq462(name, align); +seqs.push_back(newSeq462); +name = "GQY1XT001CAKTI"; +align = "A-C--A-T--AA-A-A-C-T-G-G--GA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-T-C-C-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-A-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AC-G-A-A--G-G-G-G-G--T-------ACA-A-------A-CTC-C-TCC-T-G-T-G-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq463(name, align); +seqs.push_back(newSeq463); +name = "GQY1XT001CAG4J"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GT-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-T----T---C----AA-GA------A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq464(name, align); +seqs.push_back(newSeq464); +name = "GQY1XT001C9TCH"; +align = "G-T--T-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AT-CC-C------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq465(name, align); +seqs.push_back(newSeq465); +name = "GQY1XT001C9SSG"; +align = "C-GT-T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-A-G--G-------CTT-CGA-------C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq466(name, align); +seqs.push_back(newSeq466); +name = "GQY1XT001C9NGS"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----GA--C----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq467(name, align); +seqs.push_back(newSeq467); +name = "GQY1XT001C9K3I"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq468(name, align); +seqs.push_back(newSeq468); +name = "GQY1XT001C8MW2"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq469(name, align); +seqs.push_back(newSeq469); +name = "GQY1XT001C8MIJ"; +align = "A-T--T-G--GG-A-A-C-T-A-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-AG--G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TTG---CTGG-AC-AG-TA--ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq470(name, align); +seqs.push_back(newSeq470); +name = "GQY1XT001C8MC2"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----GA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq471(name, align); +seqs.push_back(newSeq471); +name = "GQY1XT001C868Q"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---C----AT-AA----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq472(name, align); +seqs.push_back(newSeq472); +name = "GQY1XT001C7YPJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACAGTGAA"; +Sequence newSeq473(name, align); +seqs.push_back(newSeq473); +name = "GQY1XT001C7PTU"; +align = "A-T--C-T--AA-A-A-C-T-G-G--TA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq474(name, align); +seqs.push_back(newSeq474); +name = "GQY1XT001C7C75"; +align = "C-G--T-TG-GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-G-T--C-C-G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq475(name, align); +seqs.push_back(newSeq475); +name = "GQY1XT001C79Z4"; +align = "T-T--T-TG-GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq476(name, align); +seqs.push_back(newSeq476); +name = "GQY1XT001C718S"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G----------AGTCAAGGC---------T-C-TGC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq477(name, align); +seqs.push_back(newSeq477); +name = "GQY1XT001C6ZPG"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCCG-G-GCC-GA-----------ATG-GGG---------C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq478(name, align); +seqs.push_back(newSeq478); +name = "GQY1XT001C6YHZ"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-GAC-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq479(name, align); +seqs.push_back(newSeq479); +name = "GQY1XT001C6PIP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq480(name, align); +seqs.push_back(newSeq480); +name = "GQY1XT001C61JR"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-C-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq481(name, align); +seqs.push_back(newSeq481); +name = "GQY1XT001C5ZY5"; +align = "T-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G---CG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CA-G-G-G-C-A--C---G----AC-A-----G-T-G-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq482(name, align); +seqs.push_back(newSeq482); +name = "GQY1XT001C4V1I"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-C--C---C----GA-A-----G-G-G-C-G-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq483(name, align); +seqs.push_back(newSeq483); +name = "GQY1XT001C4G89"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq484(name, align); +seqs.push_back(newSeq484); +name = "GQY1XT001C4B5B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq485(name, align); +seqs.push_back(newSeq485); +name = "GQY1XT001C48GV"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq486(name, align); +seqs.push_back(newSeq486); +name = "GQY1XT001C2094"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq487(name, align); +seqs.push_back(newSeq487); +name = "GQY1XT001C1ENK"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T---AGA-A-----G-G-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq488(name, align); +seqs.push_back(newSeq488); +name = "GQY1XT001C1E97"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq489(name, align); +seqs.push_back(newSeq489); +name = "GQY1XT001C1E4P"; +align = "A-T--C-T--AA-A-A-C-T-G-G--TA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG---ATA-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGA-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AG-G-A-A--G-G-G-G-G---------TATA-AA-CT-----C-C-T-C-C-T-G-T-C-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq490(name, align); +seqs.push_back(newSeq490); +name = "GQY1XT001C1E0Z"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq491(name, align); +seqs.push_back(newSeq491); +name = "GQY1XT001C1C86"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq492(name, align); +seqs.push_back(newSeq492); +name = "GQY1XT001C0JEM"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq493(name, align); +seqs.push_back(newSeq493); +name = "GQY1XT001C0IZK"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-G-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-A----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq494(name, align); +seqs.push_back(newSeq494); +name = "GQY1XT001C08ZG"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-C-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq495(name, align); +seqs.push_back(newSeq495); +name = "GQY1XT001C02D6"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq496(name, align); +seqs.push_back(newSeq496); +name = "GQY1XT001BZGJ5"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq497(name, align); +seqs.push_back(newSeq497); +name = "GQY1XT001BZEEW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq498(name, align); +seqs.push_back(newSeq498); +name = "GQY1XT001BZ5JC"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGCA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq499(name, align); +seqs.push_back(newSeq499); +name = "GQY1XT001BYJE7"; +align = "C-G--T-T--G--A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq500(name, align); +seqs.push_back(newSeq500); +name = "GQY1XT001BYHUX"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq501(name, align); +seqs.push_back(newSeq501); +name = "GQY1XT001BY7S6"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq502(name, align); +seqs.push_back(newSeq502); +name = "GQY1XT001BXVN0"; +align = "A-A--A-A--GA-T-A-C-T-G-C--AA-A-G-C--T-A-G-A-G-T-A-T-GA-CA-G-A-G-G-C-A--AG-T-GG-A-ACT-A-C-A-T-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AA--AT-A-TA-T-G-T-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GT-CG-A-T-ACT--GACA-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-T--G-G-T--------------GAG-GA------------A-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq503(name, align); +seqs.push_back(newSeq503); +name = "GQY1XT001BXRJZ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-GC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq504(name, align); +seqs.push_back(newSeq504); +name = "GQY1XT001BXP1D"; +align = "C-T--T-G--CG-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AGAC-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T-CTTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GA-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGGAGG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq505(name, align); +seqs.push_back(newSeq505); +name = "GQY1XT001BX4K9"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GACC------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq506(name, align); +seqs.push_back(newSeq506); +name = "GQY1XT001BWQQE"; +align = "..T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----A--AA----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-T-A-AGAATGAA"; +Sequence newSeq507(name, align); +seqs.push_back(newSeq507); +name = "GQY1XT001BWFAY"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AG-A-A-C--T-A-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-C--C---C----GA-A-----G-G-G-C-G-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq508(name, align); +seqs.push_back(newSeq508); +name = "GQY1XT001BWD9D"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq509(name, align); +seqs.push_back(newSeq509); +name = "GQY1XT001BW2CO"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq510(name, align); +seqs.push_back(newSeq510); +name = "GQY1XT001BVPPE"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq511(name, align); +seqs.push_back(newSeq511); +name = "GQY1XT001BV13J"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq512(name, align); +seqs.push_back(newSeq512); +name = "GQY1XT001BV02F"; +align = "G-C--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-TG--C-A-CG-AAA-G-C-A-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CTG-T-AAAC-G-A-TG-AT--TG-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-CAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq513(name, align); +seqs.push_back(newSeq513); +name = "GQY1XT001BUOWZ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq514(name, align); +seqs.push_back(newSeq514); +name = "GQY1XT001BUI0U"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-TGG-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq515(name, align); +seqs.push_back(newSeq515); +name = "GQY1XT001BUBF2"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq516(name, align); +seqs.push_back(newSeq516); +name = "GQY1XT001BTIDT"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-T--T---A----AC-A-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq517(name, align); +seqs.push_back(newSeq517); +name = "GQY1XT001BSD18"; +align = "C-G----T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq518(name, align); +seqs.push_back(newSeq518); +name = "GQY1XT001BSBWI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq519(name, align); +seqs.push_back(newSeq519); +name = "GQY1XT001BS7HX"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq520(name, align); +seqs.push_back(newSeq520); +name = "GQY1XT001BRX1J"; +align = "T-T--T-G--GA-A-A-C-T-G-TA-TA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq521(name, align); +seqs.push_back(newSeq521); +name = "GQY1XT001BRNZN"; +align = "G-T--T-T--GA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq522(name, align); +seqs.push_back(newSeq522); +name = "GQY1XT001BRLCO"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AAA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-GTG-G-G----------TAT-GG-AC-----C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq523(name, align); +seqs.push_back(newSeq523); +name = "GQY1XT001BR887"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--A---C----TG-A-----C-C-C-C-A-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGATTGAA"; +Sequence newSeq524(name, align); +seqs.push_back(newSeq524); +name = "GQY1XT001BQRGU"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq525(name, align); +seqs.push_back(newSeq525); +name = "GQY1XT001BQN60"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-T-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq526(name, align); +seqs.push_back(newSeq526); +name = "GQY1XT001BQKS9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--C-------ATA-AGA-----C-T-T-C-T-G-T-G-C-C-G-----G--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq527(name, align); +seqs.push_back(newSeq527); +name = "GQY1XT001BQBAR"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq528(name, align); +seqs.push_back(newSeq528); +name = "GQY1XT001BQ2OX"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-TGA--GG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq529(name, align); +seqs.push_back(newSeq529); +name = "GQY1XT001BPBSW"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq530(name, align); +seqs.push_back(newSeq530); +name = "GQY1XT001BOO42"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq531(name, align); +seqs.push_back(newSeq531); +name = "GQY1XT001BOD0P"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq532(name, align); +seqs.push_back(newSeq532); +name = "GQY1XT001BNX1P"; +align = "T-T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-GTG-G-G--T-------ATG-GA------C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TG--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq533(name, align); +seqs.push_back(newSeq533); +name = "GQY1XT001BNKMD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AG-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq534(name, align); +seqs.push_back(newSeq534); +name = "GQY1XT001BNINJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq535(name, align); +seqs.push_back(newSeq535); +name = "GQY1XT001BNHEB"; +align = "A-T--T-C--AA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC---AAATA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T------C-G-G-G----------A----A--------A-C-----C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq536(name, align); +seqs.push_back(newSeq536); +name = "GQY1XT001BNEKF"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------CGT-CA--A-----G-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq537(name, align); +seqs.push_back(newSeq537); +name = "GQY1XT001BND9V"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq538(name, align); +seqs.push_back(newSeq538); +name = "GQY1XT001BMICD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq539(name, align); +seqs.push_back(newSeq539); +name = "GQY1XT001BMGFB"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-GAC-A-T-TAA-G-TAT-TCC-GCC-T-G-GGGAGG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq540(name, align); +seqs.push_back(newSeq540); +name = "GQY1XT001BM6X4"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGGCC-GT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq541(name, align); +seqs.push_back(newSeq541); +name = "GQY1XT001BLVK4"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-A-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq542(name, align); +seqs.push_back(newSeq542); +name = "GQY1XT001BLQ5R"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq543(name, align); +seqs.push_back(newSeq543); +name = "GQY1XT001BL97L"; +align = "T-C--T-G--GG-A-A-C-T-G-C--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--A---CG---AC-A-----G-T-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq544(name, align); +seqs.push_back(newSeq544); +name = "GQY1XT001BKNRP"; +align = "A-C--T-G-GAA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq545(name, align); +seqs.push_back(newSeq545); +name = "GQY1XT001BKMWZ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq546(name, align); +seqs.push_back(newSeq546); +name = "GQY1XT001BKLLZ"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq547(name, align); +seqs.push_back(newSeq547); +name = "GQY1XT001BKCW6"; +align = "A-A--C-C--AA-A-A-C-T-G-C--AA-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq548(name, align); +seqs.push_back(newSeq548); +name = "GQY1XT001BKB24"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT---C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq549(name, align); +seqs.push_back(newSeq549); +name = "GQY1XT001BK3EB"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq550(name, align); +seqs.push_back(newSeq550); +name = "GQY1XT001BJ3RN"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq551(name, align); +seqs.push_back(newSeq551); +name = "GQY1XT001BJ21N"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq552(name, align); +seqs.push_back(newSeq552); +name = "GQY1XT001BIYD4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq553(name, align); +seqs.push_back(newSeq553); +name = "GQY1XT001BIPG4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-CGG-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GTGG-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq554(name, align); +seqs.push_back(newSeq554); +name = "GQY1XT001BHUGP"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq555(name, align); +seqs.push_back(newSeq555); +name = "GQY1XT001BHQ7A"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq556(name, align); +seqs.push_back(newSeq556); +name = "GQY1XT001BH0TX"; +align = "C-G--T-T--GA-A-A-C-T-G----GT-T-T-C--T-T-G-A-G-C-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq557(name, align); +seqs.push_back(newSeq557); +name = "GQY1XT001BG7V4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq558(name, align); +seqs.push_back(newSeq558); +name = "GQY1XT001BFAJA"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-TCG--G-T-G-G-G----------TAT-GG-AC-----C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq559(name, align); +seqs.push_back(newSeq559); +name = "GQY1XT001BEFPN"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq560(name, align); +seqs.push_back(newSeq560); +name = "GQY1XT001BE0A4"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C----G-G---------------GA-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGAATGAA"; +Sequence newSeq561(name, align); +seqs.push_back(newSeq561); +name = "GQY1XT001BDJ3H"; +align = "T-T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A----G-G-G-T--C-------AT--A-------A---G-A-C-TTCTG-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGGAGG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq562(name, align); +seqs.push_back(newSeq562); +name = "GQY1XT001BDFRW"; +align = "T-A--C-C--AA-A-A-C-T-G-T--TG-G-A-C--T-T-G-A-G-T-G-C-A--GA-G-G-G-G-C-A--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G--T-------TTC-GA-T----G-C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-TCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq563(name, align); +seqs.push_back(newSeq563); +name = "GQY1XT001BD58P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GC-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq564(name, align); +seqs.push_back(newSeq564); +name = "GQY1XT001BD0XN"; +align = "G-T--T-T--GA-A-A-C-T-G-T--GA-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq565(name, align); +seqs.push_back(newSeq565); +name = "GQY1XT001BCZ7K"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq566(name, align); +seqs.push_back(newSeq566); +name = "GQY1XT001BCYTA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CGA------GT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq567(name, align); +seqs.push_back(newSeq567); +name = "GQY1XT001BCW2Z"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-TGG--GTG-G-GT-----------ATG-GACC--------C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq568(name, align); +seqs.push_back(newSeq568); +name = "GQY1XT001BCVHH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq569(name, align); +seqs.push_back(newSeq569); +name = "GQY1XT001BCT3V"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-T-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq570(name, align); +seqs.push_back(newSeq570); +name = "GQY1XT001BC8K4"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-GC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTT-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq571(name, align); +seqs.push_back(newSeq571); +name = "GQY1XT001BC02D"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTGG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq572(name, align); +seqs.push_back(newSeq572); +name = "GQY1XT001BBL1N"; +align = "C-T--T-T--GGAA-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AC-CT-G------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq573(name, align); +seqs.push_back(newSeq573); +name = "GQY1XT001BB0AL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq574(name, align); +seqs.push_back(newSeq574); +name = "GQY1XT001BAPQ9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C----T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACAGTGAA"; +Sequence newSeq575(name, align); +seqs.push_back(newSeq575); +name = "GQY1XT001BALRK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T----G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq576(name, align); +seqs.push_back(newSeq576); +name = "GQY1XT001BAB67"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CG-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq577(name, align); +seqs.push_back(newSeq577); +name = "GQY1XT001BAARR"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq578(name, align); +seqs.push_back(newSeq578); +name = "GQY1XT001B9E2H"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq579(name, align); +seqs.push_back(newSeq579); +name = "GQY1XT001B8XHJ"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq580(name, align); +seqs.push_back(newSeq580); +name = "GQY1XT001B8XAS"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-G-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq581(name, align); +seqs.push_back(newSeq581); +name = "GQY1XT001B8MR4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq582(name, align); +seqs.push_back(newSeq582); +name = "GQY1XT001B8G73"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-TCG--G-G-G-G-C--A---G----AG-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq583(name, align); +seqs.push_back(newSeq583); +name = "GQY1XT001B7WUW"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq584(name, align); +seqs.push_back(newSeq584); +name = "GQY1XT001B7WRH"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq585(name, align); +seqs.push_back(newSeq585); +name = "GQY1XT001B7WHA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq586(name, align); +seqs.push_back(newSeq586); +name = "GQY1XT001B7DYD"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq587(name, align); +seqs.push_back(newSeq587); +name = "GQY1XT001B6OQ6"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-C-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq588(name, align); +seqs.push_back(newSeq588); +name = "GQY1XT001B69EC"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GATA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq589(name, align); +seqs.push_back(newSeq589); +name = "GQY1XT001B60C3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq590(name, align); +seqs.push_back(newSeq590); +name = "GQY1XT001B5SFC"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C----T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq591(name, align); +seqs.push_back(newSeq591); +name = "GQY1XT001B5NV4"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq592(name, align); +seqs.push_back(newSeq592); +name = "GQY1XT001B3YIX"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-G-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq593(name, align); +seqs.push_back(newSeq593); +name = "GQY1XT001B3X0W"; +align = "C-G----T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq594(name, align); +seqs.push_back(newSeq594); +name = "GQY1XT001B3FMW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-AA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq595(name, align); +seqs.push_back(newSeq595); +name = "GQY1XT001B33L9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq596(name, align); +seqs.push_back(newSeq596); +name = "GQY1XT001B2NMD"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq597(name, align); +seqs.push_back(newSeq597); +name = "GQY1XT001B2LC1"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq598(name, align); +seqs.push_back(newSeq598); +name = "GQY1XT001B2BSQ"; +align = "A-A--A-A--GA-T-A-C-T-G-C--AA-A-G-C--T-A-G-A-G-T-A-T-GA-CA-G-A-G-G-C-A--AG-T-GG-A-ACT-A-C-A-T-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AA--AT-A-TA-T-G-T-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GT-CG-A-T-ACT--GACA-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T----T-G-G-T-G--A-------GAA-TCA---------G---T-----G-C-T-G----A---A-G-T-T-AA-C-G-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq599(name, align); +seqs.push_back(newSeq599); +name = "GQY1XT001B1NT0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq600(name, align); +seqs.push_back(newSeq600); +name = "GQY1XT001B1L47"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq601(name, align); +seqs.push_back(newSeq601); +name = "GQY1XT001B16R1"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TC-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq602(name, align); +seqs.push_back(newSeq602); +name = "GQY1XT001B15LZ"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CA-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-A----A---C----GA-CA----G-T-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq603(name, align); +seqs.push_back(newSeq603); +name = "GQY1XT001B0XDL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq604(name, align); +seqs.push_back(newSeq604); +name = "GQY1XT001B0RDE"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-G-T--C-G-G-G-G--G---C----AC-A-----C-G-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq605(name, align); +seqs.push_back(newSeq605); +name = "GQY1XT001B0PXR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq606(name, align); +seqs.push_back(newSeq606); +name = "GQY1XT001B0NDH"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G--T-------T-TCGA-T----G-C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq607(name, align); +seqs.push_back(newSeq607); +name = "GQY1XT001B0LOS"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq608(name, align); +seqs.push_back(newSeq608); +name = "GQY1XT001B05N5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-CT-T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq609(name, align); +seqs.push_back(newSeq609); +name = "GQY1XT001AZULT"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AA-A-T-C--T-T-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA--A----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq610(name, align); +seqs.push_back(newSeq610); +name = "GQY1XT001AZRLQ"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T----G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGGAGG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq611(name, align); +seqs.push_back(newSeq611); +name = "GQY1XT001AZHRG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq612(name, align); +seqs.push_back(newSeq612); +name = "GQY1XT001AZAPT"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq613(name, align); +seqs.push_back(newSeq613); +name = "GQY1XT001AYX7D"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq614(name, align); +seqs.push_back(newSeq614); +name = "GQY1XT001AYQ5Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq615(name, align); +seqs.push_back(newSeq615); +name = "GQY1XT001AXRGB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq616(name, align); +seqs.push_back(newSeq616); +name = "GQY1XT001AXG2N"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq617(name, align); +seqs.push_back(newSeq617); +name = "GQY1XT001AXDRE"; +align = "G-T--T-T--GA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G-AGGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-C------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq618(name, align); +seqs.push_back(newSeq618); +name = "GQY1XT001AWWIG"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G--T---T----TC-G-----A-T-G-C-T-A-CTA-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq619(name, align); +seqs.push_back(newSeq619); +name = "GQY1XT001AW8WD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq620(name, align); +seqs.push_back(newSeq620); +name = "GQY1XT001AW1W6"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq621(name, align); +seqs.push_back(newSeq621); +name = "GQY1XT001AW0BB"; +align = "..T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq622(name, align); +seqs.push_back(newSeq622); +name = "GQY1XT001AVY6F"; +align = "T-T--T-G--GA-A-A-C-T-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq623(name, align); +seqs.push_back(newSeq623); +name = "GQY1XT001AVXPI"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-A-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq624(name, align); +seqs.push_back(newSeq624); +name = "GQY1XT001AVW8R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq625(name, align); +seqs.push_back(newSeq625); +name = "GQY1XT001AVR1M"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq626(name, align); +seqs.push_back(newSeq626); +name = "GQY1XT001AV5CD"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T---GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq627(name, align); +seqs.push_back(newSeq627); +name = "GQY1XT001AUELS"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-A-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--A---C----AA-A-----G-T-A-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq628(name, align); +seqs.push_back(newSeq628); +name = "GQY1XT001ATVXJ"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C------G---G--G--------AA-A---------C-------C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq629(name, align); +seqs.push_back(newSeq629); +name = "GQY1XT001ATLSJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G--A---C-----T-GA----C-C-C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq630(name, align); +seqs.push_back(newSeq630); +name = "GQY1XT001ATF02"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-TCG--G-G-T-G-T--C---G----AA-G-----G-A-C-G-G-C-C-G-G-T-G-C-C--GC--A-G-C-G-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq631(name, align); +seqs.push_back(newSeq631); +name = "GQY1XT001ASOCW"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T---G-CA-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-T-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq632(name, align); +seqs.push_back(newSeq632); +name = "GQY1XT001ASDN9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq633(name, align); +seqs.push_back(newSeq633); +name = "GQY1XT001AS27U"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq634(name, align); +seqs.push_back(newSeq634); +name = "GQY1XT001ARTKK"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq635(name, align); +seqs.push_back(newSeq635); +name = "GQY1XT001ARRPS"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-T-G-G----G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq636(name, align); +seqs.push_back(newSeq636); +name = "GQY1XT001AREMS"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GC-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---T----AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq637(name, align); +seqs.push_back(newSeq637); +name = "GQY1XT001AQOQL"; +align = "C-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq638(name, align); +seqs.push_back(newSeq638); +name = "GQY1XT001AQKOI"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-G-C--T-A-G-G-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-C-----G-G-A-CGC-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq639(name, align); +seqs.push_back(newSeq639); +name = "GQY1XT001AQ7W0"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-C-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq640(name, align); +seqs.push_back(newSeq640); +name = "GQY1XT001APAHX"; +align = "C-A--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-CAA-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq641(name, align); +seqs.push_back(newSeq641); +name = "GQY1XT001AP4SY"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq642(name, align); +seqs.push_back(newSeq642); +name = "GQY1XT001AOQFM"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G---G-G---------GACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq643(name, align); +seqs.push_back(newSeq643); +name = "GQY1XT001AOPM0"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-G-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-T---G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq644(name, align); +seqs.push_back(newSeq644); +name = "GQY1XT001AOKG2"; +align = "T-T--T-G--GA-A-A-C-TGG-C--GG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-C--C---T----AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq645(name, align); +seqs.push_back(newSeq645); +name = "GQY1XT001AOB1H"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq646(name, align); +seqs.push_back(newSeq646); +name = "GQY1XT001AMBT9"; +align = "A-T--T-C--AA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------CGT-CA-A------G-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq647(name, align); +seqs.push_back(newSeq647); +name = "GQY1XT001AL3K5"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C----T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--CAA-CG-AAA-G-CGG-TGGG-T--ATC-G-AA-CA-GG-ATTAGACTA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-C-G-C-C--C-------GAG-TG------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq648(name, align); +seqs.push_back(newSeq648); +name = "GQY1XT001AKULV"; +align = "A-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T---ATG-G-----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq649(name, align); +seqs.push_back(newSeq649); +name = "GQY1XT001AKJCY"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-T-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-G--AC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq650(name, align); +seqs.push_back(newSeq650); +name = "GQY1XT001AJPC9"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-A-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AC-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGGAAG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq651(name, align); +seqs.push_back(newSeq651); +name = "GQY1XT001AJMR4"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-GTC-----------AT-AA--------G-A-CTT-C-T-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq652(name, align); +seqs.push_back(newSeq652); +name = "GQY1XT001AJ700"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq653(name, align); +seqs.push_back(newSeq653); +name = "GQY1XT001AJ20W"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G----------GTA-AG-GC-----C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq654(name, align); +seqs.push_back(newSeq654); +name = "GQY1XT001AIWYF"; +align = "T-A--G-C--TA-A-A-C-T-G-C--TA-A-G-C--T-C-G-A-G-A-C-C-GT-TA-G-G-G-G-T-A--AC-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-GAGT-G-AAA--TC-C-GT-AG--AT-A-TT-A-G-A-AG-GA--AC-A-CC-GA-T-A-GC-GTA-GG-CAG-G-TT-A--CTGG-GA-CG-G-T-TCT--GACA-CTA-A-GG--C-A-CG-AAA-G-C-G-TAGG-G--AGC-A-AA-CG-GG-ATTAG-ATA-CCCC-GGTA-GT-C-TA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-CA-G-T-T--T-T-G-G-G---------TATC-GA-CC-----C-C-T-A-G-A-G-T-T-G-C--GA--A-GC--T-AA-C-G-C-G-T-TAA-G-TAT-CCC-ACC-T-G-TGT-AG-TA--CG-AT-C-G-C-A-AGATTAAA"; +Sequence newSeq655(name, align); +seqs.push_back(newSeq655); +name = "GQY1XT001AILS4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-G-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq656(name, align); +seqs.push_back(newSeq656); +name = "GQY1XT001AIBN7"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq657(name, align); +seqs.push_back(newSeq657); +name = "GQY1XT001AI3O1"; +align = "T-T--T-G--GA-A-A-C-T-G----CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq658(name, align); +seqs.push_back(newSeq658); +name = "GQY1XT001AHO2K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAG-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq659(name, align); +seqs.push_back(newSeq659); +name = "GQY1XT001AGROC"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--GCG-G-G-G----------ACT-CG-AC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq660(name, align); +seqs.push_back(newSeq660); +name = "GQY1XT001AGKBN"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GT-T-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT---C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--GGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq661(name, align); +seqs.push_back(newSeq661); +name = "GQY1XT001AGG6W"; +align = "A-T--T-T-CAA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq662(name, align); +seqs.push_back(newSeq662); +name = "GQY1XT001AGC6C"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C----TA-AG----C-A-T-C-C-T---G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq663(name, align); +seqs.push_back(newSeq663); +name = "GQY1XT001AFXPL"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----G---C----AG-AG----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq664(name, align); +seqs.push_back(newSeq664); +name = "GQY1XT001AFXF7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq665(name, align); +seqs.push_back(newSeq665); +name = "GQY1XT001AFX9C"; +align = "T-T--T-G-GAA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq666(name, align); +seqs.push_back(newSeq666); +name = "GQY1XT001AEO5Y"; +align = "A-G----T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-CAT-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq667(name, align); +seqs.push_back(newSeq667); +name = "GQY1XT001AEDFI"; +align = "A-T--T-G--GA-A-A-C-T-G-G--CG-A-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-C-G--C---C----AC-G-----G-G-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGGATGAA"; +Sequence newSeq668(name, align); +seqs.push_back(newSeq668); +name = "GQY1XT001AD3AA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq669(name, align); +seqs.push_back(newSeq669); +name = "GQY1XT001A8ZAM"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-A-G-T-A-C-AG-GA-G-G-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--A--------CT-GA----C-C-C-C-A-T-C-C-G-T-G-C-C--GG--A-G-TTA--A-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-GCA-A-CG-GTGAA"; +Sequence newSeq670(name, align); +seqs.push_back(newSeq670); +name = "GQY1XT001A8Y8K"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--GCG-G-A-G--T---C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq671(name, align); +seqs.push_back(newSeq671); +name = "GQY1XT001A8WF3"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-A-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--A---C----AA-A-----G-T-A-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq672(name, align); +seqs.push_back(newSeq672); +name = "GQY1XT001A8T80"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GACC------C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq673(name, align); +seqs.push_back(newSeq673); +name = "GQY1XT001A8Q74"; +align = "A-T--T-G--GA-A-A-C-T-G-C--GG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G----G---C----AC-G-----G-C---C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq674(name, align); +seqs.push_back(newSeq674); +name = "GQY1XT001A8163"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A--------GA-AT------G-ATCCC-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq675(name, align); +seqs.push_back(newSeq675); +name = "GQY1XT001A6YXB"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-A--C---G----AC-A-----G-T-G-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq676(name, align); +seqs.push_back(newSeq676); +name = "GQY1XT001A5HGV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq677(name, align); +seqs.push_back(newSeq677); +name = "GQY1XT001A5DA8"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-C----A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq678(name, align); +seqs.push_back(newSeq678); +name = "GQY1XT001A4XYG"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq679(name, align); +seqs.push_back(newSeq679); +name = "GQY1XT001A4O71"; +align = "A-T--T-G--GA-A-A-C-T-G-C--GC-A-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq680(name, align); +seqs.push_back(newSeq680); +name = "GQY1XT001A3N9X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq681(name, align); +seqs.push_back(newSeq681); +name = "GQY1XT001A2ZIR"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AG----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq682(name, align); +seqs.push_back(newSeq682); +name = "GQY1XT001A2D1V"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----GA-A-----G-C-C-C-T-T-T-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq683(name, align); +seqs.push_back(newSeq683); +name = "GQY1XT001A26B8"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq684(name, align); +seqs.push_back(newSeq684); +name = "GQY1XT001A22CL"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCCG-G-GCC-GA-----------ATG-GGG---------C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq685(name, align); +seqs.push_back(newSeq685); +name = "GQY1XT001A20SJ"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G-------CAG-AG------G-C-C-CTT-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq686(name, align); +seqs.push_back(newSeq686); +name = "GQY1XT001A1OAD"; +align = "A-T--T-T--GGAA-A-C-T-G-T--AA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq687(name, align); +seqs.push_back(newSeq687); +name = "GQY1XT001A03SX"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAT-GAA-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-AGTAA-G-TAA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq688(name, align); +seqs.push_back(newSeq688); +name = "GQY1XT001A1T0J"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq689(name, align); +seqs.push_back(newSeq689); +name = "GQY1XT001CWZS4"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA-C-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq690(name, align); +seqs.push_back(newSeq690); +name = "GQY1XT001BF21Z"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq691(name, align); +seqs.push_back(newSeq691); +name = "GQY1XT001BSUXQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq692(name, align); +seqs.push_back(newSeq692); +name = "GQY1XT001DEAMX"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq693(name, align); +seqs.push_back(newSeq693); +name = "GQY1XT001BHQ8W"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq694(name, align); +seqs.push_back(newSeq694); +name = "GQY1XT001BH6RQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq695(name, align); +seqs.push_back(newSeq695); +name = "GQY1XT001EYPWE"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq696(name, align); +seqs.push_back(newSeq696); +name = "GQY1XT001DG39T"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq697(name, align); +seqs.push_back(newSeq697); +name = "GQY1XT001EYPCU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq698(name, align); +seqs.push_back(newSeq698); +name = "GQY1XT001EGKMY"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-T-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq699(name, align); +seqs.push_back(newSeq699); +name = "GQY1XT001C40V6"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq700(name, align); +seqs.push_back(newSeq700); +name = "GQY1XT001EHCCH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq701(name, align); +seqs.push_back(newSeq701); +name = "GQY1XT001DSKV4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq702(name, align); +seqs.push_back(newSeq702); +name = "GQY1XT001DBATA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq703(name, align); +seqs.push_back(newSeq703); +name = "GQY1XT001BMQ72"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq704(name, align); +seqs.push_back(newSeq704); +name = "GQY1XT001ENQS7"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq705(name, align); +seqs.push_back(newSeq705); +name = "GQY1XT001EDG3L"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq706(name, align); +seqs.push_back(newSeq706); +name = "GQY1XT001DW4OA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq707(name, align); +seqs.push_back(newSeq707); +name = "GQY1XT001D559F"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AC-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq708(name, align); +seqs.push_back(newSeq708); +name = "GQY1XT001C74CB"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C---AGA-G-----A-C-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq709(name, align); +seqs.push_back(newSeq709); +name = "GQY1XT001BYB9O"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq710(name, align); +seqs.push_back(newSeq710); +name = "GQY1XT001BGXA5"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq711(name, align); +seqs.push_back(newSeq711); +name = "GQY1XT001A69AD"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq712(name, align); +seqs.push_back(newSeq712); +name = "GQY1XT001EZ7ET"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq713(name, align); +seqs.push_back(newSeq713); +name = "GQY1XT001E1YNT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq714(name, align); +seqs.push_back(newSeq714); +name = "GQY1XT001DDQVF"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq715(name, align); +seqs.push_back(newSeq715); +name = "GQY1XT001CTZM0"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA--C-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq716(name, align); +seqs.push_back(newSeq716); +name = "GQY1XT001CCJT7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq717(name, align); +seqs.push_back(newSeq717); +name = "GQY1XT001C9JY3"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq718(name, align); +seqs.push_back(newSeq718); +name = "GQY1XT001C5F0S"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq719(name, align); +seqs.push_back(newSeq719); +name = "GQY1XT001BSRO2"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq720(name, align); +seqs.push_back(newSeq720); +name = "GQY1XT001B9VA2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq721(name, align); +seqs.push_back(newSeq721); +name = "GQY1XT001ARVHF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq722(name, align); +seqs.push_back(newSeq722); +name = "GQY1XT001AOG78"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq723(name, align); +seqs.push_back(newSeq723); +name = "GQY1XT001AEGP7"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq724(name, align); +seqs.push_back(newSeq724); +name = "GQY1XT001EX0ZP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq725(name, align); +seqs.push_back(newSeq725); +name = "GQY1XT001EPHS5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq726(name, align); +seqs.push_back(newSeq726); +name = "GQY1XT001EP1JC"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq727(name, align); +seqs.push_back(newSeq727); +name = "GQY1XT001EHN7S"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq728(name, align); +seqs.push_back(newSeq728); +name = "GQY1XT001EFUZQ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-TCG--G-G-G-G-G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq729(name, align); +seqs.push_back(newSeq729); +name = "GQY1XT001EDYY1"; +align = "C-G--T-T--GA-A-A-C-T-G-G---C-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq730(name, align); +seqs.push_back(newSeq730); +name = "GQY1XT001ECG24"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq731(name, align); +seqs.push_back(newSeq731); +name = "GQY1XT001EB301"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-TCCGGG-G-G-GA-----------ATG-GCC---------C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq732(name, align); +seqs.push_back(newSeq732); +name = "GQY1XT001DQWXH"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-TAG--G-G-G-G-T--A---T----CG-A-----T-T-C-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq733(name, align); +seqs.push_back(newSeq733); +name = "GQY1XT001DOMXB"; +align = "C-T--C-T--GA-T-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-TCC--G-G-T-T------------CTACGGG---------A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq734(name, align); +seqs.push_back(newSeq734); +name = "GQY1XT001DGEAP"; +align = "A-T--T-G--GA-A-A-C-T-G-C--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq735(name, align); +seqs.push_back(newSeq735); +name = "GQY1XT001CYFOT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-A-C--T-C-G-A-G-A-G-G-GA-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq736(name, align); +seqs.push_back(newSeq736); +name = "GQY1XT001CYCIB"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq737(name, align); +seqs.push_back(newSeq737); +name = "GQY1XT001CXUJD"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-C--T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq738(name, align); +seqs.push_back(newSeq738); +name = "GQY1XT001CXMNA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq739(name, align); +seqs.push_back(newSeq739); +name = "GQY1XT001CW602"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-C-----G-G-A-CGC-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq740(name, align); +seqs.push_back(newSeq740); +name = "GQY1XT001CVQSF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G-------CAG-GGG-----C-C-C-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq741(name, align); +seqs.push_back(newSeq741); +name = "GQY1XT001CMS04"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq742(name, align); +seqs.push_back(newSeq742); +name = "GQY1XT001CIFR7"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq743(name, align); +seqs.push_back(newSeq743); +name = "GQY1XT001CHEOP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq744(name, align); +seqs.push_back(newSeq744); +name = "GQY1XT001BUH2B"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq745(name, align); +seqs.push_back(newSeq745); +name = "GQY1XT001BTJY0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-A-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq746(name, align); +seqs.push_back(newSeq746); +name = "GQY1XT001BPBAW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-TCG--G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq747(name, align); +seqs.push_back(newSeq747); +name = "GQY1XT001BGSX9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq748(name, align); +seqs.push_back(newSeq748); +name = "GQY1XT001BGF0U"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq749(name, align); +seqs.push_back(newSeq749); +name = "GQY1XT001BDDJJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq750(name, align); +seqs.push_back(newSeq750); +name = "GQY1XT001BC7OS"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq751(name, align); +seqs.push_back(newSeq751); +name = "GQY1XT001B0P0B"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATT-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq752(name, align); +seqs.push_back(newSeq752); +name = "GQY1XT001AZ42D"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GGAA-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq753(name, align); +seqs.push_back(newSeq753); +name = "GQY1XT001AKTCW"; +align = "T-T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G----T---C----AT-A-----A-G-A-C-T-T-C-T-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq754(name, align); +seqs.push_back(newSeq754); +name = "GQY1XT001A0V8W"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq755(name, align); +seqs.push_back(newSeq755); +name = "GQY1XT001A058D"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq756(name, align); +seqs.push_back(newSeq756); +name = "GQY1XT001EZCXH"; +align = "A-C--T-T--GA-A-A-C-T-G-G--GT-G-T-C--T-T-G-A-G-G-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-CCT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CG-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G---------TATC-GA-CT-----C-C-T-T-C-T-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GT-C-G-C-A-AGAATGAA"; +Sequence newSeq757(name, align); +seqs.push_back(newSeq757); +name = "GQY1XT001EZ8GE"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATG-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq758(name, align); +seqs.push_back(newSeq758); +name = "GQY1XT001EYYS5"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq759(name, align); +seqs.push_back(newSeq759); +name = "GQY1XT001EYPAX"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-AGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq760(name, align); +seqs.push_back(newSeq760); +name = "GQY1XT001EYIV1"; +align = "G-T--T-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAT-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AT-CC-C------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq761(name, align); +seqs.push_back(newSeq761); +name = "GQY1XT001EXIVG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G---T--G-A-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq762(name, align); +seqs.push_back(newSeq762); +name = "GQY1XT001EXEU5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----GAG-GTC-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq763(name, align); +seqs.push_back(newSeq763); +name = "GQY1XT001EXAZ7"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq764(name, align); +seqs.push_back(newSeq764); +name = "GQY1XT001EWK0A"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq765(name, align); +seqs.push_back(newSeq765); +name = "GQY1XT001EW7MF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq766(name, align); +seqs.push_back(newSeq766); +name = "GQY1XT001EW2K2"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq767(name, align); +seqs.push_back(newSeq767); +name = "GQY1XT001EVP92"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq768(name, align); +seqs.push_back(newSeq768); +name = "GQY1XT001EVHL0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-T-C--G-G-G-G-C--A---C---ATA-A-----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq769(name, align); +seqs.push_back(newSeq769); +name = "GQY1XT001EV8AL"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq770(name, align); +seqs.push_back(newSeq770); +name = "GQY1XT001EV1R0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq771(name, align); +seqs.push_back(newSeq771); +name = "GQY1XT001EURY9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq772(name, align); +seqs.push_back(newSeq772); +name = "GQY1XT001EUIOC"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-GAA-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-GTGGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TTGG-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq773(name, align); +seqs.push_back(newSeq773); +name = "GQY1XT001EU9X6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq774(name, align); +seqs.push_back(newSeq774); +name = "GQY1XT001ETFKQ"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T----C-G-G-------------------G------A-A-A-C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq775(name, align); +seqs.push_back(newSeq775); +name = "GQY1XT001ETF05"; +align = "C-G--T-T--GA-A-A-C-G-G-G--TT-TTAGCC-T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq776(name, align); +seqs.push_back(newSeq776); +name = "GQY1XT001ETDKY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C----T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAG--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GATA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TC-G-G-C-A-ACGGTGAA"; +Sequence newSeq777(name, align); +seqs.push_back(newSeq777); +name = "GQY1XT001ET5SK"; +align = "A-T--T-G--GG-A-A-C-T-A-C-CGG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----ATAA-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq778(name, align); +seqs.push_back(newSeq778); +name = "GQY1XT001EQWOD"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq779(name, align); +seqs.push_back(newSeq779); +name = "GQY1XT001EQIV5"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-A-T-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--GCG-G-A-G--T---C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq780(name, align); +seqs.push_back(newSeq780); +name = "GQY1XT001EPE74"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq781(name, align); +seqs.push_back(newSeq781); +name = "GQY1XT001EP30T"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G--------CC-AAG-----GCC-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq782(name, align); +seqs.push_back(newSeq782); +name = "GQY1XT001ENZ1M"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq783(name, align); +seqs.push_back(newSeq783); +name = "GQY1XT001ENH1J"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq784(name, align); +seqs.push_back(newSeq784); +name = "GQY1XT001EMKVP"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGGATGAA"; +Sequence newSeq785(name, align); +seqs.push_back(newSeq785); +name = "GQY1XT001EMC11"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GC-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq786(name, align); +seqs.push_back(newSeq786); +name = "GQY1XT001EMATT"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C----TA-A-----G-C-A-T-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq787(name, align); +seqs.push_back(newSeq787); +name = "GQY1XT001EMAQQ"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq788(name, align); +seqs.push_back(newSeq788); +name = "GQY1XT001EM827"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-TA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G---A-T--A---T----CA-A-----G-G-A-T-A-TCC-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq789(name, align); +seqs.push_back(newSeq789); +name = "GQY1XT001EM7A3"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-C----A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq790(name, align); +seqs.push_back(newSeq790); +name = "GQY1XT001EM6RV"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq791(name, align); +seqs.push_back(newSeq791); +name = "GQY1XT001ELZVI"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-G-T--C-G-G-G-A--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq792(name, align); +seqs.push_back(newSeq792); +name = "GQY1XT001EKQHH"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq793(name, align); +seqs.push_back(newSeq793); +name = "GQY1XT001EKMAO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq794(name, align); +seqs.push_back(newSeq794); +name = "GQY1XT001EKHHJ"; +align = "A-T--T-G--GA-A-A-C-T-G-C--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq795(name, align); +seqs.push_back(newSeq795); +name = "GQY1XT001EJU1D"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAAGG-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GTGG-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-TGG-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq796(name, align); +seqs.push_back(newSeq796); +name = "GQY1XT001EJ2FF"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CG-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq797(name, align); +seqs.push_back(newSeq797); +name = "GQY1XT001EHO81"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAAGG-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CTGG-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq798(name, align); +seqs.push_back(newSeq798); +name = "GQY1XT001EGVLY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq799(name, align); +seqs.push_back(newSeq799); +name = "GQY1XT001EGSME"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----AA-G-------C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq800(name, align); +seqs.push_back(newSeq800); +name = "GQY1XT001EGAZT"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq801(name, align); +seqs.push_back(newSeq801); +name = "GQY1XT001EEXO8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C---G----AT-TG----G-G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq802(name, align); +seqs.push_back(newSeq802); +name = "GQY1XT001EENTR"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq803(name, align); +seqs.push_back(newSeq803); +name = "GQY1XT001EEIYW"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq804(name, align); +seqs.push_back(newSeq804); +name = "GQY1XT001EDTAQ"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-AGG-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-GAAA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq805(name, align); +seqs.push_back(newSeq805); +name = "GQY1XT001ECTBL"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq806(name, align); +seqs.push_back(newSeq806); +name = "GQY1XT001ECQ1R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq807(name, align); +seqs.push_back(newSeq807); +name = "GQY1XT001EA3NI"; +align = "C-G--T-T--G--A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-GCT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-GCGGTGAA"; +Sequence newSeq808(name, align); +seqs.push_back(newSeq808); +name = "GQY1XT001E3JUH"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-A-G-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq809(name, align); +seqs.push_back(newSeq809); +name = "GQY1XT001E2UEG"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq810(name, align); +seqs.push_back(newSeq810); +name = "GQY1XT001E10W9"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-GTCCGG-G-G-G-GA-----------ATG-GCC---------C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq811(name, align); +seqs.push_back(newSeq811); +name = "GQY1XT001E0KPB"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq812(name, align); +seqs.push_back(newSeq812); +name = "GQY1XT001E0777"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G---T--C-G-G-G-G--A-------GGA---A-----T-T-C-C-C-G---G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq813(name, align); +seqs.push_back(newSeq813); +name = "GQY1XT001E02IL"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq814(name, align); +seqs.push_back(newSeq814); +name = "GQY1XT001DZXJA"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-AC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq815(name, align); +seqs.push_back(newSeq815); +name = "GQY1XT001DZJKO"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq816(name, align); +seqs.push_back(newSeq816); +name = "GQY1XT001DYOCU"; +align = "T-T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--C-------AT--A-------A---G-A-C-TTCTG-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq817(name, align); +seqs.push_back(newSeq817); +name = "GQY1XT001DYGKE"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq818(name, align); +seqs.push_back(newSeq818); +name = "GQY1XT001DXUGT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq819(name, align); +seqs.push_back(newSeq819); +name = "GQY1XT001DX0D5"; +align = "A-T--A-A--GA-A-A-C-T-G-T--CG-G-A-C--T-T-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GT--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--G-G-C-A-A-----------GG-AA--------T-T-G-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGAATGAA"; +Sequence newSeq820(name, align); +seqs.push_back(newSeq820); +name = "GQY1XT001DX0CQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq821(name, align); +seqs.push_back(newSeq821); +name = "GQY1XT001DWG63"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq822(name, align); +seqs.push_back(newSeq822); +name = "GQY1XT001DW6TO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq823(name, align); +seqs.push_back(newSeq823); +name = "GQY1XT001DVLUO"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-A-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq824(name, align); +seqs.push_back(newSeq824); +name = "GQY1XT001DUDVJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq825(name, align); +seqs.push_back(newSeq825); +name = "GQY1XT001DT2OI"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-G---GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-G-AAGG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-GTG-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq826(name, align); +seqs.push_back(newSeq826); +name = "GQY1XT001DSPP3"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq827(name, align); +seqs.push_back(newSeq827); +name = "GQY1XT001DSLZ5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq828(name, align); +seqs.push_back(newSeq828); +name = "GQY1XT001DSCYV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq829(name, align); +seqs.push_back(newSeq829); +name = "GQY1XT001DRNKQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-TC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq830(name, align); +seqs.push_back(newSeq830); +name = "GQY1XT001DRMG3"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq831(name, align); +seqs.push_back(newSeq831); +name = "GQY1XT001DQ4UV"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-GCT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGCA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T---ATG-G-----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq832(name, align); +seqs.push_back(newSeq832); +name = "GQY1XT001DPYJ6"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq833(name, align); +seqs.push_back(newSeq833); +name = "GQY1XT001DOJ3N"; +align = "C-G--T-C--GT-A-G-A-C-T-G--GT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq834(name, align); +seqs.push_back(newSeq834); +name = "GQY1XT001DN337"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq835(name, align); +seqs.push_back(newSeq835); +name = "GQY1XT001DN193"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-G-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq836(name, align); +seqs.push_back(newSeq836); +name = "GQY1XT001DMV4N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq837(name, align); +seqs.push_back(newSeq837); +name = "GQY1XT001DM54B"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq838(name, align); +seqs.push_back(newSeq838); +name = "GQY1XT001DLXQL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-TCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq839(name, align); +seqs.push_back(newSeq839); +name = "GQY1XT001DLSU0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-GG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq840(name, align); +seqs.push_back(newSeq840); +name = "GQY1XT001DL380"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq841(name, align); +seqs.push_back(newSeq841); +name = "GQY1XT001DKSU0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq842(name, align); +seqs.push_back(newSeq842); +name = "GQY1XT001DKKIC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TC-G-G-C-A-ACGGTGAA"; +Sequence newSeq843(name, align); +seqs.push_back(newSeq843); +name = "GQY1XT001DKIM9"; +align = "T-C--T-G--GA-A-A-C-T-A-TG-GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---C----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq844(name, align); +seqs.push_back(newSeq844); +name = "GQY1XT001DK8XV"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq845(name, align); +seqs.push_back(newSeq845); +name = "GQY1XT001DJFPN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-A-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq846(name, align); +seqs.push_back(newSeq846); +name = "GQY1XT001DJ8OY"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-GCT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G------------TGCTAAG---------C-A-TCC-T-G-G-T-G-C-CGA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq847(name, align); +seqs.push_back(newSeq847); +name = "GQY1XT001DIGSI"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq848(name, align); +seqs.push_back(newSeq848); +name = "GQY1XT001DH9T4"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-C-----G-G-A-CGC-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq849(name, align); +seqs.push_back(newSeq849); +name = "GQY1XT001DH5LL"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq850(name, align); +seqs.push_back(newSeq850); +name = "GQY1XT001DGUTC"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C----G-G---------------GA-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq851(name, align); +seqs.push_back(newSeq851); +name = "GQY1XT001DGUJB"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----AT-A-----A-G-A-C-T-TCC-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq852(name, align); +seqs.push_back(newSeq852); +name = "GQY1XT001DGLDS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq853(name, align); +seqs.push_back(newSeq853); +name = "GQY1XT001DGLC1"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq854(name, align); +seqs.push_back(newSeq854); +name = "GQY1XT001DGL64"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq855(name, align); +seqs.push_back(newSeq855); +name = "GQY1XT001DG1MD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq856(name, align); +seqs.push_back(newSeq856); +name = "GQY1XT001DEX8G"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq857(name, align); +seqs.push_back(newSeq857); +name = "GQY1XT001DET7J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq858(name, align); +seqs.push_back(newSeq858); +name = "GQY1XT001DDWCI"; +align = "A-T--T-T--GG-A-A-C-TGG-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-C--T---C----AC-G-----G-G-C-G-C-T-C-G-G-TGG-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq859(name, align); +seqs.push_back(newSeq859); +name = "GQY1XT001DDLUW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GA-A-G-C--T-G-G-A-G-T---G-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq860(name, align); +seqs.push_back(newSeq860); +name = "GQY1XT001DDAN0"; +align = "A-T--T-G--G--A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-TCG--G-G-G-G-C--T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq861(name, align); +seqs.push_back(newSeq861); +name = "GQY1XT001DCR8A"; +align = "T-T--T-A--GA-A-A-C-T-G-G--CA-A-A-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-T-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-G-T--C-G-G---------------GC-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGTAGG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq862(name, align); +seqs.push_back(newSeq862); +name = "GQY1XT001DCR44"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GTGG-TCG--G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq863(name, align); +seqs.push_back(newSeq863); +name = "GQY1XT001DBLBC"; +align = "T-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq864(name, align); +seqs.push_back(newSeq864); +name = "GQY1XT001DB2I6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-TCCG-G-GTC-G------------AAT-GAG---------ATC-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq865(name, align); +seqs.push_back(newSeq865); +name = "GQY1XT001DABCU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq866(name, align); +seqs.push_back(newSeq866); +name = "GQY1XT001D9Y8F"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--G-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq867(name, align); +seqs.push_back(newSeq867); +name = "GQY1XT001D7Y5M"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq868(name, align); +seqs.push_back(newSeq868); +name = "GQY1XT001D7XCR"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-G-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq869(name, align); +seqs.push_back(newSeq869); +name = "GQY1XT001D7GRK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-GTT-GAA-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq870(name, align); +seqs.push_back(newSeq870); +name = "GQY1XT001D63XM"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq871(name, align); +seqs.push_back(newSeq871); +name = "GQY1XT001D50JU"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq872(name, align); +seqs.push_back(newSeq872); +name = "GQY1XT001D4JG2"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-G-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq873(name, align); +seqs.push_back(newSeq873); +name = "GQY1XT001D4C8Y"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T-------CAT-AAG-----A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq874(name, align); +seqs.push_back(newSeq874); +name = "GQY1XT001D37QE"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq875(name, align); +seqs.push_back(newSeq875); +name = "GQY1XT001D26Z9"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-C-G-G----G---C-----A-CG----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq876(name, align); +seqs.push_back(newSeq876); +name = "GQY1XT001D17ZG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq877(name, align); +seqs.push_back(newSeq877); +name = "GQY1XT001D0ZS2"; +align = "C-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G---CG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq878(name, align); +seqs.push_back(newSeq878); +name = "GQY1XT001D0XR5"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-GT---T---C----AA-GG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq879(name, align); +seqs.push_back(newSeq879); +name = "GQY1XT001CZEGP"; +align = "A-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-T-GG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A-----------GG-AA--------T-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq880(name, align); +seqs.push_back(newSeq880); +name = "GQY1XT001CYRVV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G--GGC-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G---T--C-C-G-G-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq881(name, align); +seqs.push_back(newSeq881); +name = "GQY1XT001CYQ63"; +align = "..T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G----------TC--GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq882(name, align); +seqs.push_back(newSeq882); +name = "GQY1XT001CXKEA"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq883(name, align); +seqs.push_back(newSeq883); +name = "GQY1XT001CX3Z9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq884(name, align); +seqs.push_back(newSeq884); +name = "GQY1XT001CWSQ6"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AC-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq885(name, align); +seqs.push_back(newSeq885); +name = "GQY1XT001CWP9L"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AA-CA----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq886(name, align); +seqs.push_back(newSeq886); +name = "GQY1XT001CWL08"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T---GGG-AG-TA--CG-CT-C-G-C-A-AGAATGAA"; +Sequence newSeq887(name, align); +seqs.push_back(newSeq887); +name = "GQY1XT001CW00N"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AAGG-----G-C-C-C-T-C-C-G-A-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq888(name, align); +seqs.push_back(newSeq888); +name = "GQY1XT001CVAAI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CG-------AT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq889(name, align); +seqs.push_back(newSeq889); +name = "GQY1XT001CU0DC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGGCCG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq890(name, align); +seqs.push_back(newSeq890); +name = "GQY1XT001CU014"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---C----AT-AA----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq891(name, align); +seqs.push_back(newSeq891); +name = "GQY1XT001CTH8F"; +align = "G-T--T-T--GA-A-A-C-T-G-T--GA-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq892(name, align); +seqs.push_back(newSeq892); +name = "GQY1XT001CT7MI"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq893(name, align); +seqs.push_back(newSeq893); +name = "GQY1XT001CT48N"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-C--A---C---ATA-A-----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq894(name, align); +seqs.push_back(newSeq894); +name = "GQY1XT001CSO5P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-C-G-C-C--C-------GAGTGGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq895(name, align); +seqs.push_back(newSeq895); +name = "GQY1XT001CS3JZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq896(name, align); +seqs.push_back(newSeq896); +name = "GQY1XT001CREXW"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG----G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq897(name, align); +seqs.push_back(newSeq897); +name = "GQY1XT001CQMXT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq898(name, align); +seqs.push_back(newSeq898); +name = "GQY1XT001CQJTC"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq899(name, align); +seqs.push_back(newSeq899); +name = "GQY1XT001CPDJX"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C----G-G-G-G--A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq900(name, align); +seqs.push_back(newSeq900); +name = "GQY1XT001COZPO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq901(name, align); +seqs.push_back(newSeq901); +name = "GQY1XT001COXEE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq902(name, align); +seqs.push_back(newSeq902); +name = "GQY1XT001CON9S"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq903(name, align); +seqs.push_back(newSeq903); +name = "GQY1XT001CNX9I"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq904(name, align); +seqs.push_back(newSeq904); +name = "GQY1XT001CNBJ0"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-AATTC-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G--G-------TCT-GAC-----C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq905(name, align); +seqs.push_back(newSeq905); +name = "GQY1XT001CLKQS"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-A-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq906(name, align); +seqs.push_back(newSeq906); +name = "GQY1XT001CKMKE"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-C-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-GCT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq907(name, align); +seqs.push_back(newSeq907); +name = "GQY1XT001CK4HA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-TGG-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq908(name, align); +seqs.push_back(newSeq908); +name = "GQY1XT001CJ4OA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq909(name, align); +seqs.push_back(newSeq909); +name = "GQY1XT001CJ4BB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq910(name, align); +seqs.push_back(newSeq910); +name = "GQY1XT001CIWFS"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq911(name, align); +seqs.push_back(newSeq911); +name = "GQY1XT001CIELQ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq912(name, align); +seqs.push_back(newSeq912); +name = "GQY1XT001CHZHN"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq913(name, align); +seqs.push_back(newSeq913); +name = "GQY1XT001CH6TQ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-G-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq914(name, align); +seqs.push_back(newSeq914); +name = "GQY1XT001CGX5Q"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq915(name, align); +seqs.push_back(newSeq915); +name = "GQY1XT001CGU9N"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq916(name, align); +seqs.push_back(newSeq916); +name = "GQY1XT001CGNFH"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq917(name, align); +seqs.push_back(newSeq917); +name = "GQY1XT001CFHVA"; +align = "A-T--A-A--CG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G-A-----------TA-AA--------A-T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq918(name, align); +seqs.push_back(newSeq918); +name = "GQY1XT001CEW6A"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq919(name, align); +seqs.push_back(newSeq919); +name = "GQY1XT001CETAI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-G-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--GC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq920(name, align); +seqs.push_back(newSeq920); +name = "GQY1XT001CDZ21"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C--------CT-AAGG----G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq921(name, align); +seqs.push_back(newSeq921); +name = "GQY1XT001CCZ3D"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-CGTT-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq922(name, align); +seqs.push_back(newSeq922); +name = "GQY1XT001CCX22"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq923(name, align); +seqs.push_back(newSeq923); +name = "GQY1XT001CCMSC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-C-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq924(name, align); +seqs.push_back(newSeq924); +name = "GQY1XT001CCDO5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A-------CGA-CAG-----T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq925(name, align); +seqs.push_back(newSeq925); +name = "GQY1XT001CC4MW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-ACTG-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq926(name, align); +seqs.push_back(newSeq926); +name = "GQY1XT001CBZH8"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq927(name, align); +seqs.push_back(newSeq927); +name = "GQY1XT001CBQMW"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq928(name, align); +seqs.push_back(newSeq928); +name = "GQY1XT001C9VTR"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G---T--C-G-C-G-G--A-------GTC-AAG-----G-C-T-C-T-GCG-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq929(name, align); +seqs.push_back(newSeq929); +name = "GQY1XT001C9PNP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq930(name, align); +seqs.push_back(newSeq930); +name = "GQY1XT001C9D54"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CC-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------TCT-GA--C-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq931(name, align); +seqs.push_back(newSeq931); +name = "GQY1XT001C94DS"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq932(name, align); +seqs.push_back(newSeq932); +name = "GQY1XT001C8DG5"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq933(name, align); +seqs.push_back(newSeq933); +name = "GQY1XT001C87G9"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-CGG-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq934(name, align); +seqs.push_back(newSeq934); +name = "GQY1XT001C85TH"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq935(name, align); +seqs.push_back(newSeq935); +name = "GQY1XT001C7K6X"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq936(name, align); +seqs.push_back(newSeq936); +name = "GQY1XT001C5X81"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----C---C----CA-CA----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq937(name, align); +seqs.push_back(newSeq937); +name = "GQY1XT001C5RKW"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq938(name, align); +seqs.push_back(newSeq938); +name = "GQY1XT001C5R30"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq939(name, align); +seqs.push_back(newSeq939); +name = "GQY1XT001C5OQA"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-A-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq940(name, align); +seqs.push_back(newSeq940); +name = "GQY1XT001C5OF6"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A----------CCC-AAGGG-----T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq941(name, align); +seqs.push_back(newSeq941); +name = "GQY1XT001C5JUW"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq942(name, align); +seqs.push_back(newSeq942); +name = "GQY1XT001C5GUL"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq943(name, align); +seqs.push_back(newSeq943); +name = "GQY1XT001C59AH"; +align = "T-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-CG----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-A-G-C-A-ACGGTGAA"; +Sequence newSeq944(name, align); +seqs.push_back(newSeq944); +name = "GQY1XT001C3K31"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq945(name, align); +seqs.push_back(newSeq945); +name = "GQY1XT001C3J66"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq946(name, align); +seqs.push_back(newSeq946); +name = "GQY1XT001C2HG4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGCGAA"; +Sequence newSeq947(name, align); +seqs.push_back(newSeq947); +name = "GQY1XT001C2GSX"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq948(name, align); +seqs.push_back(newSeq948); +name = "GQY1XT001C1ZEV"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq949(name, align); +seqs.push_back(newSeq949); +name = "GQY1XT001C1QWT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq950(name, align); +seqs.push_back(newSeq950); +name = "GQY1XT001C136W"; +align = "T-T--T-G--G--A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq951(name, align); +seqs.push_back(newSeq951); +name = "GQY1XT001C0R97"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq952(name, align); +seqs.push_back(newSeq952); +name = "GQY1XT001C0JOK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--AG------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACAGTGAA"; +Sequence newSeq953(name, align); +seqs.push_back(newSeq953); +name = "GQY1XT001C09ZC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq954(name, align); +seqs.push_back(newSeq954); +name = "GQY1XT001C07XU"; +align = "C-G--T-T--GA-A-A-C-T-T-G--GT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq955(name, align); +seqs.push_back(newSeq955); +name = "GQY1XT001BZ1JQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq956(name, align); +seqs.push_back(newSeq956); +name = "GQY1XT001BXU25"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq957(name, align); +seqs.push_back(newSeq957); +name = "GQY1XT001BXOYU"; +align = "C-G--C-A--TG-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC--AA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq958(name, align); +seqs.push_back(newSeq958); +name = "GQY1XT001BWXPR"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq959(name, align); +seqs.push_back(newSeq959); +name = "GQY1XT001BWNL7"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq960(name, align); +seqs.push_back(newSeq960); +name = "GQY1XT001BV5DU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq961(name, align); +seqs.push_back(newSeq961); +name = "GQY1XT001BTPWD"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G------C----CA-AA----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq962(name, align); +seqs.push_back(newSeq962); +name = "GQY1XT001BSM39"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq963(name, align); +seqs.push_back(newSeq963); +name = "GQY1XT001BSIYP"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T---G-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-G--C---C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq964(name, align); +seqs.push_back(newSeq964); +name = "GQY1XT001BR1RG"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TT-A-A-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq965(name, align); +seqs.push_back(newSeq965); +name = "GQY1XT001BQOC4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq966(name, align); +seqs.push_back(newSeq966); +name = "GQY1XT001BQ6PL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-A-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq967(name, align); +seqs.push_back(newSeq967); +name = "GQY1XT001BQ5P4"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq968(name, align); +seqs.push_back(newSeq968); +name = "GQY1XT001BPLGT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq969(name, align); +seqs.push_back(newSeq969); +name = "GQY1XT001BPJSB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq970(name, align); +seqs.push_back(newSeq970); +name = "GQY1XT001BORQD"; +align = "ATT--T-T--GA-A-A-C-T-GTT--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGAATGAA"; +Sequence newSeq971(name, align); +seqs.push_back(newSeq971); +name = "GQY1XT001BODJS"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-TC-AG-T-G-GC-GGA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-G----A---C-----A-TA----G-T-T-T-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq972(name, align); +seqs.push_back(newSeq972); +name = "GQY1XT001BODBA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq973(name, align); +seqs.push_back(newSeq973); +name = "GQY1XT001BOBWZ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-TCG--G-G-G-G-G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq974(name, align); +seqs.push_back(newSeq974); +name = "GQY1XT001BNP5A"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq975(name, align); +seqs.push_back(newSeq975); +name = "GQY1XT001BLW7T"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AG-A-A-C--T-A-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-CC-T-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TA--TCCCACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq976(name, align); +seqs.push_back(newSeq976); +name = "GQY1XT001BLL0X"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq977(name, align); +seqs.push_back(newSeq977); +name = "GQY1XT001BLGDV"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A---G-T----GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-AA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq978(name, align); +seqs.push_back(newSeq978); +name = "GQY1XT001BLF40"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-TCG--G-G-G-G-G----------CCA-AG-GC-----C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq979(name, align); +seqs.push_back(newSeq979); +name = "GQY1XT001BLEJH"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq980(name, align); +seqs.push_back(newSeq980); +name = "GQY1XT001BKFDJ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq981(name, align); +seqs.push_back(newSeq981); +name = "GQY1XT001BJGWI"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq982(name, align); +seqs.push_back(newSeq982); +name = "GQY1XT001BIZXC"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq983(name, align); +seqs.push_back(newSeq983); +name = "GQY1XT001BIRIE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--TGCCCCG-----------AGTG-AGG---------G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq984(name, align); +seqs.push_back(newSeq984); +name = "GQY1XT001BIC49"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq985(name, align); +seqs.push_back(newSeq985); +name = "GQY1XT001BI4NP"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq986(name, align); +seqs.push_back(newSeq986); +name = "GQY1XT001BHX1B"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-A-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq987(name, align); +seqs.push_back(newSeq987); +name = "GQY1XT001BHSU0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq988(name, align); +seqs.push_back(newSeq988); +name = "GQY1XT001BH3PR"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-GTG-G-G-T--A--------TG-GA------C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq989(name, align); +seqs.push_back(newSeq989); +name = "GQY1XT001BGZRP"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GC-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq990(name, align); +seqs.push_back(newSeq990); +name = "GQY1XT001BGXQP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-T-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAG"; +Sequence newSeq991(name, align); +seqs.push_back(newSeq991); +name = "GQY1XT001BFXWS"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq992(name, align); +seqs.push_back(newSeq992); +name = "GQY1XT001BFWOA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GT-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq993(name, align); +seqs.push_back(newSeq993); +name = "GQY1XT001BF5QA"; +align = "A-C--T-G--AG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-G-C-A--T---CG---A--A----GG-A-T-G-G-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq994(name, align); +seqs.push_back(newSeq994); +name = "GQY1XT001BDRKB"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq995(name, align); +seqs.push_back(newSeq995); +name = "GQY1XT001BCL2I"; +align = "A-T--T-T--GA-A-A-C-T-GTT--TT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq996(name, align); +seqs.push_back(newSeq996); +name = "GQY1XT001BCCY2"; +align = "C-G--T-T--GA-A-A-C-T---G--AC-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-GA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq997(name, align); +seqs.push_back(newSeq997); +name = "GQY1XT001BC5ZU"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----AT-AA----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq998(name, align); +seqs.push_back(newSeq998); +name = "GQY1XT001BBVJO"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq999(name, align); +seqs.push_back(newSeq999); +name = "GQY1XT001BBFG5"; +align = "C-GT-T-T--GA-A-ACC-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TTCCG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1000(name, align); +seqs.push_back(newSeq1000); +name = "GQY1XT001BAG3V"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G--------CC-AA------G-GCCCT-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1001(name, align); +seqs.push_back(newSeq1001); +name = "GQY1XT001B9TIV"; +align = "A-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--------GCTAG-AG--------C-C-CTT-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1002(name, align); +seqs.push_back(newSeq1002); +name = "GQY1XT001B9I8C"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1003(name, align); +seqs.push_back(newSeq1003); +name = "GQY1XT001B9GME"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-G-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-GTT-A-GTAGTT---------------TCGATG-----------C-TACTA-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq1004(name, align); +seqs.push_back(newSeq1004); +name = "GQY1XT001B7GQG"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-CG----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1005(name, align); +seqs.push_back(newSeq1005); +name = "GQY1XT001B6YL8"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1006(name, align); +seqs.push_back(newSeq1006); +name = "GQY1XT001B6W23"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A---G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1007(name, align); +seqs.push_back(newSeq1007); +name = "GQY1XT001B6E9B"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1008(name, align); +seqs.push_back(newSeq1008); +name = "GQY1XT001B5BKI"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-C-G-G----G---C-----A-GG----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1009(name, align); +seqs.push_back(newSeq1009); +name = "GQY1XT001B4UWB"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-G-A-G-GT-G-T-C--G-G---G-A--G---G----CA-GA----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1010(name, align); +seqs.push_back(newSeq1010); +name = "GQY1XT001B4M8E"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AC-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1011(name, align); +seqs.push_back(newSeq1011); +name = "GQY1XT001B4J0M"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-GCCC-G---T----AAGG-----G-G-C-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1012(name, align); +seqs.push_back(newSeq1012); +name = "GQY1XT001B4H50"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-TAA-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G---G-G--G---T----AA-G-----G-C---C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1013(name, align); +seqs.push_back(newSeq1013); +name = "GQY1XT001B3PMW"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1014(name, align); +seqs.push_back(newSeq1014); +name = "GQY1XT001B32FR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATG-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1015(name, align); +seqs.push_back(newSeq1015); +name = "GQY1XT001B2GF9"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C--G-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1016(name, align); +seqs.push_back(newSeq1016); +name = "GQY1XT001AZX5J"; +align = "G-T--T-C--AA-A-A-C-T-G-A--TA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1017(name, align); +seqs.push_back(newSeq1017); +name = "GQY1XT001AZW3I"; +align = "A-T--T-C--AA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------CGT-CA-A------G-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1018(name, align); +seqs.push_back(newSeq1018); +name = "GQY1XT001AZ0Q5"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T----G-A-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1019(name, align); +seqs.push_back(newSeq1019); +name = "GQY1XT001AYX5B"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1020(name, align); +seqs.push_back(newSeq1020); +name = "GQY1XT001AXGVN"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----CA-AG----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1021(name, align); +seqs.push_back(newSeq1021); +name = "GQY1XT001AXFH3"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-GTT-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-GG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1022(name, align); +seqs.push_back(newSeq1022); +name = "GQY1XT001AWXTO"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----GA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1023(name, align); +seqs.push_back(newSeq1023); +name = "GQY1XT001AWQD2"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1024(name, align); +seqs.push_back(newSeq1024); +name = "GQY1XT001AWCF3"; +align = "C-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-C--G-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1025(name, align); +seqs.push_back(newSeq1025); +name = "GQY1XT001AW9VM"; +align = "A-T--T-G-GAA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1026(name, align); +seqs.push_back(newSeq1026); +name = "GQY1XT001AVNVM"; +align = "G-T--T-C--CG-G-A-C-TGG-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T--GGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AT-CC-C------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq1027(name, align); +seqs.push_back(newSeq1027); +name = "GQY1XT001AV50O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1028(name, align); +seqs.push_back(newSeq1028); +name = "GQY1XT001AV0AG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1029(name, align); +seqs.push_back(newSeq1029); +name = "GQY1XT001AUH91"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1030(name, align); +seqs.push_back(newSeq1030); +name = "GQY1XT001AUEHA"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1031(name, align); +seqs.push_back(newSeq1031); +name = "GQY1XT001ASTYP"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-CTG-C-G-T-G-C-C--GG--A-G-T-T-AA-C-G-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1032(name, align); +seqs.push_back(newSeq1032); +name = "GQY1XT001AS6OS"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---C----GA-CA----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1033(name, align); +seqs.push_back(newSeq1033); +name = "GQY1XT001ARMXF"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-GCA--C---A----TA-AG----T-G-G-C-C---C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-ACT-TAA-G-TAT-TCC-ACC-T-G-GGA-GG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1034(name, align); +seqs.push_back(newSeq1034); +name = "GQY1XT001AQXRW"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CCC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CTGG-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1035(name, align); +seqs.push_back(newSeq1035); +name = "GQY1XT001AQWB0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1036(name, align); +seqs.push_back(newSeq1036); +name = "GQY1XT001AQSSN"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-C--A---C---ATA-A-----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1037(name, align); +seqs.push_back(newSeq1037); +name = "GQY1XT001AQKX4"; +align = "..T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1038(name, align); +seqs.push_back(newSeq1038); +name = "GQY1XT001AQ61I"; +align = "A----T-G--GA-A-A-C-T-G-C--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--TG-TT-C-G-C-A-AGAATGGA"; +Sequence newSeq1039(name, align); +seqs.push_back(newSeq1039); +name = "GQY1XT001AOO50"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-C-AAAC-G-G-TG-AA--TA-C-T-A-A-GT-G-T-C----G-G---------------GA-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq1040(name, align); +seqs.push_back(newSeq1040); +name = "GQY1XT001ANP6T"; +align = "..T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1041(name, align); +seqs.push_back(newSeq1041); +name = "GQY1XT001ANOK9"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1042(name, align); +seqs.push_back(newSeq1042); +name = "GQY1XT001AMRUB"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1043(name, align); +seqs.push_back(newSeq1043); +name = "GQY1XT001ALJLO"; +align = "C-C--T-T--GG-A-A-C-T-G-G--TT-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1044(name, align); +seqs.push_back(newSeq1044); +name = "GQY1XT001AJ2QW"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1045(name, align); +seqs.push_back(newSeq1045); +name = "GQY1XT001AHUSC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1046(name, align); +seqs.push_back(newSeq1046); +name = "GQY1XT001AHUAL"; +align = "A-T--C-T--AA-A-A-C-T-G-T--GA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGA-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AG-G-A-A--G-G-G-G-G--T-------ATA-A-------A-C-TCC-TCC-T-G-T-C-T-C--GA--A-G-C-A-AA-C-G-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1047(name, align); +seqs.push_back(newSeq1047); +name = "GQY1XT001AGOD0"; +align = "C-G--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GACC------C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1048(name, align); +seqs.push_back(newSeq1048); +name = "GQY1XT001AG9L4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1049(name, align); +seqs.push_back(newSeq1049); +name = "GQY1XT001AF8KT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1050(name, align); +seqs.push_back(newSeq1050); +name = "GQY1XT001AF4C6"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G------------ACCCAAG---------GGTCTCC-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1051(name, align); +seqs.push_back(newSeq1051); +name = "GQY1XT001AEZPI"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G------------GGCCAAGGC-------C-C-TCC-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1052(name, align); +seqs.push_back(newSeq1052); +name = "GQY1XT001AEYWL"; +align = "T-T--T-G-GAA-A-A-C-T-G-T--AT-A-G-C--T-G-A-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1053(name, align); +seqs.push_back(newSeq1053); +name = "GQY1XT001A9O5F"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C--G-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1054(name, align); +seqs.push_back(newSeq1054); +name = "GQY1XT001A9M51"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1055(name, align); +seqs.push_back(newSeq1055); +name = "GQY1XT001A9L9E"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GGAA-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1056(name, align); +seqs.push_back(newSeq1056); +name = "GQY1XT001A9ETE"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1057(name, align); +seqs.push_back(newSeq1057); +name = "GQY1XT001A95IK"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G---T--C-G-G-G-G--A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1058(name, align); +seqs.push_back(newSeq1058); +name = "GQY1XT001A913G"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1059(name, align); +seqs.push_back(newSeq1059); +name = "GQY1XT001A8KO0"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1060(name, align); +seqs.push_back(newSeq1060); +name = "GQY1XT001A84F0"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AG-A-A-C--T-A-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C--G-G------------G-----A--A----------A---C-C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq1061(name, align); +seqs.push_back(newSeq1061); +name = "GQY1XT001A7RP1"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-GAC--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1062(name, align); +seqs.push_back(newSeq1062); +name = "GQY1XT001A7CBN"; +align = "A-G--T-T--GA-T-A-C-T-G-G--AT-A-T-C--T-T-G-A-G-T-G-C-AG-TT-G-A-G-G-C-A--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-G--CTAA-GC-TG-C-A-ACT--GACA-TTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CGG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-C-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1063(name, align); +seqs.push_back(newSeq1063); +name = "GQY1XT001A79DG"; +align = "C-G--T-T-GAA-A-A-C-T-G-A--CG-T-T-C--T-T-G-AGG-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GGAA-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CCC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1064(name, align); +seqs.push_back(newSeq1064); +name = "GQY1XT001A6ZCJ"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TT-A-A-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C----G-G-G----A--------AA-------------C-----C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq1065(name, align); +seqs.push_back(newSeq1065); +name = "GQY1XT001A6TCB"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1066(name, align); +seqs.push_back(newSeq1066); +name = "GQY1XT001A6PVD"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-GG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1067(name, align); +seqs.push_back(newSeq1067); +name = "GQY1XT001A5XMR"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1068(name, align); +seqs.push_back(newSeq1068); +name = "GQY1XT001A5HB1"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1069(name, align); +seqs.push_back(newSeq1069); +name = "GQY1XT001A4YSE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1070(name, align); +seqs.push_back(newSeq1070); +name = "GQY1XT001A4NL2"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1071(name, align); +seqs.push_back(newSeq1071); +name = "GQY1XT001A3MZI"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1072(name, align); +seqs.push_back(newSeq1072); +name = "GQY1XT001A3K6U"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-G-T--T-G-G-G-G--G---T----CG-A-----A-C---C---T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGGAGG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq1073(name, align); +seqs.push_back(newSeq1073); +name = "GQY1XT001A3DE2"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-GCA--C---A----TA-AG----T-G-G-C-C---C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1074(name, align); +seqs.push_back(newSeq1074); +name = "GQY1XT001A3B9P"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AG-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1075(name, align); +seqs.push_back(newSeq1075); +name = "GQY1XT001A3680"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-GCT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A----------ACGACA-GT-----T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1076(name, align); +seqs.push_back(newSeq1076); +name = "GQY1XT001A2FJ5"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1077(name, align); +seqs.push_back(newSeq1077); +name = "GQY1XT001A2E5Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1078(name, align); +seqs.push_back(newSeq1078); +name = "GQY1XT001A1NGX"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-TC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1079(name, align); +seqs.push_back(newSeq1079); +name = "GQY1XT001A0Y0K"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1080(name, align); +seqs.push_back(newSeq1080); +name = "GQY1XT001C8WLX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1081(name, align); +seqs.push_back(newSeq1081); +name = "GQY1XT001ARWIN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1082(name, align); +seqs.push_back(newSeq1082); +name = "GQY1XT001DWF91"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1083(name, align); +seqs.push_back(newSeq1083); +name = "GQY1XT001A6L7F"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1084(name, align); +seqs.push_back(newSeq1084); +name = "GQY1XT001DCSAA"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1085(name, align); +seqs.push_back(newSeq1085); +name = "GQY1XT001AO4OF"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1086(name, align); +seqs.push_back(newSeq1086); +name = "GQY1XT001EYTUJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1087(name, align); +seqs.push_back(newSeq1087); +name = "GQY1XT001DX7JG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1088(name, align); +seqs.push_back(newSeq1088); +name = "GQY1XT001DD6MN"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GC-T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1089(name, align); +seqs.push_back(newSeq1089); +name = "GQY1XT001A2X6V"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1090(name, align); +seqs.push_back(newSeq1090); +name = "GQY1XT001ER71E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1091(name, align); +seqs.push_back(newSeq1091); +name = "GQY1XT001EK6NY"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AG-A-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-T--A---C----GA-A-----G-T-A-C-T-G-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1092(name, align); +seqs.push_back(newSeq1092); +name = "GQY1XT001E0S28"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1093(name, align); +seqs.push_back(newSeq1093); +name = "GQY1XT001DWQKZ"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq1094(name, align); +seqs.push_back(newSeq1094); +name = "GQY1XT001DMFJ7"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-T-C--C---G----AC-A-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1095(name, align); +seqs.push_back(newSeq1095); +name = "GQY1XT001DEIXZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1096(name, align); +seqs.push_back(newSeq1096); +name = "GQY1XT001CRU7B"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1097(name, align); +seqs.push_back(newSeq1097); +name = "GQY1XT001CQC5Q"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-A-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1098(name, align); +seqs.push_back(newSeq1098); +name = "GQY1XT001EURNN"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1099(name, align); +seqs.push_back(newSeq1099); +name = "GQY1XT001ETZ76"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-GTG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1100(name, align); +seqs.push_back(newSeq1100); +name = "GQY1XT001E25J6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1101(name, align); +seqs.push_back(newSeq1101); +name = "GQY1XT001DUTRF"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1102(name, align); +seqs.push_back(newSeq1102); +name = "GQY1XT001DP8X2"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1103(name, align); +seqs.push_back(newSeq1103); +name = "GQY1XT001DDM4B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1104(name, align); +seqs.push_back(newSeq1104); +name = "GQY1XT001CV0CL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1105(name, align); +seqs.push_back(newSeq1105); +name = "GQY1XT001CRXFZ"; +align = "A-A--C-T--AA-A-A-C-T-A-T--CT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-A--T-------GAA-TA------A-T-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1106(name, align); +seqs.push_back(newSeq1106); +name = "GQY1XT001CJN5F"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GATG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1107(name, align); +seqs.push_back(newSeq1107); +name = "GQY1XT001C8VP3"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GT-T-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-T-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq1108(name, align); +seqs.push_back(newSeq1108); +name = "GQY1XT001BWP2E"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----GAC-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1109(name, align); +seqs.push_back(newSeq1109); +name = "GQY1XT001BPR6V"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C--G-G---G------------A-A--AC---------------C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq1110(name, align); +seqs.push_back(newSeq1110); +name = "GQY1XT001BH3F6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1111(name, align); +seqs.push_back(newSeq1111); +name = "GQY1XT001B6491"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1112(name, align); +seqs.push_back(newSeq1112); +name = "GQY1XT001AUFBS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1113(name, align); +seqs.push_back(newSeq1113); +name = "GQY1XT001AT9WW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1114(name, align); +seqs.push_back(newSeq1114); +name = "GQY1XT001APJL5"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-CCGGGG-G-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1115(name, align); +seqs.push_back(newSeq1115); +name = "GQY1XT001A79Q2"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1116(name, align); +seqs.push_back(newSeq1116); +name = "GQY1XT001A5DY7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1117(name, align); +seqs.push_back(newSeq1117); +name = "GQY1XT001A57CJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1118(name, align); +seqs.push_back(newSeq1118); +name = "GQY1XT001A180R"; +align = "A-A--C-T--AA-A-A-C-T-A-T--TT-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-A--T-------ATT-A-----A-G-T-C-T-T-C-T-G-T-G-C-C--G---TCG-C-A-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1119(name, align); +seqs.push_back(newSeq1119); +name = "GQY1XT001EZ0T4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1120(name, align); +seqs.push_back(newSeq1120); +name = "GQY1XT001EYASV"; +align = "G-C--C-G--GG-T-A-C-G-G-G--CG-G-G-C--T-T-G-A-G-T-G-C-GG-TA-G-G-G-G-A-G--AC-T-GG-A-ATTCC-C-C-G-GT-GT-A-A-CGGT-G-GAA--TG-T-GT-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-AA-T-G-GC-GAA-GG-CAG-G-TC-T--CTGG-GC-CG-T-T-ACT--GACG-CTG-A-GG--A-G-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-GA--TG-C-T-G-G-AT-G-T-G--G-G-G-C-C--C------TTTT-TC-C----G-G-G-T-C-C-T-G-T-G-T-C--GG--A-G-C-T-AA-C-G-C-G-T-TAA-G-CAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq1121(name, align); +seqs.push_back(newSeq1121); +name = "GQY1XT001EX8JH"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1122(name, align); +seqs.push_back(newSeq1122); +name = "GQY1XT001EWSQ7"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1123(name, align); +seqs.push_back(newSeq1123); +name = "GQY1XT001EWJ0G"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----ATAA-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1124(name, align); +seqs.push_back(newSeq1124); +name = "GQY1XT001EWCLZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1125(name, align); +seqs.push_back(newSeq1125); +name = "GQY1XT001EW4SG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1126(name, align); +seqs.push_back(newSeq1126); +name = "GQY1XT001EVMR1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-C-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1127(name, align); +seqs.push_back(newSeq1127); +name = "GQY1XT001ESC8I"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-TGG-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1128(name, align); +seqs.push_back(newSeq1128); +name = "GQY1XT001ES7A7"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1129(name, align); +seqs.push_back(newSeq1129); +name = "GQY1XT001ERCRU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-GCG-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1130(name, align); +seqs.push_back(newSeq1130); +name = "GQY1XT001EPXLK"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G------------ATATTAAG--------TCT-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1131(name, align); +seqs.push_back(newSeq1131); +name = "GQY1XT001EPRKA"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1132(name, align); +seqs.push_back(newSeq1132); +name = "GQY1XT001EP50F"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-GTCCGG-G-G-G-GA-----------ATG-GCC---------C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1133(name, align); +seqs.push_back(newSeq1133); +name = "GQY1XT001ENIJK"; +align = "T-T--T-G--GA-A-A-C-T-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq1134(name, align); +seqs.push_back(newSeq1134); +name = "GQY1XT001ELQAV"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1135(name, align); +seqs.push_back(newSeq1135); +name = "GQY1XT001EL1XN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TAA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1136(name, align); +seqs.push_back(newSeq1136); +name = "GQY1XT001EK9UC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1137(name, align); +seqs.push_back(newSeq1137); +name = "GQY1XT001EJ6IE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1138(name, align); +seqs.push_back(newSeq1138); +name = "GQY1XT001EINOB"; +align = "G-T--T-T--GA-A-A-C-T-G-T--GG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGGAGG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1139(name, align); +seqs.push_back(newSeq1139); +name = "GQY1XT001EHR1D"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1140(name, align); +seqs.push_back(newSeq1140); +name = "GQY1XT001EG89W"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC---AAACA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1141(name, align); +seqs.push_back(newSeq1141); +name = "GQY1XT001EE7HC"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1142(name, align); +seqs.push_back(newSeq1142); +name = "GQY1XT001EDX2L"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-GTG-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1143(name, align); +seqs.push_back(newSeq1143); +name = "GQY1XT001ECV6N"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq1144(name, align); +seqs.push_back(newSeq1144); +name = "GQY1XT001EC768"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1145(name, align); +seqs.push_back(newSeq1145); +name = "GQY1XT001EC5ZD"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1146(name, align); +seqs.push_back(newSeq1146); +name = "GQY1XT001EBILS"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1147(name, align); +seqs.push_back(newSeq1147); +name = "GQY1XT001E5VFY"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AG-A-A-C--T-A-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G---G--C---C----CG-A-----A-G-G-G-C-GTC-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1148(name, align); +seqs.push_back(newSeq1148); +name = "GQY1XT001E4RC6"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1149(name, align); +seqs.push_back(newSeq1149); +name = "GQY1XT001E26E5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1150(name, align); +seqs.push_back(newSeq1150); +name = "GQY1XT001DZGN2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1151(name, align); +seqs.push_back(newSeq1151); +name = "GQY1XT001DY9EE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GC-G-T----T-G-G-A-G--G-------GTT-TCC-----G-C-C-CTT-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1152(name, align); +seqs.push_back(newSeq1152); +name = "GQY1XT001DXZ94"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1153(name, align); +seqs.push_back(newSeq1153); +name = "GQY1XT001DXXRY"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--TT-TGT-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1154(name, align); +seqs.push_back(newSeq1154); +name = "GQY1XT001DX5YX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----TCC-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1155(name, align); +seqs.push_back(newSeq1155); +name = "GQY1XT001DWB8A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1156(name, align); +seqs.push_back(newSeq1156); +name = "GQY1XT001DW661"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-TGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1157(name, align); +seqs.push_back(newSeq1157); +name = "GQY1XT001DVVV9"; +align = "A-T--T-T--GG-A-A-C-T-G-T--TA-A-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1158(name, align); +seqs.push_back(newSeq1158); +name = "GQY1XT001DVRMX"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1159(name, align); +seqs.push_back(newSeq1159); +name = "GQY1XT001DUGOQ"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AA-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-A-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1160(name, align); +seqs.push_back(newSeq1160); +name = "GQY1XT001DSKYO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1161(name, align); +seqs.push_back(newSeq1161); +name = "GQY1XT001DQEX4"; +align = "C-G----T--GA-A-A-C-T-G-A--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1162(name, align); +seqs.push_back(newSeq1162); +name = "GQY1XT001DPQ0U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1163(name, align); +seqs.push_back(newSeq1163); +name = "GQY1XT001DP988"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1164(name, align); +seqs.push_back(newSeq1164); +name = "GQY1XT001DOEFT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAGGTGA-----GCC-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1165(name, align); +seqs.push_back(newSeq1165); +name = "GQY1XT001DMV73"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1166(name, align); +seqs.push_back(newSeq1166); +name = "GQY1XT001DMAIL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1167(name, align); +seqs.push_back(newSeq1167); +name = "GQY1XT001DJKAP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1168(name, align); +seqs.push_back(newSeq1168); +name = "GQY1XT001DIY7I"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1169(name, align); +seqs.push_back(newSeq1169); +name = "GQY1XT001DI2F4"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1170(name, align); +seqs.push_back(newSeq1170); +name = "GQY1XT001DG89M"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A----------CCC-AAGGG-----T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1171(name, align); +seqs.push_back(newSeq1171); +name = "GQY1XT001DFPOZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1172(name, align); +seqs.push_back(newSeq1172); +name = "GQY1XT001DFNZA"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1173(name, align); +seqs.push_back(newSeq1173); +name = "GQY1XT001DFFH1"; +align = "G-T--C-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GG--CG-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AC-GA-T------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq1174(name, align); +seqs.push_back(newSeq1174); +name = "GQY1XT001DECCK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1175(name, align); +seqs.push_back(newSeq1175); +name = "GQY1XT001DDP54"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G--------G----TA-AG----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1176(name, align); +seqs.push_back(newSeq1176); +name = "GQY1XT001DCWXL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1177(name, align); +seqs.push_back(newSeq1177); +name = "GQY1XT001DCROU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1178(name, align); +seqs.push_back(newSeq1178); +name = "GQY1XT001DCHHZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1179(name, align); +seqs.push_back(newSeq1179); +name = "GQY1XT001DBR6R"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1180(name, align); +seqs.push_back(newSeq1180); +name = "GQY1XT001DBR15"; +align = "A-T--T-T--GA-A-A-C-TGT-T--TT-T-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1181(name, align); +seqs.push_back(newSeq1181); +name = "GQY1XT001DB6W5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--ATAA-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CAGGG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TTCGG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1182(name, align); +seqs.push_back(newSeq1182); +name = "GQY1XT001DB48V"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T----GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CTGG-T-T--T-G-C-G------------ATA-TACC--------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1183(name, align); +seqs.push_back(newSeq1183); +name = "GQY1XT001DAXHO"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1184(name, align); +seqs.push_back(newSeq1184); +name = "GQY1XT001DA3NK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1185(name, align); +seqs.push_back(newSeq1185); +name = "GQY1XT001D9XV0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1186(name, align); +seqs.push_back(newSeq1186); +name = "GQY1XT001D9PEI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1187(name, align); +seqs.push_back(newSeq1187); +name = "GQY1XT001D9NS0"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1188(name, align); +seqs.push_back(newSeq1188); +name = "GQY1XT001D9LBF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1189(name, align); +seqs.push_back(newSeq1189); +name = "GQY1XT001D90UB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TG------G-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1190(name, align); +seqs.push_back(newSeq1190); +name = "GQY1XT001D7SQ4"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1191(name, align); +seqs.push_back(newSeq1191); +name = "GQY1XT001D73BL"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-T-C--G-G-G-T-G--T---C----GA-A-----G-G-A-CGG-C-C-G-G-T-G-C-C--GC--A-G-C-G-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1192(name, align); +seqs.push_back(newSeq1192); +name = "GQY1XT001D6WIL"; +align = "G-T--T-C--AA-A-A-C-T-G-C--AG-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-A-G----------A-T-CA-AA-----C-T-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1193(name, align); +seqs.push_back(newSeq1193); +name = "GQY1XT001D54HY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-A-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1194(name, align); +seqs.push_back(newSeq1194); +name = "GQY1XT001D4WJX"; +align = "C-G----T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1195(name, align); +seqs.push_back(newSeq1195); +name = "GQY1XT001D4IMR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1196(name, align); +seqs.push_back(newSeq1196); +name = "GQY1XT001D4AF7"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1197(name, align); +seqs.push_back(newSeq1197); +name = "GQY1XT001D404H"; +align = "CAT--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1198(name, align); +seqs.push_back(newSeq1198); +name = "GQY1XT001D3JL9"; +align = "A-C--T-G--GG-A-A-C-T-G-T--CA-G-A-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-TAA--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1199(name, align); +seqs.push_back(newSeq1199); +name = "GQY1XT001D36LX"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1200(name, align); +seqs.push_back(newSeq1200); +name = "GQY1XT001D34SX"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1201(name, align); +seqs.push_back(newSeq1201); +name = "GQY1XT001D2Z78"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1202(name, align); +seqs.push_back(newSeq1202); +name = "GQY1XT001D26TY"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1203(name, align); +seqs.push_back(newSeq1203); +name = "GQY1XT001D0PS5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-T-G-G----G---T----AT-GG----A-C-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1204(name, align); +seqs.push_back(newSeq1204); +name = "GQY1XT001D096N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1205(name, align); +seqs.push_back(newSeq1205); +name = "GQY1XT001CZLBS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1206(name, align); +seqs.push_back(newSeq1206); +name = "GQY1XT001CZJDF"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1207(name, align); +seqs.push_back(newSeq1207); +name = "GQY1XT001CZIDF"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-C--T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1208(name, align); +seqs.push_back(newSeq1208); +name = "GQY1XT001CYTB5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1209(name, align); +seqs.push_back(newSeq1209); +name = "GQY1XT001CXSFV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-AA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1210(name, align); +seqs.push_back(newSeq1210); +name = "GQY1XT001CVW9J"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-----------ACGA-CAG---------T-GCCCC-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1211(name, align); +seqs.push_back(newSeq1211); +name = "GQY1XT001CVNYD"; +align = "G-T--T-C--AA-A-A-C-T-G-A--TA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq1212(name, align); +seqs.push_back(newSeq1212); +name = "GQY1XT001CVDAV"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-TCG--G-G-G-G-C--T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1213(name, align); +seqs.push_back(newSeq1213); +name = "GQY1XT001CTR8U"; +align = "G-A--T-C--AA-A-A-C-T-G-C--AA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1214(name, align); +seqs.push_back(newSeq1214); +name = "GQY1XT001CT03W"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-T-G-G-A-G-T-A-CG-GG-A-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1215(name, align); +seqs.push_back(newSeq1215); +name = "GQY1XT001CSFPB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1216(name, align); +seqs.push_back(newSeq1216); +name = "GQY1XT001CSE8M"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1217(name, align); +seqs.push_back(newSeq1217); +name = "GQY1XT001CS75Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1218(name, align); +seqs.push_back(newSeq1218); +name = "GQY1XT001CRCO3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1219(name, align); +seqs.push_back(newSeq1219); +name = "GQY1XT001CR3OY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G---G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1220(name, align); +seqs.push_back(newSeq1220); +name = "GQY1XT001CQNP0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1221(name, align); +seqs.push_back(newSeq1221); +name = "GQY1XT001CQISV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1222(name, align); +seqs.push_back(newSeq1222); +name = "GQY1XT001CO2B2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1223(name, align); +seqs.push_back(newSeq1223); +name = "GQY1XT001CO0A6"; +align = "C-G----T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1224(name, align); +seqs.push_back(newSeq1224); +name = "GQY1XT001CN21H"; +align = "C-G--T-TC-GA-A-A-C-TAG-GA-GG-C-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1225(name, align); +seqs.push_back(newSeq1225); +name = "GQY1XT001CMSDB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C---G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1226(name, align); +seqs.push_back(newSeq1226); +name = "GQY1XT001CMP9R"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1227(name, align); +seqs.push_back(newSeq1227); +name = "GQY1XT001CM9OV"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G---GGC-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1228(name, align); +seqs.push_back(newSeq1228); +name = "GQY1XT001CM539"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G---G--A---G----CA-AA----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1229(name, align); +seqs.push_back(newSeq1229); +name = "GQY1XT001CM0Q4"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAACGG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-A-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1230(name, align); +seqs.push_back(newSeq1230); +name = "GQY1XT001CLDR0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1231(name, align); +seqs.push_back(newSeq1231); +name = "GQY1XT001CKNS4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1232(name, align); +seqs.push_back(newSeq1232); +name = "GQY1XT001CJLK2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1233(name, align); +seqs.push_back(newSeq1233); +name = "GQY1XT001CJIIR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1234(name, align); +seqs.push_back(newSeq1234); +name = "GQY1XT001CJAFS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1235(name, align); +seqs.push_back(newSeq1235); +name = "GQY1XT001CJ3M8"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-T-C-A-AGAATGAA"; +Sequence newSeq1236(name, align); +seqs.push_back(newSeq1236); +name = "GQY1XT001CJ0AB"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CGAAAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1237(name, align); +seqs.push_back(newSeq1237); +name = "GQY1XT001CIODF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-TCCG-G-GTC-G------------AAT-GAGA--------T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1238(name, align); +seqs.push_back(newSeq1238); +name = "GQY1XT001CID7T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CG-------AT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1239(name, align); +seqs.push_back(newSeq1239); +name = "GQY1XT001CIB8G"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-GTACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1240(name, align); +seqs.push_back(newSeq1240); +name = "GQY1XT001CH8FI"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1241(name, align); +seqs.push_back(newSeq1241); +name = "GQY1XT001CFUS2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1242(name, align); +seqs.push_back(newSeq1242); +name = "GQY1XT001CFEOC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1243(name, align); +seqs.push_back(newSeq1243); +name = "GQY1XT001CFDUW"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1244(name, align); +seqs.push_back(newSeq1244); +name = "GQY1XT001CED3S"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1245(name, align); +seqs.push_back(newSeq1245); +name = "GQY1XT001CE5F9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1246(name, align); +seqs.push_back(newSeq1246); +name = "GQY1XT001CCIDU"; +align = "G-T--T-C--AA-A-A-C-T-G-C--AG-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC---AAACA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C----------CCA-CA-GG-----G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1247(name, align); +seqs.push_back(newSeq1247); +name = "GQY1XT001CBTVR"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1248(name, align); +seqs.push_back(newSeq1248); +name = "GQY1XT001CB6LJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1249(name, align); +seqs.push_back(newSeq1249); +name = "GQY1XT001CAO9E"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----CA-A-----G-G-G-T-C-TCC-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1250(name, align); +seqs.push_back(newSeq1250); +name = "GQY1XT001C9TKV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1251(name, align); +seqs.push_back(newSeq1251); +name = "GQY1XT001C9NXV"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1252(name, align); +seqs.push_back(newSeq1252); +name = "GQY1XT001C8JHR"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1253(name, align); +seqs.push_back(newSeq1253); +name = "GQY1XT001C7ZUB"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGGAGG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1254(name, align); +seqs.push_back(newSeq1254); +name = "GQY1XT001C7O3D"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1255(name, align); +seqs.push_back(newSeq1255); +name = "GQY1XT001C6LWA"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTGAA-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1256(name, align); +seqs.push_back(newSeq1256); +name = "GQY1XT001C6HBD"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1257(name, align); +seqs.push_back(newSeq1257); +name = "GQY1XT001C653P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GATA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1258(name, align); +seqs.push_back(newSeq1258); +name = "GQY1XT001C5MUK"; +align = "ATT--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-ACCC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G-AGGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA-CGG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1259(name, align); +seqs.push_back(newSeq1259); +name = "GQY1XT001C4W7P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAGTGGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1260(name, align); +seqs.push_back(newSeq1260); +name = "GQY1XT001C34WE"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-GC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1261(name, align); +seqs.push_back(newSeq1261); +name = "GQY1XT001C2MZ1"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1262(name, align); +seqs.push_back(newSeq1262); +name = "GQY1XT001C24KA"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1263(name, align); +seqs.push_back(newSeq1263); +name = "GQY1XT001C1J8R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1264(name, align); +seqs.push_back(newSeq1264); +name = "GQY1XT001C063V"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-A-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TA-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1265(name, align); +seqs.push_back(newSeq1265); +name = "GQY1XT001BZVNE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1266(name, align); +seqs.push_back(newSeq1266); +name = "GQY1XT001BZDM7"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-G-T--C-G-G-G-G--G---CT---CA-C-----G-G-G-CGC-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1267(name, align); +seqs.push_back(newSeq1267); +name = "GQY1XT001BY007"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1268(name, align); +seqs.push_back(newSeq1268); +name = "GQY1XT001BXHIS"; +align = "T-T--T-G--GG-A-A-C-T-G-T--TT-T-G-C--T-G-G-A-G-T-A-T-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CA-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-T-CG-G-G-T-G-T--C---G----AA-G-----G-A-C-G-G-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1269(name, align); +seqs.push_back(newSeq1269); +name = "GQY1XT001BX11Y"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-T-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1270(name, align); +seqs.push_back(newSeq1270); +name = "GQY1XT001BWODL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--TCG-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TTC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1271(name, align); +seqs.push_back(newSeq1271); +name = "GQY1XT001BW0YY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1272(name, align); +seqs.push_back(newSeq1272); +name = "GQY1XT001BVIE9"; +align = "AGT--T-G-GAA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1273(name, align); +seqs.push_back(newSeq1273); +name = "GQY1XT001BVA7U"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-GA--TA-C-T-C-G-CT-G-T-T----T-G-C-G--A--------TA-T-A-------C-G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1274(name, align); +seqs.push_back(newSeq1274); +name = "GQY1XT001BUF2I"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCA-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1275(name, align); +seqs.push_back(newSeq1275); +name = "GQY1XT001BSJ6O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1276(name, align); +seqs.push_back(newSeq1276); +name = "GQY1XT001BROZN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1277(name, align); +seqs.push_back(newSeq1277); +name = "GQY1XT001BPYYS"; +align = "A-C--T-G--GG-A-A-C-T-G-T--CA-G-A-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1278(name, align); +seqs.push_back(newSeq1278); +name = "GQY1XT001BN5O9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1279(name, align); +seqs.push_back(newSeq1279); +name = "GQY1XT001BLPCS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--CGA------GT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1280(name, align); +seqs.push_back(newSeq1280); +name = "GQY1XT001BKAZ3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1281(name, align); +seqs.push_back(newSeq1281); +name = "GQY1XT001BJITH"; +align = "A-T--T-G--GA-A-A-C-T-A-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1282(name, align); +seqs.push_back(newSeq1282); +name = "GQY1XT001BJIGU"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGAATGAA"; +Sequence newSeq1283(name, align); +seqs.push_back(newSeq1283); +name = "GQY1XT001BJ3FA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1284(name, align); +seqs.push_back(newSeq1284); +name = "GQY1XT001BIZB8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1285(name, align); +seqs.push_back(newSeq1285); +name = "GQY1XT001BI4HN"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1286(name, align); +seqs.push_back(newSeq1286); +name = "GQY1XT001BH4H2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1287(name, align); +seqs.push_back(newSeq1287); +name = "GQY1XT001BGGFI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1288(name, align); +seqs.push_back(newSeq1288); +name = "GQY1XT001BFQBJ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-G-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1289(name, align); +seqs.push_back(newSeq1289); +name = "GQY1XT001BE8ZJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1290(name, align); +seqs.push_back(newSeq1290); +name = "GQY1XT001BDSVG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1291(name, align); +seqs.push_back(newSeq1291); +name = "GQY1XT001BDGGT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1292(name, align); +seqs.push_back(newSeq1292); +name = "GQY1XT001BDBLL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1293(name, align); +seqs.push_back(newSeq1293); +name = "GQY1XT001BCIU5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1294(name, align); +seqs.push_back(newSeq1294); +name = "GQY1XT001BADJQ"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1295(name, align); +seqs.push_back(newSeq1295); +name = "GQY1XT001B9ID3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1296(name, align); +seqs.push_back(newSeq1296); +name = "GQY1XT001B948Z"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TG-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----GA-A-----G-C-C-G-T-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1297(name, align); +seqs.push_back(newSeq1297); +name = "GQY1XT001B92EF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1298(name, align); +seqs.push_back(newSeq1298); +name = "GQY1XT001B91G9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1299(name, align); +seqs.push_back(newSeq1299); +name = "GQY1XT001B8YZD"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-TCCG-G-G-G-G------------GAA-TGG---------C-C-C-C-T-G-G-GTG-C--CAC-A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1300(name, align); +seqs.push_back(newSeq1300); +name = "GQY1XT001B8ILX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1301(name, align); +seqs.push_back(newSeq1301); +name = "GQY1XT001B7HR5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1302(name, align); +seqs.push_back(newSeq1302); +name = "GQY1XT001B78LF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATT-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1303(name, align); +seqs.push_back(newSeq1303); +name = "GQY1XT001B760U"; +align = "A-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A-----------GG-AA--------T-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1304(name, align); +seqs.push_back(newSeq1304); +name = "GQY1XT001B5012"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-A-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1305(name, align); +seqs.push_back(newSeq1305); +name = "GQY1XT001B3JPS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CGG-----G-A-C-T-G-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1306(name, align); +seqs.push_back(newSeq1306); +name = "GQY1XT001B2Z3X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1307(name, align); +seqs.push_back(newSeq1307); +name = "GQY1XT001B2WW2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-ACCGT-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1308(name, align); +seqs.push_back(newSeq1308); +name = "GQY1XT001B2ISN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1309(name, align); +seqs.push_back(newSeq1309); +name = "GQY1XT001AZODE"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1310(name, align); +seqs.push_back(newSeq1310); +name = "GQY1XT001AZIY5"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1311(name, align); +seqs.push_back(newSeq1311); +name = "GQY1XT001AZ137"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-T-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G----T---C----GC-AA----G---A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq1312(name, align); +seqs.push_back(newSeq1312); +name = "GQY1XT001AZ0J0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1313(name, align); +seqs.push_back(newSeq1313); +name = "GQY1XT001AXWM2"; +align = "T-T--T-G--GG-A-A-C-T-G-T--TT-T-G-C--T-G-G-A-G-T-A-T-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1314(name, align); +seqs.push_back(newSeq1314); +name = "GQY1XT001AXWKG"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1315(name, align); +seqs.push_back(newSeq1315); +name = "GQY1XT001AXFW6"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-GG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq1316(name, align); +seqs.push_back(newSeq1316); +name = "GQY1XT001AWGFR"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1317(name, align); +seqs.push_back(newSeq1317); +name = "GQY1XT001AVIEN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1318(name, align); +seqs.push_back(newSeq1318); +name = "GQY1XT001ARHZE"; +align = "A-C--T-G--AG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-G-C-A--T---C----AA-G-----G-A-T-G-G-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1319(name, align); +seqs.push_back(newSeq1319); +name = "GQY1XT001APWQ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1320(name, align); +seqs.push_back(newSeq1320); +name = "GQY1XT001AP3GC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-AT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1321(name, align); +seqs.push_back(newSeq1321); +name = "GQY1XT001AOY82"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1322(name, align); +seqs.push_back(newSeq1322); +name = "GQY1XT001AOTBI"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--CACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1323(name, align); +seqs.push_back(newSeq1323); +name = "GQY1XT001ANPOD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1324(name, align); +seqs.push_back(newSeq1324); +name = "GQY1XT001AN0O0"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AA-C-----A-G-A-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1325(name, align); +seqs.push_back(newSeq1325); +name = "GQY1XT001AM04G"; +align = "C-T--T-G--CG-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-GTC--C-------GAC-AG------G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1326(name, align); +seqs.push_back(newSeq1326); +name = "GQY1XT001AJDZP"; +align = "C-G--T-T-GAA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1327(name, align); +seqs.push_back(newSeq1327); +name = "GQY1XT001AJBW8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-GCG-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1328(name, align); +seqs.push_back(newSeq1328); +name = "GQY1XT001AJ8JE"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1329(name, align); +seqs.push_back(newSeq1329); +name = "GQY1XT001AHQ4E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1330(name, align); +seqs.push_back(newSeq1330); +name = "GQY1XT001AGQKS"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---A----AC-A-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1331(name, align); +seqs.push_back(newSeq1331); +name = "GQY1XT001AFW2U"; +align = "A----T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1332(name, align); +seqs.push_back(newSeq1332); +name = "GQY1XT001AF3OR"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATAAA"; +Sequence newSeq1333(name, align); +seqs.push_back(newSeq1333); +name = "GQY1XT001AEJCX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAG-TTG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1334(name, align); +seqs.push_back(newSeq1334); +name = "GQY1XT001A9WRU"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1335(name, align); +seqs.push_back(newSeq1335); +name = "GQY1XT001A9CWO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1336(name, align); +seqs.push_back(newSeq1336); +name = "GQY1XT001A90IT"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C----G-G-G-G--A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1337(name, align); +seqs.push_back(newSeq1337); +name = "GQY1XT001A8LEY"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGC-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1338(name, align); +seqs.push_back(newSeq1338); +name = "GQY1XT001A6JJ4"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1339(name, align); +seqs.push_back(newSeq1339); +name = "GQY1XT001A5ZJV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1340(name, align); +seqs.push_back(newSeq1340); +name = "GQY1XT001A5X5F"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1341(name, align); +seqs.push_back(newSeq1341); +name = "GQY1XT001A4Y95"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-A-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1342(name, align); +seqs.push_back(newSeq1342); +name = "GQY1XT001A3TPF"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GTGG-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1343(name, align); +seqs.push_back(newSeq1343); +name = "GQY1XT001A35IX"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1344(name, align); +seqs.push_back(newSeq1344); +name = "GQY1XT001A2MTB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CCC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1345(name, align); +seqs.push_back(newSeq1345); +name = "GQY1XT001A103Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-ATGG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1346(name, align); +seqs.push_back(newSeq1346); +name = "GQY1XT001AH00T"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT---C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1347(name, align); +seqs.push_back(newSeq1347); +name = "GQY1XT001B2VYN"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1348(name, align); +seqs.push_back(newSeq1348); +name = "GQY1XT001C5VZB"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1349(name, align); +seqs.push_back(newSeq1349); +name = "GQY1XT001C3CGW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1350(name, align); +seqs.push_back(newSeq1350); +name = "GQY1XT001BX1WD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1351(name, align); +seqs.push_back(newSeq1351); +name = "GQY1XT001ERPB8"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1352(name, align); +seqs.push_back(newSeq1352); +name = "GQY1XT001EK4QD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1353(name, align); +seqs.push_back(newSeq1353); +name = "GQY1XT001E0JJ6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1354(name, align); +seqs.push_back(newSeq1354); +name = "GQY1XT001DI6MT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1355(name, align); +seqs.push_back(newSeq1355); +name = "GQY1XT001CTMYM"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CA-A-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1356(name, align); +seqs.push_back(newSeq1356); +name = "GQY1XT001CGMM4"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1357(name, align); +seqs.push_back(newSeq1357); +name = "GQY1XT001C8CYT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1358(name, align); +seqs.push_back(newSeq1358); +name = "GQY1XT001C1TAA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1359(name, align); +seqs.push_back(newSeq1359); +name = "GQY1XT001ARJ71"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1360(name, align); +seqs.push_back(newSeq1360); +name = "GQY1XT001ANOGE"; +align = "C-G--T-T--GA-A-A-C-T---G--AC-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1361(name, align); +seqs.push_back(newSeq1361); +name = "GQY1XT001A1PQ5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1362(name, align); +seqs.push_back(newSeq1362); +name = "GQY1XT001EWMVA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1363(name, align); +seqs.push_back(newSeq1363); +name = "GQY1XT001EU4WB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1364(name, align); +seqs.push_back(newSeq1364); +name = "GQY1XT001ES0JB"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1365(name, align); +seqs.push_back(newSeq1365); +name = "GQY1XT001ENTCB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-C-T-A-AT-T-G-T--G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1366(name, align); +seqs.push_back(newSeq1366); +name = "GQY1XT001EN26C"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1367(name, align); +seqs.push_back(newSeq1367); +name = "GQY1XT001EK1FO"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-TC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1368(name, align); +seqs.push_back(newSeq1368); +name = "GQY1XT001ECKCE"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----CA-AG----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-T-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1369(name, align); +seqs.push_back(newSeq1369); +name = "GQY1XT001DWTG9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1370(name, align); +seqs.push_back(newSeq1370); +name = "GQY1XT001DG6NS"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1371(name, align); +seqs.push_back(newSeq1371); +name = "GQY1XT001DDPZU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-AG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-AAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1372(name, align); +seqs.push_back(newSeq1372); +name = "GQY1XT001DBZNZ"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1373(name, align); +seqs.push_back(newSeq1373); +name = "GQY1XT001DA6U8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1374(name, align); +seqs.push_back(newSeq1374); +name = "GQY1XT001CU13S"; +align = "A----T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1375(name, align); +seqs.push_back(newSeq1375); +name = "GQY1XT001COMF5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1376(name, align); +seqs.push_back(newSeq1376); +name = "GQY1XT001CLMLV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1377(name, align); +seqs.push_back(newSeq1377); +name = "GQY1XT001CK4OI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1378(name, align); +seqs.push_back(newSeq1378); +name = "GQY1XT001CGNXV"; +align = "T-T--T-G--GG-A-A-C-T-G-T--TT-T-G-C--T-G-G-A-G-T-A-T-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CA-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-T-CG-G-G-T-G-T--C---G----AA-G-----G-A-C-G-G-C-C-G-G-T-G-C-C--GC--A-G-C-G-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1379(name, align); +seqs.push_back(newSeq1379); +name = "GQY1XT001CAUVT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1380(name, align); +seqs.push_back(newSeq1380); +name = "GQY1XT001BRZLF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1381(name, align); +seqs.push_back(newSeq1381); +name = "GQY1XT001BNGMO"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AA-CA----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1382(name, align); +seqs.push_back(newSeq1382); +name = "GQY1XT001BLEL1"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1383(name, align); +seqs.push_back(newSeq1383); +name = "GQY1XT001BI8Q8"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1384(name, align); +seqs.push_back(newSeq1384); +name = "GQY1XT001BGINZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1385(name, align); +seqs.push_back(newSeq1385); +name = "GQY1XT001BAFIL"; +align = "C-T--T-G--CG-A-A-C-T-G-T--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GA-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq1386(name, align); +seqs.push_back(newSeq1386); +name = "GQY1XT001BADAL"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1387(name, align); +seqs.push_back(newSeq1387); +name = "GQY1XT001B9YU3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1388(name, align); +seqs.push_back(newSeq1388); +name = "GQY1XT001B9LVE"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----CA-C-----G-G-G-C-GCT-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1389(name, align); +seqs.push_back(newSeq1389); +name = "GQY1XT001B7LFF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1390(name, align); +seqs.push_back(newSeq1390); +name = "GQY1XT001AVZNJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1391(name, align); +seqs.push_back(newSeq1391); +name = "GQY1XT001ALAP8"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1392(name, align); +seqs.push_back(newSeq1392); +name = "GQY1XT001AK5P4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1393(name, align); +seqs.push_back(newSeq1393); +name = "GQY1XT001A44RE"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1394(name, align); +seqs.push_back(newSeq1394); +name = "GQY1XT001A41BE"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1395(name, align); +seqs.push_back(newSeq1395); +name = "GQY1XT001EYW01"; +align = "T-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-A--C---G----AC-A-----G-T-G-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1396(name, align); +seqs.push_back(newSeq1396); +name = "GQY1XT001EY2DY"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1397(name, align); +seqs.push_back(newSeq1397); +name = "GQY1XT001EXARN"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA-C-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1398(name, align); +seqs.push_back(newSeq1398); +name = "GQY1XT001EX4SQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1399(name, align); +seqs.push_back(newSeq1399); +name = "GQY1XT001EWW6P"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1400(name, align); +seqs.push_back(newSeq1400); +name = "GQY1XT001EWMHC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1401(name, align); +seqs.push_back(newSeq1401); +name = "GQY1XT001EVYE7"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1402(name, align); +seqs.push_back(newSeq1402); +name = "GQY1XT001EVK6W"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1403(name, align); +seqs.push_back(newSeq1403); +name = "GQY1XT001EVDLH"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CAGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1404(name, align); +seqs.push_back(newSeq1404); +name = "GQY1XT001EUNUL"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1405(name, align); +seqs.push_back(newSeq1405); +name = "GQY1XT001EUAHK"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1406(name, align); +seqs.push_back(newSeq1406); +name = "GQY1XT001ETWIV"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-TAG-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1407(name, align); +seqs.push_back(newSeq1407); +name = "GQY1XT001ETHDG"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1408(name, align); +seqs.push_back(newSeq1408); +name = "GQY1XT001ET3LN"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---C----AG-A-----G-T-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1409(name, align); +seqs.push_back(newSeq1409); +name = "GQY1XT001ET2GC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1410(name, align); +seqs.push_back(newSeq1410); +name = "GQY1XT001ESW3T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1411(name, align); +seqs.push_back(newSeq1411); +name = "GQY1XT001ES5NN"; +align = "T-C--T-T--GG-A-A-C-C-G-C--AT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1412(name, align); +seqs.push_back(newSeq1412); +name = "GQY1XT001EPGP5"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AA-A-T-C--T-T-G-A-G-T-G-C-CG-GA-G-A---GGT-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1413(name, align); +seqs.push_back(newSeq1413); +name = "GQY1XT001EPEVX"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1414(name, align); +seqs.push_back(newSeq1414); +name = "GQY1XT001EO96Y"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G---C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1415(name, align); +seqs.push_back(newSeq1415); +name = "GQY1XT001ENU0Z"; +align = "T-T--T-T--GG-A-A-C-T-G-C--CC-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-A-G------C----GA-TA----G---C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1416(name, align); +seqs.push_back(newSeq1416); +name = "GQY1XT001EN3AH"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1417(name, align); +seqs.push_back(newSeq1417); +name = "GQY1XT001EM72G"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1418(name, align); +seqs.push_back(newSeq1418); +name = "GQY1XT001ELD3K"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-A-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1419(name, align); +seqs.push_back(newSeq1419); +name = "GQY1XT001ELBY4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1420(name, align); +seqs.push_back(newSeq1420); +name = "GQY1XT001EL950"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1421(name, align); +seqs.push_back(newSeq1421); +name = "GQY1XT001EL0JX"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-TCCGGG-G-G-GA-----------ATG-GCC---------C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1422(name, align); +seqs.push_back(newSeq1422); +name = "GQY1XT001EK28K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CG-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1423(name, align); +seqs.push_back(newSeq1423); +name = "GQY1XT001EJ1PO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAGTTGG-----G-G-G-C-T-G-G-G-T-G-C-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1424(name, align); +seqs.push_back(newSeq1424); +name = "GQY1XT001EIXO1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-A-C-A-ACGGTGAA"; +Sequence newSeq1425(name, align); +seqs.push_back(newSeq1425); +name = "GQY1XT001EITFI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1426(name, align); +seqs.push_back(newSeq1426); +name = "GQY1XT001EIQRA"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-C----A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1427(name, align); +seqs.push_back(newSeq1427); +name = "GQY1XT001EI0LV"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C---A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1428(name, align); +seqs.push_back(newSeq1428); +name = "GQY1XT001EGXAQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1429(name, align); +seqs.push_back(newSeq1429); +name = "GQY1XT001EF612"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-T----T---C----AA-GA------A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1430(name, align); +seqs.push_back(newSeq1430); +name = "GQY1XT001EF5T3"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1431(name, align); +seqs.push_back(newSeq1431); +name = "GQY1XT001EDEJO"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1432(name, align); +seqs.push_back(newSeq1432); +name = "GQY1XT001EDD2Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1433(name, align); +seqs.push_back(newSeq1433); +name = "GQY1XT001EDCRZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCAG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1434(name, align); +seqs.push_back(newSeq1434); +name = "GQY1XT001ED2KQ"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-GTA-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-TGG-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1435(name, align); +seqs.push_back(newSeq1435); +name = "GQY1XT001ECP6K"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-A-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-G-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1436(name, align); +seqs.push_back(newSeq1436); +name = "GQY1XT001ECKQ8"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1437(name, align); +seqs.push_back(newSeq1437); +name = "GQY1XT001EBZGK"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA--C-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1438(name, align); +seqs.push_back(newSeq1438); +name = "GQY1XT001EBMY4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1439(name, align); +seqs.push_back(newSeq1439); +name = "GQY1XT001EBJEN"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1440(name, align); +seqs.push_back(newSeq1440); +name = "GQY1XT001EAR1W"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1441(name, align); +seqs.push_back(newSeq1441); +name = "GQY1XT001EAKA8"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1442(name, align); +seqs.push_back(newSeq1442); +name = "GQY1XT001EAB4X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1443(name, align); +seqs.push_back(newSeq1443); +name = "GQY1XT001E6HLG"; +align = "ATT--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-G--AC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1444(name, align); +seqs.push_back(newSeq1444); +name = "GQY1XT001E5SDM"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACAGTGAA"; +Sequence newSeq1445(name, align); +seqs.push_back(newSeq1445); +name = "GQY1XT001E5SA2"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1446(name, align); +seqs.push_back(newSeq1446); +name = "GQY1XT001E46CM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A--------GA-AT------G-ATCCC-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1447(name, align); +seqs.push_back(newSeq1447); +name = "GQY1XT001E20HL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1448(name, align); +seqs.push_back(newSeq1448); +name = "GQY1XT001E1M0P"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-G---C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-C--C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1449(name, align); +seqs.push_back(newSeq1449); +name = "GQY1XT001E15F4"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1450(name, align); +seqs.push_back(newSeq1450); +name = "GQY1XT001E0UJM"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1451(name, align); +seqs.push_back(newSeq1451); +name = "GQY1XT001DZNGQ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1452(name, align); +seqs.push_back(newSeq1452); +name = "GQY1XT001DZEW1"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-G----G---C-----G-AA----G-C-C-C-T-T-T-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1453(name, align); +seqs.push_back(newSeq1453); +name = "GQY1XT001DZ8GV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1454(name, align); +seqs.push_back(newSeq1454); +name = "GQY1XT001DZ0KY"; +align = "C-G----T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1455(name, align); +seqs.push_back(newSeq1455); +name = "GQY1XT001DY0CK"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G---G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1456(name, align); +seqs.push_back(newSeq1456); +name = "GQY1XT001DWHYF"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1457(name, align); +seqs.push_back(newSeq1457); +name = "GQY1XT001DWDBA"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTAGA"; +Sequence newSeq1458(name, align); +seqs.push_back(newSeq1458); +name = "GQY1XT001DVNA6"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-GG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1459(name, align); +seqs.push_back(newSeq1459); +name = "GQY1XT001DVCOB"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1460(name, align); +seqs.push_back(newSeq1460); +name = "GQY1XT001DV35L"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1461(name, align); +seqs.push_back(newSeq1461); +name = "GQY1XT001DUECS"; +align = "TCT--G-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AGCG-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1462(name, align); +seqs.push_back(newSeq1462); +name = "GQY1XT001DU444"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1463(name, align); +seqs.push_back(newSeq1463); +name = "GQY1XT001DU3CY"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1464(name, align); +seqs.push_back(newSeq1464); +name = "GQY1XT001DSCKH"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1465(name, align); +seqs.push_back(newSeq1465); +name = "GQY1XT001DS64R"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1466(name, align); +seqs.push_back(newSeq1466); +name = "GQY1XT001DRX66"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1467(name, align); +seqs.push_back(newSeq1467); +name = "GQY1XT001DRTLT"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A-----------GG-AA--------T-T-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1468(name, align); +seqs.push_back(newSeq1468); +name = "GQY1XT001DRDE3"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CG-C-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-C-C--C---C----AT-T-----G-G-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1469(name, align); +seqs.push_back(newSeq1469); +name = "GQY1XT001DR8SK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1470(name, align); +seqs.push_back(newSeq1470); +name = "GQY1XT001DQXNX"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1471(name, align); +seqs.push_back(newSeq1471); +name = "GQY1XT001DQGHU"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G-AGGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1472(name, align); +seqs.push_back(newSeq1472); +name = "GQY1XT001DPRCM"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1473(name, align); +seqs.push_back(newSeq1473); +name = "GQY1XT001DNTMI"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---G----CA-A-----G---A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq1474(name, align); +seqs.push_back(newSeq1474); +name = "GQY1XT001DNKEL"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AG-A-G-C--T-G-G-A-G-T-G-C--G-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-T--A---C----GA-A-----G-T-A-C-T-G-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1475(name, align); +seqs.push_back(newSeq1475); +name = "GQY1XT001DMLLT"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-T--A---C----AG-A-----A-G-TAC-C-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1476(name, align); +seqs.push_back(newSeq1476); +name = "GQY1XT001DLWAK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GGAG-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1477(name, align); +seqs.push_back(newSeq1477); +name = "GQY1XT001DL86Q"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1478(name, align); +seqs.push_back(newSeq1478); +name = "GQY1XT001DKH2H"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-G-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1479(name, align); +seqs.push_back(newSeq1479); +name = "GQY1XT001DJZXU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1480(name, align); +seqs.push_back(newSeq1480); +name = "GQY1XT001DJTQD"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1481(name, align); +seqs.push_back(newSeq1481); +name = "GQY1XT001DJSTQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1482(name, align); +seqs.push_back(newSeq1482); +name = "GQY1XT001DJGVS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TC-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1483(name, align); +seqs.push_back(newSeq1483); +name = "GQY1XT001DIT11"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1484(name, align); +seqs.push_back(newSeq1484); +name = "GQY1XT001DI0XA"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1485(name, align); +seqs.push_back(newSeq1485); +name = "GQY1XT001DHLN2"; +align = "C-C--T-G--TG-A-A-C-T-G-G--GG-G-A-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-GA-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C--------GC-AA------G-G-C-T-T-C-G-G-T-G-C-C--GG--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq1486(name, align); +seqs.push_back(newSeq1486); +name = "GQY1XT001DGULU"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G--------CC-AAG-----GCC-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1487(name, align); +seqs.push_back(newSeq1487); +name = "GQY1XT001DFWED"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G---T--G-A-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1488(name, align); +seqs.push_back(newSeq1488); +name = "GQY1XT001DFKHN"; +align = "C-G--T-T--G--A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-TGG--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1489(name, align); +seqs.push_back(newSeq1489); +name = "GQY1XT001DF84J"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG--AA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1490(name, align); +seqs.push_back(newSeq1490); +name = "GQY1XT001DF1JP"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1491(name, align); +seqs.push_back(newSeq1491); +name = "GQY1XT001DDZ64"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G-AGGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-AC-G---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1492(name, align); +seqs.push_back(newSeq1492); +name = "GQY1XT001DDYWL"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1493(name, align); +seqs.push_back(newSeq1493); +name = "GQY1XT001DDUAP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1494(name, align); +seqs.push_back(newSeq1494); +name = "GQY1XT001DCOLP"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-G-G-GT-G-T-C--G-G-G-GCA--C---A----TA-AG----T-G-G-C-C---C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1495(name, align); +seqs.push_back(newSeq1495); +name = "GQY1XT001DCECZ"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1496(name, align); +seqs.push_back(newSeq1496); +name = "GQY1XT001DCDRA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-TGCC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CGG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1497(name, align); +seqs.push_back(newSeq1497); +name = "GQY1XT001DC9ED"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-GAAA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1498(name, align); +seqs.push_back(newSeq1498); +name = "GQY1XT001DC57H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CA-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1499(name, align); +seqs.push_back(newSeq1499); +name = "GQY1XT001DC2D4"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-A-G-C--C-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1500(name, align); +seqs.push_back(newSeq1500); +name = "GQY1XT001DBXHE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1501(name, align); +seqs.push_back(newSeq1501); +name = "GQY1XT001DBI9W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1502(name, align); +seqs.push_back(newSeq1502); +name = "GQY1XT001DAGYA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1503(name, align); +seqs.push_back(newSeq1503); +name = "GQY1XT001D99ZR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-G--C--------TA-GA------G-C-C-CTT-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1504(name, align); +seqs.push_back(newSeq1504); +name = "GQY1XT001D91DA"; +align = "CAT--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGCA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1505(name, align); +seqs.push_back(newSeq1505); +name = "GQY1XT001D8IRX"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GATA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1506(name, align); +seqs.push_back(newSeq1506); +name = "GQY1XT001D8D82"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1507(name, align); +seqs.push_back(newSeq1507); +name = "GQY1XT001D71UW"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A----------GCA-AA-GC-----T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1508(name, align); +seqs.push_back(newSeq1508); +name = "GQY1XT001D6ZO3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--TAG-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C-------TTC-GGC-----T-C---T-G-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1509(name, align); +seqs.push_back(newSeq1509); +name = "GQY1XT001D6G48"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1510(name, align); +seqs.push_back(newSeq1510); +name = "GQY1XT001D6CXP"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1511(name, align); +seqs.push_back(newSeq1511); +name = "GQY1XT001D6BVE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1512(name, align); +seqs.push_back(newSeq1512); +name = "GQY1XT001D685S"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1513(name, align); +seqs.push_back(newSeq1513); +name = "GQY1XT001D65FP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1514(name, align); +seqs.push_back(newSeq1514); +name = "GQY1XT001D5NPT"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1515(name, align); +seqs.push_back(newSeq1515); +name = "GQY1XT001D4OGY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1516(name, align); +seqs.push_back(newSeq1516); +name = "GQY1XT001D44LT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1517(name, align); +seqs.push_back(newSeq1517); +name = "GQY1XT001D41V5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1518(name, align); +seqs.push_back(newSeq1518); +name = "GQY1XT001D3GTN"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G---G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1519(name, align); +seqs.push_back(newSeq1519); +name = "GQY1XT001D3FCE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1520(name, align); +seqs.push_back(newSeq1520); +name = "GQY1XT001D35QL"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTAG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1521(name, align); +seqs.push_back(newSeq1521); +name = "GQY1XT001D2XVX"; +align = "T-T--T-G--GG-A-A-C-T-G-T--TT-T-G-C--T-G-G-A-G-T-A-T-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CA-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-T-C--G-G-G-T-G--T---CG---AA-G-----G-A-C-G-G-C-C-G-G-T-G-C-C--GC--A-G-C-G-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1522(name, align); +seqs.push_back(newSeq1522); +name = "GQY1XT001D29U4"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1523(name, align); +seqs.push_back(newSeq1523); +name = "GQY1XT001D20M4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATT-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1524(name, align); +seqs.push_back(newSeq1524); +name = "GQY1XT001D1UIA"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1525(name, align); +seqs.push_back(newSeq1525); +name = "GQY1XT001D1RMM"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1526(name, align); +seqs.push_back(newSeq1526); +name = "GQY1XT001D190O"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G----------TTTCGA-TG-----C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq1527(name, align); +seqs.push_back(newSeq1527); +name = "GQY1XT001D1555"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-AGT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1528(name, align); +seqs.push_back(newSeq1528); +name = "GQY1XT001D0VK0"; +align = "A-T--T-G--G--A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---CG---AC-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1529(name, align); +seqs.push_back(newSeq1529); +name = "GQY1XT001D0SW9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1530(name, align); +seqs.push_back(newSeq1530); +name = "GQY1XT001D0KKO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1531(name, align); +seqs.push_back(newSeq1531); +name = "GQY1XT001D059N"; +align = "A-G----T--GA-A-A-C-T-G-G--CT-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1532(name, align); +seqs.push_back(newSeq1532); +name = "GQY1XT001CZDP6"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1533(name, align); +seqs.push_back(newSeq1533); +name = "GQY1XT001CZD5D"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq1534(name, align); +seqs.push_back(newSeq1534); +name = "GQY1XT001CZ6YY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1535(name, align); +seqs.push_back(newSeq1535); +name = "GQY1XT001CYV83"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1536(name, align); +seqs.push_back(newSeq1536); +name = "GQY1XT001CYM11"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G--------GA-A-------T-T-C---C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1537(name, align); +seqs.push_back(newSeq1537); +name = "GQY1XT001CXU0W"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-C--C---T----AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1538(name, align); +seqs.push_back(newSeq1538); +name = "GQY1XT001CXAOY"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1539(name, align); +seqs.push_back(newSeq1539); +name = "GQY1XT001CX782"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--G---T----CA-AG----G-C-T-C-A-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1540(name, align); +seqs.push_back(newSeq1540); +name = "GQY1XT001CWR6V"; +align = "G-T--T-T--GA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1541(name, align); +seqs.push_back(newSeq1541); +name = "GQY1XT001CWIZ7"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1542(name, align); +seqs.push_back(newSeq1542); +name = "GQY1XT001CW6Y0"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----GAC-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1543(name, align); +seqs.push_back(newSeq1543); +name = "GQY1XT001CVXRA"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1544(name, align); +seqs.push_back(newSeq1544); +name = "GQY1XT001CV6D0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-AGG-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1545(name, align); +seqs.push_back(newSeq1545); +name = "GQY1XT001CUJ97"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1546(name, align); +seqs.push_back(newSeq1546); +name = "GQY1XT001CUE16"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1547(name, align); +seqs.push_back(newSeq1547); +name = "GQY1XT001CU7PP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1548(name, align); +seqs.push_back(newSeq1548); +name = "GQY1XT001CU6OX"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1549(name, align); +seqs.push_back(newSeq1549); +name = "GQY1XT001CSFEZ"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1550(name, align); +seqs.push_back(newSeq1550); +name = "GQY1XT001CRSPD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-------G-G-G-G-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1551(name, align); +seqs.push_back(newSeq1551); +name = "GQY1XT001CRPGT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1552(name, align); +seqs.push_back(newSeq1552); +name = "GQY1XT001CRDDY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-G-T--C-C-G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1553(name, align); +seqs.push_back(newSeq1553); +name = "GQY1XT001CPIDA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-TGG-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1554(name, align); +seqs.push_back(newSeq1554); +name = "GQY1XT001COYQ7"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G---G-T--G---G----CA-AA----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1555(name, align); +seqs.push_back(newSeq1555); +name = "GQY1XT001COVAB"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1556(name, align); +seqs.push_back(newSeq1556); +name = "GQY1XT001CO8VV"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-GTG-G------------ACAAAGTC--------C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1557(name, align); +seqs.push_back(newSeq1557); +name = "GQY1XT001CO0K0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1558(name, align); +seqs.push_back(newSeq1558); +name = "GQY1XT001CNVA3"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TTC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq1559(name, align); +seqs.push_back(newSeq1559); +name = "GQY1XT001CNJGA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G---G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAACG-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1560(name, align); +seqs.push_back(newSeq1560); +name = "GQY1XT001CMX16"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1561(name, align); +seqs.push_back(newSeq1561); +name = "GQY1XT001CMV43"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1562(name, align); +seqs.push_back(newSeq1562); +name = "GQY1XT001CMRMZ"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---T----AA-A-----GAC-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1563(name, align); +seqs.push_back(newSeq1563); +name = "GQY1XT001CML6P"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1564(name, align); +seqs.push_back(newSeq1564); +name = "GQY1XT001CLRD6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1565(name, align); +seqs.push_back(newSeq1565); +name = "GQY1XT001CKIUP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1566(name, align); +seqs.push_back(newSeq1566); +name = "GQY1XT001CKACU"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G---G--G---C----AC-A-----G-C-C---C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1567(name, align); +seqs.push_back(newSeq1567); +name = "GQY1XT001CIO6Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1568(name, align); +seqs.push_back(newSeq1568); +name = "GQY1XT001CINOS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-ACTG-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1569(name, align); +seqs.push_back(newSeq1569); +name = "GQY1XT001CIG4J"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1570(name, align); +seqs.push_back(newSeq1570); +name = "GQY1XT001CI3UJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T--------T-T-G--C-------GA--TAT-----A-C-G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1571(name, align); +seqs.push_back(newSeq1571); +name = "GQY1XT001CHXQQ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1572(name, align); +seqs.push_back(newSeq1572); +name = "GQY1XT001CH8ZD"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1573(name, align); +seqs.push_back(newSeq1573); +name = "GQY1XT001CGZI2"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1574(name, align); +seqs.push_back(newSeq1574); +name = "GQY1XT001CGMGM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1575(name, align); +seqs.push_back(newSeq1575); +name = "GQY1XT001CFTZL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1576(name, align); +seqs.push_back(newSeq1576); +name = "GQY1XT001CEU3H"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1577(name, align); +seqs.push_back(newSeq1577); +name = "GQY1XT001CES55"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1578(name, align); +seqs.push_back(newSeq1578); +name = "GQY1XT001CENGR"; +align = "C-G----T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1579(name, align); +seqs.push_back(newSeq1579); +name = "GQY1XT001CEHFU"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---T----AA-AG----A-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1580(name, align); +seqs.push_back(newSeq1580); +name = "GQY1XT001CE091"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1581(name, align); +seqs.push_back(newSeq1581); +name = "GQY1XT001CDWT4"; +align = "C-GT-T-T-GAA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1582(name, align); +seqs.push_back(newSeq1582); +name = "GQY1XT001CDMZ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1583(name, align); +seqs.push_back(newSeq1583); +name = "GQY1XT001CDA2V"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-GTCCGG-T-C-C-GA-----------ATG-AGG---------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1584(name, align); +seqs.push_back(newSeq1584); +name = "GQY1XT001CCF82"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1585(name, align); +seqs.push_back(newSeq1585); +name = "GQY1XT001CBCVJ"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1586(name, align); +seqs.push_back(newSeq1586); +name = "GQY1XT001CAKVS"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CA-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGCA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1587(name, align); +seqs.push_back(newSeq1587); +name = "GQY1XT001CA3UA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1588(name, align); +seqs.push_back(newSeq1588); +name = "GQY1XT001C9V0H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1589(name, align); +seqs.push_back(newSeq1589); +name = "GQY1XT001C8RQZ"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---C----AT-AA----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1590(name, align); +seqs.push_back(newSeq1590); +name = "GQY1XT001C80S1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1591(name, align); +seqs.push_back(newSeq1591); +name = "GQY1XT001C7PAI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1592(name, align); +seqs.push_back(newSeq1592); +name = "GQY1XT001C61J8"; +align = "C-G--T-T--GA-A-A-C-TGG-G--AG-C-C-T--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CGG-----G-A-C-T-G-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1593(name, align); +seqs.push_back(newSeq1593); +name = "GQY1XT001C5P4N"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1594(name, align); +seqs.push_back(newSeq1594); +name = "GQY1XT001C5MQ7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-T-GG-A-ATG-C-G-T-G-GT-GT-A-G-TGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1595(name, align); +seqs.push_back(newSeq1595); +name = "GQY1XT001C4S0G"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1596(name, align); +seqs.push_back(newSeq1596); +name = "GQY1XT001C2WHP"; +align = "T-T--T-G--G--A-A-C-T-G-T--TC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-G-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-C-GT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--A-G-G-C-C--C---T----AT-CC----G-G-G-G-C-T-T-A-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1597(name, align); +seqs.push_back(newSeq1597); +name = "GQY1XT001C2KSO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1598(name, align); +seqs.push_back(newSeq1598); +name = "GQY1XT001C23JD"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1599(name, align); +seqs.push_back(newSeq1599); +name = "GQY1XT001C1L1B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G---T--G-G-G-G-G--G-------TCT-GAC-----C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1600(name, align); +seqs.push_back(newSeq1600); +name = "GQY1XT001C1CJH"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1601(name, align); +seqs.push_back(newSeq1601); +name = "GQY1XT001C1A4H"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1602(name, align); +seqs.push_back(newSeq1602); +name = "GQY1XT001C18EI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-GAG-G-T--A--------TT-GA------C-C-C-CTT-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1603(name, align); +seqs.push_back(newSeq1603); +name = "GQY1XT001C0EIP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1604(name, align); +seqs.push_back(newSeq1604); +name = "GQY1XT001C054B"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1605(name, align); +seqs.push_back(newSeq1605); +name = "GQY1XT001C02H7"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1606(name, align); +seqs.push_back(newSeq1606); +name = "GQY1XT001C01OE"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1607(name, align); +seqs.push_back(newSeq1607); +name = "GQY1XT001BZL9H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-A--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1608(name, align); +seqs.push_back(newSeq1608); +name = "GQY1XT001BYOHC"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1609(name, align); +seqs.push_back(newSeq1609); +name = "GQY1XT001BY7Q5"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GACC------C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1610(name, align); +seqs.push_back(newSeq1610); +name = "GQY1XT001BY4XC"; +align = "A-T--C-A--G--A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG--A-G-A-G-G-A-G--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGC-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-C--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1611(name, align); +seqs.push_back(newSeq1611); +name = "GQY1XT001BY2VC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-ACGG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1612(name, align); +seqs.push_back(newSeq1612); +name = "GQY1XT001BWH5Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------GT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1613(name, align); +seqs.push_back(newSeq1613); +name = "GQY1XT001BW5LP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1614(name, align); +seqs.push_back(newSeq1614); +name = "GQY1XT001BW0GJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TGCC-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1615(name, align); +seqs.push_back(newSeq1615); +name = "GQY1XT001BVJKI"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA--A----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1616(name, align); +seqs.push_back(newSeq1616); +name = "GQY1XT001BVJ8N"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GACC------C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1617(name, align); +seqs.push_back(newSeq1617); +name = "GQY1XT001BVATR"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1618(name, align); +seqs.push_back(newSeq1618); +name = "GQY1XT001BV86B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATG-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1619(name, align); +seqs.push_back(newSeq1619); +name = "GQY1XT001BUYF3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAGCC-TT-C--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1620(name, align); +seqs.push_back(newSeq1620); +name = "GQY1XT001BUUF4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-G-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CA-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1621(name, align); +seqs.push_back(newSeq1621); +name = "GQY1XT001BTLTU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1622(name, align); +seqs.push_back(newSeq1622); +name = "GQY1XT001BT9DZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1623(name, align); +seqs.push_back(newSeq1623); +name = "GQY1XT001BSGSM"; +align = "T-T--T-T--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA---G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1624(name, align); +seqs.push_back(newSeq1624); +name = "GQY1XT001BRS3S"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1625(name, align); +seqs.push_back(newSeq1625); +name = "GQY1XT001BRN8Y"; +align = "T-T--T-T--GA-A-A-C-T-G-C--AG-A-G-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq1626(name, align); +seqs.push_back(newSeq1626); +name = "GQY1XT001BRIHM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-GCG-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1627(name, align); +seqs.push_back(newSeq1627); +name = "GQY1XT001BRBY0"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1628(name, align); +seqs.push_back(newSeq1628); +name = "GQY1XT001BRB2B"; +align = "T-T--T-T--GG-A-A-C-T-G-C--CC-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1629(name, align); +seqs.push_back(newSeq1629); +name = "GQY1XT001BR3TH"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1630(name, align); +seqs.push_back(newSeq1630); +name = "GQY1XT001BPB9Y"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-TCG--G-G-G-G-T--T---C----AA-G-----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1631(name, align); +seqs.push_back(newSeq1631); +name = "GQY1XT001BP0GH"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----CA-AG----A-A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1632(name, align); +seqs.push_back(newSeq1632); +name = "GQY1XT001BOZ60"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA--A----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACCGT-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1633(name, align); +seqs.push_back(newSeq1633); +name = "GQY1XT001BOTKM"; +align = "C-G----T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-A-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1634(name, align); +seqs.push_back(newSeq1634); +name = "GQY1XT001BOCH0"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC---AAACA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A----------CCG-AC-GG-----T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1635(name, align); +seqs.push_back(newSeq1635); +name = "GQY1XT001BO5AY"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1636(name, align); +seqs.push_back(newSeq1636); +name = "GQY1XT001BO26H"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-GG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1637(name, align); +seqs.push_back(newSeq1637); +name = "GQY1XT001BO0VB"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----GAC-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1638(name, align); +seqs.push_back(newSeq1638); +name = "GQY1XT001BMANE"; +align = "C-G--T-T--GA-A-A-C-G-G-G--AG---C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1639(name, align); +seqs.push_back(newSeq1639); +name = "GQY1XT001BJW91"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-A-G-C--C-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1640(name, align); +seqs.push_back(newSeq1640); +name = "GQY1XT001BJ5VY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1641(name, align); +seqs.push_back(newSeq1641); +name = "GQY1XT001BIQ0Y"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1642(name, align); +seqs.push_back(newSeq1642); +name = "GQY1XT001BI1VW"; +align = "A----T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1643(name, align); +seqs.push_back(newSeq1643); +name = "GQY1XT001BI0RV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1644(name, align); +seqs.push_back(newSeq1644); +name = "GQY1XT001BHY85"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1645(name, align); +seqs.push_back(newSeq1645); +name = "GQY1XT001BHU11"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1646(name, align); +seqs.push_back(newSeq1646); +name = "GQY1XT001BHQEM"; +align = "T-C--T-G--GA-A-A-C-T-G-TA-AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1647(name, align); +seqs.push_back(newSeq1647); +name = "GQY1XT001BHK64"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1648(name, align); +seqs.push_back(newSeq1648); +name = "GQY1XT001BH4GI"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1649(name, align); +seqs.push_back(newSeq1649); +name = "GQY1XT001BGQGA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1650(name, align); +seqs.push_back(newSeq1650); +name = "GQY1XT001BG448"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1651(name, align); +seqs.push_back(newSeq1651); +name = "GQY1XT001BFPNU"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAAGG-CGG-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1652(name, align); +seqs.push_back(newSeq1652); +name = "GQY1XT001BEKGR"; +align = "C-G--T-T-GAA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1653(name, align); +seqs.push_back(newSeq1653); +name = "GQY1XT001BCOC6"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-TCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1654(name, align); +seqs.push_back(newSeq1654); +name = "GQY1XT001BC1WQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-GTT-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1655(name, align); +seqs.push_back(newSeq1655); +name = "GQY1XT001BB3UG"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1656(name, align); +seqs.push_back(newSeq1656); +name = "GQY1XT001B8ZUW"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G-AGGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1657(name, align); +seqs.push_back(newSeq1657); +name = "GQY1XT001B899B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTG-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1658(name, align); +seqs.push_back(newSeq1658); +name = "GQY1XT001B874Y"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA--C-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGAATGAA"; +Sequence newSeq1659(name, align); +seqs.push_back(newSeq1659); +name = "GQY1XT001B81VY"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1660(name, align); +seqs.push_back(newSeq1660); +name = "GQY1XT001B7U5I"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G----G---G----CA-AA----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1661(name, align); +seqs.push_back(newSeq1661); +name = "GQY1XT001B7CX2"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1662(name, align); +seqs.push_back(newSeq1662); +name = "GQY1XT001B6Y9C"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1663(name, align); +seqs.push_back(newSeq1663); +name = "GQY1XT001B6PJY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTT-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TA-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1664(name, align); +seqs.push_back(newSeq1664); +name = "GQY1XT001B5Y52"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-GTG-G-G--T-------ATG-GA------C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1665(name, align); +seqs.push_back(newSeq1665); +name = "GQY1XT001B5VPJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1666(name, align); +seqs.push_back(newSeq1666); +name = "GQY1XT001B5S1X"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1667(name, align); +seqs.push_back(newSeq1667); +name = "GQY1XT001B5GOX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1668(name, align); +seqs.push_back(newSeq1668); +name = "GQY1XT001B4XAQ"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA---G-G-G---C--AG-G-CG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G---G-G--G---C----AG-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1669(name, align); +seqs.push_back(newSeq1669); +name = "GQY1XT001B4D1T"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1670(name, align); +seqs.push_back(newSeq1670); +name = "GQY1XT001B4056"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C------G-G-G--A--------A--A-----------C-----C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq1671(name, align); +seqs.push_back(newSeq1671); +name = "GQY1XT001B3J69"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1672(name, align); +seqs.push_back(newSeq1672); +name = "GQY1XT001B2Z07"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-GTCCGG-T-C-C-G-----------ATTG-GGG---------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1673(name, align); +seqs.push_back(newSeq1673); +name = "GQY1XT001B2UVD"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1674(name, align); +seqs.push_back(newSeq1674); +name = "GQY1XT001B264Y"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1675(name, align); +seqs.push_back(newSeq1675); +name = "GQY1XT001B0B7S"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1676(name, align); +seqs.push_back(newSeq1676); +name = "GQY1XT001B02KN"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1677(name, align); +seqs.push_back(newSeq1677); +name = "GQY1XT001AZEJX"; +align = "T-T--T-T--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TA-GA----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1678(name, align); +seqs.push_back(newSeq1678); +name = "GQY1XT001AZ91Q"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1679(name, align); +seqs.push_back(newSeq1679); +name = "GQY1XT001AXWID"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1680(name, align); +seqs.push_back(newSeq1680); +name = "GQY1XT001AW4XW"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-CT-T-G-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-TC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1681(name, align); +seqs.push_back(newSeq1681); +name = "GQY1XT001AV5RM"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1682(name, align); +seqs.push_back(newSeq1682); +name = "GQY1XT001AUZKM"; +align = "C-G--T-T--GA-A-A-C-T-G-G---C-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1683(name, align); +seqs.push_back(newSeq1683); +name = "GQY1XT001AUA36"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1684(name, align); +seqs.push_back(newSeq1684); +name = "GQY1XT001AU7GQ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1685(name, align); +seqs.push_back(newSeq1685); +name = "GQY1XT001AU0ZO"; +align = "A-T--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1686(name, align); +seqs.push_back(newSeq1686); +name = "GQY1XT001AU0YX"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1687(name, align); +seqs.push_back(newSeq1687); +name = "GQY1XT001ATICR"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G---G-A--G---C----AA-A-----G-C-T---T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1688(name, align); +seqs.push_back(newSeq1688); +name = "GQY1XT001ATCH2"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-CGG-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G---G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GAG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1689(name, align); +seqs.push_back(newSeq1689); +name = "GQY1XT001AT098"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1690(name, align); +seqs.push_back(newSeq1690); +name = "GQY1XT001ASHNW"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1691(name, align); +seqs.push_back(newSeq1691); +name = "GQY1XT001AQAE2"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TA-GA----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1692(name, align); +seqs.push_back(newSeq1692); +name = "GQY1XT001APT2N"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1693(name, align); +seqs.push_back(newSeq1693); +name = "GQY1XT001APR6R"; +align = "A-T--T-T--GA-A-A-C-G-T-G--CC-AGG-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-AACC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA-C-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1694(name, align); +seqs.push_back(newSeq1694); +name = "GQY1XT001APLM5"; +align = "G-T--T-T--GA-A-A-C-T-G-T--GA-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1695(name, align); +seqs.push_back(newSeq1695); +name = "GQY1XT001AP3ZY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1696(name, align); +seqs.push_back(newSeq1696); +name = "GQY1XT001AOT7K"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-TAA-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1697(name, align); +seqs.push_back(newSeq1697); +name = "GQY1XT001AOB8V"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-TCGG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1698(name, align); +seqs.push_back(newSeq1698); +name = "GQY1XT001AO39T"; +align = "C-G--T-T--GA-A-A-C-T-A-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1699(name, align); +seqs.push_back(newSeq1699); +name = "GQY1XT001ANM2O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A--------GA-AT------G-ATCCC-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1700(name, align); +seqs.push_back(newSeq1700); +name = "GQY1XT001ANEPB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1701(name, align); +seqs.push_back(newSeq1701); +name = "GQY1XT001AN52Q"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C--AAGGTTGAA"; +Sequence newSeq1702(name, align); +seqs.push_back(newSeq1702); +name = "GQY1XT001AMT3B"; +align = "C-A--T-T-GAA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C---T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1703(name, align); +seqs.push_back(newSeq1703); +name = "GQY1XT001AMFIX"; +align = "A-C--T-G--AG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-G--A---C---ATA-A-----G-T-T-T-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1704(name, align); +seqs.push_back(newSeq1704); +name = "GQY1XT001ALORM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAGTGGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1705(name, align); +seqs.push_back(newSeq1705); +name = "GQY1XT001ALJR9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1706(name, align); +seqs.push_back(newSeq1706); +name = "GQY1XT001AL7YW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1707(name, align); +seqs.push_back(newSeq1707); +name = "GQY1XT001AKDWB"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C---G----AT-TG----G-G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1708(name, align); +seqs.push_back(newSeq1708); +name = "GQY1XT001AJW7Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1709(name, align); +seqs.push_back(newSeq1709); +name = "GQY1XT001AJMTR"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G----G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq1710(name, align); +seqs.push_back(newSeq1710); +name = "GQY1XT001AJCQ5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1711(name, align); +seqs.push_back(newSeq1711); +name = "GQY1XT001AJ4TJ"; +align = "T-T--T-G--GA-A-A-CTT-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-C-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1712(name, align); +seqs.push_back(newSeq1712); +name = "GQY1XT001AI9J5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1713(name, align); +seqs.push_back(newSeq1713); +name = "GQY1XT001AGTZA"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1714(name, align); +seqs.push_back(newSeq1714); +name = "GQY1XT001AFNJT"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1715(name, align); +seqs.push_back(newSeq1715); +name = "GQY1XT001AFCLT"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1716(name, align); +seqs.push_back(newSeq1716); +name = "GQY1XT001A9Q52"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AT-G-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AA----G-C-T-T-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1717(name, align); +seqs.push_back(newSeq1717); +name = "GQY1XT001A9KYL"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1718(name, align); +seqs.push_back(newSeq1718); +name = "GQY1XT001A9094"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1719(name, align); +seqs.push_back(newSeq1719); +name = "GQY1XT001A8IDN"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-CG-G-T-G-G----G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1720(name, align); +seqs.push_back(newSeq1720); +name = "GQY1XT001A8AXM"; +align = "C----T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-ATAAG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1721(name, align); +seqs.push_back(newSeq1721); +name = "GQY1XT001A7E5Q"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1722(name, align); +seqs.push_back(newSeq1722); +name = "GQY1XT001A6E93"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1723(name, align); +seqs.push_back(newSeq1723); +name = "GQY1XT001A6BRC"; +align = "G-C--C-C--CG-A-A-C-T-G-T--GA-G-T-C--T-C-G-A-G-T-G-T-GG-TA-G-G-G-G-A-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-CT-T--CTGG-GC-CA-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T------C-G-G-G-----------A---A------------A-C-C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq1724(name, align); +seqs.push_back(newSeq1724); +name = "GQY1XT001A5J2H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-C-----G-G-A-CGC-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1725(name, align); +seqs.push_back(newSeq1725); +name = "GQY1XT001A59OZ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GT-CG-A-T-ACT--GACA-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCC-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-T--G-G-T-G-A--G---------A-A---------T-C-A-------G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-TA-C-G-C-A-AGTATGAA"; +Sequence newSeq1726(name, align); +seqs.push_back(newSeq1726); +name = "GQY1XT001A4Q0L"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-T-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1727(name, align); +seqs.push_back(newSeq1727); +name = "GQY1XT001A3WVS"; +align = "T-T--T-T--GG-A-A-C-T-G-C--CC-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-A-G--C---G----AT-A-----G-C-C---T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1728(name, align); +seqs.push_back(newSeq1728); +name = "GQY1XT001A3WQR"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGGG"; +Sequence newSeq1729(name, align); +seqs.push_back(newSeq1729); +name = "GQY1XT001A3TQ3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1730(name, align); +seqs.push_back(newSeq1730); +name = "GQY1XT001A2QK9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1731(name, align); +seqs.push_back(newSeq1731); +name = "GQY1XT001A1SOP"; +align = "CAT--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1732(name, align); +seqs.push_back(newSeq1732); +name = "GQY1XT001A1ONR"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1733(name, align); +seqs.push_back(newSeq1733); +name = "GQY1XT001A1A4Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1734(name, align); +seqs.push_back(newSeq1734); +name = "GQY1XT001A12RU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1735(name, align); +seqs.push_back(newSeq1735); +name = "GQY1XT001EVHT3"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1736(name, align); +seqs.push_back(newSeq1736); +name = "GQY1XT001BC1OQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1737(name, align); +seqs.push_back(newSeq1737); +name = "GQY1XT001CV3PG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1738(name, align); +seqs.push_back(newSeq1738); +name = "GQY1XT001CKP7A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1739(name, align); +seqs.push_back(newSeq1739); +name = "GQY1XT001A4XF1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1740(name, align); +seqs.push_back(newSeq1740); +name = "GQY1XT001CBEPN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1741(name, align); +seqs.push_back(newSeq1741); +name = "GQY1XT001CVFWB"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1742(name, align); +seqs.push_back(newSeq1742); +name = "GQY1XT001CA4CP"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1743(name, align); +seqs.push_back(newSeq1743); +name = "GQY1XT001BYO88"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----G-A-C-TGC-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1744(name, align); +seqs.push_back(newSeq1744); +name = "GQY1XT001BQZ93"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1745(name, align); +seqs.push_back(newSeq1745); +name = "GQY1XT001BJD55"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1746(name, align); +seqs.push_back(newSeq1746); +name = "GQY1XT001B5TIJ"; +align = "A-A--C-T--AA-A-A-C-T-G-A--AT-T-T-C--T-T-G-A-G-T-G-C-GG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-A-A--T-------ATT-AA------G-T-T-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1747(name, align); +seqs.push_back(newSeq1747); +name = "GQY1XT001AVQRK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1748(name, align); +seqs.push_back(newSeq1748); +name = "GQY1XT001AV8ZM"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1749(name, align); +seqs.push_back(newSeq1749); +name = "GQY1XT001EROXS"; +align = "T-T--T-T--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C---AGA-G-----A-C-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1750(name, align); +seqs.push_back(newSeq1750); +name = "GQY1XT001EJWHQ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1751(name, align); +seqs.push_back(newSeq1751); +name = "GQY1XT001EJN8I"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----AT-AA----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1752(name, align); +seqs.push_back(newSeq1752); +name = "GQY1XT001EJGNG"; +align = "G-T--T-C--AA-A-A-C-T-G-C--AG-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-A-G----------A-T-CA-AA-----C-T-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1753(name, align); +seqs.push_back(newSeq1753); +name = "GQY1XT001EFJ4B"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----A---C----CG-AC----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1754(name, align); +seqs.push_back(newSeq1754); +name = "GQY1XT001ECB3X"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T----G---G----CA-AA----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1755(name, align); +seqs.push_back(newSeq1755); +name = "GQY1XT001EAC3N"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1756(name, align); +seqs.push_back(newSeq1756); +name = "GQY1XT001E0PCI"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1757(name, align); +seqs.push_back(newSeq1757); +name = "GQY1XT001DR760"; +align = "A-A--C-C--AA-A-A-C-T-A-T--TA-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-GTG-G-G--T-------ATG-GA------C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1758(name, align); +seqs.push_back(newSeq1758); +name = "GQY1XT001D9PSL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-A-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1759(name, align); +seqs.push_back(newSeq1759); +name = "GQY1XT001D9LQM"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1760(name, align); +seqs.push_back(newSeq1760); +name = "GQY1XT001D0BXA"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-A-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1761(name, align); +seqs.push_back(newSeq1761); +name = "GQY1XT001CSFK4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1762(name, align); +seqs.push_back(newSeq1762); +name = "GQY1XT001CS9RH"; +align = "C-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq1763(name, align); +seqs.push_back(newSeq1763); +name = "GQY1XT001CNG65"; +align = "T-C--T-T--GA-A-A-C-T-G-G--CA-G-G-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G----TA--C----AG-AA----G-T-A-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1764(name, align); +seqs.push_back(newSeq1764); +name = "GQY1XT001C3Y4F"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1765(name, align); +seqs.push_back(newSeq1765); +name = "GQY1XT001C20JS"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-TAG--G-G-G-GT----------ATTA-AGC---------C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1766(name, align); +seqs.push_back(newSeq1766); +name = "GQY1XT001BXN5D"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1767(name, align); +seqs.push_back(newSeq1767); +name = "GQY1XT001BVPBJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1768(name, align); +seqs.push_back(newSeq1768); +name = "GQY1XT001BHQ0I"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1769(name, align); +seqs.push_back(newSeq1769); +name = "GQY1XT001BD68A"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G---G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-C-G--C---C----AT-A-----G-G-C-G-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1770(name, align); +seqs.push_back(newSeq1770); +name = "GQY1XT001BD5WD"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1771(name, align); +seqs.push_back(newSeq1771); +name = "GQY1XT001BAM0T"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1772(name, align); +seqs.push_back(newSeq1772); +name = "GQY1XT001B1Z38"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CA-A-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA--A----G-C-T-T-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1773(name, align); +seqs.push_back(newSeq1773); +name = "GQY1XT001AHFN5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1774(name, align); +seqs.push_back(newSeq1774); +name = "GQY1XT001A96BG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1775(name, align); +seqs.push_back(newSeq1775); +name = "GQY1XT001A37W3"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1776(name, align); +seqs.push_back(newSeq1776); +name = "GQY1XT001EZSGA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1777(name, align); +seqs.push_back(newSeq1777); +name = "GQY1XT001EXW1N"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CA-G-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1778(name, align); +seqs.push_back(newSeq1778); +name = "GQY1XT001EXH2J"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1779(name, align); +seqs.push_back(newSeq1779); +name = "GQY1XT001EXGNL"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA--A----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1780(name, align); +seqs.push_back(newSeq1780); +name = "GQY1XT001EX06G"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1781(name, align); +seqs.push_back(newSeq1781); +name = "GQY1XT001EWF9Y"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1782(name, align); +seqs.push_back(newSeq1782); +name = "GQY1XT001EW08O"; +align = "C-G--T-T--GA-A-A-C-G-G-T--TT-TCGTC--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1783(name, align); +seqs.push_back(newSeq1783); +name = "GQY1XT001EVBLO"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----GAC-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1784(name, align); +seqs.push_back(newSeq1784); +name = "GQY1XT001EUDD8"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1785(name, align); +seqs.push_back(newSeq1785); +name = "GQY1XT001ETQFN"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA---G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1786(name, align); +seqs.push_back(newSeq1786); +name = "GQY1XT001ESRP4"; +align = "A-T--A-A--GA-A-A-C-T-G-T--CG-G-A-C--T-T-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C---A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GT--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--G-G-C-A-A-----------GG-AA--------T-T-G-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1787(name, align); +seqs.push_back(newSeq1787); +name = "GQY1XT001ER70P"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1788(name, align); +seqs.push_back(newSeq1788); +name = "GQY1XT001ER69B"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-TCG--G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1789(name, align); +seqs.push_back(newSeq1789); +name = "GQY1XT001EQC7D"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G---G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1790(name, align); +seqs.push_back(newSeq1790); +name = "GQY1XT001EP7ZP"; +align = "A-T--A-A--GA-A-A-C-T-G-T--CG-G-A-C--T-T-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C---A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-CT-T-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-T-CCACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1791(name, align); +seqs.push_back(newSeq1791); +name = "GQY1XT001EOV2A"; +align = "C-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----GTG-C-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1792(name, align); +seqs.push_back(newSeq1792); +name = "GQY1XT001EOFW7"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CC-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1793(name, align); +seqs.push_back(newSeq1793); +name = "GQY1XT001ENVYC"; +align = "A-C--T-T--GA-A-A-C-T-G-G--GT-G-T-C--T-T-G-A-G-G-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-CCT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1794(name, align); +seqs.push_back(newSeq1794); +name = "GQY1XT001EMTPI"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1795(name, align); +seqs.push_back(newSeq1795); +name = "GQY1XT001EMGX3"; +align = "A-T--C-T--GA-T-A-C-T-G-G--CA-A-G-C--T-T-G-A-G-T-C-T-CG-TA-G-A-G-G-G-G--GG-T-AG-A-ATT-C-C-A-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-T-G-G-AG-G-A-AT-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CC-C--CTGG-AC-GA-A-G-ACT--GACG-CTC-A-GG--T-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TC--GA-C-T-T-G-GA-G-G-T--T-G-T-G-C--C-------CTT-GA------G-G-C-G-T-G-G-C-T-T-C-C--GG--A-G-C-T-AA-C-G-C-G-T-TAA-G-TCG-ACC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTAAA"; +Sequence newSeq1796(name, align); +seqs.push_back(newSeq1796); +name = "GQY1XT001EM07L"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1797(name, align); +seqs.push_back(newSeq1797); +name = "GQY1XT001ELLXI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1798(name, align); +seqs.push_back(newSeq1798); +name = "GQY1XT001ELBS5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1799(name, align); +seqs.push_back(newSeq1799); +name = "GQY1XT001EL25N"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---C----GA--C----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1800(name, align); +seqs.push_back(newSeq1800); +name = "GQY1XT001EKYBD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-G-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1801(name, align); +seqs.push_back(newSeq1801); +name = "GQY1XT001EK5N6"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1802(name, align); +seqs.push_back(newSeq1802); +name = "GQY1XT001EJPJY"; +align = "T-T--T-G-GAA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1803(name, align); +seqs.push_back(newSeq1803); +name = "GQY1XT001EJLS1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1804(name, align); +seqs.push_back(newSeq1804); +name = "GQY1XT001EI6M7"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CCGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA--A----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1805(name, align); +seqs.push_back(newSeq1805); +name = "GQY1XT001EI1UI"; +align = "A-C--T-G--AG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-G-C-A--T---CG---AG-G----AT-G-G-C-----C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1806(name, align); +seqs.push_back(newSeq1806); +name = "GQY1XT001EH7V8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-TG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1807(name, align); +seqs.push_back(newSeq1807); +name = "GQY1XT001EG39J"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AC-A-G-C--T-T-G-A-T-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1808(name, align); +seqs.push_back(newSeq1808); +name = "GQY1XT001EFORW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---C----A--AG----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1809(name, align); +seqs.push_back(newSeq1809); +name = "GQY1XT001EFMJE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1810(name, align); +seqs.push_back(newSeq1810); +name = "GQY1XT001EF6C6"; +align = "T-T--T-G--GT-A-A-A-C-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1811(name, align); +seqs.push_back(newSeq1811); +name = "GQY1XT001EEYEJ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTGG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-CA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1812(name, align); +seqs.push_back(newSeq1812); +name = "GQY1XT001EEGJS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1813(name, align); +seqs.push_back(newSeq1813); +name = "GQY1XT001EDXO4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GG-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1814(name, align); +seqs.push_back(newSeq1814); +name = "GQY1XT001ECYZV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-G-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AC-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1815(name, align); +seqs.push_back(newSeq1815); +name = "GQY1XT001ECO3L"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--A-G-G-C-C--C---T----AT-CC----G-G-G-G-C-T-T-A-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1816(name, align); +seqs.push_back(newSeq1816); +name = "GQY1XT001EC680"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1817(name, align); +seqs.push_back(newSeq1817); +name = "GQY1XT001EBV6C"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1818(name, align); +seqs.push_back(newSeq1818); +name = "GQY1XT001EAZSN"; +align = "T-T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-GTG-G--C-------AAA-G-------C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1819(name, align); +seqs.push_back(newSeq1819); +name = "GQY1XT001EAZPN"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1820(name, align); +seqs.push_back(newSeq1820); +name = "GQY1XT001EAXU4"; +align = "T-T--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1821(name, align); +seqs.push_back(newSeq1821); +name = "GQY1XT001EA66J"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-T--A---C----GA-A-----G-T-A-C-T-G-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1822(name, align); +seqs.push_back(newSeq1822); +name = "GQY1XT001EA1KP"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CAG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-A-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1823(name, align); +seqs.push_back(newSeq1823); +name = "GQY1XT001E1UQP"; +align = "C-G----T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1824(name, align); +seqs.push_back(newSeq1824); +name = "GQY1XT001E18R9"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1825(name, align); +seqs.push_back(newSeq1825); +name = "GQY1XT001E11J6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1826(name, align); +seqs.push_back(newSeq1826); +name = "GQY1XT001DZFOE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1827(name, align); +seqs.push_back(newSeq1827); +name = "GQY1XT001DZ7T4"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G---G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---A----TA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1828(name, align); +seqs.push_back(newSeq1828); +name = "GQY1XT001DYMWW"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1829(name, align); +seqs.push_back(newSeq1829); +name = "GQY1XT001DXVZE"; +align = "ATT--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T-----------CTACGG-------G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1830(name, align); +seqs.push_back(newSeq1830); +name = "GQY1XT001DXOHI"; +align = "A-C--T-G--AG-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-CG-G-G-C-A-T--C---A----AG-G-----A-T-G---G-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-TGG-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1831(name, align); +seqs.push_back(newSeq1831); +name = "GQY1XT001DXF3E"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-C----A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1832(name, align); +seqs.push_back(newSeq1832); +name = "GQY1XT001DX6EC"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1833(name, align); +seqs.push_back(newSeq1833); +name = "GQY1XT001DWP39"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1834(name, align); +seqs.push_back(newSeq1834); +name = "GQY1XT001DVUS5"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G-C--G-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GGCG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1835(name, align); +seqs.push_back(newSeq1835); +name = "GQY1XT001DRVRB"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G--------G----TA-AG----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1836(name, align); +seqs.push_back(newSeq1836); +name = "GQY1XT001DRPT7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--CAA-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGAG-----TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1837(name, align); +seqs.push_back(newSeq1837); +name = "GQY1XT001DR86K"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-AG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------AAT-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1838(name, align); +seqs.push_back(newSeq1838); +name = "GQY1XT001DQ0O7"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq1839(name, align); +seqs.push_back(newSeq1839); +name = "GQY1XT001DPPPW"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1840(name, align); +seqs.push_back(newSeq1840); +name = "GQY1XT001DPO3P"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-CG-G-G-G-G-T--T---A----AC-A-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1841(name, align); +seqs.push_back(newSeq1841); +name = "GQY1XT001DP5ZJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T-ATTC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1842(name, align); +seqs.push_back(newSeq1842); +name = "GQY1XT001DOST9"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1843(name, align); +seqs.push_back(newSeq1843); +name = "GQY1XT001DONIK"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1844(name, align); +seqs.push_back(newSeq1844); +name = "GQY1XT001DOCNR"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-TG-G-G-G-G-A--C---C----AA-G-----G-T-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1845(name, align); +seqs.push_back(newSeq1845); +name = "GQY1XT001DO0R3"; +align = "G-T--T-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AC-CT-G------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT-CCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1846(name, align); +seqs.push_back(newSeq1846); +name = "GQY1XT001DNSLC"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA--G----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1847(name, align); +seqs.push_back(newSeq1847); +name = "GQY1XT001DMF03"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1848(name, align); +seqs.push_back(newSeq1848); +name = "GQY1XT001DLAEE"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1849(name, align); +seqs.push_back(newSeq1849); +name = "GQY1XT001DL079"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1850(name, align); +seqs.push_back(newSeq1850); +name = "GQY1XT001DKNZ2"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--A---C----TG-A-----C-C-C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1851(name, align); +seqs.push_back(newSeq1851); +name = "GQY1XT001DKNON"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-CG--A-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1852(name, align); +seqs.push_back(newSeq1852); +name = "GQY1XT001DJXKJ"; +align = "T-A--G-C--TA-A-A-C-T-G-C--TA-A-G-C--T-C-G-A-G-A-C-C-GT-TA-G-G-G-G-T-A--AC-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-GAGT-G-AAA--TC-C-GT-AG--AT-A-TT-A-G-A-AG-GA--AC-A-CC-GA-T-A-GC-GTA-GG-CAG-G-TT-A--CTGG-GA-CG-G-T-TCC--GACA-CTA-A-GG--C-A-CG-AAA-G-C-G-TAGG-G--AGC-A-AA-CG-GG-ATTAG-ATA-CCCC-GGTA-GT-C-TA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-CA-G-T-T--T-T-G-G-G---------TATC-GA-CC-----C-C-T-A-G-A-G-T-T-G-C--GA--A-GC--T-AA-C-G-C-G-T-TAA-G-TAT-CCC-ACC-T-G-TGT-AG-TA--CG-AT-C-G-C-A-AGATTAAA"; +Sequence newSeq1853(name, align); +seqs.push_back(newSeq1853); +name = "GQY1XT001DINZJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G--------CA-AA----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1854(name, align); +seqs.push_back(newSeq1854); +name = "GQY1XT001DHTB1"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-GAG-G-G--T---T----TC-C-----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1855(name, align); +seqs.push_back(newSeq1855); +name = "GQY1XT001DH92M"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1856(name, align); +seqs.push_back(newSeq1856); +name = "GQY1XT001DH8CG"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1857(name, align); +seqs.push_back(newSeq1857); +name = "GQY1XT001DF3CS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-AG-TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-TGCC-GAA-GG-CAG-C-AT-A--CCCG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAATGGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1858(name, align); +seqs.push_back(newSeq1858); +name = "GQY1XT001DEFEX"; +align = "C-G--T-G--GA-A-A-C-C-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-A-T--CG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-GA-T--CTGG-GC-TG-C-A-ACT--GACG-CTC-A-GT--C-C-CG-AAA--GC-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-AA--------A-C-C-T-C-A-G-T-G-C-T--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TAC-TCC-GCC-T-GAGGT-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1859(name, align); +seqs.push_back(newSeq1859); +name = "GQY1XT001DE9CC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1860(name, align); +seqs.push_back(newSeq1860); +name = "GQY1XT001DDNR5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1861(name, align); +seqs.push_back(newSeq1861); +name = "GQY1XT001DDE64"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-GTA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1862(name, align); +seqs.push_back(newSeq1862); +name = "GQY1XT001DDALJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------AAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1863(name, align); +seqs.push_back(newSeq1863); +name = "GQY1XT001DCVNJ"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA--A----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1864(name, align); +seqs.push_back(newSeq1864); +name = "GQY1XT001DCQHM"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1865(name, align); +seqs.push_back(newSeq1865); +name = "GQY1XT001DCI72"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AG----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1866(name, align); +seqs.push_back(newSeq1866); +name = "GQY1XT001DCCEH"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1867(name, align); +seqs.push_back(newSeq1867); +name = "GQY1XT001DC1XU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-GTGGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1868(name, align); +seqs.push_back(newSeq1868); +name = "GQY1XT001DAEXS"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATTCC-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1869(name, align); +seqs.push_back(newSeq1869); +name = "GQY1XT001D9C0M"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1870(name, align); +seqs.push_back(newSeq1870); +name = "GQY1XT001D9196"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GAG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1871(name, align); +seqs.push_back(newSeq1871); +name = "GQY1XT001D768K"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1872(name, align); +seqs.push_back(newSeq1872); +name = "GQY1XT001D73IR"; +align = "A-C--T-T--GA-A-A-C-T-G-G--GT-G-T-C--T-T-G-A-G-G-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-CCT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CG-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G---------TATC-GA-CT-----C-C-T-T-C-T-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GT-C-G-C-A-AGACTAAA"; +Sequence newSeq1873(name, align); +seqs.push_back(newSeq1873); +name = "GQY1XT001D6H9H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1874(name, align); +seqs.push_back(newSeq1874); +name = "GQY1XT001D61WR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1875(name, align); +seqs.push_back(newSeq1875); +name = "GQY1XT001D61AN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATCGG-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1876(name, align); +seqs.push_back(newSeq1876); +name = "GQY1XT001D5U9U"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-AG----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1877(name, align); +seqs.push_back(newSeq1877); +name = "GQY1XT001D5BKZ"; +align = "G-C--C-C--CG-A-A-C-T-G-T--GA-G-T-C--T-C-G-A-G-T-G-T-GG-TA-G-G-G-G-A-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-CT-T--CTGG-GC-CA-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-GG--CA-C-T-A-G-GT-G-T-G--G-GCGA------------CACA-GT-C----------G-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-TGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq1878(name, align); +seqs.push_back(newSeq1878); +name = "GQY1XT001D4OH9"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-G-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1879(name, align); +seqs.push_back(newSeq1879); +name = "GQY1XT001D4MLK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1880(name, align); +seqs.push_back(newSeq1880); +name = "GQY1XT001D3I8P"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1881(name, align); +seqs.push_back(newSeq1881); +name = "GQY1XT001D3A2N"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1882(name, align); +seqs.push_back(newSeq1882); +name = "GQY1XT001D39GQ"; +align = "A-T--T-G--GG-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-C-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-TG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-C-C-A--T---C----AA-G-----G-A-T-G-G-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1883(name, align); +seqs.push_back(newSeq1883); +name = "GQY1XT001D2OKK"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1884(name, align); +seqs.push_back(newSeq1884); +name = "GQY1XT001D1TL6"; +align = "T-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1885(name, align); +seqs.push_back(newSeq1885); +name = "GQY1XT001D1QQZ"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--A---C----GA-CA----G-T-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1886(name, align); +seqs.push_back(newSeq1886); +name = "GQY1XT001D1I3B"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1887(name, align); +seqs.push_back(newSeq1887); +name = "GQY1XT001D0WF6"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1888(name, align); +seqs.push_back(newSeq1888); +name = "GQY1XT001D0NMQ"; +align = "A-C--T-T--GA-A-A-C-T-G-G--GT-G-T-C--T-T-G-A-G-G-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-CCT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G----------GCC-AA-GC-----C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1889(name, align); +seqs.push_back(newSeq1889); +name = "GQY1XT001CZE5B"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TT-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-C-G--T---C----AA-A-----G-A-C-G-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1890(name, align); +seqs.push_back(newSeq1890); +name = "GQY1XT001CZ9U1"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1891(name, align); +seqs.push_back(newSeq1891); +name = "GQY1XT001CYYLW"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1892(name, align); +seqs.push_back(newSeq1892); +name = "GQY1XT001CYVZR"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---A----TG-G-----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1893(name, align); +seqs.push_back(newSeq1893); +name = "GQY1XT001CXZ3M"; +align = "C-G----T--G--A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-TGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G---G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1894(name, align); +seqs.push_back(newSeq1894); +name = "GQY1XT001CXL4B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1895(name, align); +seqs.push_back(newSeq1895); +name = "GQY1XT001CWJP3"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GACC------C-C-T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAACG-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1896(name, align); +seqs.push_back(newSeq1896); +name = "GQY1XT001CW27H"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-G-TG-G-AAT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----AT-AA----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1897(name, align); +seqs.push_back(newSeq1897); +name = "GQY1XT001CVKWG"; +align = "C-G--T-TA-GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-AGG-T-G-G-GC-GA-G-A-A-G-T-A-TGG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1898(name, align); +seqs.push_back(newSeq1898); +name = "GQY1XT001CVGUG"; +align = "ATT--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-CGG-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1899(name, align); +seqs.push_back(newSeq1899); +name = "GQY1XT001CTZ1C"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1900(name, align); +seqs.push_back(newSeq1900); +name = "GQY1XT001CS7SI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-T-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1901(name, align); +seqs.push_back(newSeq1901); +name = "GQY1XT001CS7KX"; +align = "T-T--T-G--GA-A-A-C-T-G-TA-TA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-T-A-AGAATGAA"; +Sequence newSeq1902(name, align); +seqs.push_back(newSeq1902); +name = "GQY1XT001CS736"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-AACTG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1903(name, align); +seqs.push_back(newSeq1903); +name = "GQY1XT001CRZXT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1904(name, align); +seqs.push_back(newSeq1904); +name = "GQY1XT001CRNDK"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TG--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1905(name, align); +seqs.push_back(newSeq1905); +name = "GQY1XT001CRM3D"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-T-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1906(name, align); +seqs.push_back(newSeq1906); +name = "GQY1XT001CPMSQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1907(name, align); +seqs.push_back(newSeq1907); +name = "GQY1XT001CPHCR"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G--G---C----CA-A-----G-C-C-C-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1908(name, align); +seqs.push_back(newSeq1908); +name = "GQY1XT001CN67L"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GGCG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1909(name, align); +seqs.push_back(newSeq1909); +name = "GQY1XT001CN3YQ"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-C--GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-C-A--G---C----AA-A-----G-C-T-G-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1910(name, align); +seqs.push_back(newSeq1910); +name = "GQY1XT001CMILT"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1911(name, align); +seqs.push_back(newSeq1911); +name = "GQY1XT001CLZ2E"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAAGG-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-AGG-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1912(name, align); +seqs.push_back(newSeq1912); +name = "GQY1XT001CLELR"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-C-G-G----G---C-----A-AA----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1913(name, align); +seqs.push_back(newSeq1913); +name = "GQY1XT001CKOMV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CTGG-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1914(name, align); +seqs.push_back(newSeq1914); +name = "GQY1XT001CK9DQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-GTG-G-G--C--------AA-AG------C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1915(name, align); +seqs.push_back(newSeq1915); +name = "GQY1XT001CJX38"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-GTGGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1916(name, align); +seqs.push_back(newSeq1916); +name = "GQY1XT001CIZ7Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CA-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-C-A-G-GT-G-T-C--G-G-G-TGT--C--------GA-AG------G-ACG-G-C-C-G-G-T-G-C-T--GC--A-G-C-G-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1917(name, align); +seqs.push_back(newSeq1917); +name = "GQY1XT001CIROP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1918(name, align); +seqs.push_back(newSeq1918); +name = "GQY1XT001CIP8X"; +align = "A-GT-T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1919(name, align); +seqs.push_back(newSeq1919); +name = "GQY1XT001CI21F"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AT-G-TAG--G-A-G-G-T----------ATC-GA-CT-----C-C-T-T-C-T-G-C-G-T-C--GC--A-G-T-T-AA-C-A-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1920(name, align); +seqs.push_back(newSeq1920); +name = "GQY1XT001CGPLI"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1921(name, align); +seqs.push_back(newSeq1921); +name = "GQY1XT001CFP5W"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C----ATAA-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1922(name, align); +seqs.push_back(newSeq1922); +name = "GQY1XT001CFMGK"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1923(name, align); +seqs.push_back(newSeq1923); +name = "GQY1XT001CFADH"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1924(name, align); +seqs.push_back(newSeq1924); +name = "GQY1XT001CF6LR"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AA-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1925(name, align); +seqs.push_back(newSeq1925); +name = "GQY1XT001CF37K"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1926(name, align); +seqs.push_back(newSeq1926); +name = "GQY1XT001CEXMY"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-TCCG-GTG-C-G-----------AGTG-AGC---------G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1927(name, align); +seqs.push_back(newSeq1927); +name = "GQY1XT001CC5UW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1928(name, align); +seqs.push_back(newSeq1928); +name = "GQY1XT001CBOLF"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1929(name, align); +seqs.push_back(newSeq1929); +name = "GQY1XT001CB4GZ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1930(name, align); +seqs.push_back(newSeq1930); +name = "GQY1XT001CAAJI"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1931(name, align); +seqs.push_back(newSeq1931); +name = "GQY1XT001C9V9V"; +align = "T-C--T-T--GA-A-A-C-T-G-G--CA-G-G-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-T--A---C----AG-AA----G-T-A-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1932(name, align); +seqs.push_back(newSeq1932); +name = "GQY1XT001C99RM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T--------T-T-G--C-------GA--TAT-----A-C-G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1933(name, align); +seqs.push_back(newSeq1933); +name = "GQY1XT001C8NWP"; +align = "C-GT-T-T-GAA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1934(name, align); +seqs.push_back(newSeq1934); +name = "GQY1XT001C8I85"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-TGG-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1935(name, align); +seqs.push_back(newSeq1935); +name = "GQY1XT001C7QEH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1936(name, align); +seqs.push_back(newSeq1936); +name = "GQY1XT001C6TKL"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-T-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1937(name, align); +seqs.push_back(newSeq1937); +name = "GQY1XT001C6R9H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-G--C---C----AA-G-----C-C-C-C-C-T---G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1938(name, align); +seqs.push_back(newSeq1938); +name = "GQY1XT001C5WDQ"; +align = "C-G--T-T--GA-A-A-CTT-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1939(name, align); +seqs.push_back(newSeq1939); +name = "GQY1XT001C5QY5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GT-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1940(name, align); +seqs.push_back(newSeq1940); +name = "GQY1XT001C5NG3"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1941(name, align); +seqs.push_back(newSeq1941); +name = "GQY1XT001C5M1V"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1942(name, align); +seqs.push_back(newSeq1942); +name = "GQY1XT001C5M0Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1943(name, align); +seqs.push_back(newSeq1943); +name = "GQY1XT001C5B0O"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1944(name, align); +seqs.push_back(newSeq1944); +name = "GQY1XT001C3H6L"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1945(name, align); +seqs.push_back(newSeq1945); +name = "GQY1XT001C2UBP"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1946(name, align); +seqs.push_back(newSeq1946); +name = "GQY1XT001C2PYQ"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1947(name, align); +seqs.push_back(newSeq1947); +name = "GQY1XT001C221X"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G---G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1948(name, align); +seqs.push_back(newSeq1948); +name = "GQY1XT001C1EYP"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1949(name, align); +seqs.push_back(newSeq1949); +name = "GQY1XT001C16TB"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1950(name, align); +seqs.push_back(newSeq1950); +name = "GQY1XT001C0OMN"; +align = "T-C--T-G-GAA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1951(name, align); +seqs.push_back(newSeq1951); +name = "GQY1XT001C00MG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1952(name, align); +seqs.push_back(newSeq1952); +name = "GQY1XT001BZCH8"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq1953(name, align); +seqs.push_back(newSeq1953); +name = "GQY1XT001BYU6O"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---T----AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1954(name, align); +seqs.push_back(newSeq1954); +name = "GQY1XT001BYF9U"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G---G-T-G--A---G----CA-AA----G-C-T-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1955(name, align); +seqs.push_back(newSeq1955); +name = "GQY1XT001BY8RG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1956(name, align); +seqs.push_back(newSeq1956); +name = "GQY1XT001BXWIR"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1957(name, align); +seqs.push_back(newSeq1957); +name = "GQY1XT001BXHAR"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1958(name, align); +seqs.push_back(newSeq1958); +name = "GQY1XT001BWH3N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1959(name, align); +seqs.push_back(newSeq1959); +name = "GQY1XT001BW3VD"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1960(name, align); +seqs.push_back(newSeq1960); +name = "GQY1XT001BVV4N"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G--------TT-CC----G-C-C-T-T-C-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1961(name, align); +seqs.push_back(newSeq1961); +name = "GQY1XT001BVRGQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1962(name, align); +seqs.push_back(newSeq1962); +name = "GQY1XT001BV1S2"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G---------TTTC-GA-TG-----C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1963(name, align); +seqs.push_back(newSeq1963); +name = "GQY1XT001BUHFQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1964(name, align); +seqs.push_back(newSeq1964); +name = "GQY1XT001BU854"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-G--AC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq1965(name, align); +seqs.push_back(newSeq1965); +name = "GQY1XT001BRWKV"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1966(name, align); +seqs.push_back(newSeq1966); +name = "GQY1XT001BRG77"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-CGG-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATAAAAT---------G-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-ATTAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1967(name, align); +seqs.push_back(newSeq1967); +name = "GQY1XT001BQJ6A"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-G-T--C-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1968(name, align); +seqs.push_back(newSeq1968); +name = "GQY1XT001BQJ2K"; +align = "A-G--T-T--GA-A-A-C-T-G-GC-CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAG-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1969(name, align); +seqs.push_back(newSeq1969); +name = "GQY1XT001BQH3H"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-C--GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1970(name, align); +seqs.push_back(newSeq1970); +name = "GQY1XT001BQE0T"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----AA-CG----G-A-C-C-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1971(name, align); +seqs.push_back(newSeq1971); +name = "GQY1XT001BQ1IR"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-A-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1972(name, align); +seqs.push_back(newSeq1972); +name = "GQY1XT001BPXQV"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1973(name, align); +seqs.push_back(newSeq1973); +name = "GQY1XT001BP06R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1974(name, align); +seqs.push_back(newSeq1974); +name = "GQY1XT001BOS3Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1975(name, align); +seqs.push_back(newSeq1975); +name = "GQY1XT001BKUXJ"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1976(name, align); +seqs.push_back(newSeq1976); +name = "GQY1XT001BKF8J"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1977(name, align); +seqs.push_back(newSeq1977); +name = "GQY1XT001BJBFJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-G-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--A-G-G-C-C--C---T----AT-CC----G-G-G-G-C-T-T-A-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-C-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1978(name, align); +seqs.push_back(newSeq1978); +name = "GQY1XT001BJ17T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1979(name, align); +seqs.push_back(newSeq1979); +name = "GQY1XT001BISR7"; +align = "A-T--T-G--GA-A-A-C-T-G-C--GG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G---G-G--G---C----AC-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1980(name, align); +seqs.push_back(newSeq1980); +name = "GQY1XT001BIS33"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-CT-T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1981(name, align); +seqs.push_back(newSeq1981); +name = "GQY1XT001BI6HC"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1982(name, align); +seqs.push_back(newSeq1982); +name = "GQY1XT001BH407"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1983(name, align); +seqs.push_back(newSeq1983); +name = "GQY1XT001BGM3L"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1984(name, align); +seqs.push_back(newSeq1984); +name = "GQY1XT001BGE4C"; +align = "TCT--A-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1985(name, align); +seqs.push_back(newSeq1985); +name = "GQY1XT001BFVIT"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-AGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1986(name, align); +seqs.push_back(newSeq1986); +name = "GQY1XT001BFPZ4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GT--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AAAATGAA"; +Sequence newSeq1987(name, align); +seqs.push_back(newSeq1987); +name = "GQY1XT001BFPG2"; +align = "..C--G-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-CC-G-G-G-C----C---G----AT-TG----A-G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1988(name, align); +seqs.push_back(newSeq1988); +name = "GQY1XT001BF6A3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1989(name, align); +seqs.push_back(newSeq1989); +name = "GQY1XT001BERPN"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1990(name, align); +seqs.push_back(newSeq1990); +name = "GQY1XT001BEJKR"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-TCG--G-G-G-G-A--C---C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1991(name, align); +seqs.push_back(newSeq1991); +name = "GQY1XT001BE3DR"; +align = "C-G--T-T--GA-A-A-C-T---G--AC-G-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1992(name, align); +seqs.push_back(newSeq1992); +name = "GQY1XT001BE160"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--G---T----CA-A-----G-G-C-T-C-TGC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1993(name, align); +seqs.push_back(newSeq1993); +name = "GQY1XT001BDKOG"; +align = "T-A--C-C--AA-A-A-C-T-G-T--TG-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-AG-G-G-G-G-G--T-------ATC-GA-C----T-C-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq1994(name, align); +seqs.push_back(newSeq1994); +name = "GQY1XT001BD35A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1995(name, align); +seqs.push_back(newSeq1995); +name = "GQY1XT001BCHZQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1996(name, align); +seqs.push_back(newSeq1996); +name = "GQY1XT001BB5QV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-GCC--G-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1997(name, align); +seqs.push_back(newSeq1997); +name = "GQY1XT001BB3IM"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq1998(name, align); +seqs.push_back(newSeq1998); +name = "GQY1XT001BB2I1"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CTGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq1999(name, align); +seqs.push_back(newSeq1999); +name = "GQY1XT001BAE4D"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2000(name, align); +seqs.push_back(newSeq2000); +name = "GQY1XT001B82M4"; +align = "T-T--T-T--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G-------CAC-GG------C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2001(name, align); +seqs.push_back(newSeq2001); +name = "GQY1XT001B7II3"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-AGG-GT-G-T-C--G-G-G-G-G--T---C---ATA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2002(name, align); +seqs.push_back(newSeq2002); +name = "GQY1XT001B79XZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-AATTG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2003(name, align); +seqs.push_back(newSeq2003); +name = "GQY1XT001B4KMH"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2004(name, align); +seqs.push_back(newSeq2004); +name = "GQY1XT001B4CWV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-GTT-G--G-G-G-A-G--C--------AA-AG------C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2005(name, align); +seqs.push_back(newSeq2005); +name = "GQY1XT001B3O5L"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TC-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G---G--G---T----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2006(name, align); +seqs.push_back(newSeq2006); +name = "GQY1XT001B3NK9"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--A---C----AA-A-----G-T-A-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2007(name, align); +seqs.push_back(newSeq2007); +name = "GQY1XT001B3G81"; +align = "T-T--T-A--GA-A-A-C-T-G-G--CA-A-A-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-T-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GC-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2008(name, align); +seqs.push_back(newSeq2008); +name = "GQY1XT001B3DGI"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2009(name, align); +seqs.push_back(newSeq2009); +name = "GQY1XT001B2XRI"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2010(name, align); +seqs.push_back(newSeq2010); +name = "GQY1XT001B2X2X"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACTGAC-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2011(name, align); +seqs.push_back(newSeq2011); +name = "GQY1XT001B1Q23"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2012(name, align); +seqs.push_back(newSeq2012); +name = "GQY1XT001B198G"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2013(name, align); +seqs.push_back(newSeq2013); +name = "GQY1XT001B18RP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-TCG--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2014(name, align); +seqs.push_back(newSeq2014); +name = "GQY1XT001B125S"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2015(name, align); +seqs.push_back(newSeq2015); +name = "GQY1XT001B0PAO"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2016(name, align); +seqs.push_back(newSeq2016); +name = "GQY1XT001AYZV4"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACTG-GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTAAGT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---A----TA-A-----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2017(name, align); +seqs.push_back(newSeq2017); +name = "GQY1XT001AY9X7"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2018(name, align); +seqs.push_back(newSeq2018); +name = "GQY1XT001AXWLP"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2019(name, align); +seqs.push_back(newSeq2019); +name = "GQY1XT001AVOTP"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GACCC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2020(name, align); +seqs.push_back(newSeq2020); +name = "GQY1XT001AVHY2"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G---G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A-----------GG-AA--------T-T-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2021(name, align); +seqs.push_back(newSeq2021); +name = "GQY1XT001AV0Z7"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2022(name, align); +seqs.push_back(newSeq2022); +name = "GQY1XT001AUAZ1"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-GT-G-T-C------G-G-G--------------AA------A-------C-C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAT-TCC-ACC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2023(name, align); +seqs.push_back(newSeq2023); +name = "GQY1XT001AU8BF"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-TCCG-G-G-G-G------------GAA-TGG---------C-C-C-C-T-G-G-GTG-C--CAC-A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2024(name, align); +seqs.push_back(newSeq2024); +name = "GQY1XT001ATTEW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2025(name, align); +seqs.push_back(newSeq2025); +name = "GQY1XT001ASJY7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2026(name, align); +seqs.push_back(newSeq2026); +name = "GQY1XT001ASGKK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTT-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2027(name, align); +seqs.push_back(newSeq2027); +name = "GQY1XT001ARJ5H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2028(name, align); +seqs.push_back(newSeq2028); +name = "GQY1XT001AQ6RI"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2029(name, align); +seqs.push_back(newSeq2029); +name = "GQY1XT001ANHGU"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2030(name, align); +seqs.push_back(newSeq2030); +name = "GQY1XT001ANAR9"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-G-ACT--GACG-TTG-A-TG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TG-C-C-A-G-GT-G-T-C--G-G-C-C-A--T---C----AA-G-----G-A-T-G-G-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2031(name, align); +seqs.push_back(newSeq2031); +name = "GQY1XT001AML81"; +align = "T-C--T-G--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2032(name, align); +seqs.push_back(newSeq2032); +name = "GQY1XT001AMF77"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-G-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2033(name, align); +seqs.push_back(newSeq2033); +name = "GQY1XT001ALM9Y"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AG-A-G-C--T-G-G-A-G-T-G---CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-T--A---C----GA-A-----G-T-A-C-T-G-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2034(name, align); +seqs.push_back(newSeq2034); +name = "GQY1XT001AL02A"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2035(name, align); +seqs.push_back(newSeq2035); +name = "GQY1XT001AKR2J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2036(name, align); +seqs.push_back(newSeq2036); +name = "GQY1XT001AKLZB"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2037(name, align); +seqs.push_back(newSeq2037); +name = "GQY1XT001AJQ84"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATA-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-TCC--G-G-G-G------------CTT-CGGC--------T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2038(name, align); +seqs.push_back(newSeq2038); +name = "GQY1XT001AJA87"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2039(name, align); +seqs.push_back(newSeq2039); +name = "GQY1XT001AJ9NL"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2040(name, align); +seqs.push_back(newSeq2040); +name = "GQY1XT001AH6WY"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2041(name, align); +seqs.push_back(newSeq2041); +name = "GQY1XT001AGY0S"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2042(name, align); +seqs.push_back(newSeq2042); +name = "GQY1XT001AF930"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAA-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---C----GA-CA----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2043(name, align); +seqs.push_back(newSeq2043); +name = "GQY1XT001AF1T5"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2044(name, align); +seqs.push_back(newSeq2044); +name = "GQY1XT001AEDAY"; +align = "T-T--C-T--AA-A-A-C-T-G-T--AT-G-A-C--T-T-G-A-G-T-G-C-AG-TA-G-A-G-G-T-T--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGG-C-TA-A--CTGG-AC-TG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-C--A-------CAT-AA-G----T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2045(name, align); +seqs.push_back(newSeq2045); +name = "GQY1XT001A9X7Q"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-AC-G---A----CA-G-----T-C-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2046(name, align); +seqs.push_back(newSeq2046); +name = "GQY1XT001A9EON"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-T--T-------CTA-CGG-----G-A-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2047(name, align); +seqs.push_back(newSeq2047); +name = "GQY1XT001A9C7P"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--TGCCCCG-----------AGTG-AGG---------G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2048(name, align); +seqs.push_back(newSeq2048); +name = "GQY1XT001A7UQG"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-A-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CGGG-G-G-G------------CTAGAGCC--------C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2049(name, align); +seqs.push_back(newSeq2049); +name = "GQY1XT001A7R0H"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---C---ATA-AG----G-A-C-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2050(name, align); +seqs.push_back(newSeq2050); +name = "GQY1XT001A7L8W"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2051(name, align); +seqs.push_back(newSeq2051); +name = "GQY1XT001A7C1T"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CGAAAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA-CGG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2052(name, align); +seqs.push_back(newSeq2052); +name = "GQY1XT001A5QIO"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AG-A-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--GCG-G-T-A--C---G----GA-A-----G-T-A-C-T-G-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2053(name, align); +seqs.push_back(newSeq2053); +name = "GQY1XT001A40A8"; +align = "T-T--T-T-GAA-A-A-C-T-G-T--AC-A-G-C--T-T-G-A-T-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-GA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----A--GG----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2054(name, align); +seqs.push_back(newSeq2054); +name = "GQY1XT001A3XZV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CGG-----G-A-C-T-G-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2055(name, align); +seqs.push_back(newSeq2055); +name = "GQY1XT001A38QD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-C-C--G-G-G-G-G--T---T----AACA-----G-A-C-C-C-C-C-G-G-T-G-C-C--GA--A-G-C-C-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2056(name, align); +seqs.push_back(newSeq2056); +name = "GQY1XT001A2D3Z"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G---G--G---T----AA-G-----G-C-C---C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2057(name, align); +seqs.push_back(newSeq2057); +name = "GQY1XT001A21FJ"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2058(name, align); +seqs.push_back(newSeq2058); +name = "GQY1XT001A21BT"; +align = "T-C--T-T--GG-A-A-C-T-GCA--TG-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2059(name, align); +seqs.push_back(newSeq2059); +name = "GQY1XT001A1Q4W"; +align = "A-A--C-T--AA-A-A-C-T-A-T--TT-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-A--T-------ATT-A-----A-G-T-C-T-T-C-T-G-T-G-C-C--G---TCG-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2060(name, align); +seqs.push_back(newSeq2060); +name = "GQY1XT001A1OWI"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2061(name, align); +seqs.push_back(newSeq2061); +name = "GQY1XT001A0U24"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2062(name, align); +seqs.push_back(newSeq2062); +name = "GQY1XT001A0CJ8"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT---C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2063(name, align); +seqs.push_back(newSeq2063); +name = "GQY1XT001A09FJ"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-C--A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2064(name, align); +seqs.push_back(newSeq2064); +name = "GQY1XT001A04J0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATC-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2065(name, align); +seqs.push_back(newSeq2065); +name = "GQY1XT001ASJ0W"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T-C----G-G---------------GC-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2066(name, align); +seqs.push_back(newSeq2066); +name = "GQY1XT001EZGV8"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2067(name, align); +seqs.push_back(newSeq2067); +name = "GQY1XT001D11RT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2068(name, align); +seqs.push_back(newSeq2068); +name = "GQY1XT001CABID"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-C-C-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2069(name, align); +seqs.push_back(newSeq2069); +name = "GQY1XT001AR262"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2070(name, align); +seqs.push_back(newSeq2070); +name = "GQY1XT001CEZTO"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2071(name, align); +seqs.push_back(newSeq2071); +name = "GQY1XT001ET5U1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2072(name, align); +seqs.push_back(newSeq2072); +name = "GQY1XT001DPTUR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2073(name, align); +seqs.push_back(newSeq2073); +name = "GQY1XT001D98L5"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2074(name, align); +seqs.push_back(newSeq2074); +name = "GQY1XT001D2WCH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2075(name, align); +seqs.push_back(newSeq2075); +name = "GQY1XT001BCEJ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2076(name, align); +seqs.push_back(newSeq2076); +name = "GQY1XT001AIM3N"; +align = "C-G--T-G--GA-A-A-C-C-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-A-T--CG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-GA-T--CTGG-GC-TG-C-A-ACT--GACG-CTC-A-GT--C-C-CG-AAA--GC-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-AA--------A-C-C-T-C-A-G-T-G-C-T--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2077(name, align); +seqs.push_back(newSeq2077); +name = "GQY1XT001EMIR6"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---T----AA-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GT--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2078(name, align); +seqs.push_back(newSeq2078); +name = "GQY1XT001DD3UK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2079(name, align); +seqs.push_back(newSeq2079); +name = "GQY1XT001C1UQN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2080(name, align); +seqs.push_back(newSeq2080); +name = "GQY1XT001BV6MJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2081(name, align); +seqs.push_back(newSeq2081); +name = "GQY1XT001BQTT3"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-C--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-CC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--AA-C-T-A-A-GT-G-T-T--G-G-A---------------GA-GA------------T-T-C-A-G-T-G-C-T--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TTC-TCC-GCC-T-G-GGG-AG-TA--TG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq2082(name, align); +seqs.push_back(newSeq2082); +name = "GQY1XT001B788F"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2083(name, align); +seqs.push_back(newSeq2083); +name = "GQY1XT001AXNP6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2084(name, align); +seqs.push_back(newSeq2084); +name = "GQY1XT001EVVIE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2085(name, align); +seqs.push_back(newSeq2085); +name = "GQY1XT001EN9CW"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2086(name, align); +seqs.push_back(newSeq2086); +name = "GQY1XT001EGDVE"; +align = "C-G----T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2087(name, align); +seqs.push_back(newSeq2087); +name = "GQY1XT001ECS7B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2088(name, align); +seqs.push_back(newSeq2088); +name = "GQY1XT001DZZW5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAA-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2089(name, align); +seqs.push_back(newSeq2089); +name = "GQY1XT001DXJXL"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2090(name, align); +seqs.push_back(newSeq2090); +name = "GQY1XT001DTTTZ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2091(name, align); +seqs.push_back(newSeq2091); +name = "GQY1XT001DN3FQ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AGA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2092(name, align); +seqs.push_back(newSeq2092); +name = "GQY1XT001DCSDO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2093(name, align); +seqs.push_back(newSeq2093); +name = "GQY1XT001D4RB5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-T----C---C----AC-AG----G-A-T-C---C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2094(name, align); +seqs.push_back(newSeq2094); +name = "GQY1XT001CZGJX"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2095(name, align); +seqs.push_back(newSeq2095); +name = "GQY1XT001CX3VR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2096(name, align); +seqs.push_back(newSeq2096); +name = "GQY1XT001COCAA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2097(name, align); +seqs.push_back(newSeq2097); +name = "GQY1XT001CMOGO"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-GTCCGG-T-G-C-G------------AAT-GAG---------C-GCT-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2098(name, align); +seqs.push_back(newSeq2098); +name = "GQY1XT001CM5V7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2099(name, align); +seqs.push_back(newSeq2099); +name = "GQY1XT001CDHSC"; +align = "C-C--C-C--GA-T-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-C-T-GG-TA-G-G-G-G-A-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-T--CTGG-GC-CA-C-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-T-G--G-G-G-G-G--A--------CC-T-------G-C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq2100(name, align); +seqs.push_back(newSeq2100); +name = "GQY1XT001CBZ32"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-A-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2101(name, align); +seqs.push_back(newSeq2101); +name = "GQY1XT001CAJ93"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2102(name, align); +seqs.push_back(newSeq2102); +name = "GQY1XT001C9TUG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2103(name, align); +seqs.push_back(newSeq2103); +name = "GQY1XT001C9B6T"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2104(name, align); +seqs.push_back(newSeq2104); +name = "GQY1XT001C8S1G"; +align = "C-T--T-G--CG-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GA-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq2105(name, align); +seqs.push_back(newSeq2105); +name = "GQY1XT001C6NLZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2106(name, align); +seqs.push_back(newSeq2106); +name = "GQY1XT001BYYDK"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A------C----AA-A-----G-T-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2107(name, align); +seqs.push_back(newSeq2107); +name = "GQY1XT001BY3AD"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2108(name, align); +seqs.push_back(newSeq2108); +name = "GQY1XT001BRBLS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2109(name, align); +seqs.push_back(newSeq2109); +name = "GQY1XT001BGUGL"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2110(name, align); +seqs.push_back(newSeq2110); +name = "GQY1XT001BBFUD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2111(name, align); +seqs.push_back(newSeq2111); +name = "GQY1XT001B956I"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G----------GCA-AA-GC-----C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2112(name, align); +seqs.push_back(newSeq2112); +name = "GQY1XT001B6JAI"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2113(name, align); +seqs.push_back(newSeq2113); +name = "GQY1XT001B3ZEU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-TGT-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2114(name, align); +seqs.push_back(newSeq2114); +name = "GQY1XT001AXPEJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2115(name, align); +seqs.push_back(newSeq2115); +name = "GQY1XT001ALKX4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2116(name, align); +seqs.push_back(newSeq2116); +name = "GQY1XT001AGK3C"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2117(name, align); +seqs.push_back(newSeq2117); +name = "GQY1XT001AG9FR"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-TCC--G-G-T-T------------CTACGGG---------A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2118(name, align); +seqs.push_back(newSeq2118); +name = "GQY1XT001EZ1BL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2119(name, align); +seqs.push_back(newSeq2119); +name = "GQY1XT001EYWBT"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2120(name, align); +seqs.push_back(newSeq2120); +name = "GQY1XT001EYO8K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2121(name, align); +seqs.push_back(newSeq2121); +name = "GQY1XT001EYKIH"; +align = "C-T--C-T--GA-T-A-C-T-G----TC-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2122(name, align); +seqs.push_back(newSeq2122); +name = "GQY1XT001EYG3J"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2123(name, align); +seqs.push_back(newSeq2123); +name = "GQY1XT001EY82N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2124(name, align); +seqs.push_back(newSeq2124); +name = "GQY1XT001EY1VL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2125(name, align); +seqs.push_back(newSeq2125); +name = "GQY1XT001EXXWG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2126(name, align); +seqs.push_back(newSeq2126); +name = "GQY1XT001EXE4L"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2127(name, align); +seqs.push_back(newSeq2127); +name = "GQY1XT001EW1VI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2128(name, align); +seqs.push_back(newSeq2128); +name = "GQY1XT001EUARD"; +align = "C-G--T-T--G--A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-GCG-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TCA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2129(name, align); +seqs.push_back(newSeq2129); +name = "GQY1XT001ETWVR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2130(name, align); +seqs.push_back(newSeq2130); +name = "GQY1XT001ETW81"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-TCCGGGGG-G-G------------ATT-GACC--------C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2131(name, align); +seqs.push_back(newSeq2131); +name = "GQY1XT001ETQPK"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2132(name, align); +seqs.push_back(newSeq2132); +name = "GQY1XT001EQDIW"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2133(name, align); +seqs.push_back(newSeq2133); +name = "GQY1XT001EQBK2"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-G-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2134(name, align); +seqs.push_back(newSeq2134); +name = "GQY1XT001EPJJ2"; +align = "..T--T-G--GA-A-A-C-T-G-C--CT-G-GAC--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-ACCC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2135(name, align); +seqs.push_back(newSeq2135); +name = "GQY1XT001EOQBJ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2136(name, align); +seqs.push_back(newSeq2136); +name = "GQY1XT001EOLRV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2137(name, align); +seqs.push_back(newSeq2137); +name = "GQY1XT001EO54E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2138(name, align); +seqs.push_back(newSeq2138); +name = "GQY1XT001ENXKK"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-TCG--G-G-G-G-G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2139(name, align); +seqs.push_back(newSeq2139); +name = "GQY1XT001ENSFC"; +align = "C-G--T-T--GA-A-A-CTT-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-AG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2140(name, align); +seqs.push_back(newSeq2140); +name = "GQY1XT001ENMRU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2141(name, align); +seqs.push_back(newSeq2141); +name = "GQY1XT001ENMPD"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G--G-------GAT-TGA-----C-C-C-C-C-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2142(name, align); +seqs.push_back(newSeq2142); +name = "GQY1XT001EN34T"; +align = "T-T--T-G-GAA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2143(name, align); +seqs.push_back(newSeq2143); +name = "GQY1XT001EN0BU"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2144(name, align); +seqs.push_back(newSeq2144); +name = "GQY1XT001EMN18"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--CAA-CG-AAA-GCG-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-ACTG-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2145(name, align); +seqs.push_back(newSeq2145); +name = "GQY1XT001EML96"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2146(name, align); +seqs.push_back(newSeq2146); +name = "GQY1XT001EM3U5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2147(name, align); +seqs.push_back(newSeq2147); +name = "GQY1XT001EM1H3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2148(name, align); +seqs.push_back(newSeq2148); +name = "GQY1XT001EM0QH"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2149(name, align); +seqs.push_back(newSeq2149); +name = "GQY1XT001EM0O7"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GG-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2150(name, align); +seqs.push_back(newSeq2150); +name = "GQY1XT001ELWEQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T-------TCA-AGA-----A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2151(name, align); +seqs.push_back(newSeq2151); +name = "GQY1XT001ELQCK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2152(name, align); +seqs.push_back(newSeq2152); +name = "GQY1XT001ELHWX"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2153(name, align); +seqs.push_back(newSeq2153); +name = "GQY1XT001ELEZO"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2154(name, align); +seqs.push_back(newSeq2154); +name = "GQY1XT001EKI6F"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-CCGGGG-G-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2155(name, align); +seqs.push_back(newSeq2155); +name = "GQY1XT001EK9KU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2156(name, align); +seqs.push_back(newSeq2156); +name = "GQY1XT001EK37G"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2157(name, align); +seqs.push_back(newSeq2157); +name = "GQY1XT001EK258"; +align = "A-GT-T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-CTTT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-A-A-TG-AA--TA-C-T-C-G-CTGG-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2158(name, align); +seqs.push_back(newSeq2158); +name = "GQY1XT001EJTED"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGG-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2159(name, align); +seqs.push_back(newSeq2159); +name = "GQY1XT001EJRAK"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2160(name, align); +seqs.push_back(newSeq2160); +name = "GQY1XT001EJMF9"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-T-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2161(name, align); +seqs.push_back(newSeq2161); +name = "GQY1XT001EHXXG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2162(name, align); +seqs.push_back(newSeq2162); +name = "GQY1XT001EHWUE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2163(name, align); +seqs.push_back(newSeq2163); +name = "GQY1XT001EHOA2"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-G-TCC--T-C-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA--G-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2164(name, align); +seqs.push_back(newSeq2164); +name = "GQY1XT001EH6SV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2165(name, align); +seqs.push_back(newSeq2165); +name = "GQY1XT001EH38T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2166(name, align); +seqs.push_back(newSeq2166); +name = "GQY1XT001EH12M"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2167(name, align); +seqs.push_back(newSeq2167); +name = "GQY1XT001EGV0R"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T---C----TA-C-----G-G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq2168(name, align); +seqs.push_back(newSeq2168); +name = "GQY1XT001EGIMR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-GAG-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2169(name, align); +seqs.push_back(newSeq2169); +name = "GQY1XT001EFKVR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2170(name, align); +seqs.push_back(newSeq2170); +name = "GQY1XT001EFCVQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2171(name, align); +seqs.push_back(newSeq2171); +name = "GQY1XT001EFBM5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G---G--G-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2172(name, align); +seqs.push_back(newSeq2172); +name = "GQY1XT001EF1BF"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G--T---C----GA-A-------C-C-----T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2173(name, align); +seqs.push_back(newSeq2173); +name = "GQY1XT001EEW2G"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2174(name, align); +seqs.push_back(newSeq2174); +name = "GQY1XT001EESPD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2175(name, align); +seqs.push_back(newSeq2175); +name = "GQY1XT001EEA4E"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2176(name, align); +seqs.push_back(newSeq2176); +name = "GQY1XT001EE9GI"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2177(name, align); +seqs.push_back(newSeq2177); +name = "GQY1XT001EDTJ0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2178(name, align); +seqs.push_back(newSeq2178); +name = "GQY1XT001EDI9C"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-TC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2179(name, align); +seqs.push_back(newSeq2179); +name = "GQY1XT001EBK3E"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2180(name, align); +seqs.push_back(newSeq2180); +name = "GQY1XT001EB03N"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2181(name, align); +seqs.push_back(newSeq2181); +name = "GQY1XT001EB01F"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2182(name, align); +seqs.push_back(newSeq2182); +name = "GQY1XT001EAOYD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2183(name, align); +seqs.push_back(newSeq2183); +name = "GQY1XT001E5FM5"; +align = "C-G--T-T--GA-A-A-C-T-G-GT-TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2184(name, align); +seqs.push_back(newSeq2184); +name = "GQY1XT001E5CON"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-ACGG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2185(name, align); +seqs.push_back(newSeq2185); +name = "GQY1XT001E2TM6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2186(name, align); +seqs.push_back(newSeq2186); +name = "GQY1XT001E2H4O"; +align = "C-G--T-T--GA-A-A-C-T-T-G--GT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-GCGGTGAA"; +Sequence newSeq2187(name, align); +seqs.push_back(newSeq2187); +name = "GQY1XT001E2D7X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-TA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2188(name, align); +seqs.push_back(newSeq2188); +name = "GQY1XT001E1PLX"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2189(name, align); +seqs.push_back(newSeq2189); +name = "GQY1XT001E15V8"; +align = "C-G--G-T--TG-A-A-A-C-G-G-----T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-GTGGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2190(name, align); +seqs.push_back(newSeq2190); +name = "GQY1XT001E10TY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2191(name, align); +seqs.push_back(newSeq2191); +name = "GQY1XT001E0DEM"; +align = "C-G--T-T-GAA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2192(name, align); +seqs.push_back(newSeq2192); +name = "GQY1XT001DZV9Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2193(name, align); +seqs.push_back(newSeq2193); +name = "GQY1XT001DYW57"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2194(name, align); +seqs.push_back(newSeq2194); +name = "GQY1XT001DYM6V"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2195(name, align); +seqs.push_back(newSeq2195); +name = "GQY1XT001DY2KC"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2196(name, align); +seqs.push_back(newSeq2196); +name = "GQY1XT001DXL8F"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2197(name, align); +seqs.push_back(newSeq2197); +name = "GQY1XT001DX4S1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2198(name, align); +seqs.push_back(newSeq2198); +name = "GQY1XT001DWVAQ"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2199(name, align); +seqs.push_back(newSeq2199); +name = "GQY1XT001DWTVA"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-GTT-G--G-A-G-G-G----------TTT-CC-GC-----C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2200(name, align); +seqs.push_back(newSeq2200); +name = "GQY1XT001DWF5R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2201(name, align); +seqs.push_back(newSeq2201); +name = "GQY1XT001DW8RG"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2202(name, align); +seqs.push_back(newSeq2202); +name = "GQY1XT001DW1GN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2203(name, align); +seqs.push_back(newSeq2203); +name = "GQY1XT001DVW4B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2204(name, align); +seqs.push_back(newSeq2204); +name = "GQY1XT001DVNJ0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G---C--T-C-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2205(name, align); +seqs.push_back(newSeq2205); +name = "GQY1XT001DVED9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2206(name, align); +seqs.push_back(newSeq2206); +name = "GQY1XT001DUQH1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-AT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2207(name, align); +seqs.push_back(newSeq2207); +name = "GQY1XT001DUOF1"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GCGGA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-GA-ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TGAAA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2208(name, align); +seqs.push_back(newSeq2208); +name = "GQY1XT001DUNV0"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2209(name, align); +seqs.push_back(newSeq2209); +name = "GQY1XT001DUFHE"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2210(name, align); +seqs.push_back(newSeq2210); +name = "GQY1XT001DUA2T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2211(name, align); +seqs.push_back(newSeq2211); +name = "GQY1XT001DTC7H"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2212(name, align); +seqs.push_back(newSeq2212); +name = "GQY1XT001DT9LA"; +align = "C-G----T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2213(name, align); +seqs.push_back(newSeq2213); +name = "GQY1XT001DSUJF"; +align = "A-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-TCC--G-G-T-T------------CTACGGG---------A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2214(name, align); +seqs.push_back(newSeq2214); +name = "GQY1XT001DSSPW"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AA-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2215(name, align); +seqs.push_back(newSeq2215); +name = "GQY1XT001DS9WE"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2216(name, align); +seqs.push_back(newSeq2216); +name = "GQY1XT001DR9VE"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2217(name, align); +seqs.push_back(newSeq2217); +name = "GQY1XT001DR038"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2218(name, align); +seqs.push_back(newSeq2218); +name = "GQY1XT001DQZK0"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-GTCCGG-T-G-C-G------------AAT-GAG---------C-GCT-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2219(name, align); +seqs.push_back(newSeq2219); +name = "GQY1XT001DQUFK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2220(name, align); +seqs.push_back(newSeq2220); +name = "GQY1XT001DQNEZ"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2221(name, align); +seqs.push_back(newSeq2221); +name = "GQY1XT001DQ915"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2222(name, align); +seqs.push_back(newSeq2222); +name = "GQY1XT001DQ8IM"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-TGG-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-GCG-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2223(name, align); +seqs.push_back(newSeq2223); +name = "GQY1XT001DPV47"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2224(name, align); +seqs.push_back(newSeq2224); +name = "GQY1XT001DPTZA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGA-GG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2225(name, align); +seqs.push_back(newSeq2225); +name = "GQY1XT001DPHDL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGAG----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2226(name, align); +seqs.push_back(newSeq2226); +name = "GQY1XT001DONB7"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AC-A-G-C--T-T-G-A-T-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2227(name, align); +seqs.push_back(newSeq2227); +name = "GQY1XT001DN4K7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2228(name, align); +seqs.push_back(newSeq2228); +name = "GQY1XT001DMBHH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-ACGG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2229(name, align); +seqs.push_back(newSeq2229); +name = "GQY1XT001DM4OG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2230(name, align); +seqs.push_back(newSeq2230); +name = "GQY1XT001DLHTI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2231(name, align); +seqs.push_back(newSeq2231); +name = "GQY1XT001DK3EL"; +align = "T-T--T-A--GA-A-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G---T------C-G-G--G---T----TA-CC----G---------------G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2232(name, align); +seqs.push_back(newSeq2232); +name = "GQY1XT001DJS6C"; +align = "G-T--T-T--GA-A-A-C-T-G-T--CG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GACC------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2233(name, align); +seqs.push_back(newSeq2233); +name = "GQY1XT001DJ51Z"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2234(name, align); +seqs.push_back(newSeq2234); +name = "GQY1XT001DHGCR"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GG-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2235(name, align); +seqs.push_back(newSeq2235); +name = "GQY1XT001DGXZT"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2236(name, align); +seqs.push_back(newSeq2236); +name = "GQY1XT001DGTVC"; +align = "A-A--C-C--AA-A-A-C-T-A-T--CT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-A--T-------GAA-TA------A-T-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2237(name, align); +seqs.push_back(newSeq2237); +name = "GQY1XT001DGJN3"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2238(name, align); +seqs.push_back(newSeq2238); +name = "GQY1XT001DGBZ3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2239(name, align); +seqs.push_back(newSeq2239); +name = "GQY1XT001DFZCJ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GA--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-A-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2240(name, align); +seqs.push_back(newSeq2240); +name = "GQY1XT001DFJPE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T---GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2241(name, align); +seqs.push_back(newSeq2241); +name = "GQY1XT001DFE4U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2242(name, align); +seqs.push_back(newSeq2242); +name = "GQY1XT001DF8IK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2243(name, align); +seqs.push_back(newSeq2243); +name = "GQY1XT001DEXPM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2244(name, align); +seqs.push_back(newSeq2244); +name = "GQY1XT001DERAL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2245(name, align); +seqs.push_back(newSeq2245); +name = "GQY1XT001DEDV1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2246(name, align); +seqs.push_back(newSeq2246); +name = "GQY1XT001DE4MT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2247(name, align); +seqs.push_back(newSeq2247); +name = "GQY1XT001DBSD9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-ACTG-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2248(name, align); +seqs.push_back(newSeq2248); +name = "GQY1XT001DBPAC"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-T-G-A--G--------CA-AA----G-C-T-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2249(name, align); +seqs.push_back(newSeq2249); +name = "GQY1XT001DBOLU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2250(name, align); +seqs.push_back(newSeq2250); +name = "GQY1XT001DB8F3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2251(name, align); +seqs.push_back(newSeq2251); +name = "GQY1XT001DARFS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2252(name, align); +seqs.push_back(newSeq2252); +name = "GQY1XT001DAPRN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-GTT-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG--AA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2253(name, align); +seqs.push_back(newSeq2253); +name = "GQY1XT001DA93A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2254(name, align); +seqs.push_back(newSeq2254); +name = "GQY1XT001D9MTI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2255(name, align); +seqs.push_back(newSeq2255); +name = "GQY1XT001D8D72"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2256(name, align); +seqs.push_back(newSeq2256); +name = "GQY1XT001D7K8Y"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------TCT-GA--C-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T---GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq2257(name, align); +seqs.push_back(newSeq2257); +name = "GQY1XT001D7G24"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2258(name, align); +seqs.push_back(newSeq2258); +name = "GQY1XT001D75WE"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2259(name, align); +seqs.push_back(newSeq2259); +name = "GQY1XT001D6QT9"; +align = "A-T--T-G--GA-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2260(name, align); +seqs.push_back(newSeq2260); +name = "GQY1XT001D6NM5"; +align = "C-A--T-T-GAA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-A-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2261(name, align); +seqs.push_back(newSeq2261); +name = "GQY1XT001D6JYV"; +align = "G-T--C-C--CG-A-A-C-T-G-GC-GT-G-T-C--T-C-G-A-G-T-T-C-GG-TA-G-G-G-G-A-G--AT-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-A-TC-T--CTGG-GC-CG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-TGG--G-GAG-------------GATA-GC-CT---------C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq2262(name, align); +seqs.push_back(newSeq2262); +name = "GQY1XT001D668E"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2263(name, align); +seqs.push_back(newSeq2263); +name = "GQY1XT001D5MFV"; +align = "A-A--C-T--AA-A-A-C-T-A-T--CT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCC--G-G-G-C-C--G-------AAT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2264(name, align); +seqs.push_back(newSeq2264); +name = "GQY1XT001D4N08"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G---G------------TTC-TAC---------G-G-G-ACT-G-G-GTG-G--CAC-A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2265(name, align); +seqs.push_back(newSeq2265); +name = "GQY1XT001D4I9I"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G---T--C---C-G-G--T-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2266(name, align); +seqs.push_back(newSeq2266); +name = "GQY1XT001D4CDR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2267(name, align); +seqs.push_back(newSeq2267); +name = "GQY1XT001D41JD"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G---G-G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2268(name, align); +seqs.push_back(newSeq2268); +name = "GQY1XT001D3UVI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2269(name, align); +seqs.push_back(newSeq2269); +name = "GQY1XT001D3TGT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2270(name, align); +seqs.push_back(newSeq2270); +name = "GQY1XT001D2V7O"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2271(name, align); +seqs.push_back(newSeq2271); +name = "GQY1XT001D2O2I"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2272(name, align); +seqs.push_back(newSeq2272); +name = "GQY1XT001D1TIS"; +align = "C-T--T-A--GA-A-A-C-T-G-G--TA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G---T--C-----G-G----------G---T-------T-A-C-C---G---G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2273(name, align); +seqs.push_back(newSeq2273); +name = "GQY1XT001D1KCQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-G-T--C-C-G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2274(name, align); +seqs.push_back(newSeq2274); +name = "GQY1XT001D1H65"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2275(name, align); +seqs.push_back(newSeq2275); +name = "GQY1XT001D15SY"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G----C---C----GC-A-----A-G-G-C-T-T-C-G-G-T-G-C-C--GG--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq2276(name, align); +seqs.push_back(newSeq2276); +name = "GQY1XT001D12JD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2277(name, align); +seqs.push_back(newSeq2277); +name = "GQY1XT001D0UXA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2278(name, align); +seqs.push_back(newSeq2278); +name = "GQY1XT001D0LWE"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2279(name, align); +seqs.push_back(newSeq2279); +name = "GQY1XT001D03JZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2280(name, align); +seqs.push_back(newSeq2280); +name = "GQY1XT001CZRIA"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-G-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GATA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T----G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2281(name, align); +seqs.push_back(newSeq2281); +name = "GQY1XT001CZ88P"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CTGG-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2282(name, align); +seqs.push_back(newSeq2282); +name = "GQY1XT001CZ2XN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2283(name, align); +seqs.push_back(newSeq2283); +name = "GQY1XT001CYFLO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2284(name, align); +seqs.push_back(newSeq2284); +name = "GQY1XT001CXZ3R"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G---------GTAT-GG-AC-----C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2285(name, align); +seqs.push_back(newSeq2285); +name = "GQY1XT001CXQN8"; +align = "TCT--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-C-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2286(name, align); +seqs.push_back(newSeq2286); +name = "GQY1XT001CX4XX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2287(name, align); +seqs.push_back(newSeq2287); +name = "GQY1XT001CX3XD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2288(name, align); +seqs.push_back(newSeq2288); +name = "GQY1XT001CX0JZ"; +align = "C-G----T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G---A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-ACTG-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2289(name, align); +seqs.push_back(newSeq2289); +name = "GQY1XT001CWGHE"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2290(name, align); +seqs.push_back(newSeq2290); +name = "GQY1XT001CWBXI"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T----G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2291(name, align); +seqs.push_back(newSeq2291); +name = "GQY1XT001CWANE"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-A-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2292(name, align); +seqs.push_back(newSeq2292); +name = "GQY1XT001CVCCU"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2293(name, align); +seqs.push_back(newSeq2293); +name = "GQY1XT001CSSBN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2294(name, align); +seqs.push_back(newSeq2294); +name = "GQY1XT001CSN03"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2295(name, align); +seqs.push_back(newSeq2295); +name = "GQY1XT001CSGXE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2296(name, align); +seqs.push_back(newSeq2296); +name = "GQY1XT001CP95M"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2297(name, align); +seqs.push_back(newSeq2297); +name = "GQY1XT001CP169"; +align = "C-G--T-T--GA-A-A-C-T-G----GT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2298(name, align); +seqs.push_back(newSeq2298); +name = "GQY1XT001COGSY"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----C---T----CA-CG----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2299(name, align); +seqs.push_back(newSeq2299); +name = "GQY1XT001CO68U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-CT-T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2300(name, align); +seqs.push_back(newSeq2300); +name = "GQY1XT001CNKEX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAA-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2301(name, align); +seqs.push_back(newSeq2301); +name = "GQY1XT001CM5YX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-CGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2302(name, align); +seqs.push_back(newSeq2302); +name = "GQY1XT001CK485"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CGG-----G-A-C-T-G-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2303(name, align); +seqs.push_back(newSeq2303); +name = "GQY1XT001CJQYC"; +align = "C-G--T-T-GAA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2304(name, align); +seqs.push_back(newSeq2304); +name = "GQY1XT001CJ6I6"; +align = "C-G--T-T--GA-A-A-C-TGG-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2305(name, align); +seqs.push_back(newSeq2305); +name = "GQY1XT001CIDBM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAAGG-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2306(name, align); +seqs.push_back(newSeq2306); +name = "GQY1XT001CHSVD"; +align = "C-G----T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2307(name, align); +seqs.push_back(newSeq2307); +name = "GQY1XT001CH9SM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G---A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2308(name, align); +seqs.push_back(newSeq2308); +name = "GQY1XT001CH86G"; +align = "A----T-T--GA-A-A-C-T-G-T---G-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2309(name, align); +seqs.push_back(newSeq2309); +name = "GQY1XT001CH2DV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2310(name, align); +seqs.push_back(newSeq2310); +name = "GQY1XT001CGHIY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2311(name, align); +seqs.push_back(newSeq2311); +name = "GQY1XT001CG8RD"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C-----A-GG----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2312(name, align); +seqs.push_back(newSeq2312); +name = "GQY1XT001CG85R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2313(name, align); +seqs.push_back(newSeq2313); +name = "GQY1XT001CFXQH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2314(name, align); +seqs.push_back(newSeq2314); +name = "GQY1XT001CFGXK"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2315(name, align); +seqs.push_back(newSeq2315); +name = "GQY1XT001CFGWX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2316(name, align); +seqs.push_back(newSeq2316); +name = "GQY1XT001CEY38"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2317(name, align); +seqs.push_back(newSeq2317); +name = "GQY1XT001CEXOW"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2318(name, align); +seqs.push_back(newSeq2318); +name = "GQY1XT001CE3M2"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-AAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2319(name, align); +seqs.push_back(newSeq2319); +name = "GQY1XT001CE01N"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2320(name, align); +seqs.push_back(newSeq2320); +name = "GQY1XT001CDIOE"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2321(name, align); +seqs.push_back(newSeq2321); +name = "GQY1XT001CDDN6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2322(name, align); +seqs.push_back(newSeq2322); +name = "GQY1XT001CD3K3"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C----T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--GC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2323(name, align); +seqs.push_back(newSeq2323); +name = "GQY1XT001CCS4A"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2324(name, align); +seqs.push_back(newSeq2324); +name = "GQY1XT001CABV8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2325(name, align); +seqs.push_back(newSeq2325); +name = "GQY1XT001C9YVV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2326(name, align); +seqs.push_back(newSeq2326); +name = "GQY1XT001C9E53"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-A-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGA-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2327(name, align); +seqs.push_back(newSeq2327); +name = "GQY1XT001C7RLB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2328(name, align); +seqs.push_back(newSeq2328); +name = "GQY1XT001C7AIP"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2329(name, align); +seqs.push_back(newSeq2329); +name = "GQY1XT001C75MF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2330(name, align); +seqs.push_back(newSeq2330); +name = "GQY1XT001C6K9P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CT-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2331(name, align); +seqs.push_back(newSeq2331); +name = "GQY1XT001C5MGN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2332(name, align); +seqs.push_back(newSeq2332); +name = "GQY1XT001C58KW"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2333(name, align); +seqs.push_back(newSeq2333); +name = "GQY1XT001C523Y"; +align = "A-T--C-A--G--A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2334(name, align); +seqs.push_back(newSeq2334); +name = "GQY1XT001C4NZY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2335(name, align); +seqs.push_back(newSeq2335); +name = "GQY1XT001C4LW9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2336(name, align); +seqs.push_back(newSeq2336); +name = "GQY1XT001C4865"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2337(name, align); +seqs.push_back(newSeq2337); +name = "GQY1XT001C40WB"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2338(name, align); +seqs.push_back(newSeq2338); +name = "GQY1XT001C397Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2339(name, align); +seqs.push_back(newSeq2339); +name = "GQY1XT001C3304"; +align = "T-T--T-G-GAA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2340(name, align); +seqs.push_back(newSeq2340); +name = "GQY1XT001C2T69"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2341(name, align); +seqs.push_back(newSeq2341); +name = "GQY1XT001C2IXZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2342(name, align); +seqs.push_back(newSeq2342); +name = "GQY1XT001C26LW"; +align = "A-T--T-C--AA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G----------ACGACA-GT-----G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2343(name, align); +seqs.push_back(newSeq2343); +name = "GQY1XT001C25U9"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2344(name, align); +seqs.push_back(newSeq2344); +name = "GQY1XT001C1I37"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-GTACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2345(name, align); +seqs.push_back(newSeq2345); +name = "GQY1XT001C1CCS"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2346(name, align); +seqs.push_back(newSeq2346); +name = "GQY1XT001C0IH9"; +align = "C-G--T-G--GA-A-A-C-C-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-A-T--CG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2347(name, align); +seqs.push_back(newSeq2347); +name = "GQY1XT001C09HT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2348(name, align); +seqs.push_back(newSeq2348); +name = "GQY1XT001BZSFO"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2349(name, align); +seqs.push_back(newSeq2349); +name = "GQY1XT001BZP8J"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-GTCCGG-T-G-C-G------------AAT-GAG---------C-GCT-G-G-G-C-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2350(name, align); +seqs.push_back(newSeq2350); +name = "GQY1XT001BZJJ2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2351(name, align); +seqs.push_back(newSeq2351); +name = "GQY1XT001BZIJ4"; +align = "A-T--T-G--GA-A-A-C-T-G-T--AT-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGA-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2352(name, align); +seqs.push_back(newSeq2352); +name = "GQY1XT001BYS0K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAAGG-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2353(name, align); +seqs.push_back(newSeq2353); +name = "GQY1XT001BYOEW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2354(name, align); +seqs.push_back(newSeq2354); +name = "GQY1XT001BYB50"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2355(name, align); +seqs.push_back(newSeq2355); +name = "GQY1XT001BVOX9"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C----T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCCGT-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTAGA"; +Sequence newSeq2356(name, align); +seqs.push_back(newSeq2356); +name = "GQY1XT001BVI50"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2357(name, align); +seqs.push_back(newSeq2357); +name = "GQY1XT001BVE7A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C-------TTC-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2358(name, align); +seqs.push_back(newSeq2358); +name = "GQY1XT001BV1YB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2359(name, align); +seqs.push_back(newSeq2359); +name = "GQY1XT001BSJJO"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2360(name, align); +seqs.push_back(newSeq2360); +name = "GQY1XT001BSAZ7"; +align = "C-T--C-T--GA-T-G-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2361(name, align); +seqs.push_back(newSeq2361); +name = "GQY1XT001BS4PJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2362(name, align); +seqs.push_back(newSeq2362); +name = "GQY1XT001BQNRJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2363(name, align); +seqs.push_back(newSeq2363); +name = "GQY1XT001BQI6Q"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-A-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2364(name, align); +seqs.push_back(newSeq2364); +name = "GQY1XT001BP6T4"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TAC-CGG-----G-A-C-T-G-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2365(name, align); +seqs.push_back(newSeq2365); +name = "GQY1XT001BO1B9"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAGTTGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2366(name, align); +seqs.push_back(newSeq2366); +name = "GQY1XT001BNHFP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2367(name, align); +seqs.push_back(newSeq2367); +name = "GQY1XT001BM3N7"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2368(name, align); +seqs.push_back(newSeq2368); +name = "GQY1XT001BLX3A"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2369(name, align); +seqs.push_back(newSeq2369); +name = "GQY1XT001BL4UA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2370(name, align); +seqs.push_back(newSeq2370); +name = "GQY1XT001BKWUQ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2371(name, align); +seqs.push_back(newSeq2371); +name = "GQY1XT001BJ7J6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGCGAA"; +Sequence newSeq2372(name, align); +seqs.push_back(newSeq2372); +name = "GQY1XT001BIB5H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2373(name, align); +seqs.push_back(newSeq2373); +name = "GQY1XT001BIAMP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-GAT--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2374(name, align); +seqs.push_back(newSeq2374); +name = "GQY1XT001BHZMM"; +align = "C-G--T-T--GA-A-A-C-T-G-G---C-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-G--C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2375(name, align); +seqs.push_back(newSeq2375); +name = "GQY1XT001BHZH4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2376(name, align); +seqs.push_back(newSeq2376); +name = "GQY1XT001BGP18"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2377(name, align); +seqs.push_back(newSeq2377); +name = "GQY1XT001BGNFF"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T---G-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATTCC-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2378(name, align); +seqs.push_back(newSeq2378); +name = "GQY1XT001BE830"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2379(name, align); +seqs.push_back(newSeq2379); +name = "GQY1XT001BE1VD"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TA-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2380(name, align); +seqs.push_back(newSeq2380); +name = "GQY1XT001BDUN6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2381(name, align); +seqs.push_back(newSeq2381); +name = "GQY1XT001BCPKR"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2382(name, align); +seqs.push_back(newSeq2382); +name = "GQY1XT001BCMUX"; +align = "A-T--C-A--GA-A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2383(name, align); +seqs.push_back(newSeq2383); +name = "GQY1XT001BCHP8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2384(name, align); +seqs.push_back(newSeq2384); +name = "GQY1XT001BBYUK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2385(name, align); +seqs.push_back(newSeq2385); +name = "GQY1XT001BAKTQ"; +align = "A-T--A-T--AA-A-A-C-T-G-T--TT-A-A-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-TG-AGA-G-C-A-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CTG-T-AAAC-G-A-TG-GG--TA-C-T-A-G-GT-G-T-G--G-G-T-T-G--T-------GAA-TA------A-C-A-A-T-T-C-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAC-CCC-GCC-T-G-AGG-AG-TA--CG-AT-C-G-C-A-AGATTAAA"; +Sequence newSeq2386(name, align); +seqs.push_back(newSeq2386); +name = "GQY1XT001BA91D"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-A-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2387(name, align); +seqs.push_back(newSeq2387); +name = "GQY1XT001BA7J8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2388(name, align); +seqs.push_back(newSeq2388); +name = "GQY1XT001BA5GH"; +align = "C-G--T-T--GA-A-A-C-T-G----GT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2389(name, align); +seqs.push_back(newSeq2389); +name = "GQY1XT001B9Q5E"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2390(name, align); +seqs.push_back(newSeq2390); +name = "GQY1XT001B9A2V"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-A-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2391(name, align); +seqs.push_back(newSeq2391); +name = "GQY1XT001B8RLN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2392(name, align); +seqs.push_back(newSeq2392); +name = "GQY1XT001B8MID"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G---A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2393(name, align); +seqs.push_back(newSeq2393); +name = "GQY1XT001B80IP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2394(name, align); +seqs.push_back(newSeq2394); +name = "GQY1XT001B6S1X"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-T-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2395(name, align); +seqs.push_back(newSeq2395); +name = "GQY1XT001B6NYW"; +align = "..T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2396(name, align); +seqs.push_back(newSeq2396); +name = "GQY1XT001B6L4H"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-GC-C-CC-GA-T-T-GCGGAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2397(name, align); +seqs.push_back(newSeq2397); +name = "GQY1XT001B6GNO"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2398(name, align); +seqs.push_back(newSeq2398); +name = "GQY1XT001B66RF"; +align = "A-G----T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TA-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2399(name, align); +seqs.push_back(newSeq2399); +name = "GQY1XT001B61RV"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGC-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2400(name, align); +seqs.push_back(newSeq2400); +name = "GQY1XT001B5CKB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2401(name, align); +seqs.push_back(newSeq2401); +name = "GQY1XT001B51KL"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-C-G--G---C----AA-A-----G-C-C-G-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2402(name, align); +seqs.push_back(newSeq2402); +name = "GQY1XT001B4924"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2403(name, align); +seqs.push_back(newSeq2403); +name = "GQY1XT001B43PG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2404(name, align); +seqs.push_back(newSeq2404); +name = "GQY1XT001B42UM"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2405(name, align); +seqs.push_back(newSeq2405); +name = "GQY1XT001B3AAS"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2406(name, align); +seqs.push_back(newSeq2406); +name = "GQY1XT001B351W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2407(name, align); +seqs.push_back(newSeq2407); +name = "GQY1XT001B2B02"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2408(name, align); +seqs.push_back(newSeq2408); +name = "GQY1XT001B1O66"; +align = "..T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GAG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2409(name, align); +seqs.push_back(newSeq2409); +name = "GQY1XT001B1KJB"; +align = "C-G--T-T--GA-A-ACC-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CA-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CG-------AT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2410(name, align); +seqs.push_back(newSeq2410); +name = "GQY1XT001AZ0YY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2411(name, align); +seqs.push_back(newSeq2411); +name = "GQY1XT001AYWN9"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GTCC-CA-C-G-CAG-T-AAAC-G-A-TGAAA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2412(name, align); +seqs.push_back(newSeq2412); +name = "GQY1XT001AXE4L"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2413(name, align); +seqs.push_back(newSeq2413); +name = "GQY1XT001AWZ90"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--G-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2414(name, align); +seqs.push_back(newSeq2414); +name = "GQY1XT001AWJD3"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2415(name, align); +seqs.push_back(newSeq2415); +name = "GQY1XT001AWJ4F"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2416(name, align); +seqs.push_back(newSeq2416); +name = "GQY1XT001AWGSE"; +align = "T-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2417(name, align); +seqs.push_back(newSeq2417); +name = "GQY1XT001AW0PD"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-GCG-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2418(name, align); +seqs.push_back(newSeq2418); +name = "GQY1XT001AV6XZ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2419(name, align); +seqs.push_back(newSeq2419); +name = "GQY1XT001AV240"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2420(name, align); +seqs.push_back(newSeq2420); +name = "GQY1XT001AUVTV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2421(name, align); +seqs.push_back(newSeq2421); +name = "GQY1XT001AURRM"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-A-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2422(name, align); +seqs.push_back(newSeq2422); +name = "GQY1XT001ATUWN"; +align = "C-G----T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-GCG-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2423(name, align); +seqs.push_back(newSeq2423); +name = "GQY1XT001ATI5U"; +align = "A-T--TGG--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TGAAA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-TGG-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2424(name, align); +seqs.push_back(newSeq2424); +name = "GQY1XT001ATHKA"; +align = "A-G----T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-GTCCGG-G-G-G-G------------ATT-GACC--------C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2425(name, align); +seqs.push_back(newSeq2425); +name = "GQY1XT001AQ17Y"; +align = "C-G--T-C-GTAGA-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2426(name, align); +seqs.push_back(newSeq2426); +name = "GQY1XT001APSXD"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2427(name, align); +seqs.push_back(newSeq2427); +name = "GQY1XT001APKVT"; +align = "C-C--T-T--GG-A-A-C-T-G-C--TT-G-G-C--T-G-G-A-G-T-G---CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2428(name, align); +seqs.push_back(newSeq2428); +name = "GQY1XT001AP9K8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2429(name, align); +seqs.push_back(newSeq2429); +name = "GQY1XT001AP779"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-ACGG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CTGG-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2430(name, align); +seqs.push_back(newSeq2430); +name = "GQY1XT001AP0HA"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G--A---C----TG-A-----C-C-C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2431(name, align); +seqs.push_back(newSeq2431); +name = "GQY1XT001AO016"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2432(name, align); +seqs.push_back(newSeq2432); +name = "GQY1XT001ANRDN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CG------GAG-TGA-----G---G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T---GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2433(name, align); +seqs.push_back(newSeq2433); +name = "GQY1XT001AN2YO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-G-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2434(name, align); +seqs.push_back(newSeq2434); +name = "GQY1XT001AMQH4"; +align = "C-G----T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAGTTGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2435(name, align); +seqs.push_back(newSeq2435); +name = "GQY1XT001AMERS"; +align = "C-G----T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2436(name, align); +seqs.push_back(newSeq2436); +name = "GQY1XT001AM67G"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2437(name, align); +seqs.push_back(newSeq2437); +name = "GQY1XT001ALQ0I"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2438(name, align); +seqs.push_back(newSeq2438); +name = "GQY1XT001ALOK9"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2439(name, align); +seqs.push_back(newSeq2439); +name = "GQY1XT001ALNXT"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2440(name, align); +seqs.push_back(newSeq2440); +name = "GQY1XT001AKOR4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-A-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CG-------AT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2441(name, align); +seqs.push_back(newSeq2441); +name = "GQY1XT001AI1FE"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--A---CG---AC-A-----G-T-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2442(name, align); +seqs.push_back(newSeq2442); +name = "GQY1XT001AHY9K"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TG------G-C-C-CAT-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2443(name, align); +seqs.push_back(newSeq2443); +name = "GQY1XT001AHWOL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2444(name, align); +seqs.push_back(newSeq2444); +name = "GQY1XT001AG8EU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2445(name, align); +seqs.push_back(newSeq2445); +name = "GQY1XT001AG3B8"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2446(name, align); +seqs.push_back(newSeq2446); +name = "GQY1XT001AFRIJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--C-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2447(name, align); +seqs.push_back(newSeq2447); +name = "GQY1XT001AFQZ9"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-GC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-CG-G-G-G-G-G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2448(name, align); +seqs.push_back(newSeq2448); +name = "GQY1XT001AFH4C"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2449(name, align); +seqs.push_back(newSeq2449); +name = "GQY1XT001AEYVK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2450(name, align); +seqs.push_back(newSeq2450); +name = "GQY1XT001AEL2X"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-TCC--G-G-T-G-C--G---A----AT-G-----A-G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2451(name, align); +seqs.push_back(newSeq2451); +name = "GQY1XT001A8DPO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2452(name, align); +seqs.push_back(newSeq2452); +name = "GQY1XT001A7W4P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2453(name, align); +seqs.push_back(newSeq2453); +name = "GQY1XT001A7V7C"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2454(name, align); +seqs.push_back(newSeq2454); +name = "GQY1XT001A774H"; +align = "C-G--T-T--G--A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2455(name, align); +seqs.push_back(newSeq2455); +name = "GQY1XT001A6X4L"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-CCAA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2456(name, align); +seqs.push_back(newSeq2456); +name = "GQY1XT001A64OH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2457(name, align); +seqs.push_back(newSeq2457); +name = "GQY1XT001A60MM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-TA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2458(name, align); +seqs.push_back(newSeq2458); +name = "GQY1XT001A5Q2R"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2459(name, align); +seqs.push_back(newSeq2459); +name = "GQY1XT001A4AB5"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TTGG-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2460(name, align); +seqs.push_back(newSeq2460); +name = "GQY1XT001A1I70"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2461(name, align); +seqs.push_back(newSeq2461); +name = "GQY1XT001A1DE5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2462(name, align); +seqs.push_back(newSeq2462); +name = "GQY1XT001A15A7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2463(name, align); +seqs.push_back(newSeq2463); +name = "GQY1XT001A03YW"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGGTA--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------GT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2464(name, align); +seqs.push_back(newSeq2464); +name = "GQY1XT001A9BAI"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2465(name, align); +seqs.push_back(newSeq2465); +name = "GQY1XT001D9OS4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2466(name, align); +seqs.push_back(newSeq2466); +name = "GQY1XT001CBY45"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2467(name, align); +seqs.push_back(newSeq2467); +name = "GQY1XT001DL7AU"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2468(name, align); +seqs.push_back(newSeq2468); +name = "GQY1XT001CHH60"; +align = "A-A--C-T--AA-A-A-C-T-A-A--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-T-G--T-------GAT-GA------A-C-G-C-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2469(name, align); +seqs.push_back(newSeq2469); +name = "GQY1XT001BPGSI"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2470(name, align); +seqs.push_back(newSeq2470); +name = "GQY1XT001DU562"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-T-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-A-C--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-CC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2471(name, align); +seqs.push_back(newSeq2471); +name = "GQY1XT001CYXHS"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2472(name, align); +seqs.push_back(newSeq2472); +name = "GQY1XT001AIBAJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGAG----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2473(name, align); +seqs.push_back(newSeq2473); +name = "GQY1XT001EFWU4"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C--------AA-AT------G-A-G-A-T-CTGAG-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2474(name, align); +seqs.push_back(newSeq2474); +name = "GQY1XT001EFCWF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2475(name, align); +seqs.push_back(newSeq2475); +name = "GQY1XT001D9HMJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2476(name, align); +seqs.push_back(newSeq2476); +name = "GQY1XT001CY9R7"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2477(name, align); +seqs.push_back(newSeq2477); +name = "GQY1XT001CQRKG"; +align = "A-T--T-C--AA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2478(name, align); +seqs.push_back(newSeq2478); +name = "GQY1XT001CJDEI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2479(name, align); +seqs.push_back(newSeq2479); +name = "GQY1XT001CF1T3"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GTCCACA-C----CG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq2480(name, align); +seqs.push_back(newSeq2480); +name = "GQY1XT001CBCXW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2481(name, align); +seqs.push_back(newSeq2481); +name = "GQY1XT001BE1NB"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2482(name, align); +seqs.push_back(newSeq2482); +name = "GQY1XT001BCA6U"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2483(name, align); +seqs.push_back(newSeq2483); +name = "GQY1XT001B68W9"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2484(name, align); +seqs.push_back(newSeq2484); +name = "GQY1XT001AYQUX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2485(name, align); +seqs.push_back(newSeq2485); +name = "GQY1XT001AX5T9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2486(name, align); +seqs.push_back(newSeq2486); +name = "GQY1XT001ALN4T"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2487(name, align); +seqs.push_back(newSeq2487); +name = "GQY1XT001AJG87"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G---G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2488(name, align); +seqs.push_back(newSeq2488); +name = "GQY1XT001AJ30Z"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2489(name, align); +seqs.push_back(newSeq2489); +name = "GQY1XT001A7WE9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C----T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2490(name, align); +seqs.push_back(newSeq2490); +name = "GQY1XT001A6VBJ"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-GAG-GTT--------TCC-GC--------C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2491(name, align); +seqs.push_back(newSeq2491); +name = "GQY1XT001EZYSM"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CGAAAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-CCGGGG-G-G-A--A--------GT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2492(name, align); +seqs.push_back(newSeq2492); +name = "GQY1XT001EZQ8T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2493(name, align); +seqs.push_back(newSeq2493); +name = "GQY1XT001EXSA0"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-TG-AAA-GCG-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2494(name, align); +seqs.push_back(newSeq2494); +name = "GQY1XT001EVJL8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2495(name, align); +seqs.push_back(newSeq2495); +name = "GQY1XT001ET74J"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGAG----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2496(name, align); +seqs.push_back(newSeq2496); +name = "GQY1XT001ESNSJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2497(name, align); +seqs.push_back(newSeq2497); +name = "GQY1XT001ERL66"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--T-G-G-T-C--C-------GAA-TGA-----A-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2498(name, align); +seqs.push_back(newSeq2498); +name = "GQY1XT001EPVS7"; +align = "A-T--C-A--GA-A-A-C-T-G-T--G--A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2499(name, align); +seqs.push_back(newSeq2499); +name = "GQY1XT001EPP77"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2500(name, align); +seqs.push_back(newSeq2500); +name = "GQY1XT001EPLB3"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-G-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2501(name, align); +seqs.push_back(newSeq2501); +name = "GQY1XT001EPJT4"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2502(name, align); +seqs.push_back(newSeq2502); +name = "GQY1XT001EP2GW"; +align = "C-A--T-T--GA-A-ACC-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-T-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACT-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2503(name, align); +seqs.push_back(newSeq2503); +name = "GQY1XT001ENZ2E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2504(name, align); +seqs.push_back(newSeq2504); +name = "GQY1XT001ENUI2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2505(name, align); +seqs.push_back(newSeq2505); +name = "GQY1XT001ENHB8"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--A---C----TG-A-----C-C-C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TG--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2506(name, align); +seqs.push_back(newSeq2506); +name = "GQY1XT001EMW73"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-G-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2507(name, align); +seqs.push_back(newSeq2507); +name = "GQY1XT001EMEEK"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G---G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2508(name, align); +seqs.push_back(newSeq2508); +name = "GQY1XT001EM78I"; +align = "A-T--T-G--GA-A-A-C-T-A-C--CG-A-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-T-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2509(name, align); +seqs.push_back(newSeq2509); +name = "GQY1XT001ELEJ9"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-T-G---------GACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2510(name, align); +seqs.push_back(newSeq2510); +name = "GQY1XT001EKJWY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-A-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2511(name, align); +seqs.push_back(newSeq2511); +name = "GQY1XT001EGNVG"; +align = "C-G--T-T--GA-A-A-C-T---G--AT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2512(name, align); +seqs.push_back(newSeq2512); +name = "GQY1XT001EG269"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2513(name, align); +seqs.push_back(newSeq2513); +name = "GQY1XT001EEQKJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2514(name, align); +seqs.push_back(newSeq2514); +name = "GQY1XT001EDTK5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2515(name, align); +seqs.push_back(newSeq2515); +name = "GQY1XT001EDMS3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2516(name, align); +seqs.push_back(newSeq2516); +name = "GQY1XT001EDABE"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2517(name, align); +seqs.push_back(newSeq2517); +name = "GQY1XT001ED3D6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2518(name, align); +seqs.push_back(newSeq2518); +name = "GQY1XT001ED0QA"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2519(name, align); +seqs.push_back(newSeq2519); +name = "GQY1XT001ECE4O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2520(name, align); +seqs.push_back(newSeq2520); +name = "GQY1XT001EBDSU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ATGGTGAA"; +Sequence newSeq2521(name, align); +seqs.push_back(newSeq2521); +name = "GQY1XT001EB6IM"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2522(name, align); +seqs.push_back(newSeq2522); +name = "GQY1XT001EA4MU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2523(name, align); +seqs.push_back(newSeq2523); +name = "GQY1XT001E6KSQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-G-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2524(name, align); +seqs.push_back(newSeq2524); +name = "GQY1XT001E5F5G"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2525(name, align); +seqs.push_back(newSeq2525); +name = "GQY1XT001E2NOM"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2526(name, align); +seqs.push_back(newSeq2526); +name = "GQY1XT001E1YYS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-G-C-C--C--------CG-AGT-----G-AGGGG-T-GCG-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2527(name, align); +seqs.push_back(newSeq2527); +name = "GQY1XT001E1W7A"; +align = "C-G----T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-G--GT-A-G-CGGT-G-AAA--TGCC-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2528(name, align); +seqs.push_back(newSeq2528); +name = "GQY1XT001E1QXS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2529(name, align); +seqs.push_back(newSeq2529); +name = "GQY1XT001E14P0"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2530(name, align); +seqs.push_back(newSeq2530); +name = "GQY1XT001E0KUT"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-AG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2531(name, align); +seqs.push_back(newSeq2531); +name = "GQY1XT001E0684"; +align = "C-G----T--GA-A-A-C-T-G-G--CG---G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2532(name, align); +seqs.push_back(newSeq2532); +name = "GQY1XT001DZPW9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2533(name, align); +seqs.push_back(newSeq2533); +name = "GQY1XT001DZK4V"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GG-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2534(name, align); +seqs.push_back(newSeq2534); +name = "GQY1XT001DZDRG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2535(name, align); +seqs.push_back(newSeq2535); +name = "GQY1XT001DYZ2Q"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---C----AC-A-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2536(name, align); +seqs.push_back(newSeq2536); +name = "GQY1XT001DY77C"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-GTG-G-A--C--------TG-AC------C-C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2537(name, align); +seqs.push_back(newSeq2537); +name = "GQY1XT001DY30Y"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-G-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2538(name, align); +seqs.push_back(newSeq2538); +name = "GQY1XT001DXPG7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-CGG-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-GAC-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2539(name, align); +seqs.push_back(newSeq2539); +name = "GQY1XT001DXJEY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2540(name, align); +seqs.push_back(newSeq2540); +name = "GQY1XT001DWS7R"; +align = "C-G--T-T--GA-A-A-C-T-G-T--CG-G-G-C--T-C-G-A-A-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2541(name, align); +seqs.push_back(newSeq2541); +name = "GQY1XT001DWDQE"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2542(name, align); +seqs.push_back(newSeq2542); +name = "GQY1XT001DWAKO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2543(name, align); +seqs.push_back(newSeq2543); +name = "GQY1XT001DUOZH"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2544(name, align); +seqs.push_back(newSeq2544); +name = "GQY1XT001DUIYM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-C--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCCG-G-GCC-G------------ATT-GAGG--------C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2545(name, align); +seqs.push_back(newSeq2545); +name = "GQY1XT001DUBJQ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2546(name, align); +seqs.push_back(newSeq2546); +name = "GQY1XT001DTJB2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAG-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2547(name, align); +seqs.push_back(newSeq2547); +name = "GQY1XT001DRC21"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2548(name, align); +seqs.push_back(newSeq2548); +name = "GQY1XT001DOVY1"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAATGGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2549(name, align); +seqs.push_back(newSeq2549); +name = "GQY1XT001DNYAN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2550(name, align); +seqs.push_back(newSeq2550); +name = "GQY1XT001DNCE2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-TGG-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2551(name, align); +seqs.push_back(newSeq2551); +name = "GQY1XT001DMKCG"; +align = "C-T--T-A--GA-A-A-C-T-G-G--TA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GT-TA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2552(name, align); +seqs.push_back(newSeq2552); +name = "GQY1XT001DLSKT"; +align = "C-G--T-T--GA-A-A-CGT-G-GC-CG-G-C-C--T-C-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2553(name, align); +seqs.push_back(newSeq2553); +name = "GQY1XT001DKLBS"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GA--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGAATGAA"; +Sequence newSeq2554(name, align); +seqs.push_back(newSeq2554); +name = "GQY1XT001DKBL4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--CGA------AT-GG------G-G-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-A-G-C-A-ACGGTGAA"; +Sequence newSeq2555(name, align); +seqs.push_back(newSeq2555); +name = "GQY1XT001DIWN1"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G---T--------C-G--G-----------------G-C-A-A-C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2556(name, align); +seqs.push_back(newSeq2556); +name = "GQY1XT001DIEVS"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2557(name, align); +seqs.push_back(newSeq2557); +name = "GQY1XT001DHSDW"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-AGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2558(name, align); +seqs.push_back(newSeq2558); +name = "GQY1XT001DGZGE"; +align = "T-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G---G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-A--C---G----AC-A-----G-T-G-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGA-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2559(name, align); +seqs.push_back(newSeq2559); +name = "GQY1XT001DGFCV"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2560(name, align); +seqs.push_back(newSeq2560); +name = "GQY1XT001DFPDZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--CAA-CG-AAA-G-CGG-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAG-TTG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2561(name, align); +seqs.push_back(newSeq2561); +name = "GQY1XT001DF5YP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2562(name, align); +seqs.push_back(newSeq2562); +name = "GQY1XT001DEDYU"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2563(name, align); +seqs.push_back(newSeq2563); +name = "GQY1XT001DDOTJ"; +align = "C-G--T-T--G--A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--AG------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2564(name, align); +seqs.push_back(newSeq2564); +name = "GQY1XT001DDH6M"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A--------GA-AT------G-ATCCC-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2565(name, align); +seqs.push_back(newSeq2565); +name = "GQY1XT001DD43P"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-TGT-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----A--T-----G-G-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2566(name, align); +seqs.push_back(newSeq2566); +name = "GQY1XT001DAR0U"; +align = "T-T--C-T--AA-A-A-C-T-G-T--AT-G-A-C--T-T-G-A-G-T-G-C-AG-TA-G-A-G-G-T-T--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-A-G-GC-GAA-GG-CGG-C-TA-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G---G-G----------GTC-GA------A-C-C---T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2567(name, align); +seqs.push_back(newSeq2567); +name = "GQY1XT001DAFKD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2568(name, align); +seqs.push_back(newSeq2568); +name = "GQY1XT001DAC2U"; +align = "C-G--T-T--GA-A-A-C-T-G-A-CGT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2569(name, align); +seqs.push_back(newSeq2569); +name = "GQY1XT001DABXK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-CCAAAC-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2570(name, align); +seqs.push_back(newSeq2570); +name = "GQY1XT001D9S7R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2571(name, align); +seqs.push_back(newSeq2571); +name = "GQY1XT001D9I4B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2572(name, align); +seqs.push_back(newSeq2572); +name = "GQY1XT001D8PRO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2573(name, align); +seqs.push_back(newSeq2573); +name = "GQY1XT001D8BBD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2574(name, align); +seqs.push_back(newSeq2574); +name = "GQY1XT001D7ZPN"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-C-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2575(name, align); +seqs.push_back(newSeq2575); +name = "GQY1XT001D6M5O"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2576(name, align); +seqs.push_back(newSeq2576); +name = "GQY1XT001D5RB1"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-T--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2577(name, align); +seqs.push_back(newSeq2577); +name = "GQY1XT001D54SK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2578(name, align); +seqs.push_back(newSeq2578); +name = "GQY1XT001D477O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2579(name, align); +seqs.push_back(newSeq2579); +name = "GQY1XT001D2XTB"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2580(name, align); +seqs.push_back(newSeq2580); +name = "GQY1XT001D2GAU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2581(name, align); +seqs.push_back(newSeq2581); +name = "GQY1XT001D2742"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-G-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2582(name, align); +seqs.push_back(newSeq2582); +name = "GQY1XT001D22UC"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-AGG-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2583(name, align); +seqs.push_back(newSeq2583); +name = "GQY1XT001D0UBD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATC-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2584(name, align); +seqs.push_back(newSeq2584); +name = "GQY1XT001D042F"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2585(name, align); +seqs.push_back(newSeq2585); +name = "GQY1XT001D03O7"; +align = "C-G----T--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2586(name, align); +seqs.push_back(newSeq2586); +name = "GQY1XT001CZVKT"; +align = "A-T--C-A--GA-A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2587(name, align); +seqs.push_back(newSeq2587); +name = "GQY1XT001CZU7K"; +align = "C-G--T-T-GAA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--CAA-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2588(name, align); +seqs.push_back(newSeq2588); +name = "GQY1XT001CZQ2T"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2589(name, align); +seqs.push_back(newSeq2589); +name = "GQY1XT001CZLMA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-C-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2590(name, align); +seqs.push_back(newSeq2590); +name = "GQY1XT001CZ9WR"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2591(name, align); +seqs.push_back(newSeq2591); +name = "GQY1XT001CY98E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2592(name, align); +seqs.push_back(newSeq2592); +name = "GQY1XT001CXX5V"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2593(name, align); +seqs.push_back(newSeq2593); +name = "GQY1XT001CWVW0"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2594(name, align); +seqs.push_back(newSeq2594); +name = "GQY1XT001CWIPD"; +align = "A-T--A-T--AA-A-A-C-T-G-T--TT-A-A-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2595(name, align); +seqs.push_back(newSeq2595); +name = "GQY1XT001CWFGU"; +align = "ATT--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2596(name, align); +seqs.push_back(newSeq2596); +name = "GQY1XT001CW1IR"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GATTGGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2597(name, align); +seqs.push_back(newSeq2597); +name = "GQY1XT001CVOHN"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2598(name, align); +seqs.push_back(newSeq2598); +name = "GQY1XT001CVIV0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2599(name, align); +seqs.push_back(newSeq2599); +name = "GQY1XT001CUYCW"; +align = "A----T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2600(name, align); +seqs.push_back(newSeq2600); +name = "GQY1XT001CS85M"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G---G-G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2601(name, align); +seqs.push_back(newSeq2601); +name = "GQY1XT001CRNLX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CTCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2602(name, align); +seqs.push_back(newSeq2602); +name = "GQY1XT001CR03K"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CCG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-G-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2603(name, align); +seqs.push_back(newSeq2603); +name = "GQY1XT001CQF64"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2604(name, align); +seqs.push_back(newSeq2604); +name = "GQY1XT001CQE7X"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--CGG-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2605(name, align); +seqs.push_back(newSeq2605); +name = "GQY1XT001CPXGG"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2606(name, align); +seqs.push_back(newSeq2606); +name = "GQY1XT001CNBWQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2607(name, align); +seqs.push_back(newSeq2607); +name = "GQY1XT001CL6NZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2608(name, align); +seqs.push_back(newSeq2608); +name = "GQY1XT001CL13S"; +align = "G-T--T-C--AA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-G-G-AG-TA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2609(name, align); +seqs.push_back(newSeq2609); +name = "GQY1XT001CKXY1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2610(name, align); +seqs.push_back(newSeq2610); +name = "GQY1XT001CJU75"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2611(name, align); +seqs.push_back(newSeq2611); +name = "GQY1XT001CGYXS"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-GTC--C-------GAA-TGAG----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2612(name, align); +seqs.push_back(newSeq2612); +name = "GQY1XT001CGEXZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2613(name, align); +seqs.push_back(newSeq2613); +name = "GQY1XT001CFOI3"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-GAG-GTT--------TCC-GC--------C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2614(name, align); +seqs.push_back(newSeq2614); +name = "GQY1XT001CFK1I"; +align = "A-A--C-C--AA-A-A-C-T-A-T--TA-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AT-G-T-A--G-G-A-G-G--T---A---TCG-A-----C-T-C-C-T-T-C-T-G-C-G-T-C--G---CAG-T-T-AA-C-A-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2615(name, align); +seqs.push_back(newSeq2615); +name = "GQY1XT001CEZSI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2616(name, align); +seqs.push_back(newSeq2616); +name = "GQY1XT001CDXSI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2617(name, align); +seqs.push_back(newSeq2617); +name = "GQY1XT001CDVGA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-G-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2618(name, align); +seqs.push_back(newSeq2618); +name = "GQY1XT001CCEVI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2619(name, align); +seqs.push_back(newSeq2619); +name = "GQY1XT001CC81T"; +align = "C-G--T-T--GA-A-A-C-T-G-G-----G-G-C--C-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2620(name, align); +seqs.push_back(newSeq2620); +name = "GQY1XT001CAPQV"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2621(name, align); +seqs.push_back(newSeq2621); +name = "GQY1XT001CAKFP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-GTCCGG-T-C-C-G------------ATT-GAGG--------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2622(name, align); +seqs.push_back(newSeq2622); +name = "GQY1XT001CAK22"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2623(name, align); +seqs.push_back(newSeq2623); +name = "GQY1XT001CAHF0"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G---T--C-G-G-C-G--G---G----CA-AA----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2624(name, align); +seqs.push_back(newSeq2624); +name = "GQY1XT001CACEV"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G----------GCA-AA-GC-----C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2625(name, align); +seqs.push_back(newSeq2625); +name = "GQY1XT001C9E0N"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-GTT-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-AGG-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2626(name, align); +seqs.push_back(newSeq2626); +name = "GQY1XT001C94DM"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--GG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2627(name, align); +seqs.push_back(newSeq2627); +name = "GQY1XT001C9343"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-CT-T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2628(name, align); +seqs.push_back(newSeq2628); +name = "GQY1XT001C8Y34"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2629(name, align); +seqs.push_back(newSeq2629); +name = "GQY1XT001C85B2"; +align = "A-T--C-A--G--A-A-C-T-G-T--TG-A-A-C----T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2630(name, align); +seqs.push_back(newSeq2630); +name = "GQY1XT001C6M6H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2631(name, align); +seqs.push_back(newSeq2631); +name = "GQY1XT001C5IR3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C-------TTC-GGC-----T-C---T-G-G-G-T-G-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2632(name, align); +seqs.push_back(newSeq2632); +name = "GQY1XT001C4RLX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2633(name, align); +seqs.push_back(newSeq2633); +name = "GQY1XT001C4R21"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T----G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2634(name, align); +seqs.push_back(newSeq2634); +name = "GQY1XT001C4G56"; +align = "C-G--T-T--GA-A-A-C-T-G-GT-TT-T-T-CT-T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2635(name, align); +seqs.push_back(newSeq2635); +name = "GQY1XT001C42HX"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2636(name, align); +seqs.push_back(newSeq2636); +name = "GQY1XT001C2UUY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2637(name, align); +seqs.push_back(newSeq2637); +name = "GQY1XT001BYRAT"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2638(name, align); +seqs.push_back(newSeq2638); +name = "GQY1XT001BYR1O"; +align = "A-T--T-C--AA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------CGT-CA--A-----G-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2639(name, align); +seqs.push_back(newSeq2639); +name = "GQY1XT001BY259"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2640(name, align); +seqs.push_back(newSeq2640); +name = "GQY1XT001BWW4P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A--------GA-AT------G-ATCCC-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2641(name, align); +seqs.push_back(newSeq2641); +name = "GQY1XT001BWNZB"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA---G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-G-A-G-GT-G-T-C--G-G-G-A-G--G---C----AG-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2642(name, align); +seqs.push_back(newSeq2642); +name = "GQY1XT001BWFU4"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-GAA-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGAG----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2643(name, align); +seqs.push_back(newSeq2643); +name = "GQY1XT001BW0IA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2644(name, align); +seqs.push_back(newSeq2644); +name = "GQY1XT001BVWMR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2645(name, align); +seqs.push_back(newSeq2645); +name = "GQY1XT001BSZ5K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGCGAA"; +Sequence newSeq2646(name, align); +seqs.push_back(newSeq2646); +name = "GQY1XT001BS3HC"; +align = "T-T--T-A--GA-A-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GT-TA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2647(name, align); +seqs.push_back(newSeq2647); +name = "GQY1XT001BRFWE"; +align = "A-T--C-A--GA-A-A-C-T-GTT--TG-A-A-C--T-T-G-A-G-T-G-C-AA-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA--CCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2648(name, align); +seqs.push_back(newSeq2648); +name = "GQY1XT001BQVU9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2649(name, align); +seqs.push_back(newSeq2649); +name = "GQY1XT001BQQH8"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2650(name, align); +seqs.push_back(newSeq2650); +name = "GQY1XT001BQCEO"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G---G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2651(name, align); +seqs.push_back(newSeq2651); +name = "GQY1XT001BQ5GN"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2652(name, align); +seqs.push_back(newSeq2652); +name = "GQY1XT001BODSF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2653(name, align); +seqs.push_back(newSeq2653); +name = "GQY1XT001BKZES"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2654(name, align); +seqs.push_back(newSeq2654); +name = "GQY1XT001BKPHF"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-G-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2655(name, align); +seqs.push_back(newSeq2655); +name = "GQY1XT001BJ3SU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2656(name, align); +seqs.push_back(newSeq2656); +name = "GQY1XT001BJ1XX"; +align = "G-A--T-C--GA-A-A-C-T-G-T--TC-A-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A----------GCA-AA-GC-----T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2657(name, align); +seqs.push_back(newSeq2657); +name = "GQY1XT001BIZCD"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G--T---T----TC-G-----A-T-G-C-T-A-CTA-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2658(name, align); +seqs.push_back(newSeq2658); +name = "GQY1XT001BIPNI"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2659(name, align); +seqs.push_back(newSeq2659); +name = "GQY1XT001BIGP0"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2660(name, align); +seqs.push_back(newSeq2660); +name = "GQY1XT001BH2BI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2661(name, align); +seqs.push_back(newSeq2661); +name = "GQY1XT001BFJXC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2662(name, align); +seqs.push_back(newSeq2662); +name = "GQY1XT001BF5FW"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATG-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2663(name, align); +seqs.push_back(newSeq2663); +name = "GQY1XT001BF0VF"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2664(name, align); +seqs.push_back(newSeq2664); +name = "GQY1XT001BECMA"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2665(name, align); +seqs.push_back(newSeq2665); +name = "GQY1XT001BE5XX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2666(name, align); +seqs.push_back(newSeq2666); +name = "GQY1XT001BDYDN"; +align = "T-T--T-G-GAA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-TG-G-G-G-G-A--C---C----AA-G-----G-T-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2667(name, align); +seqs.push_back(newSeq2667); +name = "GQY1XT001BDF2Y"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2668(name, align); +seqs.push_back(newSeq2668); +name = "GQY1XT001BCJXM"; +align = "A-T--T-T--GA-A-A-C-T-G----TT-T-C-C--C-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA--C-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2669(name, align); +seqs.push_back(newSeq2669); +name = "GQY1XT001BCJTJ"; +align = "C-G----T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2670(name, align); +seqs.push_back(newSeq2670); +name = "GQY1XT001BCBWQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2671(name, align); +seqs.push_back(newSeq2671); +name = "GQY1XT001BBYRK"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--T-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AT--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2672(name, align); +seqs.push_back(newSeq2672); +name = "GQY1XT001BBTI4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TC-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2673(name, align); +seqs.push_back(newSeq2673); +name = "GQY1XT001BBE9K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2674(name, align); +seqs.push_back(newSeq2674); +name = "GQY1XT001BB4X7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2675(name, align); +seqs.push_back(newSeq2675); +name = "GQY1XT001BAVPM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2676(name, align); +seqs.push_back(newSeq2676); +name = "GQY1XT001BACNK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2677(name, align); +seqs.push_back(newSeq2677); +name = "GQY1XT001B7N9C"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-ACGG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-GCC-G--A--------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2678(name, align); +seqs.push_back(newSeq2678); +name = "GQY1XT001B7EVD"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2679(name, align); +seqs.push_back(newSeq2679); +name = "GQY1XT001B637B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2680(name, align); +seqs.push_back(newSeq2680); +name = "GQY1XT001B5QTM"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2681(name, align); +seqs.push_back(newSeq2681); +name = "GQY1XT001B586P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2682(name, align); +seqs.push_back(newSeq2682); +name = "GQY1XT001B31Y2"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2683(name, align); +seqs.push_back(newSeq2683); +name = "GQY1XT001B2LJX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2684(name, align); +seqs.push_back(newSeq2684); +name = "GQY1XT001B2CND"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2685(name, align); +seqs.push_back(newSeq2685); +name = "GQY1XT001B26ZN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGC-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2686(name, align); +seqs.push_back(newSeq2686); +name = "GQY1XT001B1FPP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGTG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2687(name, align); +seqs.push_back(newSeq2687); +name = "GQY1XT001B1BHQ"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TA-C-C-A-G-CT-G-T-C--C-G-G-G-GC-C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2688(name, align); +seqs.push_back(newSeq2688); +name = "GQY1XT001AZUBU"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2689(name, align); +seqs.push_back(newSeq2689); +name = "GQY1XT001AZU52"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-GTC--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2690(name, align); +seqs.push_back(newSeq2690); +name = "GQY1XT001AYT4G"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-GT-ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2691(name, align); +seqs.push_back(newSeq2691); +name = "GQY1XT001AYPVB"; +align = "G-T--T-C--CG-A-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-G-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GG--CG-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AC-CT-T------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq2692(name, align); +seqs.push_back(newSeq2692); +name = "GQY1XT001AY3TM"; +align = "..T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2693(name, align); +seqs.push_back(newSeq2693); +name = "GQY1XT001AWZCV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2694(name, align); +seqs.push_back(newSeq2694); +name = "GQY1XT001AWRFH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2695(name, align); +seqs.push_back(newSeq2695); +name = "GQY1XT001AU8IP"; +align = "A-A--C-T--AA-A-A-C-T-G-A--TA-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-T-G--T-------GAT-AA------A-C-G-C-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2696(name, align); +seqs.push_back(newSeq2696); +name = "GQY1XT001ATYMR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2697(name, align); +seqs.push_back(newSeq2697); +name = "GQY1XT001ATWPZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2698(name, align); +seqs.push_back(newSeq2698); +name = "GQY1XT001ATIMP"; +align = "G-C--C-C--CG-A-A-C-T-G-T--GA-G-T-C--T-C-G-A-G-T-G-T-GG-TA-G-G-G-G-A-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-CT-T--CTGG-GC-CA-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-GG--CA-C-T-A-G-GT-G-T-G--G-G-C-G-A-----------CA-CA-G------T-C-G-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-TGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq2699(name, align); +seqs.push_back(newSeq2699); +name = "GQY1XT001ATCV1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2700(name, align); +seqs.push_back(newSeq2700); +name = "GQY1XT001ASY0A"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2701(name, align); +seqs.push_back(newSeq2701); +name = "GQY1XT001ASSY3"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GGA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2702(name, align); +seqs.push_back(newSeq2702); +name = "GQY1XT001ARTOG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2703(name, align); +seqs.push_back(newSeq2703); +name = "GQY1XT001ARQXX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-C-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2704(name, align); +seqs.push_back(newSeq2704); +name = "GQY1XT001AR1EX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2705(name, align); +seqs.push_back(newSeq2705); +name = "GQY1XT001AQ7P5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2706(name, align); +seqs.push_back(newSeq2706); +name = "GQY1XT001APQN8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2707(name, align); +seqs.push_back(newSeq2707); +name = "GQY1XT001APIAZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCCG-G-GCC-GA-----------ATG-GGG---------C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2708(name, align); +seqs.push_back(newSeq2708); +name = "GQY1XT001AO87U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2709(name, align); +seqs.push_back(newSeq2709); +name = "GQY1XT001AN6AX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2710(name, align); +seqs.push_back(newSeq2710); +name = "GQY1XT001AM894"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2711(name, align); +seqs.push_back(newSeq2711); +name = "GQY1XT001ALN0X"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-GAAA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAATGGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2712(name, align); +seqs.push_back(newSeq2712); +name = "GQY1XT001AKNCJ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2713(name, align); +seqs.push_back(newSeq2713); +name = "GQY1XT001AKAZ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTGG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2714(name, align); +seqs.push_back(newSeq2714); +name = "GQY1XT001AJD71"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2715(name, align); +seqs.push_back(newSeq2715); +name = "GQY1XT001AJCX3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2716(name, align); +seqs.push_back(newSeq2716); +name = "GQY1XT001AHDII"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2717(name, align); +seqs.push_back(newSeq2717); +name = "GQY1XT001AH7BT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2718(name, align); +seqs.push_back(newSeq2718); +name = "GQY1XT001AH30T"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-G-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGATGAA"; +Sequence newSeq2719(name, align); +seqs.push_back(newSeq2719); +name = "GQY1XT001AFS2O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G---G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2720(name, align); +seqs.push_back(newSeq2720); +name = "GQY1XT001AF7GX"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-GAG-----------CA-AA--------AGCTCTT-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2721(name, align); +seqs.push_back(newSeq2721); +name = "GQY1XT001AE2FW"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-GAG-G--T---T----TC-C-----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2722(name, align); +seqs.push_back(newSeq2722); +name = "GQY1XT001A9NHQ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2723(name, align); +seqs.push_back(newSeq2723); +name = "GQY1XT001A79AD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2724(name, align); +seqs.push_back(newSeq2724); +name = "GQY1XT001A61DU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2725(name, align); +seqs.push_back(newSeq2725); +name = "GQY1XT001A4ZU2"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2726(name, align); +seqs.push_back(newSeq2726); +name = "GQY1XT001A3P4Z"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C-----A-AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2727(name, align); +seqs.push_back(newSeq2727); +name = "GQY1XT001A3602"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2728(name, align); +seqs.push_back(newSeq2728); +name = "GQY1XT001A2IMA"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-GAAA-A-G-C-GTT-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2729(name, align); +seqs.push_back(newSeq2729); +name = "GQY1XT001A2AND"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2730(name, align); +seqs.push_back(newSeq2730); +name = "GQY1XT001A28M3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2731(name, align); +seqs.push_back(newSeq2731); +name = "GQY1XT001A20I8"; +align = "A-T--CAA--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T----G-G-T-G--G---G----CA-AA----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2732(name, align); +seqs.push_back(newSeq2732); +name = "GQY1XT001A1KL2"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2733(name, align); +seqs.push_back(newSeq2733); +name = "GQY1XT001A1EIN"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-A-T-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-CG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2734(name, align); +seqs.push_back(newSeq2734); +name = "GQY1XT001A18SE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2735(name, align); +seqs.push_back(newSeq2735); +name = "GQY1XT001A0YTE"; +align = "C-G--T-T--GA-A-A-C-TGG-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2736(name, align); +seqs.push_back(newSeq2736); +name = "GQY1XT001A0UZX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T-G-G-GCGGA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GC-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-TGG--C-------GAA-TGA-----G-CGG-C-T-G-G-G-C-G-G-T--AC--A-GAC-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TAC-CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2737(name, align); +seqs.push_back(newSeq2737); +name = "GQY1XT001A01Z9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2738(name, align); +seqs.push_back(newSeq2738); +name = "GQY1XT001CQPF6"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C----TA-A-----G-C-A-T-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2739(name, align); +seqs.push_back(newSeq2739); +name = "GQY1XT001ESPNA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2740(name, align); +seqs.push_back(newSeq2740); +name = "GQY1XT001EFY7C"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2741(name, align); +seqs.push_back(newSeq2741); +name = "GQY1XT001C52ON"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G---T----G-G-G-G--G-------GAC-TGA-----C-C-C-CTT-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2742(name, align); +seqs.push_back(newSeq2742); +name = "GQY1XT001AFREK"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----AA-A-----GAA-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2743(name, align); +seqs.push_back(newSeq2743); +name = "GQY1XT001A2KKR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2744(name, align); +seqs.push_back(newSeq2744); +name = "GQY1XT001EUDI9"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-T-C-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G---G----AT-T-----GAC-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2745(name, align); +seqs.push_back(newSeq2745); +name = "GQY1XT001EQAG9"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-CG-G-G-G-C----A---C----AT-AA----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2746(name, align); +seqs.push_back(newSeq2746); +name = "GQY1XT001EKQ9B"; +align = "G-T--C-C--CG-A-A-C-T-G-G--GC-G-C-C--T-C-G-A-G-C-G-C-GG-TA-G-G-G-G-A-G--AT-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-A-TC-T--CTGG-GC-CG-C-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-GTT-G--G-GAG-GTT-----------TC-CG-C------C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2747(name, align); +seqs.push_back(newSeq2747); +name = "GQY1XT001EGMEX"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA--A----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2748(name, align); +seqs.push_back(newSeq2748); +name = "GQY1XT001EAPDN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2749(name, align); +seqs.push_back(newSeq2749); +name = "GQY1XT001EAEI8"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-GAG-G-T--A--------TC-GA------C-T-C-CTT-C-T-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GT-C-G-C-A-AGACTAAA"; +Sequence newSeq2750(name, align); +seqs.push_back(newSeq2750); +name = "GQY1XT001DZOIH"; +align = "A-T--T-T--GA-A-A-C-T-A-T--TG-G-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2751(name, align); +seqs.push_back(newSeq2751); +name = "GQY1XT001DRPMC"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2752(name, align); +seqs.push_back(newSeq2752); +name = "GQY1XT001DD10D"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2753(name, align); +seqs.push_back(newSeq2753); +name = "GQY1XT001DCLB4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2754(name, align); +seqs.push_back(newSeq2754); +name = "GQY1XT001DBLYX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2755(name, align); +seqs.push_back(newSeq2755); +name = "GQY1XT001D7R6H"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2756(name, align); +seqs.push_back(newSeq2756); +name = "GQY1XT001D5MDQ"; +align = "A-A--G-C--AA-A-A-C-T-G-T--AT-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-G-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-AG-A-A-ACT--GACA-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-T-G-A--T-------GAT-AA------G-T-C-A-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2757(name, align); +seqs.push_back(newSeq2757); +name = "GQY1XT001CH6AQ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--A---C----GA-A-----G-T-T-C-T-G-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2758(name, align); +seqs.push_back(newSeq2758); +name = "GQY1XT001CFTQ9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2759(name, align); +seqs.push_back(newSeq2759); +name = "GQY1XT001C3X6G"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2760(name, align); +seqs.push_back(newSeq2760); +name = "GQY1XT001C0QXK"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2761(name, align); +seqs.push_back(newSeq2761); +name = "GQY1XT001BP0RL"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2762(name, align); +seqs.push_back(newSeq2762); +name = "GQY1XT001BOY57"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2763(name, align); +seqs.push_back(newSeq2763); +name = "GQY1XT001BJS15"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2764(name, align); +seqs.push_back(newSeq2764); +name = "GQY1XT001BDVFC"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2765(name, align); +seqs.push_back(newSeq2765); +name = "GQY1XT001AO05Y"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C---G----AT-T-----GAG-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2766(name, align); +seqs.push_back(newSeq2766); +name = "GQY1XT001EZ0IY"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GGAA-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2767(name, align); +seqs.push_back(newSeq2767); +name = "GQY1XT001EYPY1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2768(name, align); +seqs.push_back(newSeq2768); +name = "GQY1XT001EXYD1"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2769(name, align); +seqs.push_back(newSeq2769); +name = "GQY1XT001EXLNQ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2770(name, align); +seqs.push_back(newSeq2770); +name = "GQY1XT001EX03D"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AA-A-G-C--T-G-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2771(name, align); +seqs.push_back(newSeq2771); +name = "GQY1XT001EWN6H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGAG----A-T-C-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2772(name, align); +seqs.push_back(newSeq2772); +name = "GQY1XT001EWEG9"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CTGG-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2773(name, align); +seqs.push_back(newSeq2773); +name = "GQY1XT001EWDMI"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq2774(name, align); +seqs.push_back(newSeq2774); +name = "GQY1XT001EVM9I"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2775(name, align); +seqs.push_back(newSeq2775); +name = "GQY1XT001EVEML"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2776(name, align); +seqs.push_back(newSeq2776); +name = "GQY1XT001EUUVE"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2777(name, align); +seqs.push_back(newSeq2777); +name = "GQY1XT001EUUH0"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2778(name, align); +seqs.push_back(newSeq2778); +name = "GQY1XT001EUI4W"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-GG----A-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2779(name, align); +seqs.push_back(newSeq2779); +name = "GQY1XT001ETVRK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GTGGT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2780(name, align); +seqs.push_back(newSeq2780); +name = "GQY1XT001ETGG3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A-TGG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2781(name, align); +seqs.push_back(newSeq2781); +name = "GQY1XT001ETFRQ"; +align = "A-C--T-G--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2782(name, align); +seqs.push_back(newSeq2782); +name = "GQY1XT001ESSG9"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CA-G-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2783(name, align); +seqs.push_back(newSeq2783); +name = "GQY1XT001ESMTR"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-AG--G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TTG---CTGG-AC-AG-TA--ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2784(name, align); +seqs.push_back(newSeq2784); +name = "GQY1XT001ES38D"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--G-G-C-A-A--G------------G----A-A-T-T-G-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2785(name, align); +seqs.push_back(newSeq2785); +name = "GQY1XT001ERZRE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GGCG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2786(name, align); +seqs.push_back(newSeq2786); +name = "GQY1XT001ERS7R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2787(name, align); +seqs.push_back(newSeq2787); +name = "GQY1XT001ERPCN"; +align = "A----T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGAATGAA"; +Sequence newSeq2788(name, align); +seqs.push_back(newSeq2788); +name = "GQY1XT001ERK36"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2789(name, align); +seqs.push_back(newSeq2789); +name = "GQY1XT001ERI8E"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2790(name, align); +seqs.push_back(newSeq2790); +name = "GQY1XT001ERHVC"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AT-G-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AA----G-C-T-T-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2791(name, align); +seqs.push_back(newSeq2791); +name = "GQY1XT001ERBDS"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--CGG-G-G-G----------GAT-TG-AC-----C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2792(name, align); +seqs.push_back(newSeq2792); +name = "GQY1XT001ER672"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-C-C-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C---G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2793(name, align); +seqs.push_back(newSeq2793); +name = "GQY1XT001EQQCT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-ATAG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2794(name, align); +seqs.push_back(newSeq2794); +name = "GQY1XT001EQPNK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-A-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2795(name, align); +seqs.push_back(newSeq2795); +name = "GQY1XT001EPXUN"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2796(name, align); +seqs.push_back(newSeq2796); +name = "GQY1XT001EOXJY"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-TG-G-G-A-G-G--T--------TT-CC------GCC-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2797(name, align); +seqs.push_back(newSeq2797); +name = "GQY1XT001EOG66"; +align = "A-T--T-G--GA-A-A-C-T-A-C--CG-A-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GTGG-T-C--G-G-G-G-G--G---C----AT-T-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2798(name, align); +seqs.push_back(newSeq2798); +name = "GQY1XT001ENTKH"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2799(name, align); +seqs.push_back(newSeq2799); +name = "GQY1XT001ENGO0"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-TAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-G-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2800(name, align); +seqs.push_back(newSeq2800); +name = "GQY1XT001EMYG1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2801(name, align); +seqs.push_back(newSeq2801); +name = "GQY1XT001EMJ56"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-G--A---C----AA-A-----G-T-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2802(name, align); +seqs.push_back(newSeq2802); +name = "GQY1XT001EL6BO"; +align = "T-C--G-T--AG-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2803(name, align); +seqs.push_back(newSeq2803); +name = "GQY1XT001EL11Y"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2804(name, align); +seqs.push_back(newSeq2804); +name = "GQY1XT001EKMUS"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----GA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2805(name, align); +seqs.push_back(newSeq2805); +name = "GQY1XT001EIRP1"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2806(name, align); +seqs.push_back(newSeq2806); +name = "GQY1XT001EI2G3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--CGG-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-GAAA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2807(name, align); +seqs.push_back(newSeq2807); +name = "GQY1XT001EI08T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2808(name, align); +seqs.push_back(newSeq2808); +name = "GQY1XT001EHIY8"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2809(name, align); +seqs.push_back(newSeq2809); +name = "GQY1XT001EH7HS"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2810(name, align); +seqs.push_back(newSeq2810); +name = "GQY1XT001EH4XS"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2811(name, align); +seqs.push_back(newSeq2811); +name = "GQY1XT001EGCSH"; +align = "C-G--T-G--GA-A-A-C-C-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-AG-TA-G-A-G-G-A-T--CG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-GA-T--CTGG-GC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-C-AT-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-GAG-GTT---------TC-CG--------C-CTC-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2812(name, align); +seqs.push_back(newSeq2812); +name = "GQY1XT001EG8TX"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C----TA-A-----G-C-A-T-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2813(name, align); +seqs.push_back(newSeq2813); +name = "GQY1XT001EFOMH"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-C-GG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGAC----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2814(name, align); +seqs.push_back(newSeq2814); +name = "GQY1XT001EFH1N"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2815(name, align); +seqs.push_back(newSeq2815); +name = "GQY1XT001EFD5H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CCC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2816(name, align); +seqs.push_back(newSeq2816); +name = "GQY1XT001EFBVD"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-T-G-A-G-T-G-C-AG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-T-G-A--G---C----AA-A-----G-C-T-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2817(name, align); +seqs.push_back(newSeq2817); +name = "GQY1XT001EFB3L"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-C-G--------C----CA-TA----G-G-C-G-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2818(name, align); +seqs.push_back(newSeq2818); +name = "GQY1XT001EF074"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2819(name, align); +seqs.push_back(newSeq2819); +name = "GQY1XT001EETIS"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CG-C-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2820(name, align); +seqs.push_back(newSeq2820); +name = "GQY1XT001EEKHZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2821(name, align); +seqs.push_back(newSeq2821); +name = "GQY1XT001EE6EW"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG--AA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G----------TAT-TA-AG-----C-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2822(name, align); +seqs.push_back(newSeq2822); +name = "GQY1XT001EDZ0Y"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2823(name, align); +seqs.push_back(newSeq2823); +name = "GQY1XT001EDOTS"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G--T---A----TT-A-----A-G-C-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2824(name, align); +seqs.push_back(newSeq2824); +name = "GQY1XT001ED3XA"; +align = "A----T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2825(name, align); +seqs.push_back(newSeq2825); +name = "GQY1XT001EBVPB"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2826(name, align); +seqs.push_back(newSeq2826); +name = "GQY1XT001EBDZ0"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C---A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2827(name, align); +seqs.push_back(newSeq2827); +name = "GQY1XT001EBD2E"; +align = "A-T--T-T--GA-A-A-C-T---G--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2828(name, align); +seqs.push_back(newSeq2828); +name = "GQY1XT001EAZ0R"; +align = "A-T--C-A--G--A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-C-GT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GGCCGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAA-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-CGT-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2829(name, align); +seqs.push_back(newSeq2829); +name = "GQY1XT001EAIUO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2830(name, align); +seqs.push_back(newSeq2830); +name = "GQY1XT001E3APG"; +align = "C-G----T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG--C-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2831(name, align); +seqs.push_back(newSeq2831); +name = "GQY1XT001E1YLT"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2832(name, align); +seqs.push_back(newSeq2832); +name = "GQY1XT001E11Z6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2833(name, align); +seqs.push_back(newSeq2833); +name = "GQY1XT001E0NF1"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AT-G-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-T-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2834(name, align); +seqs.push_back(newSeq2834); +name = "GQY1XT001DZLBF"; +align = "A-A--T-T--GA-A-A-C-T-G-G--CG-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-GCC-T-A-----------TT-AA--------G-G-G-T-C-G-G-T-G-C-C--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2835(name, align); +seqs.push_back(newSeq2835); +name = "GQY1XT001DZ3WH"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-A-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2836(name, align); +seqs.push_back(newSeq2836); +name = "GQY1XT001DZ0YL"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CGG-----G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2837(name, align); +seqs.push_back(newSeq2837); +name = "GQY1XT001DY5A4"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-T-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2838(name, align); +seqs.push_back(newSeq2838); +name = "GQY1XT001DY3E7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2839(name, align); +seqs.push_back(newSeq2839); +name = "GQY1XT001DXHGE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2840(name, align); +seqs.push_back(newSeq2840); +name = "GQY1XT001DXH1N"; +align = "A-T--T-T--GA-A-A-C-T-G-T--GT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-G-T--G-G-G-G-G----------ACT-GA-CC-----C-C-C---C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2841(name, align); +seqs.push_back(newSeq2841); +name = "GQY1XT001DX618"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CGTTT-C-G-C-A-AGAATGAA"; +Sequence newSeq2842(name, align); +seqs.push_back(newSeq2842); +name = "GQY1XT001DV9A2"; +align = "A-T--A-A--GA-A-A-C-T-G-T--CG-G-A-C--T-T-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GT--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--G-G-C-A-A-----------GG-AA--------T-T-G-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2843(name, align); +seqs.push_back(newSeq2843); +name = "GQY1XT001DV1JX"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-C-C--C---C----AT-T-----G-G-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2844(name, align); +seqs.push_back(newSeq2844); +name = "GQY1XT001DUYA6"; +align = "T-T--T-G--GA-A-A-CTT-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2845(name, align); +seqs.push_back(newSeq2845); +name = "GQY1XT001DUKLW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2846(name, align); +seqs.push_back(newSeq2846); +name = "GQY1XT001DU09X"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-TA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2847(name, align); +seqs.push_back(newSeq2847); +name = "GQY1XT001DTGU0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2848(name, align); +seqs.push_back(newSeq2848); +name = "GQY1XT001DSN5G"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-T-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-TAG--G-G-G-G-T----------ATC-GA-CT-----C-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2849(name, align); +seqs.push_back(newSeq2849); +name = "GQY1XT001DSLA5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2850(name, align); +seqs.push_back(newSeq2850); +name = "GQY1XT001DRU1T"; +align = "A-A--C-C--AA-A-A-C-T-A-T--TA-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G--T-------ATT-AA------G-C-C-T-T-C-T-G-T-G-C-C---GT-C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2851(name, align); +seqs.push_back(newSeq2851); +name = "GQY1XT001DPY63"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CTGG-T-C--C-G-G-C-C--C-------GATTGGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2852(name, align); +seqs.push_back(newSeq2852); +name = "GQY1XT001DPE3X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2853(name, align); +seqs.push_back(newSeq2853); +name = "GQY1XT001DP0JO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2854(name, align); +seqs.push_back(newSeq2854); +name = "GQY1XT001DOY1X"; +align = "A-T--C-A--G--A-A-C-T-G-T--TG-A-A-C--T-T-A-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAG-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2855(name, align); +seqs.push_back(newSeq2855); +name = "GQY1XT001DOWC4"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G--------GA-CGA-----T-C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGC-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq2856(name, align); +seqs.push_back(newSeq2856); +name = "GQY1XT001DO8JK"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-T-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-ATTC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2857(name, align); +seqs.push_back(newSeq2857); +name = "GQY1XT001DO5K9"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G---T--C-G-G-G------------CAA-CCG-----------G-T-----G-C-T-G-----A--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2858(name, align); +seqs.push_back(newSeq2858); +name = "GQY1XT001DO0UV"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----GA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2859(name, align); +seqs.push_back(newSeq2859); +name = "GQY1XT001DMXH6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-ACGG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2860(name, align); +seqs.push_back(newSeq2860); +name = "GQY1XT001DMVV9"; +align = "A----T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-C-G-G-G----------ACT-GA-CC-----C-C-T-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGGAGG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2861(name, align); +seqs.push_back(newSeq2861); +name = "GQY1XT001DM438"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-C-G--C---C----AT-A-----G-G-C-G-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2862(name, align); +seqs.push_back(newSeq2862); +name = "GQY1XT001DLHT6"; +align = "T-T--T----GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----AA-G-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2863(name, align); +seqs.push_back(newSeq2863); +name = "GQY1XT001DLEJH"; +align = "C-G--T-T--GA-A-A-C-T---G--AT-T-G-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2864(name, align); +seqs.push_back(newSeq2864); +name = "GQY1XT001DL4E7"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2865(name, align); +seqs.push_back(newSeq2865); +name = "GQY1XT001DL25U"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-TGCC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATCGG-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAAGTGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2866(name, align); +seqs.push_back(newSeq2866); +name = "GQY1XT001DKSRV"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2867(name, align); +seqs.push_back(newSeq2867); +name = "GQY1XT001DKLMW"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2868(name, align); +seqs.push_back(newSeq2868); +name = "GQY1XT001DJ4FI"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-A-G-----------AT-CA-AA-----C-T-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2869(name, align); +seqs.push_back(newSeq2869); +name = "GQY1XT001DGZES"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-C--A---C---ATA-A-----G-T-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2870(name, align); +seqs.push_back(newSeq2870); +name = "GQY1XT001DGTAF"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-A-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2871(name, align); +seqs.push_back(newSeq2871); +name = "GQY1XT001DGRU5"; +align = "T-T--T-G--GA-A-A-CTT-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2872(name, align); +seqs.push_back(newSeq2872); +name = "GQY1XT001DG30A"; +align = "A-T--T-T--GG-A-A-C-T-G-T--AT-A-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2873(name, align); +seqs.push_back(newSeq2873); +name = "GQY1XT001DFJGD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2874(name, align); +seqs.push_back(newSeq2874); +name = "GQY1XT001DFHOP"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2875(name, align); +seqs.push_back(newSeq2875); +name = "GQY1XT001DFBTA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--TAG-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2876(name, align); +seqs.push_back(newSeq2876); +name = "GQY1XT001DF70T"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2877(name, align); +seqs.push_back(newSeq2877); +name = "GQY1XT001DEB0Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2878(name, align); +seqs.push_back(newSeq2878); +name = "GQY1XT001DDVL1"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-CG-T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2879(name, align); +seqs.push_back(newSeq2879); +name = "GQY1XT001DDUZD"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T----G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2880(name, align); +seqs.push_back(newSeq2880); +name = "GQY1XT001DD4N2"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-TC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-GTG-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2881(name, align); +seqs.push_back(newSeq2881); +name = "GQY1XT001DCJII"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2882(name, align); +seqs.push_back(newSeq2882); +name = "GQY1XT001DCAT8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2883(name, align); +seqs.push_back(newSeq2883); +name = "GQY1XT001DBA8M"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T---A-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2884(name, align); +seqs.push_back(newSeq2884); +name = "GQY1XT001DAI5C"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2885(name, align); +seqs.push_back(newSeq2885); +name = "GQY1XT001D9S3I"; +align = "T-T--T-A--GA-A-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G---C--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G---T----C-G---G--G---T----TA-CC----G---------------G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2886(name, align); +seqs.push_back(newSeq2886); +name = "GQY1XT001D9OYH"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2887(name, align); +seqs.push_back(newSeq2887); +name = "GQY1XT001D8ZVZ"; +align = "T-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-TCC--G-G-T-G-C--G---A----AT-G-----A-G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2888(name, align); +seqs.push_back(newSeq2888); +name = "GQY1XT001D8WTL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-T-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2889(name, align); +seqs.push_back(newSeq2889); +name = "GQY1XT001D8UUW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-GAAAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2890(name, align); +seqs.push_back(newSeq2890); +name = "GQY1XT001D88NT"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G--A---C----TG-A-----C-C-C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2891(name, align); +seqs.push_back(newSeq2891); +name = "GQY1XT001D7ZIX"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2892(name, align); +seqs.push_back(newSeq2892); +name = "GQY1XT001D7FAQ"; +align = "A-T--T-T--GA-A-A-CGT-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-CTA-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--GCG-G-G-G----------ACT-GA-C------C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2893(name, align); +seqs.push_back(newSeq2893); +name = "GQY1XT001D7A8I"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2894(name, align); +seqs.push_back(newSeq2894); +name = "GQY1XT001D661K"; +align = "A-C--T-C--GG-A-A-C-T-G-G--CG-T-G-C--T-A-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2895(name, align); +seqs.push_back(newSeq2895); +name = "GQY1XT001D64ZW"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2896(name, align); +seqs.push_back(newSeq2896); +name = "GQY1XT001D5YW6"; +align = "T-T--T-T--G--A-A-C-T-G-T--AG-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT---C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-T--G-G-G-G-G----------ACC-AAGGT-----T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2897(name, align); +seqs.push_back(newSeq2897); +name = "GQY1XT001D5N31"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G----G---G----CA-T-----G-G-C-C-C-C-CTG-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2898(name, align); +seqs.push_back(newSeq2898); +name = "GQY1XT001D5E9Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-GTCCGG-T-C-C-G------------ATT-GAGG--------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2899(name, align); +seqs.push_back(newSeq2899); +name = "GQY1XT001D58KF"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----G---C-----A--G----G-G-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2900(name, align); +seqs.push_back(newSeq2900); +name = "GQY1XT001D4UWX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2901(name, align); +seqs.push_back(newSeq2901); +name = "GQY1XT001D4OM4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2902(name, align); +seqs.push_back(newSeq2902); +name = "GQY1XT001D4BZG"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2903(name, align); +seqs.push_back(newSeq2903); +name = "GQY1XT001D3JIS"; +align = "G-T--T----GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-G-C-C-C--G---A----TT-G-----G-G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2904(name, align); +seqs.push_back(newSeq2904); +name = "GQY1XT001D1Q1F"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----C---C----CA-CA----G-G-G-C-T-T-C-G-G-T-G-C-C--AC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2905(name, align); +seqs.push_back(newSeq2905); +name = "GQY1XT001D1JTO"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GCGTAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2906(name, align); +seqs.push_back(newSeq2906); +name = "GQY1XT001D1DR6"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-AGG-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2907(name, align); +seqs.push_back(newSeq2907); +name = "GQY1XT001D1C1C"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2908(name, align); +seqs.push_back(newSeq2908); +name = "GQY1XT001D0Z1Y"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CT-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-T--GG-C-GG-A-ATT-C-C-G-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-C-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CA-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AAC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--AA-C-T-A-G-GT-G-T-GC-G-G-G---G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-GT--T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2909(name, align); +seqs.push_back(newSeq2909); +name = "GQY1XT001D0SOX"; +align = "A-T--C-A--G--A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-CAGG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAG"; +Sequence newSeq2910(name, align); +seqs.push_back(newSeq2910); +name = "GQY1XT001D03ZL"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-A-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-T-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G---------TATC-GA-CC-----C-C-T-T-C-T-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq2911(name, align); +seqs.push_back(newSeq2911); +name = "GQY1XT001CZL5R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2912(name, align); +seqs.push_back(newSeq2912); +name = "GQY1XT001CZHD0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2913(name, align); +seqs.push_back(newSeq2913); +name = "GQY1XT001CY8ET"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2914(name, align); +seqs.push_back(newSeq2914); +name = "GQY1XT001CXWWL"; +align = "C-G--T-T--GA-A-A-T-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2915(name, align); +seqs.push_back(newSeq2915); +name = "GQY1XT001CXEXU"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2916(name, align); +seqs.push_back(newSeq2916); +name = "GQY1XT001CX2B8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2917(name, align); +seqs.push_back(newSeq2917); +name = "GQY1XT001CWDSO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2918(name, align); +seqs.push_back(newSeq2918); +name = "GQY1XT001CW5HC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2919(name, align); +seqs.push_back(newSeq2919); +name = "GQY1XT001CVKHJ"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2920(name, align); +seqs.push_back(newSeq2920); +name = "GQY1XT001CUNPP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2921(name, align); +seqs.push_back(newSeq2921); +name = "GQY1XT001CU5SJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2922(name, align); +seqs.push_back(newSeq2922); +name = "GQY1XT001CT30S"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G---CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2923(name, align); +seqs.push_back(newSeq2923); +name = "GQY1XT001CSL5I"; +align = "C-G--T-T--GA-A-A-CTT-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-GAC-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2924(name, align); +seqs.push_back(newSeq2924); +name = "GQY1XT001CS1FN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C---T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAG-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2925(name, align); +seqs.push_back(newSeq2925); +name = "GQY1XT001CRDHR"; +align = "T-T--T-TA-GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-AA----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCT-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2926(name, align); +seqs.push_back(newSeq2926); +name = "GQY1XT001CQV4Q"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2927(name, align); +seqs.push_back(newSeq2927); +name = "GQY1XT001CQNHC"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-GTCCGG-T-G-C-G------------AAT-GAG---------C-GCT-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2928(name, align); +seqs.push_back(newSeq2928); +name = "GQY1XT001CPKJR"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2929(name, align); +seqs.push_back(newSeq2929); +name = "GQY1XT001CO1K4"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-TCC--G-G-G-G-G--G---A----AT-G-----G-C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2930(name, align); +seqs.push_back(newSeq2930); +name = "GQY1XT001CNH3Y"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq2931(name, align); +seqs.push_back(newSeq2931); +name = "GQY1XT001CMZX0"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G--T---A----TT-A-----A-G-C-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2932(name, align); +seqs.push_back(newSeq2932); +name = "GQY1XT001CMT5M"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-TCC--G-GTCCG------------ATT-GAGG--------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2933(name, align); +seqs.push_back(newSeq2933); +name = "GQY1XT001CMC8Q"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-A-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2934(name, align); +seqs.push_back(newSeq2934); +name = "GQY1XT001CMBQP"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2935(name, align); +seqs.push_back(newSeq2935); +name = "GQY1XT001CM05N"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2936(name, align); +seqs.push_back(newSeq2936); +name = "GQY1XT001CK32O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2937(name, align); +seqs.push_back(newSeq2937); +name = "GQY1XT001CINU1"; +align = "T-T--T-A--GA-A-C-C-G-G-C--AG---G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GT-TA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq2938(name, align); +seqs.push_back(newSeq2938); +name = "GQY1XT001CIC4L"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----CA-A-----G-A-A-C-C-TCC-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2939(name, align); +seqs.push_back(newSeq2939); +name = "GQY1XT001CHGBL"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CT-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-T--GG-C-GG-A-ATTCC-C-G-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-C-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CA-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--AA-C-T-A-G-GT-G-TGG--G-G-G---G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-GC--T-AA-C-G-C-A-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2940(name, align); +seqs.push_back(newSeq2940); +name = "GQY1XT001CFKR3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-T-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2941(name, align); +seqs.push_back(newSeq2941); +name = "GQY1XT001CEUY5"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-A-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2942(name, align); +seqs.push_back(newSeq2942); +name = "GQY1XT001CDLHY"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2943(name, align); +seqs.push_back(newSeq2943); +name = "GQY1XT001CDAP7"; +align = "T-C--T-T--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G---CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-C-A--C---G----AC-A-----G-T-G-C-T-T-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2944(name, align); +seqs.push_back(newSeq2944); +name = "GQY1XT001CCY5K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2945(name, align); +seqs.push_back(newSeq2945); +name = "GQY1XT001CCHZC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2946(name, align); +seqs.push_back(newSeq2946); +name = "GQY1XT001CC8Y4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ATGGTGAA"; +Sequence newSeq2947(name, align); +seqs.push_back(newSeq2947); +name = "GQY1XT001CAY17"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--C-------AT--AA------G-A-C-T-T-C-T-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq2948(name, align); +seqs.push_back(newSeq2948); +name = "GQY1XT001CA81N"; +align = "A----T-T--CA-A-A-C-T-G-C--GA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------CGT-CA--A-----G-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2949(name, align); +seqs.push_back(newSeq2949); +name = "GQY1XT001CA6LU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-GTCCGG-G-G-G-GA-----------ATG-GCC---------C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2950(name, align); +seqs.push_back(newSeq2950); +name = "GQY1XT001C9LY6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2951(name, align); +seqs.push_back(newSeq2951); +name = "GQY1XT001C8B04"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2952(name, align); +seqs.push_back(newSeq2952); +name = "GQY1XT001C89WT"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----CA-AG----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2953(name, align); +seqs.push_back(newSeq2953); +name = "GQY1XT001C7NIM"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGAATGAA"; +Sequence newSeq2954(name, align); +seqs.push_back(newSeq2954); +name = "GQY1XT001C7IR0"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-TCG--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-TGG-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2955(name, align); +seqs.push_back(newSeq2955); +name = "GQY1XT001C7572"; +align = "T-T--T-T--GA-A-A-C-T-G-A--GT-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2956(name, align); +seqs.push_back(newSeq2956); +name = "GQY1XT001C6N6K"; +align = "C-A--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C---G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq2957(name, align); +seqs.push_back(newSeq2957); +name = "GQY1XT001C5XMJ"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-CG-G-G-G-G-T--T---A----AC-G-----G-A-C-C-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2958(name, align); +seqs.push_back(newSeq2958); +name = "GQY1XT001C5XB9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-CCGGGG-G-G-A--A--------GT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2959(name, align); +seqs.push_back(newSeq2959); +name = "GQY1XT001C5C1Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2960(name, align); +seqs.push_back(newSeq2960); +name = "GQY1XT001C4RVB"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G---CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-G-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--A---CG---AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq2961(name, align); +seqs.push_back(newSeq2961); +name = "GQY1XT001C4EBJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2962(name, align); +seqs.push_back(newSeq2962); +name = "GQY1XT001C4DLZ"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2963(name, align); +seqs.push_back(newSeq2963); +name = "GQY1XT001C42O2"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2964(name, align); +seqs.push_back(newSeq2964); +name = "GQY1XT001C41Q3"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2965(name, align); +seqs.push_back(newSeq2965); +name = "GQY1XT001C3ZUM"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-T-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2966(name, align); +seqs.push_back(newSeq2966); +name = "GQY1XT001C3YP2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-A-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2967(name, align); +seqs.push_back(newSeq2967); +name = "GQY1XT001C3JSH"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-A-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CGA------GT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2968(name, align); +seqs.push_back(newSeq2968); +name = "GQY1XT001C3I5Y"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-AT-G-T-A--G-G-A-G-G--T-------ATC-GA-C----T-C-C-T-T-C-T-G-C-G-T-C--GC--A-G-T-T-AA-C-A-C-G-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2969(name, align); +seqs.push_back(newSeq2969); +name = "GQY1XT001C3C4K"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CGAAAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G---T--G-G-G-G-A--G---A----TC-A-----A-A-C-T-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2970(name, align); +seqs.push_back(newSeq2970); +name = "GQY1XT001C338B"; +align = "C-G--T-T--GA-A-A-C-T-T-G--GT-T-T-T--C-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2971(name, align); +seqs.push_back(newSeq2971); +name = "GQY1XT001C2WHZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-A-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2972(name, align); +seqs.push_back(newSeq2972); +name = "GQY1XT001C2DKZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GGG---------G-GCT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2973(name, align); +seqs.push_back(newSeq2973); +name = "GQY1XT001C1X1X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2974(name, align); +seqs.push_back(newSeq2974); +name = "GQY1XT001C1CBA"; +align = "T-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-A-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GACG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGG-G-----G-C-C-T-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2975(name, align); +seqs.push_back(newSeq2975); +name = "GQY1XT001C15GZ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2976(name, align); +seqs.push_back(newSeq2976); +name = "GQY1XT001C0WU2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2977(name, align); +seqs.push_back(newSeq2977); +name = "GQY1XT001C0MK7"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-GA-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T----C-G-G---G---------GCCG-CA-AG-----G-C-T-T-C-G-G-T-G-C-C--GG--A-G-T-T-AA-C-G-C-A-A-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq2978(name, align); +seqs.push_back(newSeq2978); +name = "GQY1XT001C0JER"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G--AA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2979(name, align); +seqs.push_back(newSeq2979); +name = "GQY1XT001BYZNI"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2980(name, align); +seqs.push_back(newSeq2980); +name = "GQY1XT001BXZY4"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2981(name, align); +seqs.push_back(newSeq2981); +name = "GQY1XT001BXRLW"; +align = "A-T--C-A--G--A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-TGG-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2982(name, align); +seqs.push_back(newSeq2982); +name = "GQY1XT001BWTCG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2983(name, align); +seqs.push_back(newSeq2983); +name = "GQY1XT001BV3MG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2984(name, align); +seqs.push_back(newSeq2984); +name = "GQY1XT001BUZ72"; +align = "G-T--T-C--AA-A-A-C-T-G-C--AG-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-A-G----------A-T-CA-AA-----C-T-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2985(name, align); +seqs.push_back(newSeq2985); +name = "GQY1XT001BUP8E"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2986(name, align); +seqs.push_back(newSeq2986); +name = "GQY1XT001BUE45"; +align = "C-G----T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-GTT-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2987(name, align); +seqs.push_back(newSeq2987); +name = "GQY1XT001BTYK2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2988(name, align); +seqs.push_back(newSeq2988); +name = "GQY1XT001BTV43"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T---C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq2989(name, align); +seqs.push_back(newSeq2989); +name = "GQY1XT001BT3JN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-AAGTG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2990(name, align); +seqs.push_back(newSeq2990); +name = "GQY1XT001BRRLA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2991(name, align); +seqs.push_back(newSeq2991); +name = "GQY1XT001BREFK"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G---T--C-G-G-A-G--G---------G-GA----A-C-C-T---T-C-G-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2992(name, align); +seqs.push_back(newSeq2992); +name = "GQY1XT001BQYLZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-GCC--G--------AA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACT-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2993(name, align); +seqs.push_back(newSeq2993); +name = "GQY1XT001BQMIR"; +align = "A-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-A-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-A-G-G-----------GG-AA--------C-C-T-T-C-G-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq2994(name, align); +seqs.push_back(newSeq2994); +name = "GQY1XT001BPY8I"; +align = "G-T--T-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AC-CT-G------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq2995(name, align); +seqs.push_back(newSeq2995); +name = "GQY1XT001BPJ6C"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-C-G-C--T-C-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq2996(name, align); +seqs.push_back(newSeq2996); +name = "GQY1XT001BPAEC"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2997(name, align); +seqs.push_back(newSeq2997); +name = "GQY1XT001BNZ2F"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2998(name, align); +seqs.push_back(newSeq2998); +name = "GQY1XT001BNSFU"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq2999(name, align); +seqs.push_back(newSeq2999); +name = "GQY1XT001BNRCL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3000(name, align); +seqs.push_back(newSeq3000); +name = "GQY1XT001BMOQL"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-A-G-G--T---A----TT-A-----A-G-C-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3001(name, align); +seqs.push_back(newSeq3001); +name = "GQY1XT001BMFOG"; +align = "T-G----T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3002(name, align); +seqs.push_back(newSeq3002); +name = "GQY1XT001BLN6A"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-G-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3003(name, align); +seqs.push_back(newSeq3003); +name = "GQY1XT001BL6MD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGA-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3004(name, align); +seqs.push_back(newSeq3004); +name = "GQY1XT001BL1GO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3005(name, align); +seqs.push_back(newSeq3005); +name = "GQY1XT001BKY75"; +align = "C-G----T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3006(name, align); +seqs.push_back(newSeq3006); +name = "GQY1XT001BJTZX"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TG-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3007(name, align); +seqs.push_back(newSeq3007); +name = "GQY1XT001BJ24E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3008(name, align); +seqs.push_back(newSeq3008); +name = "GQY1XT001BI7O5"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G--------GA-A---------T-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3009(name, align); +seqs.push_back(newSeq3009); +name = "GQY1XT001BI6VE"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3010(name, align); +seqs.push_back(newSeq3010); +name = "GQY1XT001BGT7L"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3011(name, align); +seqs.push_back(newSeq3011); +name = "GQY1XT001BGHYK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3012(name, align); +seqs.push_back(newSeq3012); +name = "GQY1XT001BG4OI"; +align = "T-C--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3013(name, align); +seqs.push_back(newSeq3013); +name = "GQY1XT001BEQ7K"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3014(name, align); +seqs.push_back(newSeq3014); +name = "GQY1XT001BEKC6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3015(name, align); +seqs.push_back(newSeq3015); +name = "GQY1XT001BCSKH"; +align = "A-T--C-G--GA-A-A-C-C---G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA-TGGCC-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TGCC-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3016(name, align); +seqs.push_back(newSeq3016); +name = "GQY1XT001BB8NC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3017(name, align); +seqs.push_back(newSeq3017); +name = "GQY1XT001B9X2U"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3018(name, align); +seqs.push_back(newSeq3018); +name = "GQY1XT001B7V18"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3019(name, align); +seqs.push_back(newSeq3019); +name = "GQY1XT001B6Z19"; +align = "C-G----T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3020(name, align); +seqs.push_back(newSeq3020); +name = "GQY1XT001B6H08"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3021(name, align); +seqs.push_back(newSeq3021); +name = "GQY1XT001B5YKG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3022(name, align); +seqs.push_back(newSeq3022); +name = "GQY1XT001B5U3V"; +align = "A-T--C-A--GA-A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G---T--G-C-G-G-G--G---A----CT-GA----C-C-C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3023(name, align); +seqs.push_back(newSeq3023); +name = "GQY1XT001B5GBB"; +align = "A-T--T-G--GG-A-A-C-T-GCC--AG-G-C-T--G-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-C-G-G--G---C----AA-A-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3024(name, align); +seqs.push_back(newSeq3024); +name = "GQY1XT001B4RK2"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-T-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq3025(name, align); +seqs.push_back(newSeq3025); +name = "GQY1XT001B4JGN"; +align = "G-T--T-T--GA-A-A-C-T-G-T--GA-G-G-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-A-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3026(name, align); +seqs.push_back(newSeq3026); +name = "GQY1XT001B46L2"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCCG-G-GCC-GA-----------ATG-GGG---------C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3027(name, align); +seqs.push_back(newSeq3027); +name = "GQY1XT001B3S4A"; +align = "C-T--T-A--GA-A-A-C-T-G-G--TA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G---T----C-G---G--G---T----TA-CC----G---------------G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3028(name, align); +seqs.push_back(newSeq3028); +name = "GQY1XT001B349K"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--G-CG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3029(name, align); +seqs.push_back(newSeq3029); +name = "GQY1XT001B24JY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3030(name, align); +seqs.push_back(newSeq3030); +name = "GQY1XT001B21UE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CGG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3031(name, align); +seqs.push_back(newSeq3031); +name = "GQY1XT001B17UZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3032(name, align); +seqs.push_back(newSeq3032); +name = "GQY1XT001B0KSM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3033(name, align); +seqs.push_back(newSeq3033); +name = "GQY1XT001AZNS8"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3034(name, align); +seqs.push_back(newSeq3034); +name = "GQY1XT001AZCFZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCTT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3035(name, align); +seqs.push_back(newSeq3035); +name = "GQY1XT001AY31C"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-TCC--G-G-G-C-C--G---A----AT-G-----G-G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3036(name, align); +seqs.push_back(newSeq3036); +name = "GQY1XT001AY2B7"; +align = "T-T--C-T--AA-A-A-C-T-G-T--AT-G-A-C--T-T-G-A-G-T-G-C-AG-TA-G-A-G-G-T-T--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T-------TCA-AG-A----A-C-C-T-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3037(name, align); +seqs.push_back(newSeq3037); +name = "GQY1XT001AX52M"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-ATGGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GTGG-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCCGGCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3038(name, align); +seqs.push_back(newSeq3038); +name = "GQY1XT001AWBPY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-TGG-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3039(name, align); +seqs.push_back(newSeq3039); +name = "GQY1XT001AW03O"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---C----AG-G-----G-G-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3040(name, align); +seqs.push_back(newSeq3040); +name = "GQY1XT001AVN7L"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3041(name, align); +seqs.push_back(newSeq3041); +name = "GQY1XT001AVKKZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3042(name, align); +seqs.push_back(newSeq3042); +name = "GQY1XT001AVARK"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3043(name, align); +seqs.push_back(newSeq3043); +name = "GQY1XT001AV8X9"; +align = "ATT--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AC-A-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3044(name, align); +seqs.push_back(newSeq3044); +name = "GQY1XT001AV3Y6"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3045(name, align); +seqs.push_back(newSeq3045); +name = "GQY1XT001AUI53"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3046(name, align); +seqs.push_back(newSeq3046); +name = "GQY1XT001AUEE4"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-C-G-C--T-C-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGGACG-GT-G-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-A--C-------GAC-AGT-----T-G-C-C-C-G-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3047(name, align); +seqs.push_back(newSeq3047); +name = "GQY1XT001AU8KX"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3048(name, align); +seqs.push_back(newSeq3048); +name = "GQY1XT001ATX0K"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-CGG-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-G-T--C---C-G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3049(name, align); +seqs.push_back(newSeq3049); +name = "GQY1XT001AT3Y2"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3050(name, align); +seqs.push_back(newSeq3050); +name = "GQY1XT001ASVQN"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3051(name, align); +seqs.push_back(newSeq3051); +name = "GQY1XT001ASD8S"; +align = "C-A--G-A--GA-A-A-C-C-G-T--AT-A-A-C--T-A-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3052(name, align); +seqs.push_back(newSeq3052); +name = "GQY1XT001AS1SB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ATT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3053(name, align); +seqs.push_back(newSeq3053); +name = "GQY1XT001AQBXP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-C--C-C-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAT-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3054(name, align); +seqs.push_back(newSeq3054); +name = "GQY1XT001APBB9"; +align = "C-C--T-T--GG-A-A-C-T-G-C--AT-G-G-C--T-G-G-A-G-T-G-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-CG-C-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATAAA"; +Sequence newSeq3055(name, align); +seqs.push_back(newSeq3055); +name = "GQY1XT001AOQAZ"; +align = "C-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3056(name, align); +seqs.push_back(newSeq3056); +name = "GQY1XT001AOF14"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-GTCCGG-T-C-C-G------------ATT-GAGG--------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3057(name, align); +seqs.push_back(newSeq3057); +name = "GQY1XT001AO7R0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGAG----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3058(name, align); +seqs.push_back(newSeq3058); +name = "GQY1XT001ANIYW"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GC-T-G-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G--T---C----GA-A-------C---C---T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3059(name, align); +seqs.push_back(newSeq3059); +name = "GQY1XT001AN6MK"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G---T--C-G-G---G--G---------A-GG----A-A-T-T-T-T-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3060(name, align); +seqs.push_back(newSeq3060); +name = "GQY1XT001ALYPN"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3061(name, align); +seqs.push_back(newSeq3061); +name = "GQY1XT001ALP7S"; +align = "C-G--T-T--GA-A-A-C-T-G-T--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3062(name, align); +seqs.push_back(newSeq3062); +name = "GQY1XT001AKD17"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3063(name, align); +seqs.push_back(newSeq3063); +name = "GQY1XT001AJTRJ"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C--C-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-GC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AAT-TA-C-T-A-G-GT-G-T-C--G-C-G-G-AG-T---C----AA-GG----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3064(name, align); +seqs.push_back(newSeq3064); +name = "GQY1XT001AJB5H"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-CCGGGG-G-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3065(name, align); +seqs.push_back(newSeq3065); +name = "GQY1XT001AIVIO"; +align = "C-C--G-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3066(name, align); +seqs.push_back(newSeq3066); +name = "GQY1XT001AI63N"; +align = "T-T--T-G--GA-A-A-C-T-G----TC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-G-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3067(name, align); +seqs.push_back(newSeq3067); +name = "GQY1XT001AHPOD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3068(name, align); +seqs.push_back(newSeq3068); +name = "GQY1XT001AHK6O"; +align = "A-T--T-T--GA-A-A-C-T-G-T---T-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3069(name, align); +seqs.push_back(newSeq3069); +name = "GQY1XT001AGTL4"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3070(name, align); +seqs.push_back(newSeq3070); +name = "GQY1XT001AGKBL"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---C----AC-A-----G-G-A-T-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3071(name, align); +seqs.push_back(newSeq3071); +name = "GQY1XT001AG68G"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AA----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3072(name, align); +seqs.push_back(newSeq3072); +name = "GQY1XT001AEPK3"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3073(name, align); +seqs.push_back(newSeq3073); +name = "GQY1XT001AE53O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3074(name, align); +seqs.push_back(newSeq3074); +name = "GQY1XT001AE0CQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--C-G-C-C-C--CGA------GT-GGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3075(name, align); +seqs.push_back(newSeq3075); +name = "GQY1XT001A8SUO"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3076(name, align); +seqs.push_back(newSeq3076); +name = "GQY1XT001A7RC7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3077(name, align); +seqs.push_back(newSeq3077); +name = "GQY1XT001A7POV"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-GTT-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3078(name, align); +seqs.push_back(newSeq3078); +name = "GQY1XT001A78ET"; +align = "T-T--T-G--GA-A-A-C-T-G-T--CC-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-TG-G-G-G-G-A--C---C----AA-G-----G-T-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3079(name, align); +seqs.push_back(newSeq3079); +name = "GQY1XT001A74MB"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-A-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-G--A-G-G-G-T--G---C----TA-A-----G-C-A-T-C-C-T-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3080(name, align); +seqs.push_back(newSeq3080); +name = "GQY1XT001A6568"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-TCC--G-G-T-G-C--G---A----AT-GA----G-C-G-C---T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3081(name, align); +seqs.push_back(newSeq3081); +name = "GQY1XT001A5I0H"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TTGG-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3082(name, align); +seqs.push_back(newSeq3082); +name = "GQY1XT001A47SX"; +align = "G-A--T-C--AA-A-A-C-T-G-C--AA-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-A-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGATTGAA"; +Sequence newSeq3083(name, align); +seqs.push_back(newSeq3083); +name = "GQY1XT001A3YSL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3084(name, align); +seqs.push_back(newSeq3084); +name = "GQY1XT001A3H9J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3085(name, align); +seqs.push_back(newSeq3085); +name = "GQY1XT001A32GR"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3086(name, align); +seqs.push_back(newSeq3086); +name = "GQY1XT001A2OIZ"; +align = "A-C--T-G--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3087(name, align); +seqs.push_back(newSeq3087); +name = "GQY1XT001A2676"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-A-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3088(name, align); +seqs.push_back(newSeq3088); +name = "GQY1XT001A21F1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3089(name, align); +seqs.push_back(newSeq3089); +name = "GQY1XT001A1MK4"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G-----------CA-GG-GC-----C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3090(name, align); +seqs.push_back(newSeq3090); +name = "GQY1XT001A1FU0"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3091(name, align); +seqs.push_back(newSeq3091); +name = "GQY1XT001A1DTO"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-C-A--G---C----AA-A-----G-C-T-G-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3092(name, align); +seqs.push_back(newSeq3092); +name = "GQY1XT001CYVBA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3093(name, align); +seqs.push_back(newSeq3093); +name = "GQY1XT001BTASU"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3094(name, align); +seqs.push_back(newSeq3094); +name = "GQY1XT001AIUY1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3095(name, align); +seqs.push_back(newSeq3095); +name = "GQY1XT001C1WR1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3096(name, align); +seqs.push_back(newSeq3096); +name = "GQY1XT001BYWY5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3097(name, align); +seqs.push_back(newSeq3097); +name = "GQY1XT001EJP5K"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G---T--------C-G--G-----------------G-C-A-A-C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3098(name, align); +seqs.push_back(newSeq3098); +name = "GQY1XT001DZDID"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3099(name, align); +seqs.push_back(newSeq3099); +name = "GQY1XT001DB2M7"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3100(name, align); +seqs.push_back(newSeq3100); +name = "GQY1XT001C121L"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---G----CA-A-----G---A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq3101(name, align); +seqs.push_back(newSeq3101); +name = "GQY1XT001A9V6K"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3102(name, align); +seqs.push_back(newSeq3102); +name = "GQY1XT001A5KO8"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CA-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3103(name, align); +seqs.push_back(newSeq3103); +name = "GQY1XT001DZFNC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3104(name, align); +seqs.push_back(newSeq3104); +name = "GQY1XT001DMOMH"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3105(name, align); +seqs.push_back(newSeq3105); +name = "GQY1XT001DJWET"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3106(name, align); +seqs.push_back(newSeq3106); +name = "GQY1XT001CTRXH"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3107(name, align); +seqs.push_back(newSeq3107); +name = "GQY1XT001CPZP8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3108(name, align); +seqs.push_back(newSeq3108); +name = "GQY1XT001CGFIZ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3109(name, align); +seqs.push_back(newSeq3109); +name = "GQY1XT001C9IAF"; +align = "ATT--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CG-G-G-G-G----T---T----TA-CG----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3110(name, align); +seqs.push_back(newSeq3110); +name = "GQY1XT001BZ0KL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3111(name, align); +seqs.push_back(newSeq3111); +name = "GQY1XT001BKB10"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3112(name, align); +seqs.push_back(newSeq3112); +name = "GQY1XT001B5THT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3113(name, align); +seqs.push_back(newSeq3113); +name = "GQY1XT001B3WU9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-G-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3114(name, align); +seqs.push_back(newSeq3114); +name = "GQY1XT001AFW4W"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3115(name, align); +seqs.push_back(newSeq3115); +name = "GQY1XT001A355Y"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3116(name, align); +seqs.push_back(newSeq3116); +name = "GQY1XT001A1RVC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3117(name, align); +seqs.push_back(newSeq3117); +name = "GQY1XT001EZH20"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3118(name, align); +seqs.push_back(newSeq3118); +name = "GQY1XT001EYY1K"; +align = "T-T--T-G--GA-A-A-C-T-G-A--GC-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--AA-C-T-A-A-GT-G-T-T------G-G-A--G-----------A-----G-----A-T-T-C-A-G-T-G-C-T--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TTC-TCC-GCC-T-G-GGG-AG-TA--TG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq3119(name, align); +seqs.push_back(newSeq3119); +name = "GQY1XT001EXR5S"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3120(name, align); +seqs.push_back(newSeq3120); +name = "GQY1XT001EXG9I"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3121(name, align); +seqs.push_back(newSeq3121); +name = "GQY1XT001EX3OQ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-T-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3122(name, align); +seqs.push_back(newSeq3122); +name = "GQY1XT001EWOFQ"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3123(name, align); +seqs.push_back(newSeq3123); +name = "GQY1XT001EVIXR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3124(name, align); +seqs.push_back(newSeq3124); +name = "GQY1XT001EVIL3"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G----------T-TCGA-T----G-C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3125(name, align); +seqs.push_back(newSeq3125); +name = "GQY1XT001EV5Z1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TA-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3126(name, align); +seqs.push_back(newSeq3126); +name = "GQY1XT001EUB8F"; +align = "A-T--T-C--AA-A-A-C-T-G-T--AT-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-T-T-C-T-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3127(name, align); +seqs.push_back(newSeq3127); +name = "GQY1XT001EU98R"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-T-GGAA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--G--------AA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TG--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3128(name, align); +seqs.push_back(newSeq3128); +name = "GQY1XT001ES883"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3129(name, align); +seqs.push_back(newSeq3129); +name = "GQY1XT001ES4H3"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3130(name, align); +seqs.push_back(newSeq3130); +name = "GQY1XT001ERRVZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGATGAA"; +Sequence newSeq3131(name, align); +seqs.push_back(newSeq3131); +name = "GQY1XT001ER7KJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3132(name, align); +seqs.push_back(newSeq3132); +name = "GQY1XT001EQUF9"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATC-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CTCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3133(name, align); +seqs.push_back(newSeq3133); +name = "GQY1XT001EQKSR"; +align = "T-T--T-A--GA-A-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G---T----C-G---G--G---T----TA-CC----G---------------G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3134(name, align); +seqs.push_back(newSeq3134); +name = "GQY1XT001EQ4T5"; +align = "T-T--T-T--GA-A-A-C-T-G-T--TG-A-A-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-A--G---C----A--AG----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3135(name, align); +seqs.push_back(newSeq3135); +name = "GQY1XT001EQ0GM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3136(name, align); +seqs.push_back(newSeq3136); +name = "GQY1XT001EP3RW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-C-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3137(name, align); +seqs.push_back(newSeq3137); +name = "GQY1XT001EOJ97"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G---------TTTC-GA-TG-----C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3138(name, align); +seqs.push_back(newSeq3138); +name = "GQY1XT001EOBZ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T----G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3139(name, align); +seqs.push_back(newSeq3139); +name = "GQY1XT001ENE25"; +align = "C-G--T-T--GA-A-A-C-TGG-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3140(name, align); +seqs.push_back(newSeq3140); +name = "GQY1XT001EMLHZ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TA-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3141(name, align); +seqs.push_back(newSeq3141); +name = "GQY1XT001EMBCT"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-CAA-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3142(name, align); +seqs.push_back(newSeq3142); +name = "GQY1XT001ELGIG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AA-A-----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3143(name, align); +seqs.push_back(newSeq3143); +name = "GQY1XT001ELA3R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3144(name, align); +seqs.push_back(newSeq3144); +name = "GQY1XT001EKNJB"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-TGG-CGGG-G--ATC-A-AA-CA-GG-ATTAGACTA-CCCT-GGTA-GT-C-CG-C-ACAAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CTGG-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3145(name, align); +seqs.push_back(newSeq3145); +name = "GQY1XT001EK7F9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T--------T-T-G--C-------GA--TAT-----A-C-A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3146(name, align); +seqs.push_back(newSeq3146); +name = "GQY1XT001EIC6B"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3147(name, align); +seqs.push_back(newSeq3147); +name = "GQY1XT001EI5XA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-GAA-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3148(name, align); +seqs.push_back(newSeq3148); +name = "GQY1XT001EHJ1A"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3149(name, align); +seqs.push_back(newSeq3149); +name = "GQY1XT001EGMQR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3150(name, align); +seqs.push_back(newSeq3150); +name = "GQY1XT001EG00X"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3151(name, align); +seqs.push_back(newSeq3151); +name = "GQY1XT001EFJCS"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--CG---AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3152(name, align); +seqs.push_back(newSeq3152); +name = "GQY1XT001EDJOE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3153(name, align); +seqs.push_back(newSeq3153); +name = "GQY1XT001ED0X4"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3154(name, align); +seqs.push_back(newSeq3154); +name = "GQY1XT001ED0VN"; +align = "A-T--C-A--GA-A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3155(name, align); +seqs.push_back(newSeq3155); +name = "GQY1XT001ECIAV"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3156(name, align); +seqs.push_back(newSeq3156); +name = "GQY1XT001EC4HB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3157(name, align); +seqs.push_back(newSeq3157); +name = "GQY1XT001EC08C"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T----G-G-G-G-A--G---A----TC-A-----A-A-C-T-T-T-C-C-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3158(name, align); +seqs.push_back(newSeq3158); +name = "GQY1XT001EBT8D"; +align = "A-A--C-C--AA-A-A-C-T-A-T--TA-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-A--T-------GAA-TA------A-T-C-T-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3159(name, align); +seqs.push_back(newSeq3159); +name = "GQY1XT001EBJ1Q"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-TG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq3160(name, align); +seqs.push_back(newSeq3160); +name = "GQY1XT001EAYKP"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-ATCG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGATGAA"; +Sequence newSeq3161(name, align); +seqs.push_back(newSeq3161); +name = "GQY1XT001EA3K9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3162(name, align); +seqs.push_back(newSeq3162); +name = "GQY1XT001E1XHD"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--G-------AGG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-GTTAT-TCC-ACCGT-G-GGG-AG-TA-CGG-CC-G-G-C-A-ACGGTAGA"; +Sequence newSeq3163(name, align); +seqs.push_back(newSeq3163); +name = "GQY1XT001DZXAF"; +align = "T-C--T-G--GG-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT---C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3164(name, align); +seqs.push_back(newSeq3164); +name = "GQY1XT001DZPZR"; +align = "G-T--T-T--GA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-GAG-G-T----------ATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3165(name, align); +seqs.push_back(newSeq3165); +name = "GQY1XT001DZMBP"; +align = "A-G--T-T--GA-A-A-C-TAG-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-AGG-GTT-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3166(name, align); +seqs.push_back(newSeq3166); +name = "GQY1XT001DZGO2"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3167(name, align); +seqs.push_back(newSeq3167); +name = "GQY1XT001DYWDT"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-AA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3168(name, align); +seqs.push_back(newSeq3168); +name = "GQY1XT001DY46X"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3169(name, align); +seqs.push_back(newSeq3169); +name = "GQY1XT001DXEQX"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TT-A-A-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3170(name, align); +seqs.push_back(newSeq3170); +name = "GQY1XT001DXDO1"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C---G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3171(name, align); +seqs.push_back(newSeq3171); +name = "GQY1XT001DX5H7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3172(name, align); +seqs.push_back(newSeq3172); +name = "GQY1XT001DWFVW"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3173(name, align); +seqs.push_back(newSeq3173); +name = "GQY1XT001DWEPH"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G--------GA-AT------G-G-C-C-C-T-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3174(name, align); +seqs.push_back(newSeq3174); +name = "GQY1XT001DV49J"; +align = "G-A--T-C--GA-A-A-C-T-G-T--TC-A-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AA--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq3175(name, align); +seqs.push_back(newSeq3175); +name = "GQY1XT001DU0CH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-T-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3176(name, align); +seqs.push_back(newSeq3176); +name = "GQY1XT001DT67S"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3177(name, align); +seqs.push_back(newSeq3177); +name = "GQY1XT001DSZ1E"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GATA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3178(name, align); +seqs.push_back(newSeq3178); +name = "GQY1XT001DSJH6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA-TCC-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3179(name, align); +seqs.push_back(newSeq3179); +name = "GQY1XT001DSI9W"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-T-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ATGGTGAA"; +Sequence newSeq3180(name, align); +seqs.push_back(newSeq3180); +name = "GQY1XT001DS53E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3181(name, align); +seqs.push_back(newSeq3181); +name = "GQY1XT001DRXCI"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G----G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3182(name, align); +seqs.push_back(newSeq3182); +name = "GQY1XT001DRTF9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3183(name, align); +seqs.push_back(newSeq3183); +name = "GQY1XT001DR67U"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-AG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3184(name, align); +seqs.push_back(newSeq3184); +name = "GQY1XT001DQSZV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3185(name, align); +seqs.push_back(newSeq3185); +name = "GQY1XT001DQKPP"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3186(name, align); +seqs.push_back(newSeq3186); +name = "GQY1XT001DQIAS"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--G-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3187(name, align); +seqs.push_back(newSeq3187); +name = "GQY1XT001DQ59I"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3188(name, align); +seqs.push_back(newSeq3188); +name = "GQY1XT001DNKWG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CGA------GT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3189(name, align); +seqs.push_back(newSeq3189); +name = "GQY1XT001DNEQK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3190(name, align); +seqs.push_back(newSeq3190); +name = "GQY1XT001DN8J2"; +align = "C-G--T-T--GA-A-A-C-TAG-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-TCCC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-TGG--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3191(name, align); +seqs.push_back(newSeq3191); +name = "GQY1XT001DM9WG"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-G-G-A-G-T-A-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C---ATG-G-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3192(name, align); +seqs.push_back(newSeq3192); +name = "GQY1XT001DLFTW"; +align = "C-T--T-A--GA-A-C-T-G-G-T--AG---G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AATA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GT-TA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3193(name, align); +seqs.push_back(newSeq3193); +name = "GQY1XT001DL09H"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3194(name, align); +seqs.push_back(newSeq3194); +name = "GQY1XT001DJPDU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-A-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3195(name, align); +seqs.push_back(newSeq3195); +name = "GQY1XT001DJOS0"; +align = "C-T--T-G--CG-A-A-C-T-G-T--CA-G-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-G-C--C--------AA-GG------C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3196(name, align); +seqs.push_back(newSeq3196); +name = "GQY1XT001DJ04A"; +align = "C-G--T-T--GA-A-A-C-TGG-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3197(name, align); +seqs.push_back(newSeq3197); +name = "GQY1XT001DHTSP"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3198(name, align); +seqs.push_back(newSeq3198); +name = "GQY1XT001DH4UX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3199(name, align); +seqs.push_back(newSeq3199); +name = "GQY1XT001DGQL7"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T----C-----G-G--G-------CA----A-----C-C-G-G-T---G-C-T---G----A---A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3200(name, align); +seqs.push_back(newSeq3200); +name = "GQY1XT001DEW4M"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3201(name, align); +seqs.push_back(newSeq3201); +name = "GQY1XT001DEKWE"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T--------T-T-G--C-------GAT-ATA-------C-A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3202(name, align); +seqs.push_back(newSeq3202); +name = "GQY1XT001DD84B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3203(name, align); +seqs.push_back(newSeq3203); +name = "GQY1XT001DCQ93"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3204(name, align); +seqs.push_back(newSeq3204); +name = "GQY1XT001DC0OE"; +align = "A-T--T-G-GAA-A-A-C-T-G-T--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3205(name, align); +seqs.push_back(newSeq3205); +name = "GQY1XT001DBXXE"; +align = "C-G--T-T--GA-A-A-C-T-G-C-CGG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C---G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-GCC--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3206(name, align); +seqs.push_back(newSeq3206); +name = "GQY1XT001DAO2N"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3207(name, align); +seqs.push_back(newSeq3207); +name = "GQY1XT001DAG5U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3208(name, align); +seqs.push_back(newSeq3208); +name = "GQY1XT001D9XLV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3209(name, align); +seqs.push_back(newSeq3209); +name = "GQY1XT001D8BJE"; +align = "A-G----T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AGA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAA-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3210(name, align); +seqs.push_back(newSeq3210); +name = "GQY1XT001D89JO"; +align = "A-A--C-T--AA-A-A-C-T-A-A--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-T-G--T-------GAT-GA------A-C-G-C-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-TGG-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3211(name, align); +seqs.push_back(newSeq3211); +name = "GQY1XT001D6KIF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--C-G-C-C-C--C-------GAGTGGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3212(name, align); +seqs.push_back(newSeq3212); +name = "GQY1XT001D5NKF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3213(name, align); +seqs.push_back(newSeq3213); +name = "GQY1XT001D4LHV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3214(name, align); +seqs.push_back(newSeq3214); +name = "GQY1XT001D2F94"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3215(name, align); +seqs.push_back(newSeq3215); +name = "GQY1XT001D1U5E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3216(name, align); +seqs.push_back(newSeq3216); +name = "GQY1XT001D1B3E"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GGA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-C-G-G--G---C----AG-G-----G-C-C-C-G-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-G-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3217(name, align); +seqs.push_back(newSeq3217); +name = "GQY1XT001CYCXN"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3218(name, align); +seqs.push_back(newSeq3218); +name = "GQY1XT001CXQF6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3219(name, align); +seqs.push_back(newSeq3219); +name = "GQY1XT001CXBCO"; +align = "T-T--TGG--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3220(name, align); +seqs.push_back(newSeq3220); +name = "GQY1XT001CVM86"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--TG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3221(name, align); +seqs.push_back(newSeq3221); +name = "GQY1XT001CU7DV"; +align = "G-T--T-T--GA-A-A-C-T-G-T--TC-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-GCT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-TGG--G-G-G-G-G----------TCT-GACC------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA-CGG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3222(name, align); +seqs.push_back(newSeq3222); +name = "GQY1XT001CU69Y"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3223(name, align); +seqs.push_back(newSeq3223); +name = "GQY1XT001CTE6X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3224(name, align); +seqs.push_back(newSeq3224); +name = "GQY1XT001CSQSO"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3225(name, align); +seqs.push_back(newSeq3225); +name = "GQY1XT001CSNC3"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3226(name, align); +seqs.push_back(newSeq3226); +name = "GQY1XT001CSIJ8"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3227(name, align); +seqs.push_back(newSeq3227); +name = "GQY1XT001CQ8Q3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3228(name, align); +seqs.push_back(newSeq3228); +name = "GQY1XT001CPHL7"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G---A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CTGG-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3229(name, align); +seqs.push_back(newSeq3229); +name = "GQY1XT001CP7MB"; +align = "A-GT-T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-CTTT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3230(name, align); +seqs.push_back(newSeq3230); +name = "GQY1XT001CNOAV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3231(name, align); +seqs.push_back(newSeq3231); +name = "GQY1XT001CN6GC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3232(name, align); +seqs.push_back(newSeq3232); +name = "GQY1XT001CN0IU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-G-G-G-A-G--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G---------------GT--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3233(name, align); +seqs.push_back(newSeq3233); +name = "GQY1XT001CMNKQ"; +align = "C-G--T-T--GA-A-A-CTT-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3234(name, align); +seqs.push_back(newSeq3234); +name = "GQY1XT001CM77U"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq3235(name, align); +seqs.push_back(newSeq3235); +name = "GQY1XT001CLSTW"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3236(name, align); +seqs.push_back(newSeq3236); +name = "GQY1XT001CLFS0"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G-------CAT-GGC-----C-C-C-C-T---G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3237(name, align); +seqs.push_back(newSeq3237); +name = "GQY1XT001CL10B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3238(name, align); +seqs.push_back(newSeq3238); +name = "GQY1XT001CJSM2"; +align = "A-T--T-G--GG-A-A-C-T-G-G--CG-C-G-C--T-G-G-A-G-T-G-C-CG-GA---G-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-G-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-C-C--C---C----AT-T-----G-G-G-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3239(name, align); +seqs.push_back(newSeq3239); +name = "GQY1XT001CJO9T"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3240(name, align); +seqs.push_back(newSeq3240); +name = "GQY1XT001CJEIW"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3241(name, align); +seqs.push_back(newSeq3241); +name = "GQY1XT001CJE27"; +align = "T-T--T-T--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-G-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3242(name, align); +seqs.push_back(newSeq3242); +name = "GQY1XT001CIZFZ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T---G-CA-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3243(name, align); +seqs.push_back(newSeq3243); +name = "GQY1XT001CIIDQ"; +align = "G-T--T-C--AA-A-A-C-T-T-C--TT-G-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AGA-T--A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3244(name, align); +seqs.push_back(newSeq3244); +name = "GQY1XT001CHSKR"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGG-G-G-G--G-------GAGTTGA-----C-C-C-C-T-G-G-G-TGG-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3245(name, align); +seqs.push_back(newSeq3245); +name = "GQY1XT001CHNIE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3246(name, align); +seqs.push_back(newSeq3246); +name = "GQY1XT001CHA5C"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3247(name, align); +seqs.push_back(newSeq3247); +name = "GQY1XT001CH931"; +align = "A-A--C-C--AA-A-A-C-T-A-T--TA-T-T-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C--------GC-AA------G-A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq3248(name, align); +seqs.push_back(newSeq3248); +name = "GQY1XT001CG1BN"; +align = "A-GT-T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3249(name, align); +seqs.push_back(newSeq3249); +name = "GQY1XT001CFXK7"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-GCGGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3250(name, align); +seqs.push_back(newSeq3250); +name = "GQY1XT001CFFM5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-AT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3251(name, align); +seqs.push_back(newSeq3251); +name = "GQY1XT001CDZBY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3252(name, align); +seqs.push_back(newSeq3252); +name = "GQY1XT001CDT8V"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-AAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3253(name, align); +seqs.push_back(newSeq3253); +name = "GQY1XT001CDROF"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3254(name, align); +seqs.push_back(newSeq3254); +name = "GQY1XT001CAS6O"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3255(name, align); +seqs.push_back(newSeq3255); +name = "GQY1XT001C7BVW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CA-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3256(name, align); +seqs.push_back(newSeq3256); +name = "GQY1XT001C6ZWZ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3257(name, align); +seqs.push_back(newSeq3257); +name = "GQY1XT001C6FPS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3258(name, align); +seqs.push_back(newSeq3258); +name = "GQY1XT001C5LCN"; +align = "T-T--T-T--GA-A-A-C-T-G-T--AC-A-G-C--T-T-G-A-T-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C------G-G-C------G----AT-AA------A-A-T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3259(name, align); +seqs.push_back(newSeq3259); +name = "GQY1XT001C2O06"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-GTGGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3260(name, align); +seqs.push_back(newSeq3260); +name = "GQY1XT001C2EJB"; +align = "C-GT-T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G---T--C-G-G-G-G--G-------GCA-TGG-----C-C-C-C-T-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3261(name, align); +seqs.push_back(newSeq3261); +name = "GQY1XT001C264J"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3262(name, align); +seqs.push_back(newSeq3262); +name = "GQY1XT001C18TC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3263(name, align); +seqs.push_back(newSeq3263); +name = "GQY1XT001C0KVO"; +align = "A-T--T-T--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GGA-GG-CGG-C-TT-G--CTGG-AC-GG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-C-A-G-GT-G-T-C--G-G-G-G-G--A---C---ATA-A-----G-T-T-T-C-C-C-G-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-C-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3264(name, align); +seqs.push_back(newSeq3264); +name = "GQY1XT001BZQO1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GAC--CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3265(name, align); +seqs.push_back(newSeq3265); +name = "GQY1XT001BYZTU"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G--AA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3266(name, align); +seqs.push_back(newSeq3266); +name = "GQY1XT001BYB00"; +align = "C-G--T-T--GA-A-A-C-T---G--AT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-T-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3267(name, align); +seqs.push_back(newSeq3267); +name = "GQY1XT001BXW2F"; +align = "A-C--T-C--AA-A-A-C-T-G-C--AG-C-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3268(name, align); +seqs.push_back(newSeq3268); +name = "GQY1XT001BXRFA"; +align = "C-C--T-G--CG-A-A-C-T-G-G--GA-T-G-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G--------CA-AA------G-C-T-TCT-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3269(name, align); +seqs.push_back(newSeq3269); +name = "GQY1XT001BXOLD"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3270(name, align); +seqs.push_back(newSeq3270); +name = "GQY1XT001BX8O3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGG-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3271(name, align); +seqs.push_back(newSeq3271); +name = "GQY1XT001BVDRX"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACTGGA-CC-----C-C-C-T-GCC-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3272(name, align); +seqs.push_back(newSeq3272); +name = "GQY1XT001BUZKF"; +align = "..T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GTGG-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3273(name, align); +seqs.push_back(newSeq3273); +name = "GQY1XT001BUM3E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG---T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3274(name, align); +seqs.push_back(newSeq3274); +name = "GQY1XT001BUEU9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C--------GA-GT------G-A-ACGCT-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3275(name, align); +seqs.push_back(newSeq3275); +name = "GQY1XT001BTTQZ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3276(name, align); +seqs.push_back(newSeq3276); +name = "GQY1XT001BSELK"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-G-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3277(name, align); +seqs.push_back(newSeq3277); +name = "GQY1XT001BP88E"; +align = "T-T--T-A--GA-A-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-TCCCT-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GT-TA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3278(name, align); +seqs.push_back(newSeq3278); +name = "GQY1XT001BOGRP"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3279(name, align); +seqs.push_back(newSeq3279); +name = "GQY1XT001BODNA"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G---G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3280(name, align); +seqs.push_back(newSeq3280); +name = "GQY1XT001BO2G3"; +align = "A-T--T-G--GA-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-T-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-A-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T-C----G---G-G--G---C----A--A---------------C-C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3281(name, align); +seqs.push_back(newSeq3281); +name = "GQY1XT001BNPUM"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-A-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-AG--G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TTG---CTGG-AC-AG-TA--ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3282(name, align); +seqs.push_back(newSeq3282); +name = "GQY1XT001BNDMF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3283(name, align); +seqs.push_back(newSeq3283); +name = "GQY1XT001BMLA9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3284(name, align); +seqs.push_back(newSeq3284); +name = "GQY1XT001BL467"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-GAG-G-T--A---T----TG-A-----C-C-C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3285(name, align); +seqs.push_back(newSeq3285); +name = "GQY1XT001BIJ28"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3286(name, align); +seqs.push_back(newSeq3286); +name = "GQY1XT001BH0W9"; +align = "T-T--T-A--GA-A-A-C-T-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G---T--C-----G-G----------G---T-------T-A-C-C---G---G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3287(name, align); +seqs.push_back(newSeq3287); +name = "GQY1XT001BG8LX"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A---GGT-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G---G--G---C----AA-A-----G-C-C-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3288(name, align); +seqs.push_back(newSeq3288); +name = "GQY1XT001BFVJG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3289(name, align); +seqs.push_back(newSeq3289); +name = "GQY1XT001BF6FK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-A-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-T--A---C----AA-A-----G-T-A-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3290(name, align); +seqs.push_back(newSeq3290); +name = "GQY1XT001BF379"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3291(name, align); +seqs.push_back(newSeq3291); +name = "GQY1XT001BF0W9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3292(name, align); +seqs.push_back(newSeq3292); +name = "GQY1XT001BE5OV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G---A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3293(name, align); +seqs.push_back(newSeq3293); +name = "GQY1XT001BDOH5"; +align = "A-G--T-T--GA-A-A-C-T---G--GC-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-T--GG-C-GG-A-ATT-C-C-G-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-C-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CA-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--AA-C-T-A-G-GT-G-TGG--G-G-G---G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-GC--T-AA-C-G-C-A-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3294(name, align); +seqs.push_back(newSeq3294); +name = "GQY1XT001BDM6L"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3295(name, align); +seqs.push_back(newSeq3295); +name = "GQY1XT001BDKWF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C--------GA-GGT-----G-AGGGG-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3296(name, align); +seqs.push_back(newSeq3296); +name = "GQY1XT001BDBAF"; +align = "G-T--T-T--GA-A-A-C-T-G-T---T-C-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-C------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA-CGG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3297(name, align); +seqs.push_back(newSeq3297); +name = "GQY1XT001BCRMC"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GTGG-T-C--G-G-G-G-T--T---A----AAGA-----A-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3298(name, align); +seqs.push_back(newSeq3298); +name = "GQY1XT001BC48B"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3299(name, align); +seqs.push_back(newSeq3299); +name = "GQY1XT001BBV5E"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C----T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-A-C-A-AGACTGAA"; +Sequence newSeq3300(name, align); +seqs.push_back(newSeq3300); +name = "GQY1XT001BBP29"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3301(name, align); +seqs.push_back(newSeq3301); +name = "GQY1XT001B9AWM"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCC--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3302(name, align); +seqs.push_back(newSeq3302); +name = "GQY1XT001B95M3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3303(name, align); +seqs.push_back(newSeq3303); +name = "GQY1XT001B8L7K"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-T-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3304(name, align); +seqs.push_back(newSeq3304); +name = "GQY1XT001B87PN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3305(name, align); +seqs.push_back(newSeq3305); +name = "GQY1XT001B6LMA"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3306(name, align); +seqs.push_back(newSeq3306); +name = "GQY1XT001B5F3H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-GAAA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3307(name, align); +seqs.push_back(newSeq3307); +name = "GQY1XT001B41CK"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3308(name, align); +seqs.push_back(newSeq3308); +name = "GQY1XT001B2Q3R"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3309(name, align); +seqs.push_back(newSeq3309); +name = "GQY1XT001B13GD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3310(name, align); +seqs.push_back(newSeq3310); +name = "GQY1XT001B11M6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G---T--C-C-G-G-T--T-------CTA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3311(name, align); +seqs.push_back(newSeq3311); +name = "GQY1XT001B0XU3"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq3312(name, align); +seqs.push_back(newSeq3312); +name = "GQY1XT001B0XQQ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3313(name, align); +seqs.push_back(newSeq3313); +name = "GQY1XT001B0NAD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3314(name, align); +seqs.push_back(newSeq3314); +name = "GQY1XT001AZSAC"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T---G-GC-GA-G---A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-A--C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3315(name, align); +seqs.push_back(newSeq3315); +name = "GQY1XT001AZRUS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-TC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-G-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3316(name, align); +seqs.push_back(newSeq3316); +name = "GQY1XT001AZ6ZX"; +align = "A-T--C-A--GA-A-A-C-T-G----TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT---C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3317(name, align); +seqs.push_back(newSeq3317); +name = "GQY1XT001AYG0R"; +align = "C-T--A-T---A-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T-C--G-G---G----------------CA----------A---C-C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3318(name, align); +seqs.push_back(newSeq3318); +name = "GQY1XT001AW9SX"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-TA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3319(name, align); +seqs.push_back(newSeq3319); +name = "GQY1XT001AVT16"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-C-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-CT-G--CTGG-AC-AT-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-A-G-G---------TATT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3320(name, align); +seqs.push_back(newSeq3320); +name = "GQY1XT001AVK8L"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3321(name, align); +seqs.push_back(newSeq3321); +name = "GQY1XT001AVIFA"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3322(name, align); +seqs.push_back(newSeq3322); +name = "GQY1XT001AVF4E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3323(name, align); +seqs.push_back(newSeq3323); +name = "GQY1XT001AUQ1O"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3324(name, align); +seqs.push_back(newSeq3324); +name = "GQY1XT001ATR8J"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T------C-G-G-G-----------C---A--------A-C-----C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3325(name, align); +seqs.push_back(newSeq3325); +name = "GQY1XT001ATMMQ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3326(name, align); +seqs.push_back(newSeq3326); +name = "GQY1XT001ARSOG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3327(name, align); +seqs.push_back(newSeq3327); +name = "GQY1XT001AQU2W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-GC-C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3328(name, align); +seqs.push_back(newSeq3328); +name = "GQY1XT001APHH0"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-T-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-T-TAA-A-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3329(name, align); +seqs.push_back(newSeq3329); +name = "GQY1XT001AOMXQ"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3330(name, align); +seqs.push_back(newSeq3330); +name = "GQY1XT001ANUUY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3331(name, align); +seqs.push_back(newSeq3331); +name = "GQY1XT001AMYAV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCAG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3332(name, align); +seqs.push_back(newSeq3332); +name = "GQY1XT001AKR8Q"; +align = "T-C--T-T--GG-A-A-C-T-G-C--GC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-G-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AG-A-----GAC-T-G-C-C-C-G-G-T-G-C-C--GC--A-G-T-C-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq3333(name, align); +seqs.push_back(newSeq3333); +name = "GQY1XT001AKPS7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-G-T--C-C-G---G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3334(name, align); +seqs.push_back(newSeq3334); +name = "GQY1XT001AK6UN"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T----G-G---G--G---------T--C----G-A-A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3335(name, align); +seqs.push_back(newSeq3335); +name = "GQY1XT001AJDFY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-T-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3336(name, align); +seqs.push_back(newSeq3336); +name = "GQY1XT001AIJTW"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3337(name, align); +seqs.push_back(newSeq3337); +name = "GQY1XT001AGXYX"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--C---G----CA-A-----G---A-C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq3338(name, align); +seqs.push_back(newSeq3338); +name = "GQY1XT001AGWWC"; +align = "G-T--C-C--CG-A-A-C-T-G-GC-GT-G-T-C--T-C-G-A-G-T-T-C-GG-TA-G-G-G-G-A-G--AT-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-A-TC-T--CTGG-GC-CG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-T-G--G-G-GAG-G-----------AT-AG-C------C-T-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq3339(name, align); +seqs.push_back(newSeq3339); +name = "GQY1XT001AGT98"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AT--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3340(name, align); +seqs.push_back(newSeq3340); +name = "GQY1XT001AEGXE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------GT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3341(name, align); +seqs.push_back(newSeq3341); +name = "GQY1XT001A7WSM"; +align = "A-T--A-T--AA-A-A-C-T-GTT--TT-A-A-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-TG-AGA-G-C-A-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CTG-T-AAAC-G-A-TG-GG--TA-C-T-A-G-GT-G-T-G--G-G-T-T-G--T-------GAA-TA------A-C-A-A-T-T-C-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAC-CCC-GCC-T-G-AGG-AG-TA--CG-AT-C-G-C-A-AGATTAAA"; +Sequence newSeq3342(name, align); +seqs.push_back(newSeq3342); +name = "GQY1XT001A6AS9"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C----T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3343(name, align); +seqs.push_back(newSeq3343); +name = "GQY1XT001A5P2L"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-GC-C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3344(name, align); +seqs.push_back(newSeq3344); +name = "GQY1XT001A5IPZ"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T-C--G-G-----G------------C----AA-----C-------C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3345(name, align); +seqs.push_back(newSeq3345); +name = "GQY1XT001A448J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-G-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA-CGG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3346(name, align); +seqs.push_back(newSeq3346); +name = "GQY1XT001A3EAP"; +align = "C-G----T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3347(name, align); +seqs.push_back(newSeq3347); +name = "GQY1XT001A242T"; +align = "C-G--T-T--GA-A-A-C-T-G-A--C--G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3348(name, align); +seqs.push_back(newSeq3348); +name = "GQY1XT001DO01W"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3349(name, align); +seqs.push_back(newSeq3349); +name = "GQY1XT001CHVTH"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3350(name, align); +seqs.push_back(newSeq3350); +name = "GQY1XT001EFYPL"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-T-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-A-C--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-A-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-CC-TG-T-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--AA-C-T-A-A-GT-G-T-T--G-G-A---------------GA-GA------------T-T-C-A-G-T-G-C-T--GC--A-G-T-T-AA-C-G-C-A-A-TAA-G-TTC-TCC-GCC-T-G-GGG-AG-TA--TG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq3351(name, align); +seqs.push_back(newSeq3351); +name = "GQY1XT001C3TV9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3352(name, align); +seqs.push_back(newSeq3352); +name = "GQY1XT001ELUU5"; +align = "T-A--C-C--AA-A-A-C-T-G-T--TG-G-A-C--T-T-G-A-G-T-G-C-AG-GA---G-G-G-C-A--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-G--T-------ATC-GA-C----T-C-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3353(name, align); +seqs.push_back(newSeq3353); +name = "GQY1XT001DQ2GQ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3354(name, align); +seqs.push_back(newSeq3354); +name = "GQY1XT001DLHWX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3355(name, align); +seqs.push_back(newSeq3355); +name = "GQY1XT001CPFM8"; +align = "A----T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-T-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3356(name, align); +seqs.push_back(newSeq3356); +name = "GQY1XT001CIQK9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CGG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3357(name, align); +seqs.push_back(newSeq3357); +name = "GQY1XT001EVTKL"; +align = "T-T--T-G-GAA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3358(name, align); +seqs.push_back(newSeq3358); +name = "GQY1XT001EJC9R"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3359(name, align); +seqs.push_back(newSeq3359); +name = "GQY1XT001EHN8D"; +align = "A-T--C-A--G--A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3360(name, align); +seqs.push_back(newSeq3360); +name = "GQY1XT001E0EBK"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T---G----TC-A-----T-G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq3361(name, align); +seqs.push_back(newSeq3361); +name = "GQY1XT001DP3XG"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAA-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3362(name, align); +seqs.push_back(newSeq3362); +name = "GQY1XT001DCXDJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3363(name, align); +seqs.push_back(newSeq3363); +name = "GQY1XT001D72B0"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T----C---G-G-G------------T-TA----------C-C---G---G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3364(name, align); +seqs.push_back(newSeq3364); +name = "GQY1XT001CZJ7Y"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3365(name, align); +seqs.push_back(newSeq3365); +name = "GQY1XT001CUFSX"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--C-------GAA-TGA-----G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3366(name, align); +seqs.push_back(newSeq3366); +name = "GQY1XT001CU9JC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3367(name, align); +seqs.push_back(newSeq3367); +name = "GQY1XT001CP1A6"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3368(name, align); +seqs.push_back(newSeq3368); +name = "GQY1XT001CDUN9"; +align = "A-C--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GC-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GT-T---T----AC-G-----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq3369(name, align); +seqs.push_back(newSeq3369); +name = "GQY1XT001CAC92"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3370(name, align); +seqs.push_back(newSeq3370); +name = "GQY1XT001C9NQP"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3371(name, align); +seqs.push_back(newSeq3371); +name = "GQY1XT001C7B7J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3372(name, align); +seqs.push_back(newSeq3372); +name = "GQY1XT001BZMQ1"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3373(name, align); +seqs.push_back(newSeq3373); +name = "GQY1XT001BGTRD"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3374(name, align); +seqs.push_back(newSeq3374); +name = "GQY1XT001BEO0U"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-G--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3375(name, align); +seqs.push_back(newSeq3375); +name = "GQY1XT001BC4R9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3376(name, align); +seqs.push_back(newSeq3376); +name = "GQY1XT001BBDAM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3377(name, align); +seqs.push_back(newSeq3377); +name = "GQY1XT001BA7OW"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGG-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3378(name, align); +seqs.push_back(newSeq3378); +name = "GQY1XT001BA2Z8"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3379(name, align); +seqs.push_back(newSeq3379); +name = "GQY1XT001AZVWN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3380(name, align); +seqs.push_back(newSeq3380); +name = "GQY1XT001AIWV5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3381(name, align); +seqs.push_back(newSeq3381); +name = "GQY1XT001AHH7D"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3382(name, align); +seqs.push_back(newSeq3382); +name = "GQY1XT001AFC1R"; +align = "C-G--T-T--GA-A-A-C-T-G----GT-T-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3383(name, align); +seqs.push_back(newSeq3383); +name = "GQY1XT001A5T5N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3384(name, align); +seqs.push_back(newSeq3384); +name = "GQY1XT001EZD5U"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CT-A-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G----G---G----CA-AA----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3385(name, align); +seqs.push_back(newSeq3385); +name = "GQY1XT001EX08P"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3386(name, align); +seqs.push_back(newSeq3386); +name = "GQY1XT001EWHO5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-CGGG-A-ATG-C-G-T-G-GTGGT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CAGGG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CG------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3387(name, align); +seqs.push_back(newSeq3387); +name = "GQY1XT001EWC2A"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3388(name, align); +seqs.push_back(newSeq3388); +name = "GQY1XT001EWBQ9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3389(name, align); +seqs.push_back(newSeq3389); +name = "GQY1XT001EW9SQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3390(name, align); +seqs.push_back(newSeq3390); +name = "GQY1XT001EURAU"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CT-T-T-C--T-T-G-A-G-T-G-A-AG-TA-G-A-G-G-T-T--GG-C-GG-A-ATT-C-C-G-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-C-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CA-A--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--AA-C-T-A-G-GT-G-TGG--G-G-G---G----------TCT-GA-CC-----C-C-T-T-C-C-G-T-G-C-C--GC--A-GC--T-AA-C-G-C-A-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3391(name, align); +seqs.push_back(newSeq3391); +name = "GQY1XT001EUR5I"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3392(name, align); +seqs.push_back(newSeq3392); +name = "GQY1XT001EUFVJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3393(name, align); +seqs.push_back(newSeq3393); +name = "GQY1XT001EUCL8"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3394(name, align); +seqs.push_back(newSeq3394); +name = "GQY1XT001EU9WZ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GC-A-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3395(name, align); +seqs.push_back(newSeq3395); +name = "GQY1XT001EU8HV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--C-G-C-C-C--C-------GAGTGGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3396(name, align); +seqs.push_back(newSeq3396); +name = "GQY1XT001EU68M"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-A-C-A-ACGGTGAA"; +Sequence newSeq3397(name, align); +seqs.push_back(newSeq3397); +name = "GQY1XT001ETQB6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3398(name, align); +seqs.push_back(newSeq3398); +name = "GQY1XT001ETGP5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3399(name, align); +seqs.push_back(newSeq3399); +name = "GQY1XT001ESQ7W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GGCG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3400(name, align); +seqs.push_back(newSeq3400); +name = "GQY1XT001ERVXI"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--A---C----TG-A-----C-C-C-C-A-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3401(name, align); +seqs.push_back(newSeq3401); +name = "GQY1XT001ERTUE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-GCC--G--------AA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-C-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3402(name, align); +seqs.push_back(newSeq3402); +name = "GQY1XT001ERR74"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3403(name, align); +seqs.push_back(newSeq3403); +name = "GQY1XT001EROE2"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3404(name, align); +seqs.push_back(newSeq3404); +name = "GQY1XT001EQMAL"; +align = "C-GT-T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3405(name, align); +seqs.push_back(newSeq3405); +name = "GQY1XT001EQIZD"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AA-A-----G-C-T-T-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-C-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3406(name, align); +seqs.push_back(newSeq3406); +name = "GQY1XT001EQI8M"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T---GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3407(name, align); +seqs.push_back(newSeq3407); +name = "GQY1XT001EQHNJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CAGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3408(name, align); +seqs.push_back(newSeq3408); +name = "GQY1XT001EPCGG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3409(name, align); +seqs.push_back(newSeq3409); +name = "GQY1XT001ENW69"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATTCC-C-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G---T--G-G-G-G-G--G---T----CT-GA----C-C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq3410(name, align); +seqs.push_back(newSeq3410); +name = "GQY1XT001EMHOG"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3411(name, align); +seqs.push_back(newSeq3411); +name = "GQY1XT001EKU1S"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C------GAAT-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3412(name, align); +seqs.push_back(newSeq3412); +name = "GQY1XT001EKFMP"; +align = "C----T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGCA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3413(name, align); +seqs.push_back(newSeq3413); +name = "GQY1XT001EJF0G"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G-------TAT-GGA-----C-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3414(name, align); +seqs.push_back(newSeq3414); +name = "GQY1XT001EJA9N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3415(name, align); +seqs.push_back(newSeq3415); +name = "GQY1XT001EI5GF"; +align = "A-T--T-G--GA-A-A-C-T-A-C--CG-A-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3416(name, align); +seqs.push_back(newSeq3416); +name = "GQY1XT001EHOGV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--TGCCCCG-----------AGTG-AGG---------G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3417(name, align); +seqs.push_back(newSeq3417); +name = "GQY1XT001EHFJ7"; +align = "G-T--T-T--GA-A-A-C-T-G-T--CG-T-T-C--T-T-G-A-G-T-G-A-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-TGT--G-C-C-C-C--G---A----GT-G-----A-G-G-G-G-T-G-C-G-T-G-A-T--AC---AG-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3418(name, align); +seqs.push_back(newSeq3418); +name = "GQY1XT001EH8EF"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3419(name, align); +seqs.push_back(newSeq3419); +name = "GQY1XT001EGP61"; +align = "T-T--T-T--GG-A-A-C-T-G-C--GT-G-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G---G-G---------GACT-GA-CC-----C-C-T-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3420(name, align); +seqs.push_back(newSeq3420); +name = "GQY1XT001EG37S"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATCGG-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3421(name, align); +seqs.push_back(newSeq3421); +name = "GQY1XT001EFDKT"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----AA-AG----A-A-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3422(name, align); +seqs.push_back(newSeq3422); +name = "GQY1XT001EEA5J"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-G--G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3423(name, align); +seqs.push_back(newSeq3423); +name = "GQY1XT001EE9OP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3424(name, align); +seqs.push_back(newSeq3424); +name = "GQY1XT001EDY98"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-AGGG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T----G-G-G-G-----------TC-GA--------A-C-C-T-C-A-G-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCCGGCC-T-G-GGG-AG-TA--CG-GT-C-A-C-A-AGACTGAA"; +Sequence newSeq3425(name, align); +seqs.push_back(newSeq3425); +name = "GQY1XT001EDJBD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3426(name, align); +seqs.push_back(newSeq3426); +name = "GQY1XT001EDDHT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3427(name, align); +seqs.push_back(newSeq3427); +name = "GQY1XT001EDBZ5"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3428(name, align); +seqs.push_back(newSeq3428); +name = "GQY1XT001ED6SW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3429(name, align); +seqs.push_back(newSeq3429); +name = "GQY1XT001ECSR1"; +align = "C-G--T-T--GA-A-A-C-T-G----GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3430(name, align); +seqs.push_back(newSeq3430); +name = "GQY1XT001EC3JY"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-T-GG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T----G-G-G-G-G----------ACT-GA--C-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T---GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3431(name, align); +seqs.push_back(newSeq3431); +name = "GQY1XT001EBKJB"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3432(name, align); +seqs.push_back(newSeq3432); +name = "GQY1XT001EAZQS"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3433(name, align); +seqs.push_back(newSeq3433); +name = "GQY1XT001EAK70"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3434(name, align); +seqs.push_back(newSeq3434); +name = "GQY1XT001EA0NA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-G-G-T--T---A----AA-G-----A-A-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3435(name, align); +seqs.push_back(newSeq3435); +name = "GQY1XT001E49EJ"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-C--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3436(name, align); +seqs.push_back(newSeq3436); +name = "GQY1XT001E3SKF"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq3437(name, align); +seqs.push_back(newSeq3437); +name = "GQY1XT001E31H9"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3438(name, align); +seqs.push_back(newSeq3438); +name = "GQY1XT001E2MU1"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CC-G-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T---G----TC-A-----T-G-A-C-C-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq3439(name, align); +seqs.push_back(newSeq3439); +name = "GQY1XT001E1VKU"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC---CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-CGG-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGG-G-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3440(name, align); +seqs.push_back(newSeq3440); +name = "GQY1XT001E0YWZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-A-A-G-T-G-C-GC-GA-G---A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GATTGGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3441(name, align); +seqs.push_back(newSeq3441); +name = "GQY1XT001E0YUP"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3442(name, align); +seqs.push_back(newSeq3442); +name = "GQY1XT001E0XSE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3443(name, align); +seqs.push_back(newSeq3443); +name = "GQY1XT001E0JG7"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3444(name, align); +seqs.push_back(newSeq3444); +name = "GQY1XT001E011N"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3445(name, align); +seqs.push_back(newSeq3445); +name = "GQY1XT001DZHYF"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3446(name, align); +seqs.push_back(newSeq3446); +name = "GQY1XT001DZARG"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-G-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3447(name, align); +seqs.push_back(newSeq3447); +name = "GQY1XT001DYKHM"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-A-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3448(name, align); +seqs.push_back(newSeq3448); +name = "GQY1XT001DYG9X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3449(name, align); +seqs.push_back(newSeq3449); +name = "GQY1XT001DYB7Z"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-A-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3450(name, align); +seqs.push_back(newSeq3450); +name = "GQY1XT001DXVQD"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-T-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3451(name, align); +seqs.push_back(newSeq3451); +name = "GQY1XT001DWWEU"; +align = "T-T--T-T--GG-A-A-C-T-A-T--CA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3452(name, align); +seqs.push_back(newSeq3452); +name = "GQY1XT001DWW8X"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3453(name, align); +seqs.push_back(newSeq3453); +name = "GQY1XT001DWANV"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3454(name, align); +seqs.push_back(newSeq3454); +name = "GQY1XT001DUVQ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3455(name, align); +seqs.push_back(newSeq3455); +name = "GQY1XT001DUFB3"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--CAA------AT-GA------G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCT-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3456(name, align); +seqs.push_back(newSeq3456); +name = "GQY1XT001DUAZG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3457(name, align); +seqs.push_back(newSeq3457); +name = "GQY1XT001DTY0A"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq3458(name, align); +seqs.push_back(newSeq3458); +name = "GQY1XT001DTPL4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------AT-GA------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3459(name, align); +seqs.push_back(newSeq3459); +name = "GQY1XT001DTOJ7"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CT-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3460(name, align); +seqs.push_back(newSeq3460); +name = "GQY1XT001DTFRN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3461(name, align); +seqs.push_back(newSeq3461); +name = "GQY1XT001DTCQF"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3462(name, align); +seqs.push_back(newSeq3462); +name = "GQY1XT001DT5CD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T---GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3463(name, align); +seqs.push_back(newSeq3463); +name = "GQY1XT001DR68L"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-C-C-C--T-TGG-A-G-T-A-T-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CAGGG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA-CGG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3464(name, align); +seqs.push_back(newSeq3464); +name = "GQY1XT001DQJV7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-CGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3465(name, align); +seqs.push_back(newSeq3465); +name = "GQY1XT001DP0ZY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3466(name, align); +seqs.push_back(newSeq3466); +name = "GQY1XT001DOYGT"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-GT-A--CCGG-CG-CC-A-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-G-G-TT-G-T-C--C-G-G-G-T--CGA------AT-GA------G-A-T-C-T-G-G-G-C-G-G-C--GA--A-G-C-G-AA-A-G-C-G-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3467(name, align); +seqs.push_back(newSeq3467); +name = "GQY1XT001DOOAO"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3468(name, align); +seqs.push_back(newSeq3468); +name = "GQY1XT001DODSH"; +align = "T-T--T-G-GAA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-GCA-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3469(name, align); +seqs.push_back(newSeq3469); +name = "GQY1XT001DNYFM"; +align = "G-T--C-C--CG-A-A-C-T-G-G--CA-G-C-C--T-C-G-A-G-T-G-C-GG-TA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TT-A--CTGG-GC-CG-A-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-AGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CT-A-G-CCG-T-AAAC-G-A-TG-AA--CA-C-T-A-G-GT-G-TGG--GAGAG-------------ATAA-CT-C----------T-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-TGT-TCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq3470(name, align); +seqs.push_back(newSeq3470); +name = "GQY1XT001DNRUT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3471(name, align); +seqs.push_back(newSeq3471); +name = "GQY1XT001DN33J"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3472(name, align); +seqs.push_back(newSeq3472); +name = "GQY1XT001DMKPA"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-T-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3473(name, align); +seqs.push_back(newSeq3473); +name = "GQY1XT001DMDFW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-TCC--G-GCCCG------------ATT-GAG---------G-GTT-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3474(name, align); +seqs.push_back(newSeq3474); +name = "GQY1XT001DMAYV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3475(name, align); +seqs.push_back(newSeq3475); +name = "GQY1XT001DM99T"; +align = "A-C--T-G--GG-A-A-C-T-G-T--CA-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T-------CAA-GGA-----T-A-T-C-C-G---G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3476(name, align); +seqs.push_back(newSeq3476); +name = "GQY1XT001DLOR2"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3477(name, align); +seqs.push_back(newSeq3477); +name = "GQY1XT001DLAQ3"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3478(name, align); +seqs.push_back(newSeq3478); +name = "GQY1XT001DL3ZL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3479(name, align); +seqs.push_back(newSeq3479); +name = "GQY1XT001DKYGN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T----G-T-G-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3480(name, align); +seqs.push_back(newSeq3480); +name = "GQY1XT001DKRZR"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T---AGT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3481(name, align); +seqs.push_back(newSeq3481); +name = "GQY1XT001DJU9C"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3482(name, align); +seqs.push_back(newSeq3482); +name = "GQY1XT001DJTM6"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3483(name, align); +seqs.push_back(newSeq3483); +name = "GQY1XT001DJ3G8"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3484(name, align); +seqs.push_back(newSeq3484); +name = "GQY1XT001DIUQ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3485(name, align); +seqs.push_back(newSeq3485); +name = "GQY1XT001DITX4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-TG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3486(name, align); +seqs.push_back(newSeq3486); +name = "GQY1XT001DIODY"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3487(name, align); +seqs.push_back(newSeq3487); +name = "GQY1XT001DHO1K"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3488(name, align); +seqs.push_back(newSeq3488); +name = "GQY1XT001DFPH2"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3489(name, align); +seqs.push_back(newSeq3489); +name = "GQY1XT001DF5SO"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A----------GCA-AA-GC-----T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3490(name, align); +seqs.push_back(newSeq3490); +name = "GQY1XT001DEPXH"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CT-C-G-C--AAGAATGAA"; +Sequence newSeq3491(name, align); +seqs.push_back(newSeq3491); +name = "GQY1XT001DD0KI"; +align = "..T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-AT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3492(name, align); +seqs.push_back(newSeq3492); +name = "GQY1XT001DCSTX"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-G-G-G-T--T-------GTC-AT------G-A-C-T-T-C-T-G-T-G-C-C--GC--C-G-C-T-AA-C-G-T-A-T-TAA-G-TAT-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGATTAAA"; +Sequence newSeq3493(name, align); +seqs.push_back(newSeq3493); +name = "GQY1XT001DCMTB"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3494(name, align); +seqs.push_back(newSeq3494); +name = "GQY1XT001DBW7V"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3495(name, align); +seqs.push_back(newSeq3495); +name = "GQY1XT001DBDYX"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3496(name, align); +seqs.push_back(newSeq3496); +name = "GQY1XT001DBBSK"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3497(name, align); +seqs.push_back(newSeq3497); +name = "GQY1XT001DAYUX"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-G-C----------CCG-AA-GG-----G-C-G-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3498(name, align); +seqs.push_back(newSeq3498); +name = "GQY1XT001DATMY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-GTGGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3499(name, align); +seqs.push_back(newSeq3499); +name = "GQY1XT001DART7"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-A-G--G---C----AA-A-----G-C-C-T-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3500(name, align); +seqs.push_back(newSeq3500); +name = "GQY1XT001DAEXA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3501(name, align); +seqs.push_back(newSeq3501); +name = "GQY1XT001DAC6R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3502(name, align); +seqs.push_back(newSeq3502); +name = "GQY1XT001DA16W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3503(name, align); +seqs.push_back(newSeq3503); +name = "GQY1XT001D9WQ7"; +align = "A----T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-AC-TG-T-G-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G-------CAA-AG------C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3504(name, align); +seqs.push_back(newSeq3504); +name = "GQY1XT001D9E4Z"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-ACTG-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3505(name, align); +seqs.push_back(newSeq3505); +name = "GQY1XT001D9DNF"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--CAA-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAGACTA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G------------GGG-AAT---------G-GCCCC-T-G-G-GTG-C--CAC-A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3506(name, align); +seqs.push_back(newSeq3506); +name = "GQY1XT001D96WW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T---G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C---G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3507(name, align); +seqs.push_back(newSeq3507); +name = "GQY1XT001D8LM1"; +align = "T-C--T-G--GA-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3508(name, align); +seqs.push_back(newSeq3508); +name = "GQY1XT001D8H0J"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3509(name, align); +seqs.push_back(newSeq3509); +name = "GQY1XT001D89HM"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3510(name, align); +seqs.push_back(newSeq3510); +name = "GQY1XT001D89AO"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CGG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3511(name, align); +seqs.push_back(newSeq3511); +name = "GQY1XT001D83YP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-G-T-G--T---G----AT-G-----A-A-C-G-C-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq3512(name, align); +seqs.push_back(newSeq3512); +name = "GQY1XT001D83TG"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C----------CGAGTG-AG-----G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3513(name, align); +seqs.push_back(newSeq3513); +name = "GQY1XT001D7V0C"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AG-G-----G-C-C-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3514(name, align); +seqs.push_back(newSeq3514); +name = "GQY1XT001D7S3W"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3515(name, align); +seqs.push_back(newSeq3515); +name = "GQY1XT001D7ICJ"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGC-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3516(name, align); +seqs.push_back(newSeq3516); +name = "GQY1XT001D6ICR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3517(name, align); +seqs.push_back(newSeq3517); +name = "GQY1XT001D6GBI"; +align = "C-G--T-T--GT-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3518(name, align); +seqs.push_back(newSeq3518); +name = "GQY1XT001D5Z5M"; +align = "T-T--T-G--GA-A-A-CTT-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3519(name, align); +seqs.push_back(newSeq3519); +name = "GQY1XT001D5WBP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3520(name, align); +seqs.push_back(newSeq3520); +name = "GQY1XT001D5DGI"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-G-T-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3521(name, align); +seqs.push_back(newSeq3521); +name = "GQY1XT001D4U2W"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CCGC-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-CGG-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3522(name, align); +seqs.push_back(newSeq3522); +name = "GQY1XT001D4DZQ"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-G-T-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-GC-G-G-G-G----A---C----TG-AC----C-C-C-C-T-G-C---G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3523(name, align); +seqs.push_back(newSeq3523); +name = "GQY1XT001D3OAC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-CGT-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3524(name, align); +seqs.push_back(newSeq3524); +name = "GQY1XT001D1YOJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3525(name, align); +seqs.push_back(newSeq3525); +name = "GQY1XT001D1XZA"; +align = "A-T--T-G--GG-A-A-C-T-G-C--CC-T-G-C--T-G-G-A-G-T-G-C-CG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3526(name, align); +seqs.push_back(newSeq3526); +name = "GQY1XT001D000W"; +align = "C-G--C-G--TG-A-A-C-T-G-A--TT-G-T-C--T-T-A-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3527(name, align); +seqs.push_back(newSeq3527); +name = "GQY1XT001CZXNI"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGA-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--AG------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3528(name, align); +seqs.push_back(newSeq3528); +name = "GQY1XT001CZW3Z"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--TG-TCC-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3529(name, align); +seqs.push_back(newSeq3529); +name = "GQY1XT001CYR32"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-A-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3530(name, align); +seqs.push_back(newSeq3530); +name = "GQY1XT001CYCJN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3531(name, align); +seqs.push_back(newSeq3531); +name = "GQY1XT001CYC4U"; +align = "C-G--T-T--GA-A-A-C-T-G-G---A-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3532(name, align); +seqs.push_back(newSeq3532); +name = "GQY1XT001CXS6D"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3533(name, align); +seqs.push_back(newSeq3533); +name = "GQY1XT001CX8LX"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3534(name, align); +seqs.push_back(newSeq3534); +name = "GQY1XT001CX2Q2"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--A-G-G-G-G--G---C----AT-G-----G-C-C-C-C-C-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3535(name, align); +seqs.push_back(newSeq3535); +name = "GQY1XT001CW98H"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-TA-G-T-A-G----T---T----TC-GA----T-G-C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3536(name, align); +seqs.push_back(newSeq3536); +name = "GQY1XT001CVV85"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-AG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGG-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3537(name, align); +seqs.push_back(newSeq3537); +name = "GQY1XT001CVRJI"; +align = "C-T--C-T--GA-TAA-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-GTGGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3538(name, align); +seqs.push_back(newSeq3538); +name = "GQY1XT001CVOL0"; +align = "T-C--T-G-GAA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3539(name, align); +seqs.push_back(newSeq3539); +name = "GQY1XT001CVFNC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGGCCG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG--AA-G-C-G-GTGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3540(name, align); +seqs.push_back(newSeq3540); +name = "GQY1XT001CV1LL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3541(name, align); +seqs.push_back(newSeq3541); +name = "GQY1XT001CV0DW"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-GCC--G-------AAC-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3542(name, align); +seqs.push_back(newSeq3542); +name = "GQY1XT001CTWYV"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3543(name, align); +seqs.push_back(newSeq3543); +name = "GQY1XT001CTWB6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3544(name, align); +seqs.push_back(newSeq3544); +name = "GQY1XT001CTRQ3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-CT-T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-A-T-G-GT-GT-A-G-C-GT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3545(name, align); +seqs.push_back(newSeq3545); +name = "GQY1XT001CTKRX"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3546(name, align); +seqs.push_back(newSeq3546); +name = "GQY1XT001CTK4X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-T-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CGA------TT-GA------G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3547(name, align); +seqs.push_back(newSeq3547); +name = "GQY1XT001CTK21"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3548(name, align); +seqs.push_back(newSeq3548); +name = "GQY1XT001CTF0L"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3549(name, align); +seqs.push_back(newSeq3549); +name = "GQY1XT001CT2JM"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3550(name, align); +seqs.push_back(newSeq3550); +name = "GQY1XT001CSHR4"; +align = "A-T--T-G--GG-A-A-C-T-A-C--CG-G-G-C--T-G-G-A-G-T-G-C-CG-GA-G-A-G-G-T-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3551(name, align); +seqs.push_back(newSeq3551); +name = "GQY1XT001CRUPS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3552(name, align); +seqs.push_back(newSeq3552); +name = "GQY1XT001CRGVT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3553(name, align); +seqs.push_back(newSeq3553); +name = "GQY1XT001CQRH7"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3554(name, align); +seqs.push_back(newSeq3554); +name = "GQY1XT001CQI4I"; +align = "T-C--T-G--GA-A-A-C-T-G-C--GT-C-G-C--T-G-G-A-G-T-A-C-GG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-TGG-C-CT-G--CTGG-AC-CG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AGA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-TCG--G-G-G-G-A--C---G----AC-A-----G-T-G-C-C-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3555(name, align); +seqs.push_back(newSeq3555); +name = "GQY1XT001CQFTX"; +align = "C-A--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3556(name, align); +seqs.push_back(newSeq3556); +name = "GQY1XT001CQ5GA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-GAG-G--T---T----TC-C-----G-C-C-C-T-T-C-A-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3557(name, align); +seqs.push_back(newSeq3557); +name = "GQY1XT001CPMSS"; +align = "A-T--T-T--CA-A-A-C-T-G-G--AA-G-T-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G--A-------CTG-AC------C-C-C-C-T-G-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-CGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3558(name, align); +seqs.push_back(newSeq3558); +name = "GQY1XT001CP08F"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3559(name, align); +seqs.push_back(newSeq3559); +name = "GQY1XT001CO8LA"; +align = "T-C--T-A--TA-A-A-C-T-G-A--TA-G-A-C--T-A-G-A-G-T-G-T-GG-TA-G-A-G-G-C-A--AG-T-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-TT-G--CTGG-GC-CA-T-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-GT-G-T-C----G-G---------------GT-TA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3560(name, align); +seqs.push_back(newSeq3560); +name = "GQY1XT001CNQRQ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-C-GT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3561(name, align); +seqs.push_back(newSeq3561); +name = "GQY1XT001CNIFR"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----A-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3562(name, align); +seqs.push_back(newSeq3562); +name = "GQY1XT001CN1SH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3563(name, align); +seqs.push_back(newSeq3563); +name = "GQY1XT001CN0JB"; +align = "..T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3564(name, align); +seqs.push_back(newSeq3564); +name = "GQY1XT001CMX6S"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3565(name, align); +seqs.push_back(newSeq3565); +name = "GQY1XT001CM9KO"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-A-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3566(name, align); +seqs.push_back(newSeq3566); +name = "GQY1XT001CM17B"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3567(name, align); +seqs.push_back(newSeq3567); +name = "GQY1XT001CLYL8"; +align = "T-T--T-A--GA-A-A-C-T-G-C--TC-A-G-C--T-A-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-T-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-GA---G---C----AA-AA----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3568(name, align); +seqs.push_back(newSeq3568); +name = "GQY1XT001CLI56"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3569(name, align); +seqs.push_back(newSeq3569); +name = "GQY1XT001CKSVL"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq3570(name, align); +seqs.push_back(newSeq3570); +name = "GQY1XT001CJ6J0"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3571(name, align); +seqs.push_back(newSeq3571); +name = "GQY1XT001CJ1YF"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-C-GT-G--AA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-C-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3572(name, align); +seqs.push_back(newSeq3572); +name = "GQY1XT001CIODT"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--T---T----TA-CG----G-A-C-G-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3573(name, align); +seqs.push_back(newSeq3573); +name = "GQY1XT001CIA0D"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GG--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3574(name, align); +seqs.push_back(newSeq3574); +name = "GQY1XT001CH6H7"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-A-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-CGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---CT---AG-A-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3575(name, align); +seqs.push_back(newSeq3575); +name = "GQY1XT001CH5CN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-A-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3576(name, align); +seqs.push_back(newSeq3576); +name = "GQY1XT001CH58X"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3577(name, align); +seqs.push_back(newSeq3577); +name = "GQY1XT001CGXD7"; +align = "C-G--T-T-GAA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3578(name, align); +seqs.push_back(newSeq3578); +name = "GQY1XT001CGH66"; +align = "T-T--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3579(name, align); +seqs.push_back(newSeq3579); +name = "GQY1XT001CGF2P"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3580(name, align); +seqs.push_back(newSeq3580); +name = "GQY1XT001CG622"; +align = "C----A-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3581(name, align); +seqs.push_back(newSeq3581); +name = "GQY1XT001CG521"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G---G-T-G--G---G----CA-AA----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3582(name, align); +seqs.push_back(newSeq3582); +name = "GQY1XT001CG4OF"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3583(name, align); +seqs.push_back(newSeq3583); +name = "GQY1XT001CFS8O"; +align = "T-T--T-G--GG-A-A-C-T-G-T--AC-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AT-T-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3584(name, align); +seqs.push_back(newSeq3584); +name = "GQY1XT001CEVMY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GC-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3585(name, align); +seqs.push_back(newSeq3585); +name = "GQY1XT001CE4Q0"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-G-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-CGT-A-G-GT-G-T-C--G-G-G-G-C--C---CT---AA-G-----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3586(name, align); +seqs.push_back(newSeq3586); +name = "GQY1XT001CDJUW"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-CT-G--CTGG-ACAGG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---G----CA-A-----A-GCC-C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3587(name, align); +seqs.push_back(newSeq3587); +name = "GQY1XT001CBSLG"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3588(name, align); +seqs.push_back(newSeq3588); +name = "GQY1XT001CB5T5"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3589(name, align); +seqs.push_back(newSeq3589); +name = "GQY1XT001C9U6C"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-T-G--G---C----AA-A-----G-C-C-A-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3590(name, align); +seqs.push_back(newSeq3590); +name = "GQY1XT001C9BPY"; +align = "T-C--T-G--GA-A-A-C-T-A-T--GT-G-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-G--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--C---A----GA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq3591(name, align); +seqs.push_back(newSeq3591); +name = "GQY1XT001C98BJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3592(name, align); +seqs.push_back(newSeq3592); +name = "GQY1XT001C8VLV"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-T-TC-T--CTGG-GC-CA-A-G-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-T--A-G-T-A-G--T-------TTC-GAT-----G-C-T-A-C-T-A-G-T-G-C-C--GG--A-G-T-A-AA-C-A-C-A-A-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3593(name, align); +seqs.push_back(newSeq3593); +name = "GQY1XT001C8RL3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3594(name, align); +seqs.push_back(newSeq3594); +name = "GQY1XT001C8QJ3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3595(name, align); +seqs.push_back(newSeq3595); +name = "GQY1XT001C8255"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-TGCC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C-------TTC-GGC-----G---T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA-CGG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3596(name, align); +seqs.push_back(newSeq3596); +name = "GQY1XT001C7ZOX"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-AC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3597(name, align); +seqs.push_back(newSeq3597); +name = "GQY1XT001C7SH9"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGG-G-G-G--G-------GAGTTGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3598(name, align); +seqs.push_back(newSeq3598); +name = "GQY1XT001C7KNS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-GCG-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-CGG-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--CG------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3599(name, align); +seqs.push_back(newSeq3599); +name = "GQY1XT001C75NS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3600(name, align); +seqs.push_back(newSeq3600); +name = "GQY1XT001C6WKE"; +align = "A-T--T-G--GA-A-A-C-T-G-T--CG-G-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GT-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3601(name, align); +seqs.push_back(newSeq3601); +name = "GQY1XT001C6SJY"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-AACG-GTGAA"; +Sequence newSeq3602(name, align); +seqs.push_back(newSeq3602); +name = "GQY1XT001C6KPW"; +align = "T-T--T-A--GA-A-A-C-C-G-G--CA-G-G-C--T-T-G-A-G-T-A-T-GG-TA-G-A-G-G-C-A--AA-C-GG-A-ATT-T-C-T-A-GT-GT-A-G-CGGT-A-GAA--TG-C-GT-AG--AT-A-TT-A-G-A-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-G--CTGG-GC-CA-T-C-ACT--GACG-GTC-A-GG--G-A-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-A-GT-G-T-C----G-G---------------GC-AA------------C---C-G-G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TGC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3603(name, align); +seqs.push_back(newSeq3603); +name = "GQY1XT001C68RV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-TGG-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3604(name, align); +seqs.push_back(newSeq3604); +name = "GQY1XT001C5JU1"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-GAC--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3605(name, align); +seqs.push_back(newSeq3605); +name = "GQY1XT001C5CE7"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3606(name, align); +seqs.push_back(newSeq3606); +name = "GQY1XT001C54I8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--CGA------TT-GA------G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3607(name, align); +seqs.push_back(newSeq3607); +name = "GQY1XT001C51HZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3608(name, align); +seqs.push_back(newSeq3608); +name = "GQY1XT001C49GL"; +align = "T-T--T-G--GA-A-A-C-T-G-C--GA-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-G-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-CGGG-G-G-GC-----------AAA-GCC---------C-C-T-C-G-G-T-G-C-C--GC--C-G-C-T-AA-C-G-C-A-A-TAA-G-CAC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3609(name, align); +seqs.push_back(newSeq3609); +name = "GQY1XT001C44EL"; +align = "T-T--T-TG-GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GTAGT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3610(name, align); +seqs.push_back(newSeq3610); +name = "GQY1XT001C3S0Z"; +align = "A-T--T-T--GG-A-A-C-T-G-T--GT-A-G-C--T-G-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGA-C-TT-T--CTGG-AC-TG-T-A-CCT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-T--AGC-G-AA-CG-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-A--G-GAG-G-T--A---T----CG-A-----C-T-C-C-T-T-C-T-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-GCC-T-G-GGG-AC-TA--CG-GT-C-G-C-A-AGACTAAA"; +Sequence newSeq3611(name, align); +seqs.push_back(newSeq3611); +name = "GQY1XT001C2Y41"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3612(name, align); +seqs.push_back(newSeq3612); +name = "GQY1XT001C2ODJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3613(name, align); +seqs.push_back(newSeq3613); +name = "GQY1XT001C2JT7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3614(name, align); +seqs.push_back(newSeq3614); +name = "GQY1XT001C27UP"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AG-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A----------GCA-AA-GC-----T-T-C-T-C-G-G-T-G-C-C--GC--T-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3615(name, align); +seqs.push_back(newSeq3615); +name = "GQY1XT001C0NUT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GATTGGG-----G-G-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3616(name, align); +seqs.push_back(newSeq3616); +name = "GQY1XT001BZV37"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C----T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3617(name, align); +seqs.push_back(newSeq3617); +name = "GQY1XT001BZSJU"; +align = "C-T--C-T--GA-T-A-C-T-G----TC-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AAC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3618(name, align); +seqs.push_back(newSeq3618); +name = "GQY1XT001BZ3PM"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-T-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-C--C---C----TA-AG----G-G-G-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3619(name, align); +seqs.push_back(newSeq3619); +name = "GQY1XT001BZ2RC"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG----ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3620(name, align); +seqs.push_back(newSeq3620); +name = "GQY1XT001BYZUD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-TA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3621(name, align); +seqs.push_back(newSeq3621); +name = "GQY1XT001BYT57"; +align = "T-T--C-T--GA-T-A-C-T-G-C--TG-T-G-C--T-C-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-A-G-A--G---C----AA-A-----G-C-T-T-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3622(name, align); +seqs.push_back(newSeq3622); +name = "GQY1XT001BYKA3"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3623(name, align); +seqs.push_back(newSeq3623); +name = "GQY1XT001BXVU5"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3624(name, align); +seqs.push_back(newSeq3624); +name = "GQY1XT001BX7JZ"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3625(name, align); +seqs.push_back(newSeq3625); +name = "GQY1XT001BW40O"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3626(name, align); +seqs.push_back(newSeq3626); +name = "GQY1XT001BVWDT"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAT-TGG-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3627(name, align); +seqs.push_back(newSeq3627); +name = "GQY1XT001BVHR6"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--CC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3628(name, align); +seqs.push_back(newSeq3628); +name = "GQY1XT001BT9UW"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-G-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq3629(name, align); +seqs.push_back(newSeq3629); +name = "GQY1XT001BSY3L"; +align = "..T--T-G--GA-A-A-C-T-G-T--GC-T-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3630(name, align); +seqs.push_back(newSeq3630); +name = "GQY1XT001BSMQ4"; +align = "C-G--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3631(name, align); +seqs.push_back(newSeq3631); +name = "GQY1XT001BS13U"; +align = "A-T--T-T--GA-A-A-C-T-G----TA-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------ACT-GA-CC-----C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3632(name, align); +seqs.push_back(newSeq3632); +name = "GQY1XT001BRTL5"; +align = "C-G----T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3633(name, align); +seqs.push_back(newSeq3633); +name = "GQY1XT001BR72O"; +align = "C-G--T-T--G--A-A-C-T---G--AT-G-C-C--T-T-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3634(name, align); +seqs.push_back(newSeq3634); +name = "GQY1XT001BQZ4F"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C--AAGGTTGAA"; +Sequence newSeq3635(name, align); +seqs.push_back(newSeq3635); +name = "GQY1XT001BQWBU"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG-ACT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-TA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TA-C-T-A-A-G--G-T-G--T-C-G-G-G------------T-TA----------C-C---G---G-T-G-C-T--GA--A-G-T-T-AA-C-A-C-A-T-TAA-G-TAC-TCC-GCC-T-G-AGT-AG-TA--CG-GT-C-G-C-A-AGGCTGAA"; +Sequence newSeq3636(name, align); +seqs.push_back(newSeq3636); +name = "GQY1XT001BQLUR"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3637(name, align); +seqs.push_back(newSeq3637); +name = "GQY1XT001BQB6D"; +align = "A-T--T-T--GA-A-A-C-T-G-T--AC-T-T-C--T-T-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AT-C-GG-A-ATT-C-C-G-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-C-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TT-G--CTGG-AC-AG-T-A-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G----------TCT-GA-CC-----CCC-T-C-C-G---T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3638(name, align); +seqs.push_back(newSeq3638); +name = "GQY1XT001BQ5G4"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G------GAAG-TGG-----C-C-C-C-TCG-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3639(name, align); +seqs.push_back(newSeq3639); +name = "GQY1XT001BQ1S6"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-GTCCGG-T-C-C-G-----------ATTG-GGG---------A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3640(name, align); +seqs.push_back(newSeq3640); +name = "GQY1XT001BQ0GL"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3641(name, align); +seqs.push_back(newSeq3641); +name = "GQY1XT001BPOSP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3642(name, align); +seqs.push_back(newSeq3642); +name = "GQY1XT001BOSE8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--CGGGG-G-G--A--------TT-GA------C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3643(name, align); +seqs.push_back(newSeq3643); +name = "GQY1XT001BOCB0"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3644(name, align); +seqs.push_back(newSeq3644); +name = "GQY1XT001BNOH7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-C--C-G-G-C-C--CGA------TT-GG------G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-TGG-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3645(name, align); +seqs.push_back(newSeq3645); +name = "GQY1XT001BN99E"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--GC--C----AA-G-----G-C-C-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3646(name, align); +seqs.push_back(newSeq3646); +name = "GQY1XT001BMUIK"; +align = "C-GT-T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3647(name, align); +seqs.push_back(newSeq3647); +name = "GQY1XT001BMIAQ"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----GTC-C-A-T-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3648(name, align); +seqs.push_back(newSeq3648); +name = "GQY1XT001BMFUU"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3649(name, align); +seqs.push_back(newSeq3649); +name = "GQY1XT001BM7K9"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CG------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3650(name, align); +seqs.push_back(newSeq3650); +name = "GQY1XT001BM7EA"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3651(name, align); +seqs.push_back(newSeq3651); +name = "GQY1XT001BKZRW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3652(name, align); +seqs.push_back(newSeq3652); +name = "GQY1XT001BKFMA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3653(name, align); +seqs.push_back(newSeq3653); +name = "GQY1XT001BKFH5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3654(name, align); +seqs.push_back(newSeq3654); +name = "GQY1XT001BKAWE"; +align = "G-T--T-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--CG-C-T-A-G-GT-G-T----G-G-G-G-G-----------AC-CT-G------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-CGT--CC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq3655(name, align); +seqs.push_back(newSeq3655); +name = "GQY1XT001BJYSJ"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3656(name, align); +seqs.push_back(newSeq3656); +name = "GQY1XT001BJ8H5"; +align = "G-T--C-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT-C-C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCCG-G-C-C-C-G----------ATT-GG-G------G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3657(name, align); +seqs.push_back(newSeq3657); +name = "GQY1XT001BI3LM"; +align = "C-A--T-T--GA-A-A-C-T-G-G---G-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-G--GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------G-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3658(name, align); +seqs.push_back(newSeq3658); +name = "GQY1XT001BHXDE"; +align = "C-C--T-G--TG-A-A-C-T-G-G--GG-G-A-C--T-T-G-A-G-T-A-T-CG-GA-G-A-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-GA-A-A-ACT--GACG-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AC--TA-C-T-A-G-GT-G-T-C--G-G-G-C-A--G---C----AA-A-----G-C-T-G-T-T-C-G-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-A-TAA-G-TAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3659(name, align); +seqs.push_back(newSeq3659); +name = "GQY1XT001BGQ7E"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-AGC-TG-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3660(name, align); +seqs.push_back(newSeq3660); +name = "GQY1XT001BG450"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CA-T-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-GA-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C----AG-G-----G-C-C-C-C-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3661(name, align); +seqs.push_back(newSeq3661); +name = "GQY1XT001BFZK3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-TGGT-G-AAA--TG-C-AT-AG--AT-A-TC-G-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3662(name, align); +seqs.push_back(newSeq3662); +name = "GQY1XT001BF30O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------AAA-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3663(name, align); +seqs.push_back(newSeq3663); +name = "GQY1XT001BF2QX"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-AGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3664(name, align); +seqs.push_back(newSeq3664); +name = "GQY1XT001BEJZT"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3665(name, align); +seqs.push_back(newSeq3665); +name = "GQY1XT001BEBW7"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq3666(name, align); +seqs.push_back(newSeq3666); +name = "GQY1XT001BDRSD"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-GA--TG-C-C-A-G-CT-G-T-C--C-G-G-G-C--C-------GAA-TGG-----G-G-C-C-T-G-G-G-T-G-G-C--AA--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGATGAA"; +Sequence newSeq3667(name, align); +seqs.push_back(newSeq3667); +name = "GQY1XT001BD828"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T----C-G-G---C--G--------AT-AA------A-A-T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3668(name, align); +seqs.push_back(newSeq3668); +name = "GQY1XT001BCLXW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3669(name, align); +seqs.push_back(newSeq3669); +name = "GQY1XT001BCKVK"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AT--AA-C-T-G-G-TT-G-T-C--G-G-C-G------------ATA-AAA---------T-G-T-C-G-G-T-G-A-C--TA--A-G-C-G-AA-A-G-C-G-A-TAA-G-TTA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq3670(name, align); +seqs.push_back(newSeq3670); +name = "GQY1XT001BCISS"; +align = "C-G----T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3671(name, align); +seqs.push_back(newSeq3671); +name = "GQY1XT001BCH1F"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3672(name, align); +seqs.push_back(newSeq3672); +name = "GQY1XT001BAXRL"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-A-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3673(name, align); +seqs.push_back(newSeq3673); +name = "GQY1XT001BA51O"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3674(name, align); +seqs.push_back(newSeq3674); +name = "GQY1XT001B9XTN"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-TCC--G-G-T-T------------CTACGGG---------A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3675(name, align); +seqs.push_back(newSeq3675); +name = "GQY1XT001B96VA"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3676(name, align); +seqs.push_back(newSeq3676); +name = "GQY1XT001B8U6Y"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-CCGGGG-G-G-G--A--------TT-GA------C-C-C-C-TGG-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3677(name, align); +seqs.push_back(newSeq3677); +name = "GQY1XT001B8QB4"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--CG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3678(name, align); +seqs.push_back(newSeq3678); +name = "GQY1XT001B8DXP"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3679(name, align); +seqs.push_back(newSeq3679); +name = "GQY1XT001B8BT5"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3680(name, align); +seqs.push_back(newSeq3680); +name = "GQY1XT001B85U6"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---C----TG-A-----C-C-C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C--AAGGTTGAA"; +Sequence newSeq3681(name, align); +seqs.push_back(newSeq3681); +name = "GQY1XT001B7EFI"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3682(name, align); +seqs.push_back(newSeq3682); +name = "GQY1XT001B74TO"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-CG-GA-G-A-G-G-T-C--AT-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-A-TG-A--CTGG-AC-GG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-TGG-C-G-T-G-C-C--GC--A-G-T-T-AA-C-A-C-A-A-TAA-G-TAT-TGCACCC-G-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3683(name, align); +seqs.push_back(newSeq3683); +name = "GQY1XT001B6FIY"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3684(name, align); +seqs.push_back(newSeq3684); +name = "GQY1XT001B64TM"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATA-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3685(name, align); +seqs.push_back(newSeq3685); +name = "GQY1XT001B617J"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3686(name, align); +seqs.push_back(newSeq3686); +name = "GQY1XT001B5MNA"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-TAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3687(name, align); +seqs.push_back(newSeq3687); +name = "GQY1XT001B5G9X"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-T--C-------GAG-TGA-----G-A-T-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3688(name, align); +seqs.push_back(newSeq3688); +name = "GQY1XT001B56EM"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--CGA------AT-GA------G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3689(name, align); +seqs.push_back(newSeq3689); +name = "GQY1XT001B4UML"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T---G-CG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-CG-G-G-G-A-C--C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3690(name, align); +seqs.push_back(newSeq3690); +name = "GQY1XT001B4MUT"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-G-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3691(name, align); +seqs.push_back(newSeq3691); +name = "GQY1XT001B40W5"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3692(name, align); +seqs.push_back(newSeq3692); +name = "GQY1XT001B3W8S"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3693(name, align); +seqs.push_back(newSeq3693); +name = "GQY1XT001B3N9K"; +align = "C-G----T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GTGG-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3694(name, align); +seqs.push_back(newSeq3694); +name = "GQY1XT001B3EYH"; +align = "T-T--T-G--GA-A-A-C-T-G-G--CG-A-A-C--T-A-G-A-G-T-G-C-GG-GA-G-G-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AG-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3695(name, align); +seqs.push_back(newSeq3695); +name = "GQY1XT001B384B"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3696(name, align); +seqs.push_back(newSeq3696); +name = "GQY1XT001B2RDE"; +align = "C-G--T-T--TG-A-A-A-C-T-G--AT-T-G-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3697(name, align); +seqs.push_back(newSeq3697); +name = "GQY1XT001B2EC3"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CGA------TT-GG------G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3698(name, align); +seqs.push_back(newSeq3698); +name = "GQY1XT001B2DYC"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ATC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3699(name, align); +seqs.push_back(newSeq3699); +name = "GQY1XT001B2A7O"; +align = "C-GT-T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3700(name, align); +seqs.push_back(newSeq3700); +name = "GQY1XT001B23BY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TA--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C--------TA-CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3701(name, align); +seqs.push_back(newSeq3701); +name = "GQY1XT001B1FYN"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-A-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A----------GCA-AA-GC-----T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3702(name, align); +seqs.push_back(newSeq3702); +name = "GQY1XT001B0IDP"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CG-G-G-C--T-G-G-A-G-T-G-C-AG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--CA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---C----TG-A-----C-C-C-C-T-T-C-C-G-T-G-C-C--GG--A-G-T-T-AA-C-A-C-A-A-TAA-G-TGA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3703(name, align); +seqs.push_back(newSeq3703); +name = "GQY1XT001AZT7W"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TC-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--C-------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3704(name, align); +seqs.push_back(newSeq3704); +name = "GQY1XT001AZAZH"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-CAGG-TA-G-A-G-G-T-G--GG-C-GG-A-ATT-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-TT-AG--AT-A-TC-A-C-G-AA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-TC-A--CTGG-AC-TG-C-A-ACT--GACA-CTG-A-TG--C-T-CG-AAA-G-T-G-TGGG-T--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-C-G-CT-G-T-T--T-G-C-G------------ATA-TAC---------A-G-T-A-A-G-C-G-G-C--CA--A-G-C-G-AA-A-G-C-A-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3705(name, align); +seqs.push_back(newSeq3705); +name = "GQY1XT001AZ6QQ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--TA-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3706(name, align); +seqs.push_back(newSeq3706); +name = "GQY1XT001AYUTA"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TC-A-G-G-AG-G-A-AC-A-CC-GG-C-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-C-A-ACT--GACG-TTG-A-GG--C-C-CG-AAA-G-C-G-TGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-TA--TA-C-C-A-G-GT-G-T-C--G-G-A-T-A--T---C----AA-G-----G-A-T-A-T-C-C-G-G-T-G-C-C--GA--A-G-C-A-AA-C-G-C-A-T-TAA-G-TAT-ACC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3707(name, align); +seqs.push_back(newSeq3707); +name = "GQY1XT001AYNA7"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-T--C-G-G-G-G--A-------GAA-TGA-----T-C-C-C-T-G-A-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3708(name, align); +seqs.push_back(newSeq3708); +name = "GQY1XT001AYHAK"; +align = "G-T--T-C--CG-G-A-C-T-G-G--GC-G-G-C--T-C-G-A-G-T-G-C-GG-TA-G-A-G-G-A-G--AG-C-GG-A-ATT---C-C-G-GT-GT-A-G-CGGT-G-GAA--TG-C-GC-AG--AT-A-TC-G-G-G-AA-G-A-AC-A-CC-GA-T-G-GC-GAA-GG-CAG-C-TC-T--CTGG-GC-CG-T-C-ACT--GACG-CTG-A-GG--C-G-CG-AAA-G-C-T-GGGG-G--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CC-A-G-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G-----------AT-CC-C------C-C-C-T-C-C-G-T-G-C-C--GC--A-G-C-C-AA-C-G-C-A-T-TAA-G-TAT-CCC-GCC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTAAA"; +Sequence newSeq3709(name, align); +seqs.push_back(newSeq3709); +name = "GQY1XT001AY4WP"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3710(name, align); +seqs.push_back(newSeq3710); +name = "GQY1XT001AX8EE"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GG-G-C-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3711(name, align); +seqs.push_back(newSeq3711); +name = "GQY1XT001AWZIH"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3712(name, align); +seqs.push_back(newSeq3712); +name = "GQY1XT001AWRVU"; +align = "C-G--T-T-GAA-A-A-C-T-G-G--TG-T-C-C--T-A-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-T-C--CG------GAA-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3713(name, align); +seqs.push_back(newSeq3713); +name = "GQY1XT001AWJ1M"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-----G-G--G-------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3714(name, align); +seqs.push_back(newSeq3714); +name = "GQY1XT001AW2T0"; +align = "T-T--T-T--GA-A-A-C-T-G-T--GT-T-G-C--T-A-G-A-T-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-AAT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-CA-G-G-G-A----G---C-----A-AG----G-C-T-C-T-T-T-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3715(name, align); +seqs.push_back(newSeq3715); +name = "GQY1XT001AVXBJ"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3716(name, align); +seqs.push_back(newSeq3716); +name = "GQY1XT001AVBP5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CT-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-T-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3717(name, align); +seqs.push_back(newSeq3717); +name = "GQY1XT001ATUZ8"; +align = "T-T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3718(name, align); +seqs.push_back(newSeq3718); +name = "GQY1XT001ASWQS"; +align = "C-G--T-T--GA-A-A-C-T-G-G--TT-T-T-C--T-T-G-A-G-T-G-A-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3719(name, align); +seqs.push_back(newSeq3719); +name = "GQY1XT001ASFQE"; +align = "A-T--T-T--GA-A-A-C-T-G-T--CC-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACA-CTG-A-GG--T-A-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--CA-C-T-A-G-GT-G-T-C--G-G-G-G----T---C----GC-AA----G-A---C-T-T-C-G-G-T-G-C-C--GT--A-G-T-T-AA-C-G-C-A-T-TAA-G-TGC-TCC-GCC-T-G-GGG-AG-TA--CG-CA-C-G-C-A-AGTGTGAA"; +Sequence newSeq3720(name, align); +seqs.push_back(newSeq3720); +name = "GQY1XT001AROO8"; +align = "A-G--T-T--GA-A-A-C-T-G-G--CA-G-T-C--T-T-G-A-G-T-A-C-AG-TA-G-A-G-G-T-G--GG-C-GG-A-ATG-C-G-C-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-TCCG-G-GCC-G------------ATT-GAGG--------C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3721(name, align); +seqs.push_back(newSeq3721); +name = "GQY1XT001AR18V"; +align = "A-T--T-G--GA-A-A-C-T-A-C--CG-A-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-GC-TT-T-T-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-G-G-G--T---C----TG-A-----C-C-C-C-C-T-C-C-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3722(name, align); +seqs.push_back(newSeq3722); +name = "GQY1XT001AQZ6X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--C-G-G-G-G--G-------GAA-TGG-----C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-CCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3723(name, align); +seqs.push_back(newSeq3723); +name = "GQY1XT001AQG1X"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-G-C--C-------GAT-TGA-----G-G-C-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3724(name, align); +seqs.push_back(newSeq3724); +name = "GQY1XT001AQ3PI"; +align = "A----T-T--GA-A-A-C-T---G--TT-T-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TC-AA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-TGC-ACC-T-G-GGG-AG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3725(name, align); +seqs.push_back(newSeq3725); +name = "GQY1XT001APGKI"; +align = "C-G--T-T--GA-A-A-C-T-G-G---T-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3726(name, align); +seqs.push_back(newSeq3726); +name = "GQY1XT001APD07"; +align = "C-T--C-T--GA-T-A-C-T-G-T--CG-G-G-C--T-A-G-A-G-T-T-T-AG-TT-G-C-G-G-T-A--GG-C-GG-A-ATG-T-A-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--G-------GAT-TGA-----C-C-C-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3727(name, align); +seqs.push_back(newSeq3727); +name = "GQY1XT001AORNO"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CT-TC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-G--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AG--CG-C-T-A-G-GT-G-T-C--CGGGG-G-G--A--------AT-GG------C-C-C-C-T-G-G-G-T-G-C-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CGC-TCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGCTGAA"; +Sequence newSeq3728(name, align); +seqs.push_back(newSeq3728); +name = "GQY1XT001AOHJF"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3729(name, align); +seqs.push_back(newSeq3729); +name = "GQY1XT001AO5IX"; +align = "C-A--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-AA-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGAG----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3730(name, align); +seqs.push_back(newSeq3730); +name = "GQY1XT001AL3RI"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-A-G-A--A--T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-C-G-G-A--GT--C----AA-G-----G-C-T-C-T-G-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3731(name, align); +seqs.push_back(newSeq3731); +name = "GQY1XT001AITUY"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3732(name, align); +seqs.push_back(newSeq3732); +name = "GQY1XT001AI920"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3733(name, align); +seqs.push_back(newSeq3733); +name = "GQY1XT001AGWON"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3734(name, align); +seqs.push_back(newSeq3734); +name = "GQY1XT001AGBP8"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-T-C-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3735(name, align); +seqs.push_back(newSeq3735); +name = "GQY1XT001AG5KZ"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-T-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-AG-CGG-C-TC-T--CTGG-TC-TG-T-A-ACT--GACG-CTG-A-GG--T-T-CG-AAA-G-C-G-TGGG-T--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-CAT-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3736(name, align); +seqs.push_back(newSeq3736); +name = "GQY1XT001AFXW2"; +align = "C-G--T-T--GA-A-A-C-T-G-A--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-A-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3737(name, align); +seqs.push_back(newSeq3737); +name = "GQY1XT001AFWUA"; +align = "A-T--T-G--GA-A-A-C-T-G-T--TG-A-T-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-T--G-G-G-T-G--C---C----AA-A-----G-G-C-T-C-C-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3738(name, align); +seqs.push_back(newSeq3738); +name = "GQY1XT001AFWRO"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-G-GT-G-T-T--G-G-A-G-G--G---T----TT-CC----G-C-C-C-T-T-C-A-G-T-G-C-C--GG--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3739(name, align); +seqs.push_back(newSeq3739); +name = "GQY1XT001AFJA5"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGG-----G-G-G-C-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3740(name, align); +seqs.push_back(newSeq3740); +name = "GQY1XT001AF6GW"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3741(name, align); +seqs.push_back(newSeq3741); +name = "GQY1XT001AEZWU"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-T-G-G--A---C----AA-A-----G-T-C-C-A-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3742(name, align); +seqs.push_back(newSeq3742); +name = "GQY1XT001AE8EJ"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GC-G-G-C--T-A-G-A-G-T-A-C-TG-GA-G-G-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-C-A-ACT--GACG-TTG-A-GG--C-T-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GTGG-T-C--G-G-G-G-G--G---C----TAGA-----G-C-C-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3743(name, align); +seqs.push_back(newSeq3743); +name = "GQY1XT001A9YE5"; +align = "A-T--T-T--GA-A-A-C-T-G-T--TG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GA-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-T-CT-G--CTGG-AC-AG-C-A-ACT--GACG-GTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-G--C-G-G-G-G----------ACT-GA-CC-----C-C-C-T-G-C-G-T-G-C-C--GC--A-G-C-T-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGGAGG-TA--CG-AT-C-G-C-A-AGGTTGAA"; +Sequence newSeq3744(name, align); +seqs.push_back(newSeq3744); +name = "GQY1XT001A9V0Q"; +align = "C-G--T-T--GA-A-A-C-T-G-C--CG-G-G-C--T-C-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAG-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-G-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3745(name, align); +seqs.push_back(newSeq3745); +name = "GQY1XT001A9NV7"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--CGA------GT-GA------G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3746(name, align); +seqs.push_back(newSeq3746); +name = "GQY1XT001A9KQV"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-G-G-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3747(name, align); +seqs.push_back(newSeq3747); +name = "GQY1XT001A9HKL"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGG-G-----G-C-C-T-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3748(name, align); +seqs.push_back(newSeq3748); +name = "GQY1XT001A9GYE"; +align = "T-T--T-G--GA-A-A-C-T-G-T--GG-A-G-C--T-A-G-A-G-T-G-C-TG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-GAG-G--T---T----TC-C-----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3749(name, align); +seqs.push_back(newSeq3749); +name = "GQY1XT001A95PC"; +align = "A-T--T-G--GA-A-A-C-T-A-C--CG-A-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-C-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3750(name, align); +seqs.push_back(newSeq3750); +name = "GQY1XT001A94I0"; +align = "A-T--T-G--GA-A-A-C-T-A-C--CG-A-A-C--T-A-G-A-G-T-G-T-CG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-GA-T-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-GA-AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G----G---C----AT-T-----G-C-C-C-T-T-C-G-G-T-G-C-CG-GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3751(name, align); +seqs.push_back(newSeq3751); +name = "GQY1XT001A90S8"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CA-G-A-C--T-T-G-A-G-T-T-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3752(name, align); +seqs.push_back(newSeq3752); +name = "GQY1XT001A8Y6H"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T---G-GC-GA-G-A-A-G-A-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-T--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3753(name, align); +seqs.push_back(newSeq3753); +name = "GQY1XT001A8OUN"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-C-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3754(name, align); +seqs.push_back(newSeq3754); +name = "GQY1XT001A8KPL"; +align = "C-G----T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-CT-A--CCGG-CG-CG-C-A-ACT--GACG-CTC-A-TG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--CA-C-T-A-A-CT-G-T-C--C-G-G-C-C--C-------GAT-TGA-----G-G-G-T-T-G-G-G-T-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGGAGG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3755(name, align); +seqs.push_back(newSeq3755); +name = "GQY1XT001A8DH1"; +align = "C-A--C-T--GA-T-A-C-T-G-T--TA-G-A-C--T-T-G-A-G-T-A-T-GG-AA-G-A-G-G-A-G--AA-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-G-ACT--GGCG-TTG-A-GG--C-C-CG-AAG-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AC--TG-C-T-A-G-GT-G-T-C--G-G-G-G-G---------GCAG-GG-GC-----C-C-C-C-C-G-G-T-G-C-C--GG--A-G-C-A-AA-C-G-C-A-T-TAA-G-CAG-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3756(name, align); +seqs.push_back(newSeq3756); +name = "GQY1XT001A8158"; +align = "CAT--T-T--GA-A-A-C-T-G-G--CG-A-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TA-C-T-A-A-TT-G-T-G--T-G-C-C-C--C-------GAG-TGA-----G-G-G-G-T-G-C-G-T-G-A-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3757(name, align); +seqs.push_back(newSeq3757); +name = "GQY1XT001A7T0D"; +align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-C--G-G-T-G-G--G---C----AA-A-----G-C-C-C-A-T-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-A-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3758(name, align); +seqs.push_back(newSeq3758); +name = "GQY1XT001A7OHV"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AG-A-TC-A-T-A-CA-G-A-AC-A-CC-GA-T-T-GC-GAA-GG-CAG-C-TT-A--CCAA-AC-TA-C-G-ACT--GACG-TTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G---G----------GCT-TCG-----G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3759(name, align); +seqs.push_back(newSeq3759); +name = "GQY1XT001A5XPP"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-T-A--AG-T-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-G--G---C---AGA-G-----G-C-C-C-T-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-A-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TC-C-G-C-A-AGGATGAA"; +Sequence newSeq3760(name, align); +seqs.push_back(newSeq3760); +name = "GQY1XT001A59EZ"; +align = "A-T--T-G--GA-A-A-C-T-G-G--TT-G-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-G-A--AG-T-GG-A-ATT-C-C-A-T-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AG-A-TA-T-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-C--CTGG-TC-TG-C-A-ACT--GACA-CTG-A-GG--C-G-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCC-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-G-G-----------TC-GA--------A-C-C-T-C-AGG-T-G-C-T--GA--A-G-T-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGGAGG-TA--CG-GT-C-G-C-A-AGACTGAA"; +Sequence newSeq3761(name, align); +seqs.push_back(newSeq3761); +name = "GQY1XT001A520K"; +align = "A-T--C-A--GA-A-A-C-T-G-T--TG-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-G--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TC-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3762(name, align); +seqs.push_back(newSeq3762); +name = "GQY1XT001A4ZOC"; +align = "T-T--T-G--GA-A-A-C-T-T-T--TT-T-G-C--T-G-G-A-G-T-A-C-CG-GA-G-A-G-G-T-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-A--CTGG-AC-CG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-C--G-G-G-G-AC-C---C----AA-G-----G-G-T-C-T-C-C-G-G-T-G-C-C--GC--C-G-C-A-AA-C-G-C-A-T-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3763(name, align); +seqs.push_back(newSeq3763); +name = "GQY1XT001A3GEM"; +align = "T-T--T-G--GA-A-A-C-T-G-T--AT-A-G-C--T-T-G-A-G-T-A-C-TG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TC-A--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CTG-T-AAAC-G-A-TG-AA--TA-C-T-A-G-GT-G-T-C--G-G-G-G-GC-T---C----AC-G-----G-G-C-G-C-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; +Sequence newSeq3764(name, align); +seqs.push_back(newSeq3764); +name = "GQY1XT001A37AB"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-G-C-C--T-C-G-A-G-T-G---GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-G-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-G-G--C--------TT-CG------G-C-T-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-TGT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3765(name, align); +seqs.push_back(newSeq3765); +name = "GQY1XT001A2HWT"; +align = "A-A--C-C--AA-A-A-C-T-G-T--AG-A-T-C--T-T-G-A-G-T-A-C-TG-GA-G-G-G-G-A-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-GG-T-G-GC-GAA-GG-CGG-C-TT-T--CTGG-AC-AG-A-A-ACT--GACA-TTG-A-GG--C-A-CG-AAA-G-T-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-A-CCG-T-AAAC-G-A-TG-GA--TA-C-T-A-G-GT-G-T-A--G-G-T-G-A--T-------GAT-AA------G-T-C-A-T-C-T-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-A-TAA-G-TAT-CCC-ACC-T-G-GGG-AG-TA--CG-GC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3766(name, align); +seqs.push_back(newSeq3766); +name = "GQY1XT001A16SX"; +align = "C-G--T-T--GA-A-A-C-T-G-G--GA-G-C-C--T-T-G-A-G-T-G-C-GC-GA-G-A-A-G-T-A--GG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-T-G-CGGG-G--ATC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CG-C-A-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3767(name, align); +seqs.push_back(newSeq3767); +name = "GQY1XT001A13OH"; +align = "..T--T-G--GA-A-A-C-T-G-C--CT-G-A-C--T-G-G-A-G-T-G-C-TG-GA-G-A-G-G-C-A--AG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TT-G--CTGG-AC-AG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CGG-T-AAAC-G-A-TG-AA--TG-C-T-A-G-GT-G-T-T--G-G-G-G-A--G---C----AA-A-----G-C-T-C-T-T-C-G-G-T-G-C-C--GT--C-G-C-A-AA-C-G-C-A-G-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C--AAGAATGAA"; +Sequence newSeq3768(name, align); +seqs.push_back(newSeq3768); +name = "GQY1XT001A0VZD"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-G--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-T--C-------TA--CG------G-A-A-C-T-G-G-G-T-G-G-C--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACC-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3769(name, align); +seqs.push_back(newSeq3769); +name = "GQY1XT001A0L0R"; +align = "C-G--T-T--GA-A-A-C-T-G-G--CG-T-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-T-ACT--GACG-CTG-A-GG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-GCAAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAG-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-GTTAT-TCC-ACCGT-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3770(name, align); +seqs.push_back(newSeq3770); +name = "GQY1XT001A0BQS"; +align = "C-G--T-T--GA-A-A-C-T-G-A--TT-G-T-C--T-T-G-A-G-T-G-G-GC-GA-G-A-A-G-T-A--TG-C-GG-A-ATG-C-G-T-G-GT-GT-A-G-CGGT-G-AAA--TG-C-AT-AG--AT-A-TC-A-C-G-CA-G-A-AC-T-CC-GA-T-T-GC-GAA-GG-CAG-C-AT-A--CCGG-CG-CC-C-A-ACT--GACG-CTG-A-AG--C-A-CG-AAA-G-C-G-TGGG-T--ATC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CAG-T-AAAC-G-A-TG-AA--TG-C-T-A-A-CT-G-T-C--C-G-G-T-G--C-------GAA-TGA-----G-C-G-C-T-G-G-G-C-G-G-T--AC--A-G-C-G-AA-A-G-C-G-T-TAA-G-CAT-TCC-ACT-T-G-GGG-AG-TA--CG-CC-G-G-C-A-ACGGTGAA"; +Sequence newSeq3771(name, align); +seqs.push_back(newSeq3771); +name = "GQY1XT001A035O"; +align = "A-T--C-G--GA-A-A-C-C-G-G--GC-A-A-C--T-T-G-A-G-T-G-C-AG-AA-G-A-G-G-A-C--AG-T-GG-A-ACT-C-C-A-T-GT-GT-A-G-CGGT-G-GAA--TG-C-GT-AG--AT-A-TA-T-G-G-AA-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-TG-T--CTGG-TC-TG-C-A-ACT--GACG-CTG-A-GG--C-T-CG-AAA-G-C-A-TGGG-T--AGC-G-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-T-G-CCG-T-AAAC-G-A-TG-AG--TG-C-T-A-A-GT-G-T-T--G-G-G-A-G--G---T----TT-CC----G-C-C-T-C-T-C-A-G-T-G-C-T--GC--A-G-C-T-AA-C-G-C-A-T-TAA-G-CAC-TCC-GCC-T-G-GGG-AG-TA--CG-AC-C-G-C-A-AGGTTGAA"; +Sequence newSeq3772(name, align); +seqs.push_back(newSeq3772); + +} +/***********************************************************************/ +void TestDataSet::fillNames() { + + string firstCol, secondCol; + +firstCol = "GQY1XT001CFHYQ"; +secondCol = "GQY1XT001CFHYQ,GQY1XT001DRJDY,GQY1XT001C3A2J,GQY1XT001DEYDV,GQY1XT001EZ4JO,GQY1XT001DIL8H,GQY1XT001A83DS,GQY1XT001CO1ML,GQY1XT001DQW61,GQY1XT001EEDFD,GQY1XT001C5ZI6,GQY1XT001CGKF0,GQY1XT001DO7YT,GQY1XT001B8K3E,GQY1XT001EJVHJ,GQY1XT001DSN1K,GQY1XT001AP08Q,GQY1XT001EHYGA,GQY1XT001AF7BM,GQY1XT001BGW8L,GQY1XT001CXTQO,GQY1XT001AGRA9,GQY1XT001ASGLE,GQY1XT001AUSFZ,GQY1XT001BGZSZ,GQY1XT001EH69S,GQY1XT001BS91K,GQY1XT001BJZDW,GQY1XT001DKBTZ,GQY1XT001BOOLK,GQY1XT001B15BC,GQY1XT001DLQVS,GQY1XT001A9RO9,GQY1XT001DT1QQ,GQY1XT001CC46N,GQY1XT001DP72E,GQY1XT001ANASK,GQY1XT001BYO10,GQY1XT001BQEQD,GQY1XT001A2BGG,GQY1XT001A65TT,GQY1XT001DK3BM,GQY1XT001D6UBC,GQY1XT001ARRIR,GQY1XT001EG261,GQY1XT001CZ6HE,GQY1XT001DIGR4,GQY1XT001EA8QG,GQY1XT001AQH61,GQY1XT001CS575,GQY1XT001D5R6R,GQY1XT001AXQ7F,GQY1XT001CA6UW,GQY1XT001BG6EV,GQY1XT001BWAHW,GQY1XT001AW195,GQY1XT001C4A9O,GQY1XT001DWPA5,GQY1XT001BYT6N,GQY1XT001A8N9Z,GQY1XT001EZLAT,GQY1XT001AYNAG,GQY1XT001AQ2EG,GQY1XT001CRW75,GQY1XT001BO082,GQY1XT001EJJC9,GQY1XT001CXDB5,GQY1XT001DALQC,GQY1XT001C0Z7H,GQY1XT001EBO08,GQY1XT001BYMID,GQY1XT001BLI9P,GQY1XT001BU631,GQY1XT001DF4TT,GQY1XT001CEI6G,GQY1XT001EZN7M,GQY1XT001AUY7O,GQY1XT001BAHWF,GQY1XT001BJ7OY,GQY1XT001DKQWX,GQY1XT001DC2N6,GQY1XT001D0855,GQY1XT001D6T35,GQY1XT001DUKJG,GQY1XT001D91AN,GQY1XT001CW7B1,GQY1XT001AKJ77,GQY1XT001AR46M,GQY1XT001DRWHB,GQY1XT001A4NO5,GQY1XT001EX662,GQY1XT001CJRPW,GQY1XT001DV9SP,GQY1XT001CBOK8,GQY1XT001A0XQE,GQY1XT001DZLL0,GQY1XT001C8Q34,GQY1XT001AGPJM,GQY1XT001ECHXW,GQY1XT001C2BRM,GQY1XT001D9OGY,GQY1XT001D1C48,GQY1XT001EU4ZH,GQY1XT001C1U0Q,GQY1XT001D22P2,GQY1XT001A1VU3,GQY1XT001D25WM,GQY1XT001A3DK5,GQY1XT001ET8ZS,GQY1XT001D8KXS,GQY1XT001DRQY6,GQY1XT001A1HJI,GQY1XT001E2DFO,GQY1XT001DPMNT,GQY1XT001AL3T0,GQY1XT001EQJRN,GQY1XT001DY7VD,GQY1XT001AE459,GQY1XT001BRC5H,GQY1XT001A1R2H,GQY1XT001C62TQ,GQY1XT001CPXIY,GQY1XT001AO43U,GQY1XT001EV6UC,GQY1XT001AINGZ,GQY1XT001DRP5E,GQY1XT001AUR6N,GQY1XT001BLP2R,GQY1XT001AYJJH,GQY1XT001C29TW,GQY1XT001BS3S5,GQY1XT001C9L7X,GQY1XT001EJ1BB,GQY1XT001EFR4D,GQY1XT001DENM4,GQY1XT001EIHZJ,GQY1XT001D2O2B,GQY1XT001CUUAH,GQY1XT001BQ3XT,GQY1XT001CWQBW,GQY1XT001AJE69,GQY1XT001DZO0V,GQY1XT001DAEZH,GQY1XT001A2UA8,GQY1XT001CEE7H,GQY1XT001D3E44,GQY1XT001B4NLF,GQY1XT001C2VQS,GQY1XT001DDCQV,GQY1XT001B4INS,GQY1XT001EO4SR,GQY1XT001DH6OK,GQY1XT001CGU5M,GQY1XT001AMUHG,GQY1XT001APXGP,GQY1XT001DO6X5,GQY1XT001DMMAF,GQY1XT001EPDV1,GQY1XT001AFEEM,GQY1XT001B68HR,GQY1XT001COPUW,GQY1XT001AK199,GQY1XT001A0EJ5,GQY1XT001D1WV9,GQY1XT001BNMIW,GQY1XT001BJX8B,GQY1XT001BVTQN,GQY1XT001BG3UI,GQY1XT001DAEMO,GQY1XT001A3B14,GQY1XT001CTRK4,GQY1XT001C0G79,GQY1XT001AQI5Z,GQY1XT001BTB96,GQY1XT001C17I8,GQY1XT001D0YXT,GQY1XT001CJLAE,GQY1XT001CQA08,GQY1XT001B8ZW3,GQY1XT001EFEUX,GQY1XT001AR862,GQY1XT001DS9J8,GQY1XT001DM6NI,GQY1XT001CYQR8,GQY1XT001D0922,GQY1XT001ALY73,GQY1XT001EG5KK,GQY1XT001CVTNM,GQY1XT001DWQZZ,GQY1XT001BKBA4,GQY1XT001B2LFN,GQY1XT001CMXSB,GQY1XT001A3A0P,GQY1XT001EF99D,GQY1XT001CA16T,GQY1XT001D0I0X,GQY1XT001BWA2A,GQY1XT001ELYEL,GQY1XT001C4X6J,GQY1XT001AM94F,GQY1XT001B5HY3,GQY1XT001EDY0Z,GQY1XT001AULPS,GQY1XT001CBP6S,GQY1XT001D614O,GQY1XT001B8HGB,GQY1XT001DXEM6,GQY1XT001DUNFZ,GQY1XT001C3UKM,GQY1XT001BDEYK,GQY1XT001AXQTJ,GQY1XT001C78A5,GQY1XT001CNWSY,GQY1XT001BTCV7,GQY1XT001A845P,GQY1XT001AY763,GQY1XT001CBDXH,GQY1XT001DL5K3,GQY1XT001DFEJU,GQY1XT001C2E03,GQY1XT001DNCC6,GQY1XT001CQ35N,GQY1XT001CYKLW,GQY1XT001AMJX7,GQY1XT001C4PLR,GQY1XT001DLGOB,GQY1XT001A9RC7,GQY1XT001DZXZS,GQY1XT001BIOKR,GQY1XT001AEY4J,GQY1XT001CEUEQ,GQY1XT001DL80R,GQY1XT001A82MN,GQY1XT001CHBV8,GQY1XT001EIQAE,GQY1XT001DHLHQ,GQY1XT001D6BJU,GQY1XT001ER84T,GQY1XT001BVB8X,GQY1XT001C0PKQ,GQY1XT001B71T8,GQY1XT001D89D8,GQY1XT001ERLG3,GQY1XT001DA7DK,GQY1XT001EI6Z3,GQY1XT001CN3DQ,GQY1XT001E0UI0,GQY1XT001DRQTP,GQY1XT001EDWMY,GQY1XT001AJREO,GQY1XT001DCX6O,GQY1XT001CVNI4,GQY1XT001CQJUH,GQY1XT001DT7WL,GQY1XT001EOVW8,GQY1XT001D4TBS,GQY1XT001CACOC,GQY1XT001B614P,GQY1XT001CSGV5,GQY1XT001ER03G,GQY1XT001CVOU6,GQY1XT001B7LHF,GQY1XT001EIOGO,GQY1XT001CBKLT,GQY1XT001BJE0H,GQY1XT001BPZAG,GQY1XT001CE2WG,GQY1XT001CS3RS,GQY1XT001BHSZG,GQY1XT001CK5D8,GQY1XT001B8VF1,GQY1XT001BEZYC,GQY1XT001A1RP5,GQY1XT001D4S2G,GQY1XT001ECE52,GQY1XT001CP4R6,GQY1XT001EW6L2,GQY1XT001EOBIL,GQY1XT001AO545,GQY1XT001EWKXS,GQY1XT001C3O80,GQY1XT001ENOXY,GQY1XT001EPVTP,GQY1XT001BDDE9,GQY1XT001DWDCA,GQY1XT001A6FQC,GQY1XT001CMU9V,GQY1XT001BUWWF,GQY1XT001C34BY,GQY1XT001AJ7MY,GQY1XT001BSMN0,GQY1XT001AY5ZQ,GQY1XT001BFYDO,GQY1XT001DYHO3,GQY1XT001DF8RJ,GQY1XT001EM79O,GQY1XT001DA8FP,GQY1XT001DW1BW,GQY1XT001CTJ8D,GQY1XT001CSRLF,GQY1XT001BP39F,GQY1XT001CWZMC,GQY1XT001B2W45,GQY1XT001AKBMG,GQY1XT001EKD1F,GQY1XT001DZQCI,GQY1XT001DQY72,GQY1XT001DOZUS,GQY1XT001DIVL5,GQY1XT001D6IPP,GQY1XT001CYMGI,GQY1XT001CN5OS,GQY1XT001CGL3T,GQY1XT001CCAQ6,GQY1XT001C9USJ,GQY1XT001C8C3Z,GQY1XT001C4P61,GQY1XT001C2ETE,GQY1XT001BWS5C,GQY1XT001BM68C,GQY1XT001BKE1Q,GQY1XT001BEFK1,GQY1XT001AU545,GQY1XT001AJ8MJ,GQY1XT001A4BUB,GQY1XT001CP4ZB,GQY1XT001ASRAL,GQY1XT001CSZBF,GQY1XT001DWJMZ,GQY1XT001D2T4D,GQY1XT001BXY7E,GQY1XT001D7XT7,GQY1XT001DYD1N,GQY1XT001ECNU3,GQY1XT001BCNYN,GQY1XT001DLIK5,GQY1XT001CULDN,GQY1XT001EJT8P,GQY1XT001A0C5B,GQY1XT001DIPYP,GQY1XT001EG24Z,GQY1XT001AWNYO,GQY1XT001AEKHJ,GQY1XT001BL7NK,GQY1XT001AW1IZ,GQY1XT001DTX34,GQY1XT001E2KD6,GQY1XT001B9CAP,GQY1XT001EQLRM,GQY1XT001AS55W,GQY1XT001BG9BO,GQY1XT001ELHQ8,GQY1XT001EFB9R,GQY1XT001AR8B5,GQY1XT001CJ2VH,GQY1XT001E0TFD,GQY1XT001CSVPN,GQY1XT001EQ1AL,GQY1XT001BW8S1,GQY1XT001BTXBG,GQY1XT001BCKXA,GQY1XT001E099E,GQY1XT001CPNRF,GQY1XT001BTWY4,GQY1XT001AVJSS,GQY1XT001D62YG,GQY1XT001CCTZZ,GQY1XT001D9L9Q,GQY1XT001BMLVZ,GQY1XT001DSO1H,GQY1XT001CWLYV,GQY1XT001E1IR2,GQY1XT001APOUQ,GQY1XT001ELI7V,GQY1XT001B04PB,GQY1XT001EBEV8,GQY1XT001BTFIK,GQY1XT001B96TP,GQY1XT001EFRLC,GQY1XT001A5OVI,GQY1XT001CBYBY,GQY1XT001AF2IY,GQY1XT001BRI4K,GQY1XT001CPX3T,GQY1XT001DRCI3,GQY1XT001BVIQD,GQY1XT001B2VZ8,GQY1XT001D5PZ5,GQY1XT001ALHFM,GQY1XT001EW9O5,GQY1XT001CRNTC,GQY1XT001DW7SL,GQY1XT001EL1UE,GQY1XT001B3VAW,GQY1XT001DP2AI,GQY1XT001DSKOB,GQY1XT001CLW66,GQY1XT001EPHUW,GQY1XT001CCYLC,GQY1XT001CB1TX,GQY1XT001DX5KH,GQY1XT001B40HY,GQY1XT001AKRNL,GQY1XT001DZLIR,GQY1XT001EV4XX,GQY1XT001BVCF7,GQY1XT001C3JT9,GQY1XT001BUZV7,GQY1XT001D6FYT,GQY1XT001CUMSG,GQY1XT001D9EUW,GQY1XT001ETPSC,GQY1XT001A7GT1,GQY1XT001ANX9O,GQY1XT001ECOJC,GQY1XT001DX58Z,GQY1XT001ATZGK,GQY1XT001A6V48,GQY1XT001B7O9V,GQY1XT001DP3AJ,GQY1XT001AHMT8,GQY1XT001B8VKE,GQY1XT001A1MDQ,GQY1XT001CBO7K,GQY1XT001C91V2,GQY1XT001CUPK5,GQY1XT001CU83I,GQY1XT001CRYTQ,GQY1XT001EN7RX,GQY1XT001BDEVP,GQY1XT001ENKP2,GQY1XT001A855R,GQY1XT001CS2HY,GQY1XT001CZKB9,GQY1XT001DGPMZ,GQY1XT001ANZO4,GQY1XT001A4WM1,GQY1XT001DOSAG,GQY1XT001CA0NT,GQY1XT001BX5CV,GQY1XT001BEVV5,GQY1XT001DMOHH,GQY1XT001CXHBF,GQY1XT001EMYHZ,GQY1XT001DAZD4,GQY1XT001EIPTX,GQY1XT001APWW0,GQY1XT001DZKYE,GQY1XT001A9VIZ,GQY1XT001COLVB,GQY1XT001EIVZH,GQY1XT001C622P,GQY1XT001BIYO1,GQY1XT001E2TJT,GQY1XT001C7Y5L,GQY1XT001BLMZM,GQY1XT001CYM8A,GQY1XT001AJLHB,GQY1XT001BM6IE,GQY1XT001DRQOA,GQY1XT001AKVZQ,GQY1XT001AOPNE,GQY1XT001BQVZA,GQY1XT001B6S47,GQY1XT001BS7BM,GQY1XT001DODHB,GQY1XT001DQR5C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C44N8"; +secondCol = 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XT001CFX8U,GQY1XT001AURQV,GQY1XT001CA7N7,GQY1XT001CW8N8,GQY1XT001B2AXQ,GQY1XT001BBL5T,GQY1XT001EOXMA,GQY1XT001CDQAE,GQY1XT001D32A3,GQY1XT001BTYIT,GQY1XT001AWHXA,GQY1XT001BJ7QX,GQY1XT001EKTXL,GQY1XT001AJ8C7,GQY1XT001DIFST,GQY1XT001C52AN,GQY1XT001BOZMS,GQY1XT001AP4IJ,GQY1XT001EEV44,GQY1XT001CTJEV,GQY1XT001B15FO,GQY1XT001CMRD2,GQY1XT001EZ7Y2,GQY1XT001CPCIM,GQY1XT001BDCQ3,GQY1XT001BQ1D6,GQY1XT001DS9ZP,GQY1XT001A33CK,GQY1XT001C2N9M,GQY1XT001BK2Z4,GQY1XT001DMCWA,GQY1XT001AZ7J2,GQY1XT001BHRXZ,GQY1XT001B4IXO,GQY1XT001DKFXE,GQY1XT001CMUF7,GQY1XT001BEILN,GQY1XT001BX15M,GQY1XT001DXHJC,GQY1XT001BO2CK,GQY1XT001ES9TD,GQY1XT001BYBKA,GQY1XT001DLQEU,GQY1XT001DMYMW,GQY1XT001EUB0I,GQY1XT001AKE78,GQY1XT001DPS7J,GQY1XT001BI8MJ,GQY1XT001CEX0M,GQY1XT001BZ5VB,GQY1XT001BNUHF,GQY1XT001C333P,GQY1XT001A5UP9,GQY1XT001BFM17,GQY1XT001DMLX1,GQY1XT001EOO8Z,GQY1XT001CT4Z9,GQY1XT001A9I4L,GQY1XT001E3VB0,GQY1XT001EBXDG,GQY1XT001BH9CJ,GQY1XT001CZM25,GQY1XT001CHTGZ,GQY1XT001EOHBH,GQY1XT001BBFFV,GQY1XT001C3R4G,GQY1XT001A2HLD,GQY1XT001AHIAB,GQY1XT001AW2JE,GQY1XT001BXNI1,GQY1XT001DRIW9,GQY1XT001A9VXM,GQY1XT001EKX7H,GQY1XT001BXTB0,GQY1XT001AOABX,GQY1XT001BRUTA,GQY1XT001BDH1X,GQY1XT001DJPEI,GQY1XT001B6V6O,GQY1XT001BCAAV,GQY1XT001CUSOS,GQY1XT001AEATQ,GQY1XT001CEM95,GQY1XT001EHLKB,GQY1XT001EIPGE,GQY1XT001DG4AE,GQY1XT001BF4T0,GQY1XT001BALPK,GQY1XT001A9EDY,GQY1XT001A6NOJ,GQY1XT001ATZAN,GQY1XT001DMRQE,GQY1XT001BM48F,GQY1XT001BKGDN,GQY1XT001DBWUM,GQY1XT001DSKKO,GQY1XT001AIV6S,GQY1XT001CEW50,GQY1XT001BKUIM,GQY1XT001B7LSO,GQY1XT001AL99C,GQY1XT001ENVWU,GQY1XT001EPA2F,GQY1XT001BJ0ZE,GQY1XT001ERSXV,GQY1XT001BELEM,GQY1XT001C8YLJ,GQY1XT001A0ZO6,GQY1XT001A6L33,GQY1XT001CJXMT,GQY1XT001DELXG,GQY1XT001DF83Q,GQY1XT001AQXHG,GQY1XT001EHIMQ,GQY1XT001DQSHZ,GQY1XT001EFJYD,GQY1XT001D0JOT,GQY1XT001DC4O8,GQY1XT001ERMJU,GQY1XT001CTJJR,GQY1XT001DXTB8,GQY1XT001BGQF3,GQY1XT001BNYDY,GQY1XT001ALD3Y,GQY1XT001D9CSK,GQY1XT001CBCSE,GQY1XT001CNAPS,GQY1XT001CX63L,GQY1XT001A3JWP,GQY1XT001BUE4A,GQY1XT001C6HY1,GQY1XT001DTPLU,GQY1XT001B287Q,GQY1XT001CQOLS,GQY1XT001EXPWV,GQY1XT001BU7L8,GQY1XT001DWCJX,GQY1XT001DHRXE,GQY1XT001A7OL7,GQY1XT001AVRS9,GQY1XT001EVCGT,GQY1XT001AZ6VT,GQY1XT001D9IZA,GQY1XT001DMVU4,GQY1XT001CGGUO,GQY1XT001B1RPP,GQY1XT001CTEXJ,GQY1XT001A4CCI,GQY1XT001BBFJ8,GQY1XT001DDVP0,GQY1XT001DG0Q5,GQY1XT001CZJHE,GQY1XT001B00RZ,GQY1XT001BWO0U,GQY1XT001A6LBB,GQY1XT001EUD65,GQY1XT001C9BCR,GQY1XT001C24DP,GQY1XT001CG3J3,GQY1XT001EAJBF,GQY1XT001DNRGF,GQY1XT001A3XY6,GQY1XT001C6UBI,GQY1XT001BRFU1,GQY1XT001DQK8P,GQY1XT001A84RD,GQY1XT001D2CMH,GQY1XT001CWVOO,GQY1XT001AHF1D,GQY1XT001C94VI,GQY1XT001EMU3M,GQY1XT001B1N7Y,GQY1XT001DNVF2,GQY1XT001E2GG0,GQY1XT001DECT2,GQY1XT001EGOVC,GQY1XT001BKDC2,GQY1XT001EMU6V,GQY1XT001DQCON,GQY1XT001DG6FH,GQY1XT001A0D1Z,GQY1XT001AS9YR,GQY1XT001B67JX,GQY1XT001COAOV,GQY1XT001EI3VQ,GQY1XT001DMXDT,GQY1XT001AQZ8K,GQY1XT001C24A4,GQY1XT001DQM3I,GQY1XT001AZL0H,GQY1XT001D8C8P,GQY1XT001C0U0E,GQY1XT001CQGWE,GQY1XT001EUW0M,GQY1XT001B0RIB,GQY1XT001EEJRG,GQY1XT001DZCP6,GQY1XT001ESZNA,GQY1XT001DXWXW,GQY1XT001BUO9L,GQY1XT001BXMM1,GQY1XT001A6QIC,GQY1XT001EJDZ7,GQY1XT001E0GP9,GQY1XT001ERX0Z,GQY1XT001ALMKZ,GQY1XT001DTKIC,GQY1XT001ANMUS,GQY1XT001CVH4M,GQY1XT001BKQ3F,GQY1XT001B6KZW,GQY1XT001ATL2L,GQY1XT001ESE7B,GQY1XT001AOI2C,GQY1XT001DLGSO,GQY1XT001BN3G7,GQY1XT001D4PA4,GQY1XT001A5VX7,GQY1XT001CYSQO,GQY1XT001EO78E,GQY1XT001A9ZCT,GQY1XT001BMVJS,GQY1XT001CJAAS,GQY1XT001C6QH2,GQY1XT001A7U3A,GQY1XT001CSIAK,GQY1XT001BX7CJ,GQY1XT001EC42F,GQY1XT001DRCUB,GQY1XT001A3AIB,GQY1XT001CJQ0M,GQY1XT001BIDI1,GQY1XT001D5YWA,GQY1XT001EEBGE,GQY1XT001DO7N7,GQY1XT001A1ZMP,GQY1XT001CC0M1,GQY1XT001DTJGA,GQY1XT001DHCK2,GQY1XT001EJ96B,GQY1XT001BYX22,GQY1XT001E3FRC,GQY1XT001AHS7Y,GQY1XT001E06HG,GQY1XT001EG74D,GQY1XT001CCICD,GQY1XT001DAIB0,GQY1XT001CDI6O,GQY1XT001AN8UY,GQY1XT001DYFPE,GQY1XT001BHLW8,GQY1XT001D28I4,GQY1XT001DJYOU,GQY1XT001CHN6M,GQY1XT001BQ3YG,GQY1XT001DW42I,GQY1XT001D7AVT,GQY1XT001ECRSN,GQY1XT001C6TU0,GQY1XT001CG6II,GQY1XT001ANTCF,GQY1XT001EEJTD,GQY1XT001DJBB1,GQY1XT001DNGHO,GQY1XT001DF8NI,GQY1XT001CMRAD,GQY1XT001BFOHP,GQY1XT001EWY9G,GQY1XT001C6S9K,GQY1XT001CMWBB,GQY1XT001B1FFE,GQY1XT001EJVY8,GQY1XT001AQE05,GQY1XT001D3JWS,GQY1XT001B0YID,GQY1XT001A9008,GQY1XT001BC07L,GQY1XT001D59KH,GQY1XT001BKOKU,GQY1XT001CQJKP,GQY1XT001EE043,GQY1XT001A7W7G,GQY1XT001CTMH6,GQY1XT001BDL75,GQY1XT001E03GZ,GQY1XT001DG8UD,GQY1XT001AN98K,GQY1XT001BF7F1,GQY1XT001C0KPV,GQY1XT001D4ROC,GQY1XT001CGRM5,GQY1XT001E048A,GQY1XT001D4EO9,GQY1XT001AT98O,GQY1XT001EUIWC,GQY1XT001B5O17,GQY1XT001DSKZC,GQY1XT001EJ5RL,GQY1XT001BNWON,GQY1XT001C2GOM,GQY1XT001BSI2T,GQY1XT001BSKRP,GQY1XT001EPT5D,GQY1XT001D8NTO,GQY1XT001DYTOF,GQY1XT001AXOTY,GQY1XT001CIJOY,GQY1XT001D4HBG,GQY1XT001BCEVI,GQY1XT001DNQUF,GQY1XT001EW5G8,GQY1XT001BO6P1,GQY1XT001EOCY7,GQY1XT001CP12A,GQY1XT001DOVJ5,GQY1XT001ER7S1,GQY1XT001EPH7Z,GQY1XT001CT89C,GQY1XT001A2EUP,GQY1XT001COFZ4,GQY1XT001EQJWL,GQY1XT001AJ4EO,GQY1XT001EUNME,GQY1XT001A59WC,GQY1XT001D341B,GQY1XT001EY0B1,GQY1XT001ED0JI,GQY1XT001EAGQ1,GQY1XT001DIGVX,GQY1XT001DEDVY,GQY1XT001D58HV,GQY1XT001CYOVL,GQY1XT001CTQCR,GQY1XT001CQUHI,GQY1XT001CIHY4,GQY1XT001CFYPO,GQY1XT001C1R59,GQY1XT001C1A2T,GQY1XT001BIEM5,GQY1XT001BD8RT,GQY1XT001BCR3R,GQY1XT001B0HBR,GQY1XT001AMXND,GQY1XT001A9A3G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C296C"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARCB1"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A146F"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CE14C"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOO7Q"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2EZX"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYMEB"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC1IC"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DE4SZ"; +secondCol = 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+nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNM96"; +secondCol = 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D0M7J,GQY1XT001EQG5V,GQY1XT001DFHQ5,GQY1XT001AQUYI,GQY1XT001CQ9UE,GQY1XT001CETI8,GQY1XT001EMVZ1,GQY1XT001BV56G,GQY1XT001DG1AP,GQY1XT001BJ14K,GQY1XT001CMACS,GQY1XT001EXCWN,GQY1XT001A2MB8,GQY1XT001AZAMU,GQY1XT001B28PV,GQY1XT001CG2HK,GQY1XT001CK1D1,GQY1XT001EQFNY,GQY1XT001CZAZ5,GQY1XT001C0J1F,GQY1XT001B1I5L,GQY1XT001ENKLA,GQY1XT001EM7RK,GQY1XT001C77YC,GQY1XT001B20VW,GQY1XT001DFLU7,GQY1XT001EY1KA,GQY1XT001DZXR2,GQY1XT001BNP73,GQY1XT001A09B7,GQY1XT001BFR8U,GQY1XT001BXRCD,GQY1XT001EJJO9,GQY1XT001ELKBU,GQY1XT001B4660,GQY1XT001A47N7,GQY1XT001BGVA6,GQY1XT001BWZSJ,GQY1XT001A6DVQ,GQY1XT001A6MPY,GQY1XT001B7GFQ,GQY1XT001CLQ4W,GQY1XT001EUU5R,GQY1XT001DVO75,GQY1XT001DQF23,GQY1XT001AO9I2,GQY1XT001AZ68X,GQY1XT001AE5V6,GQY1XT001CRJTY,GQY1XT001AW8P0,GQY1XT001C82FU,GQY1XT001AGFVZ,GQY1XT001B9OW1,GQY1XT001AV6AF,GQY1XT001C30C6,GQY1XT001EG2DY,GQY1XT001B7B3E,GQY1XT001EV0B2,GQY1XT001DVKTG,GQY1XT001CX7D7,GQY1XT001AV32M,GQY1XT001A3XQT,GQY1XT001AX9AP,GQY1XT001BPV24,GQY1XT001DWC64,GQY1XT001BUWMX,GQY1XT001D2R7U,GQY1XT001DW2TL,GQY1XT001AYEGJ,GQY1XT001CFZUE,GQY1XT001BHCBP,GQY1XT001A5YL5,GQY1XT001AEPHZ,GQY1XT001BK4I4,GQY1XT001DSAU5,GQY1XT001CHOW1,GQY1XT001CR7Z1,GQY1XT001A7B2G,GQY1XT001CG2WA,GQY1XT001BM705,GQY1XT001DCV3Q,GQY1XT001EMYM9,GQY1XT001CPN4I,GQY1XT001EDWOO,GQY1XT001ARM7T,GQY1XT001COKWS,GQY1XT001EBXCX,GQY1XT001A68FC,GQY1XT001A6VUU,GQY1XT001ECI6K,GQY1XT001AU1M9,GQY1XT001A0ENF,GQY1XT001EQ76E,GQY1XT001BOWCF,GQY1XT001B37V2,GQY1XT001D5BAK,GQY1XT001BZGTW,GQY1XT001BAHZ5,GQY1XT001BJPV8,GQY1XT001AROQG,GQY1XT001BAQTW,GQY1XT001EMOJB,GQY1XT001DIRD1,GQY1XT001E3H3M,GQY1XT001DGMHG,GQY1XT001EP90Z,GQY1XT001B3EVG,GQY1XT001BIVAS,GQY1XT001CJ52L,GQY1XT001BLUIF,GQY1XT001DR5IO,GQY1XT001DA2PY,GQY1XT001D0RFF,GQY1XT001BYLXS,GQY1XT001ARNDI,GQY1XT001BGGEP,GQY1XT001AFU1X,GQY1XT001DDBVP,GQY1XT001B16PK,GQY1XT001A6OC9,GQY1XT001AQCRS,GQY1XT001DMRL8,GQY1XT001EDTSU,GQY1XT001BDMJD,GQY1XT001DIYN5,GQY1XT001BJY7J,GQY1XT001BYTPL,GQY1XT001CW2Q7,GQY1XT001DZ7V7,GQY1XT001EUIHR,GQY1XT001DZSUN,GQY1XT001CN6SL,GQY1XT001BRSID,GQY1XT001DP80R,GQY1XT001EMU2G,GQY1XT001B2O50,GQY1XT001EFB1L,GQY1XT001AI4TW,GQY1XT001BQ1T0,GQY1XT001C3ZOE,GQY1XT001CWVPN,GQY1XT001EA86J,GQY1XT001BOJUY,GQY1XT001BWC6M,GQY1XT001CDU3G,GQY1XT001BRWK6,GQY1XT001DNXE3,GQY1XT001CNU0A,GQY1XT001D37PV,GQY1XT001AMY9N,GQY1XT001AOGJ6,GQY1XT001EW46B,GQY1XT001D9YPD,GQY1XT001EKSBS,GQY1XT001D3E1M,GQY1XT001C7TEX,GQY1XT001B7659,GQY1XT001CGM9N,GQY1XT001DQYOK,GQY1XT001D23XQ,GQY1XT001CBQHI,GQY1XT001A6A9D,GQY1XT001CWEGT,GQY1XT001CI1L2,GQY1XT001CDYJJ,GQY1XT001EISLX,GQY1XT001EZ4KL,GQY1XT001BTZK3,GQY1XT001DWP5P,GQY1XT001BKAPC,GQY1XT001C8Z4W,GQY1XT001C43FM,GQY1XT001DYPII,GQY1XT001DW3AX,GQY1XT001DMS6X,GQY1XT001B9M35,GQY1XT001B54JH,GQY1XT001BDZJE,GQY1XT001EM4XC,GQY1XT001EYST8,GQY1XT001CMOOE,GQY1XT001AW1P8,GQY1XT001B12ES,GQY1XT001B6V2L,GQY1XT001DA16D,GQY1XT001CI9JY,GQY1XT001A4XMF,GQY1XT001CPV7O,GQY1XT001EW3NR,GQY1XT001EK7WQ,GQY1XT001DMTPS,GQY1XT001DBZ6G,GQY1XT001CHIQN,GQY1XT001C9SRB,GQY1XT001C4UKY,GQY1XT001BKTY7,GQY1XT001ANI8H,GQY1XT001AIDW1,GQY1XT001A55HK,GQY1XT001CH01X,GQY1XT001CA607,GQY1XT001ARBI7,GQY1XT001BT2OZ,GQY1XT001DO8Q3,GQY1XT001CAD8J,GQY1XT001BS7OQ,GQY1XT001CZBIS,GQY1XT001EUEKX,GQY1XT001A61TO,GQY1XT001DDSS8,GQY1XT001D73OZ,GQY1XT001EYG44,GQY1XT001C176M,GQY1XT001CXEP3,GQY1XT001EEDDA,GQY1XT001C4B57,GQY1XT001DE51M,GQY1XT001AVYS2,GQY1XT001CAR89,GQY1XT001BWEPW,GQY1XT001A2PHD,GQY1XT001EJC9O,GQY1XT001EPQ1F,GQY1XT001D02RQ,GQY1XT001BL7G4,GQY1XT001EMB5G,GQY1XT001CBDQ0,GQY1XT001BV7R4,GQY1XT001ECTMS,GQY1XT001EH1B7,GQY1XT001DNAZT,GQY1XT001ECD9V,GQY1XT001BCQB8,GQY1XT001B023J,GQY1XT001CK9O1,GQY1XT001ANJP6,GQY1XT001DZUSK,GQY1XT001BRXLX,GQY1XT001B9CWL,GQY1XT001AORL7,GQY1XT001A6IQW,GQY1XT001CLMU2,GQY1XT001AY00V,GQY1XT001AQ3RB,GQY1XT001D545J,GQY1XT001BWK5F,GQY1XT001DN1JG,GQY1XT001CSPVX,GQY1XT001EMZZV,GQY1XT001B9PIW,GQY1XT001DQIX9,GQY1XT001AOYWH,GQY1XT001BU4TM,GQY1XT001E1CGJ,GQY1XT001CPOK1,GQY1XT001BS90U,GQY1XT001EOE6M,GQY1XT001ELVHD,GQY1XT001EJFTW,GQY1XT001D822F,GQY1XT001DHLMG,GQY1XT001EXKIX,GQY1XT001CID8F,GQY1XT001AKL12,GQY1XT001AY6LL,GQY1XT001BEM4U,GQY1XT001C5ZAV,GQY1XT001CH3IX,GQY1XT001BLND0,GQY1XT001AOVBK,GQY1XT001EMVUM,GQY1XT001DTC3S,GQY1XT001ELU7W,GQY1XT001CU6YC,GQY1XT001DEN62,GQY1XT001EOMAG,GQY1XT001CV3WI,GQY1XT001ANO4L,GQY1XT001DJ460,GQY1XT001DAHL3,GQY1XT001DKY84,GQY1XT001DIDRH,GQY1XT001CG2G5,GQY1XT001BSTDC,GQY1XT001BOEU5,GQY1XT001BFBFT,GQY1XT001B39XM,GQY1XT001B0MM7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AK7BA"; +secondCol = "GQY1XT001AK7BA,GQY1XT001CF8V5,GQY1XT001D34WA,GQY1XT001EWVQ8,GQY1XT001DXEYN,GQY1XT001DDIXL,GQY1XT001EVZ02,GQY1XT001DJZHO,GQY1XT001EXBUU,GQY1XT001DJC8B,GQY1XT001DW534,GQY1XT001E3C4R,GQY1XT001AQKRF,GQY1XT001BPCP5,GQY1XT001CFBSJ,GQY1XT001AIXDL,GQY1XT001BCEHG,GQY1XT001CGBJE,GQY1XT001CP8HS,GQY1XT001BC97T,GQY1XT001CVCKG,GQY1XT001EP9LC,GQY1XT001EPLCA,GQY1XT001EHCA3,GQY1XT001COZWE,GQY1XT001DNRJH,GQY1XT001CSXUZ,GQY1XT001EJR1T,GQY1XT001CBJON,GQY1XT001C8HMG,GQY1XT001ECU4X,GQY1XT001ENL62,GQY1XT001CS7IY,GQY1XT001D5PXZ,GQY1XT001A5IAV,GQY1XT001BBNGI,GQY1XT001B4GYI,GQY1XT001A2DKJ,GQY1XT001CBSSY,GQY1XT001EESJQ,GQY1XT001AOS5Z,GQY1XT001CK0XI,GQY1XT001EG1US,GQY1XT001BXBLP,GQY1XT001EMGLG,GQY1XT001BHB8H,GQY1XT001A4FYO,GQY1XT001A3Q8M,GQY1XT001DRPMQ,GQY1XT001DSMR8,GQY1XT001DJ8Z7,GQY1XT001ER2PV,GQY1XT001CVTFQ,GQY1XT001AZFMM,GQY1XT001C3AIB,GQY1XT001B7QPA,GQY1XT001DCV7M,GQY1XT001B82WI,GQY1XT001ASIWP,GQY1XT001AFPDW,GQY1XT001BRXJR,GQY1XT001AEKBJ,GQY1XT001DTJSO,GQY1XT001DDGAZ,GQY1XT001BD0QZ,GQY1XT001D8MNM,GQY1XT001CE1WL,GQY1XT001CEB9G,GQY1XT001E5IVN,GQY1XT001EUHI8,GQY1XT001BU07J,GQY1XT001EOQHZ,GQY1XT001CM9OX,GQY1XT001DFNBL,GQY1XT001BQY89,GQY1XT001CXBM5,GQY1XT001AVE2B,GQY1XT001DBMF1,GQY1XT001B29UP,GQY1XT001AJRY8,GQY1XT001BJO01,GQY1XT001BKJNA,GQY1XT001AP47K,GQY1XT001EQNXB,GQY1XT001D8EQO,GQY1XT001EEBVP,GQY1XT001CDE3M,GQY1XT001CZBQV,GQY1XT001EM0SN,GQY1XT001EENEE,GQY1XT001BZ9DG,GQY1XT001BVTE1,GQY1XT001EJVPK,GQY1XT001BO8Z9,GQY1XT001CJQHC,GQY1XT001AY42B,GQY1XT001ED8KP,GQY1XT001B0PAE,GQY1XT001ERRTI,GQY1XT001EBTDZ,GQY1XT001AGKLN,GQY1XT001BZJN4,GQY1XT001EWOZV,GQY1XT001ECVIL,GQY1XT001BT9DG,GQY1XT001DV0WA,GQY1XT001EGAVK,GQY1XT001DYVID,GQY1XT001DNZ0E,GQY1XT001CW5HV,GQY1XT001EYP9T,GQY1XT001C6RTA,GQY1XT001DSNYR,GQY1XT001ETVWY,GQY1XT001BCYDO,GQY1XT001B5VR0,GQY1XT001EAZ2Q,GQY1XT001C8SIP,GQY1XT001EM02B,GQY1XT001C8LFH,GQY1XT001AYZLL,GQY1XT001ES3IA,GQY1XT001EGTQ0,GQY1XT001EDT34,GQY1XT001D64I6,GQY1XT001C52XK,GQY1XT001BLZ5F,GQY1XT001BFQM5,GQY1XT001AUME0,GQY1XT001ALGW2,GQY1XT001AZ30F,GQY1XT001D23BW,GQY1XT001DCJ35,GQY1XT001EEO5V,GQY1XT001E1MQD,GQY1XT001CQUOR,GQY1XT001BU3GS,GQY1XT001E092L,GQY1XT001C7QT2,GQY1XT001BUKWL,GQY1XT001C9H8Y,GQY1XT001BINP3,GQY1XT001EIJ3F,GQY1XT001DWRY5,GQY1XT001BDB14,GQY1XT001EAFAC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCUK5"; +secondCol = "GQY1XT001BCUK5,GQY1XT001D4VMD,GQY1XT001ALTOX,GQY1XT001BGR1Y,GQY1XT001DU3JO,GQY1XT001BRHO5,GQY1XT001EEV91,GQY1XT001BL9A8,GQY1XT001CSGP4,GQY1XT001AM2LU,GQY1XT001EVO2D,GQY1XT001BO752,GQY1XT001D45LT,GQY1XT001CEG62,GQY1XT001C4P5R,GQY1XT001EUN4F,GQY1XT001DX3PO,GQY1XT001DM34N,GQY1XT001BEX0I,GQY1XT001CFLW9,GQY1XT001EGGHH,GQY1XT001BTRWS,GQY1XT001EPXX7,GQY1XT001DPE2U,GQY1XT001AP7KE,GQY1XT001EZEXY,GQY1XT001DLLL4,GQY1XT001DBMLK,GQY1XT001A76FC,GQY1XT001ETNHT,GQY1XT001C0VWH,GQY1XT001EQ9AU,GQY1XT001C40RV,GQY1XT001DF4IG,GQY1XT001D15ZY,GQY1XT001BVVNR,GQY1XT001EJ5X1,GQY1XT001B9NTN,GQY1XT001B4YC4,GQY1XT001BUXFV,GQY1XT001ASB3A,GQY1XT001BR05H,GQY1XT001DKLQW,GQY1XT001AJASV,GQY1XT001CC6Z6,GQY1XT001ESIJ2,GQY1XT001DYBZ1,GQY1XT001BOTHU,GQY1XT001BM5LX,GQY1XT001B457A,GQY1XT001CZ5UX,GQY1XT001ECXCW,GQY1XT001AVIGY,GQY1XT001BHT34,GQY1XT001AIGOU,GQY1XT001AIUAF,GQY1XT001CBBEH,GQY1XT001BF7DH,GQY1XT001BAD7Y,GQY1XT001BPHN4,GQY1XT001AQ3ZV,GQY1XT001AUYMF,GQY1XT001CZHQX,GQY1XT001CWVFX,GQY1XT001C0FC6,GQY1XT001A2XJU,GQY1XT001B5MP6,GQY1XT001B1LZP,GQY1XT001EX68G,GQY1XT001DDGRV,GQY1XT001EMVUQ,GQY1XT001EPO98,GQY1XT001CIAW2,GQY1XT001BJOAU,GQY1XT001BZRW1,GQY1XT001CE8Q3,GQY1XT001BE046,GQY1XT001C5NIE,GQY1XT001EJXJ8,GQY1XT001DQR8P,GQY1XT001C70Q0,GQY1XT001C5W1S,GQY1XT001BQCYB,GQY1XT001BDJ32,GQY1XT001BHRUL,GQY1XT001B7LAK,GQY1XT001EIRKH,GQY1XT001B6WDH,GQY1XT001AHYDL,GQY1XT001EXRJX,GQY1XT001C7FCB,GQY1XT001D49VZ,GQY1XT001B0TMD,GQY1XT001C0TH1,GQY1XT001EEPD8,GQY1XT001BSBX8,GQY1XT001DLFTG,GQY1XT001D673U,GQY1XT001E4NDT,GQY1XT001DALZQ,GQY1XT001BM9P3,GQY1XT001C2C37,GQY1XT001C9LPJ,GQY1XT001ETOR4,GQY1XT001CJV6N,GQY1XT001C7EJR,GQY1XT001B4SWT,GQY1XT001DVUAG,GQY1XT001DPTFS,GQY1XT001ELFOR,GQY1XT001CNPY3,GQY1XT001CBZWR,GQY1XT001C99RP,GQY1XT001BP4U8,GQY1XT001EK0B7,GQY1XT001DDYL9,GQY1XT001EM9V4,GQY1XT001CUJKI,GQY1XT001AU5SQ,GQY1XT001B0XED,GQY1XT001BV8B2,GQY1XT001DSKHU,GQY1XT001CN315,GQY1XT001CHCCB,GQY1XT001C4S4S,GQY1XT001CW9FS,GQY1XT001DXEQ7,GQY1XT001A2HNS,GQY1XT001CZ70V,GQY1XT001CUL8Q,GQY1XT001DPKXE,GQY1XT001CKIY9,GQY1XT001CX5IT,GQY1XT001DN4XK,GQY1XT001B0NYU,GQY1XT001DJBNE,GQY1XT001B95RW,GQY1XT001EOD69,GQY1XT001EQYCD,GQY1XT001BR2PY,GQY1XT001CQWTK,GQY1XT001DW1KF,GQY1XT001AO0DG,GQY1XT001DHWJQ,GQY1XT001E3SAN,GQY1XT001B9CS0,GQY1XT001EQ0OX,GQY1XT001A8QNV,GQY1XT001CE1XX,GQY1XT001BTFUX,GQY1XT001CX3CZ,GQY1XT001B357Y,GQY1XT001EGCHP,GQY1XT001EO1WP,GQY1XT001CJ3OV,GQY1XT001AVMJ8,GQY1XT001EO7NR,GQY1XT001EIVHC,GQY1XT001DNN86,GQY1XT001DDYLN,GQY1XT001C6HMQ,GQY1XT001BHEXX,GQY1XT001BAO3S,GQY1XT001AI9GU,GQY1XT001A83R6,GQY1XT001BBF0X,GQY1XT001BRQQP,GQY1XT001EOXDC,GQY1XT001AS7I9,GQY1XT001C6OYM,GQY1XT001EPH2V,GQY1XT001DF8TS,GQY1XT001CQLE0,GQY1XT001CLXQ8,GQY1XT001EY7TG,GQY1XT001CRVTN,GQY1XT001CQEWM,GQY1XT001CMFTL,GQY1XT001AWJ5H,GQY1XT001BDA2X,GQY1XT001DFNLB,GQY1XT001ESFV3,GQY1XT001D3B1T,GQY1XT001DYHFC,GQY1XT001BBNIG,GQY1XT001D4LWF,GQY1XT001CUD10,GQY1XT001BYNXL,GQY1XT001ER4ZW,GQY1XT001C9E2B,GQY1XT001C18KH,GQY1XT001DVM7B,GQY1XT001BZISR,GQY1XT001D9IQC,GQY1XT001CWOPA,GQY1XT001DYMNJ,GQY1XT001EF3G4,GQY1XT001ECY3J,GQY1XT001AJTQA,GQY1XT001D2FGX,GQY1XT001B31VK,GQY1XT001AETZB,GQY1XT001BVJ4P,GQY1XT001ARDJY,GQY1XT001D3NNM,GQY1XT001D29X2,GQY1XT001D3OEO,GQY1XT001AXB6H,GQY1XT001C00XF,GQY1XT001CKUZK,GQY1XT001CLZUD,GQY1XT001EOIRT,GQY1XT001EGPJF,GQY1XT001DFMK8,GQY1XT001CYDIC,GQY1XT001CJ3PB,GQY1XT001BH1P7,GQY1XT001DXCAC,GQY1XT001CLU06,GQY1XT001C0S46,GQY1XT001AFKVF,GQY1XT001A262Y,GQY1XT001DLWH9,GQY1XT001CJI46,GQY1XT001CTV7H,GQY1XT001BLNVC,GQY1XT001ETRFN,GQY1XT001DJRL9,GQY1XT001CK5FP,GQY1XT001BSQFG,GQY1XT001BIBUL,GQY1XT001BEFSJ,GQY1XT001DNH0S,GQY1XT001C5316,GQY1XT001AUSGH,GQY1XT001C6IN4,GQY1XT001A9UZJ,GQY1XT001B5SSJ,GQY1XT001D0R9N,GQY1XT001CNAXL,GQY1XT001EUW6L,GQY1XT001CB50K,GQY1XT001BJ0IU,GQY1XT001BYL56,GQY1XT001C1CLS,GQY1XT001DWL2N,GQY1XT001BE38S,GQY1XT001CQBJ0,GQY1XT001B1CEF,GQY1XT001CL4NZ,GQY1XT001DKT0E,GQY1XT001CLNJG,GQY1XT001CWWUU,GQY1XT001A3ZOP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A05IW"; +secondCol = "GQY1XT001A05IW,GQY1XT001CXZ2W,GQY1XT001C0HWK,GQY1XT001B50QR,GQY1XT001AYV56,GQY1XT001EQ1S8,GQY1XT001AHW1J,GQY1XT001CGTL4,GQY1XT001BMS9F,GQY1XT001EEZ1B,GQY1XT001EILX3,GQY1XT001EAXBY,GQY1XT001D2VQL,GQY1XT001CNCO4,GQY1XT001ETR75,GQY1XT001DKTJF,GQY1XT001C0DSU,GQY1XT001BOR7N,GQY1XT001DG0YF,GQY1XT001CZWH3,GQY1XT001ALYCX,GQY1XT001CWWCB,GQY1XT001BFUFO,GQY1XT001CEK3N,GQY1XT001B6VR4,GQY1XT001BSQCW,GQY1XT001CENEM,GQY1XT001EXFYH,GQY1XT001AKY9W,GQY1XT001A2D6O,GQY1XT001AUN6I,GQY1XT001DLHY8,GQY1XT001CNOA2,GQY1XT001EAWCO,GQY1XT001ASIFE,GQY1XT001BJVEY,GQY1XT001DT024,GQY1XT001EK9QH,GQY1XT001D7B6H,GQY1XT001ES0TI,GQY1XT001BGF9W,GQY1XT001APPGJ,GQY1XT001A9KKV,GQY1XT001BZYZP,GQY1XT001AMSUA,GQY1XT001DALMF,GQY1XT001BO2G0,GQY1XT001CNZI9,GQY1XT001BMG2O,GQY1XT001EFTRY,GQY1XT001DE0IU,GQY1XT001D9NRG,GQY1XT001D3TPZ,GQY1XT001CRAGT,GQY1XT001C1PEV,GQY1XT001CIK1N,GQY1XT001A3CGK,GQY1XT001CDRD7,GQY1XT001BDUFX,GQY1XT001A2E4A,GQY1XT001D48VP,GQY1XT001D2ECD,GQY1XT001AJ2C8,GQY1XT001D99K2,GQY1XT001DZX2Y,GQY1XT001A4M04,GQY1XT001C7JC5,GQY1XT001DKDU2,GQY1XT001DEV3M,GQY1XT001A33YM,GQY1XT001EG9GC,GQY1XT001EONLE,GQY1XT001EETX4,GQY1XT001EL1UZ,GQY1XT001ES3Q3,GQY1XT001DCI0G,GQY1XT001EO5GV,GQY1XT001EV3OD,GQY1XT001BQ90X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN2XX"; +secondCol = "GQY1XT001AN2XX,GQY1XT001AWEI3,GQY1XT001CX4B8,GQY1XT001DK4OU,GQY1XT001AS8RM,GQY1XT001BUWEG,GQY1XT001BI2P7,GQY1XT001A9BYD,GQY1XT001C8M48,GQY1XT001B38JA,GQY1XT001B2RTF,GQY1XT001DSFOT,GQY1XT001CSDVC,GQY1XT001A27Q0,GQY1XT001BAR3N,GQY1XT001AJIFS,GQY1XT001DZUXG,GQY1XT001BLV5C,GQY1XT001CY5PZ,GQY1XT001ECEQ1,GQY1XT001DM4BF,GQY1XT001A2BJV,GQY1XT001EN6N9,GQY1XT001BT4WR,GQY1XT001DH09O,GQY1XT001BBH5P,GQY1XT001DCA7T,GQY1XT001DDQFY,GQY1XT001DEWOD,GQY1XT001C4OHH,GQY1XT001DCM99,GQY1XT001DAL2C,GQY1XT001CEB0T,GQY1XT001C2RKN,GQY1XT001DTCR7,GQY1XT001D1X09,GQY1XT001EFKQQ,GQY1XT001AL46G,GQY1XT001DKVDU,GQY1XT001DIYRV,GQY1XT001CVOE0,GQY1XT001AS02W,GQY1XT001A855D,GQY1XT001A9BN6,GQY1XT001A4URZ,GQY1XT001CEKEE,GQY1XT001EHS46,GQY1XT001EGI83,GQY1XT001CVG2J,GQY1XT001BSNN1,GQY1XT001BNHBC,GQY1XT001AQ6WJ,GQY1XT001AMBFL,GQY1XT001AGSMP,GQY1XT001CY7Y4,GQY1XT001EBU5N,GQY1XT001EEGBN,GQY1XT001D1E6R,GQY1XT001BSTJS,GQY1XT001BMLJ1,GQY1XT001CLSWG,GQY1XT001D9MV0,GQY1XT001EBB4U,GQY1XT001BBSQ9,GQY1XT001BV8W0,GQY1XT001B8F71,GQY1XT001ENHBG,GQY1XT001DSV6Z,GQY1XT001AJG82,GQY1XT001E0QAJ,GQY1XT001CUIJN,GQY1XT001AH8MK,GQY1XT001BJP94,GQY1XT001A3VEP,GQY1XT001EYG82,GQY1XT001EIP7T,GQY1XT001D6JTL,GQY1XT001CZCED,GQY1XT001D5VAB,GQY1XT001AFNW2,GQY1XT001CGM05,GQY1XT001C5J67,GQY1XT001A1L8Y,GQY1XT001BZC7K,GQY1XT001AF3EL,GQY1XT001A7R8I,GQY1XT001B3J24,GQY1XT001C1DI7,GQY1XT001ANDMA,GQY1XT001CCE54,GQY1XT001AYWJA,GQY1XT001C878C,GQY1XT001BK56P,GQY1XT001A8V2P,GQY1XT001BNIQ1,GQY1XT001DYMU6,GQY1XT001CZOH3,GQY1XT001EMKZU,GQY1XT001C9PGB,GQY1XT001CSKP1,GQY1XT001DM7YJ,GQY1XT001C31VS,GQY1XT001BENRO,GQY1XT001AZ70Z,GQY1XT001B4UOV,GQY1XT001AWNDT,GQY1XT001BOX0U,GQY1XT001EQLOI,GQY1XT001A6RUT,GQY1XT001AP7II,GQY1XT001DGPUJ,GQY1XT001EVPH5,GQY1XT001DMVUC,GQY1XT001CNA4E,GQY1XT001BQCC5,GQY1XT001CPCH1,GQY1XT001DETPI,GQY1XT001BV1EN,GQY1XT001BRJ40,GQY1XT001B5FR9,GQY1XT001DIGI3,GQY1XT001CM8JE,GQY1XT001B9FTI,GQY1XT001AIJWE,GQY1XT001EAR82,GQY1XT001AFNLO,GQY1XT001CC9GJ,GQY1XT001D81AU,GQY1XT001CAV9O,GQY1XT001A8FBE,GQY1XT001EGIML,GQY1XT001BAXFH,GQY1XT001CK8F7,GQY1XT001C4UVG,GQY1XT001EIQ18,GQY1XT001C9BX3,GQY1XT001BHPOG,GQY1XT001D7KNB,GQY1XT001CNXG8,GQY1XT001DXH4H,GQY1XT001CAIKL,GQY1XT001EJ29V,GQY1XT001EK6NU,GQY1XT001CU31Z,GQY1XT001EE669,GQY1XT001A84OJ,GQY1XT001D538L,GQY1XT001DYSX8,GQY1XT001CLHS4,GQY1XT001ECJ54,GQY1XT001DUKN5,GQY1XT001BAP1X,GQY1XT001CMZMV,GQY1XT001CMPKS,GQY1XT001DQSEY,GQY1XT001BKXCU,GQY1XT001ER6X0,GQY1XT001CRWBQ,GQY1XT001CHAXK,GQY1XT001DHDXD,GQY1XT001EPVEI,GQY1XT001B9M90,GQY1XT001DQSVB,GQY1XT001CHYKX,GQY1XT001CIJOL,GQY1XT001EOO4R,GQY1XT001CFWNL,GQY1XT001BXT3U,GQY1XT001DYNCO,GQY1XT001DA0W1,GQY1XT001D5OZJ,GQY1XT001CEK2A,GQY1XT001AS7W5,GQY1XT001D48H7,GQY1XT001C613O,GQY1XT001DG7JT,GQY1XT001D6YV6,GQY1XT001CCAU0,GQY1XT001BKS3J,GQY1XT001EFYFS,GQY1XT001D1P0B,GQY1XT001CE4Q9,GQY1XT001BRP93,GQY1XT001B0ICU,GQY1XT001EWFLT,GQY1XT001A19MO,GQY1XT001ARSWT,GQY1XT001B2STO,GQY1XT001ANM3D,GQY1XT001A7GTX,GQY1XT001EUENS,GQY1XT001CXVR5,GQY1XT001EASLV,GQY1XT001BRR5D,GQY1XT001BEJE2,GQY1XT001DOVG6,GQY1XT001CZCEA,GQY1XT001BYKII,GQY1XT001CWHRO,GQY1XT001AMX0Y,GQY1XT001A5OEE,GQY1XT001EPEPN,GQY1XT001BU17J,GQY1XT001D1R17,GQY1XT001AMSY4,GQY1XT001CIQ7E,GQY1XT001BC8FK,GQY1XT001C86RH,GQY1XT001DQFZ2,GQY1XT001A85J4,GQY1XT001A7PM6,GQY1XT001BDVJV,GQY1XT001AEC2D,GQY1XT001CW29M,GQY1XT001ESI7M,GQY1XT001A57UL,GQY1XT001CHM1A,GQY1XT001CT3ZC,GQY1XT001DVI13,GQY1XT001DOPVQ,GQY1XT001B47U5,GQY1XT001CL0HP,GQY1XT001DLZ56,GQY1XT001EF9B4,GQY1XT001C82GG,GQY1XT001CVRTD,GQY1XT001B2K00,GQY1XT001AGNEK,GQY1XT001E2T5U,GQY1XT001CMJ76,GQY1XT001AR4S5,GQY1XT001DQNZH,GQY1XT001DGV7O,GQY1XT001EU2OP,GQY1XT001DSQGW,GQY1XT001DRMHU,GQY1XT001C19I0,GQY1XT001EB1O1,GQY1XT001C1CP6,GQY1XT001BAOVH,GQY1XT001BE45Z,GQY1XT001BKN8C,GQY1XT001AEQFR,GQY1XT001EW1B2,GQY1XT001BHH7L,GQY1XT001EA50B,GQY1XT001DQZ85,GQY1XT001BUH0W,GQY1XT001B2MEJ,GQY1XT001C8UCY,GQY1XT001B5H3N,GQY1XT001AG3OE,GQY1XT001DYTR3,GQY1XT001BX04B,GQY1XT001D9U2S,GQY1XT001D86IU,GQY1XT001B61KR,GQY1XT001B3TSA,GQY1XT001EIUMU,GQY1XT001ER74N,GQY1XT001CL5K9,GQY1XT001DW5LF,GQY1XT001AG99A,GQY1XT001ALJN1,GQY1XT001CB50D,GQY1XT001BSVGJ,GQY1XT001BYJ5G,GQY1XT001CFSQ8,GQY1XT001EDDS8,GQY1XT001CGW9R,GQY1XT001DYJRV,GQY1XT001B6NLM,GQY1XT001B35VX,GQY1XT001C9F1R,GQY1XT001DWZJ6,GQY1XT001AMEMX,GQY1XT001CCOOC,GQY1XT001B39LY,GQY1XT001EQQZR,GQY1XT001EL0DQ,GQY1XT001BQZXF,GQY1XT001CUND5,GQY1XT001EG920,GQY1XT001ELQV7,GQY1XT001A1ISF,GQY1XT001C466T,GQY1XT001B2K9J,GQY1XT001DT2DR,GQY1XT001BQARF,GQY1XT001C6DNW,GQY1XT001BWMVZ,GQY1XT001D4UY2,GQY1XT001CC8ZY,GQY1XT001C0VEL,GQY1XT001DMB1B,GQY1XT001DJQ7J,GQY1XT001EV8XV,GQY1XT001CQU22,GQY1XT001CHSGN,GQY1XT001APRCS,GQY1XT001AOZRD,GQY1XT001EZD4H,GQY1XT001CLJFA,GQY1XT001CBSBM,GQY1XT001B3P41,GQY1XT001ER6Z3,GQY1XT001D8V91,GQY1XT001EZKXI,GQY1XT001AXL45,GQY1XT001DUB8N,GQY1XT001EZIZC,GQY1XT001DYCQG,GQY1XT001B29NR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTNPK"; +secondCol = "GQY1XT001CTNPK,GQY1XT001CU27P,GQY1XT001B81YL,GQY1XT001ECSBS,GQY1XT001CWB9M,GQY1XT001BCQUD,GQY1XT001CVI6Q,GQY1XT001BX4LJ,GQY1XT001BMLOE,GQY1XT001DOA2T,GQY1XT001BX3WT,GQY1XT001DXZ1C,GQY1XT001B5JQG,GQY1XT001BMO7I,GQY1XT001CR3CR,GQY1XT001A61KY,GQY1XT001E1SJI,GQY1XT001CWWZN,GQY1XT001BC6U3,GQY1XT001B948C,GQY1XT001B0A0Q,GQY1XT001AF6RH,GQY1XT001B6OWX,GQY1XT001ARY8T,GQY1XT001CVWVM,GQY1XT001EEQUP,GQY1XT001EZUEN,GQY1XT001DUYZL,GQY1XT001B1N3K,GQY1XT001DTZBC,GQY1XT001EVSVD,GQY1XT001DQA5A,GQY1XT001DG7VN,GQY1XT001EBCT6,GQY1XT001ER14C,GQY1XT001BMBPT,GQY1XT001AJKQN,GQY1XT001CLCD0,GQY1XT001B81OA,GQY1XT001A44UN,GQY1XT001AKQ9D,GQY1XT001BK75L,GQY1XT001EXSWI,GQY1XT001ER6W4,GQY1XT001DZPHQ,GQY1XT001CXCTU,GQY1XT001AM3YF,GQY1XT001AV89G,GQY1XT001A65T9,GQY1XT001AEFSB,GQY1XT001CFN9B,GQY1XT001B17FN,GQY1XT001ANNCH,GQY1XT001BEGCX,GQY1XT001A58WO,GQY1XT001AJBFD,GQY1XT001BQIQX,GQY1XT001DLTPF,GQY1XT001DXJZR,GQY1XT001EMGV8,GQY1XT001DLRRT,GQY1XT001DXHKA,GQY1XT001B5TLS,GQY1XT001BYUM8,GQY1XT001B72BD,GQY1XT001D38CO,GQY1XT001BXRFS,GQY1XT001E0QU3,GQY1XT001EWTT1,GQY1XT001CT2OB,GQY1XT001DO4Y1,GQY1XT001BSEII,GQY1XT001C4MTN,GQY1XT001EBXAD,GQY1XT001D4HYP,GQY1XT001B84OH,GQY1XT001CL6EN,GQY1XT001ERC3I,GQY1XT001D9AMJ,GQY1XT001D3YMP,GQY1XT001D5D5K,GQY1XT001DCPEL,GQY1XT001B1QR7,GQY1XT001DXI63,GQY1XT001CNU3O,GQY1XT001B9BIC,GQY1XT001BQCIT,GQY1XT001BXBJH,GQY1XT001EX7UF,GQY1XT001CJJWT,GQY1XT001CBE6S,GQY1XT001AWR6D,GQY1XT001EKWZJ,GQY1XT001A6VDJ,GQY1XT001CMWKT,GQY1XT001B6YGA,GQY1XT001BTQEG,GQY1XT001BIXKZ,GQY1XT001AIZNS,GQY1XT001C0G17,GQY1XT001BYXSY,GQY1XT001EK0RC,GQY1XT001CGL2U,GQY1XT001DBFER,GQY1XT001AFTW8,GQY1XT001CWV98,GQY1XT001D5I3K,GQY1XT001ETUY9,GQY1XT001ER1H2,GQY1XT001BEFGE,GQY1XT001ESJZ7,GQY1XT001DUU28,GQY1XT001ANWPI,GQY1XT001EVD14,GQY1XT001D2TD5,GQY1XT001DDHHP,GQY1XT001EDSXO,GQY1XT001A4MI1,GQY1XT001EVDMC,GQY1XT001DKV6K,GQY1XT001BM2ER,GQY1XT001BF6JX,GQY1XT001DFOP8,GQY1XT001CK1XC,GQY1XT001ASVY5,GQY1XT001CYI03,GQY1XT001AFKP5,GQY1XT001APCOA,GQY1XT001BBDV1,GQY1XT001EA35P,GQY1XT001C6UDH,GQY1XT001BCWMB,GQY1XT001BRJYX,GQY1XT001EJE8R,GQY1XT001A3WS3,GQY1XT001DKL4V,GQY1XT001C10VX,GQY1XT001B7MBL,GQY1XT001CUF9T,GQY1XT001C1GHH,GQY1XT001A1P6B,GQY1XT001E1MNM,GQY1XT001EWOTU,GQY1XT001BP9KS,GQY1XT001AID43,GQY1XT001A31ZO,GQY1XT001EPWIH,GQY1XT001B12UH,GQY1XT001CZ9HX,GQY1XT001BK6UH,GQY1XT001ELIFB,GQY1XT001C81LG,GQY1XT001A0TZZ,GQY1XT001D05N0,GQY1XT001C819G,GQY1XT001C7P6W,GQY1XT001A26PT,GQY1XT001DANWN,GQY1XT001EGZTF,GQY1XT001B66HE,GQY1XT001BFSD4,GQY1XT001A52KB,GQY1XT001BV0UY,GQY1XT001B3R8Z,GQY1XT001CQUC4,GQY1XT001BQ59N,GQY1XT001DSDON,GQY1XT001CLMW8,GQY1XT001EH124,GQY1XT001AVWU3,GQY1XT001DA098,GQY1XT001BIA3Z,GQY1XT001D8X90,GQY1XT001DVPR3,GQY1XT001DUIW9,GQY1XT001CA4GL,GQY1XT001CG76I,GQY1XT001D340N,GQY1XT001A3L1Q,GQY1XT001DYKJ5,GQY1XT001C4UAJ,GQY1XT001EWESI,GQY1XT001ESK9K,GQY1XT001DKMKQ,GQY1XT001EFIX6,GQY1XT001BH9FK,GQY1XT001AJWKN,GQY1XT001A94N9,GQY1XT001CX02V,GQY1XT001C2STD,GQY1XT001EYNWY,GQY1XT001EH2FC,GQY1XT001D7JSB,GQY1XT001DWGUC,GQY1XT001EXHJZ,GQY1XT001D86VQ,GQY1XT001DNII0,GQY1XT001DQ7O7,GQY1XT001CJDRL,GQY1XT001A8RDU,GQY1XT001BSO8W,GQY1XT001BAJ3R,GQY1XT001CCRO1,GQY1XT001CIWIT,GQY1XT001BS1UT,GQY1XT001A4FNC,GQY1XT001C9VJD,GQY1XT001A8DUD,GQY1XT001EFK6Z,GQY1XT001DEMFJ,GQY1XT001EST5G,GQY1XT001CRSID,GQY1XT001EJ9GP,GQY1XT001EDWLW,GQY1XT001AUSU6,GQY1XT001CGXHN,GQY1XT001AW7GM,GQY1XT001EVUKM,GQY1XT001ERHHS,GQY1XT001D7Z3E,GQY1XT001C1QAW,GQY1XT001BUAKC,GQY1XT001BPZJN,GQY1XT001BHFHO,GQY1XT001BAFRE,GQY1XT001B4GEQ,GQY1XT001AM8NQ,GQY1XT001EHTFQ,GQY1XT001BAMGU,GQY1XT001EO6E5,GQY1XT001CMV8N,GQY1XT001BJ407,GQY1XT001BL2MV,GQY1XT001CBCVC,GQY1XT001BY6VK,GQY1XT001D71G1,GQY1XT001CTTJB,GQY1XT001DMMLO,GQY1XT001AV4D0,GQY1XT001ES7OF,GQY1XT001B5AN3,GQY1XT001C8X56,GQY1XT001DOTC0,GQY1XT001DQBJU,GQY1XT001AYAXO,GQY1XT001A30V5,GQY1XT001B4WF7,GQY1XT001A58ZH,GQY1XT001B8OES,GQY1XT001D4L89,GQY1XT001EO1VJ,GQY1XT001EMIQY,GQY1XT001A2XCH,GQY1XT001B9MWQ,GQY1XT001CSZNJ,GQY1XT001B4TN9,GQY1XT001CTHMU,GQY1XT001C2OB6,GQY1XT001EKVJB,GQY1XT001DPOYM,GQY1XT001BSITF,GQY1XT001AIH2F,GQY1XT001CFHR4,GQY1XT001CW57M,GQY1XT001CHIIE,GQY1XT001AHYLB,GQY1XT001DSCCE,GQY1XT001BT4GU,GQY1XT001ETX2X,GQY1XT001D6V8H,GQY1XT001D3UTZ,GQY1XT001CQOZO,GQY1XT001CRVSK,GQY1XT001CTW8U,GQY1XT001BNVBV,GQY1XT001BXJR3,GQY1XT001BQGZE,GQY1XT001A2RAP,GQY1XT001AMM4M,GQY1XT001AS520,GQY1XT001D3AEW,GQY1XT001EU1K5,GQY1XT001DTIA8,GQY1XT001EDIT5,GQY1XT001CBOH0,GQY1XT001E1IQE,GQY1XT001C6JFT,GQY1XT001EEO36,GQY1XT001EP7Q3,GQY1XT001D1HX3,GQY1XT001D7M1W,GQY1XT001DVHRV,GQY1XT001BYVYH,GQY1XT001AECHY,GQY1XT001CJ094,GQY1XT001BZYQB,GQY1XT001A16QO,GQY1XT001B1KKI,GQY1XT001BZMK9,GQY1XT001AT23P,GQY1XT001EF84W,GQY1XT001DVV5E,GQY1XT001DIUUR,GQY1XT001BT8LW,GQY1XT001CGWPR,GQY1XT001A0NBI,GQY1XT001DYKZ2,GQY1XT001CTVST,GQY1XT001CFGRH,GQY1XT001AJD4Z,GQY1XT001DGR88"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5GRM"; +secondCol = "GQY1XT001D5GRM,GQY1XT001EX8TB,GQY1XT001CK7AY,GQY1XT001DAWLG,GQY1XT001BA78U,GQY1XT001A1WMN,GQY1XT001AFUX9,GQY1XT001B99E8,GQY1XT001DJIPC,GQY1XT001D4D7L,GQY1XT001AKMHR,GQY1XT001AS06K,GQY1XT001AZZ2K,GQY1XT001A2937,GQY1XT001DBPMS,GQY1XT001AJ7O5,GQY1XT001C3Q9D,GQY1XT001CF3SI,GQY1XT001ANCC7,GQY1XT001BMEUC,GQY1XT001DBKGC,GQY1XT001CIH2D,GQY1XT001AQXWA,GQY1XT001A7VCN,GQY1XT001BWBYX,GQY1XT001DQ9AG,GQY1XT001AI8DJ,GQY1XT001B916D,GQY1XT001EAHAX,GQY1XT001EGFDN,GQY1XT001B4CNY,GQY1XT001BLWDJ,GQY1XT001B532F,GQY1XT001BU7SD,GQY1XT001BQBKX,GQY1XT001BC1LF,GQY1XT001C8HD6,GQY1XT001EK1IA,GQY1XT001B8XLV,GQY1XT001BZHN3,GQY1XT001CEDAW,GQY1XT001DDGL5,GQY1XT001EWMYM,GQY1XT001BO3UQ,GQY1XT001D7DHK,GQY1XT001ENLL3,GQY1XT001DVIA3,GQY1XT001C3YSA,GQY1XT001DI78U,GQY1XT001C2DLL,GQY1XT001BER2X,GQY1XT001ENJLY,GQY1XT001D3CDS,GQY1XT001CP7BI,GQY1XT001CL5MD,GQY1XT001C92E4,GQY1XT001ALBD2,GQY1XT001AGJVM,GQY1XT001AQZ8C,GQY1XT001DHWBW,GQY1XT001BVFZ6,GQY1XT001BZ7D4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR1VM"; +secondCol = "GQY1XT001DR1VM,GQY1XT001AD3IA,GQY1XT001BQ5C6,GQY1XT001DFPSF,GQY1XT001CWHZ1,GQY1XT001BERI2,GQY1XT001DA6DI,GQY1XT001AQLBL,GQY1XT001EO8LV,GQY1XT001DMUF4,GQY1XT001DGKSJ,GQY1XT001BV5KD,GQY1XT001BGZ0M,GQY1XT001CG0L6,GQY1XT001A47YY,GQY1XT001CD9YG,GQY1XT001BO3YY,GQY1XT001AVCOF,GQY1XT001EHV7L,GQY1XT001ASRQ9,GQY1XT001BZGF2,GQY1XT001BXIR9,GQY1XT001DGWBM,GQY1XT001CAWCW,GQY1XT001EFD4M,GQY1XT001C571U,GQY1XT001D05ZW,GQY1XT001CJTXA,GQY1XT001BPGI1,GQY1XT001EQ2SP,GQY1XT001DXBX4,GQY1XT001ETV0S,GQY1XT001EZ462,GQY1XT001EIIAD,GQY1XT001EN5WY,GQY1XT001EIIMU,GQY1XT001BGBEP,GQY1XT001D0VMC,GQY1XT001EPARC,GQY1XT001ED6PL,GQY1XT001DG3M2,GQY1XT001CV6UF,GQY1XT001CPLIT,GQY1XT001CMTJ6,GQY1XT001B1ZQZ,GQY1XT001A2SWW,GQY1XT001A313E,GQY1XT001A44XP,GQY1XT001DBS38,GQY1XT001BR1PO,GQY1XT001CA4H6,GQY1XT001DE0IO,GQY1XT001CHQBP,GQY1XT001BK7A2,GQY1XT001C6CSN,GQY1XT001BPNS5,GQY1XT001DU5UO,GQY1XT001A11C6,GQY1XT001CJDL4,GQY1XT001EO4N8,GQY1XT001DOPRZ,GQY1XT001EPL9N,GQY1XT001EMLB0,GQY1XT001BPDSR,GQY1XT001ES6F0,GQY1XT001AO4IC,GQY1XT001EDKOJ,GQY1XT001C569U,GQY1XT001BGVI1,GQY1XT001DMPOX,GQY1XT001CGEJ9,GQY1XT001DU70O,GQY1XT001EK97X,GQY1XT001ELV6S,GQY1XT001D5LNH,GQY1XT001D50LE,GQY1XT001BDD6I,GQY1XT001EE8L8,GQY1XT001DIK59,GQY1XT001CNIF5,GQY1XT001BLRAD,GQY1XT001EJSNM,GQY1XT001EIQ8D,GQY1XT001DZCE2,GQY1XT001DGV93,GQY1XT001BNDY2,GQY1XT001EH711,GQY1XT001A853B,GQY1XT001CNP7G,GQY1XT001BLLBR,GQY1XT001CA7K7,GQY1XT001C912J,GQY1XT001BI8WD,GQY1XT001COWGE,GQY1XT001EY06F,GQY1XT001EB2LM,GQY1XT001A1UXO,GQY1XT001AMM08,GQY1XT001EBN5N,GQY1XT001EGQHW,GQY1XT001B7FIY,GQY1XT001EV81W,GQY1XT001EUB8B,GQY1XT001DFK6Z,GQY1XT001DZ7YH,GQY1XT001BGTBX,GQY1XT001AJS4B,GQY1XT001ECNI2,GQY1XT001AO18W,GQY1XT001BLKYN,GQY1XT001CRM2U,GQY1XT001D07F1,GQY1XT001ENEZ9,GQY1XT001EWXF4,GQY1XT001CPIPU,GQY1XT001BZCOA,GQY1XT001AT5VW,GQY1XT001DBFJI,GQY1XT001EEGTM,GQY1XT001AJD01,GQY1XT001C0W07,GQY1XT001A3PAY,GQY1XT001EJRSH,GQY1XT001D5M1L,GQY1XT001CVB62,GQY1XT001DZ5YJ,GQY1XT001BZMZ0,GQY1XT001AMX8S,GQY1XT001AM0X4,GQY1XT001BYZ8U,GQY1XT001B36MA,GQY1XT001DTOIQ,GQY1XT001EP7I0,GQY1XT001DSNP1,GQY1XT001CXOCH,GQY1XT001BCQYE,GQY1XT001E5V01,GQY1XT001B31FL,GQY1XT001DV6L7,GQY1XT001A9YUS,GQY1XT001CEDW0,GQY1XT001CYRY3,GQY1XT001AMSO5,GQY1XT001C4H61,GQY1XT001D4Y9Q,GQY1XT001AL862,GQY1XT001DDDLK,GQY1XT001CWU3I,GQY1XT001DGLUV,GQY1XT001ASWR3,GQY1XT001EE7N1,GQY1XT001C85F5,GQY1XT001AWG73,GQY1XT001D93O6,GQY1XT001E1OTD,GQY1XT001EEADS,GQY1XT001EGIKI,GQY1XT001DMLMS,GQY1XT001CQLFG,GQY1XT001EQZQQ,GQY1XT001CWTAM,GQY1XT001DORR4,GQY1XT001AN94U,GQY1XT001CXT9O,GQY1XT001A2BGJ,GQY1XT001DRP22,GQY1XT001DN350,GQY1XT001EU53K,GQY1XT001BPFQP,GQY1XT001BK8M1,GQY1XT001DY2QY,GQY1XT001BMQFD,GQY1XT001DQNWH,GQY1XT001APSGM,GQY1XT001ET0F8,GQY1XT001E32MO,GQY1XT001DUZQI,GQY1XT001CVKXW,GQY1XT001CQ6KU,GQY1XT001DUF4G,GQY1XT001BTZJX,GQY1XT001AUB5C,GQY1XT001AVAGN,GQY1XT001C2HGF,GQY1XT001AVS49,GQY1XT001BXC8P,GQY1XT001BEOJE,GQY1XT001DD4VL,GQY1XT001BRC4T,GQY1XT001ESL9E,GQY1XT001EDRM5,GQY1XT001CUANH,GQY1XT001BZLIT,GQY1XT001B14K0,GQY1XT001APWM5,GQY1XT001BRHOE,GQY1XT001DE73J,GQY1XT001CNHV7,GQY1XT001CPRQ2,GQY1XT001BTI6Z,GQY1XT001BVRY2,GQY1XT001BMY65,GQY1XT001EVST5,GQY1XT001BSG1O,GQY1XT001DB9DC,GQY1XT001DDNEJ,GQY1XT001DEYM0,GQY1XT001DASIQ,GQY1XT001ANJSO,GQY1XT001A52BG,GQY1XT001E4NE8,GQY1XT001DN4AO,GQY1XT001A2H1A,GQY1XT001DNPVN,GQY1XT001BS2DW,GQY1XT001C80NX,GQY1XT001EDZ1G,GQY1XT001DNOVP,GQY1XT001BAFIH,GQY1XT001C9FPV,GQY1XT001D736G,GQY1XT001AUBOK,GQY1XT001DE5VG,GQY1XT001BYHEI,GQY1XT001BCWBQ,GQY1XT001AUEQ5,GQY1XT001A2SZN,GQY1XT001B7TBF,GQY1XT001BTEOM,GQY1XT001B4ED3,GQY1XT001AMLOI,GQY1XT001DWK7L,GQY1XT001A8NQJ,GQY1XT001C6I1A,GQY1XT001BKDP2,GQY1XT001BJY97,GQY1XT001CQ3AT,GQY1XT001AXLJD,GQY1XT001BTKBC,GQY1XT001EXFE1,GQY1XT001CNR0Q,GQY1XT001CG7BI,GQY1XT001C2646,GQY1XT001EBQS8,GQY1XT001DXHFT,GQY1XT001BY7SL,GQY1XT001AIFBT,GQY1XT001CTFBL,GQY1XT001EZAED,GQY1XT001C9GNE,GQY1XT001COFY5,GQY1XT001AU5NP,GQY1XT001EBF03,GQY1XT001D087V,GQY1XT001AGTH6,GQY1XT001EIRGD,GQY1XT001DK1PI,GQY1XT001D093O,GQY1XT001D6WBS,GQY1XT001DJA50,GQY1XT001DCD1L,GQY1XT001AIWC2,GQY1XT001C90DD,GQY1XT001D9X27,GQY1XT001EE6TT,GQY1XT001B37YR,GQY1XT001ARR15,GQY1XT001D8GKT,GQY1XT001B0BDH,GQY1XT001CIBER,GQY1XT001C4ICP,GQY1XT001BT41Y,GQY1XT001C7S8N,GQY1XT001DT5DV,GQY1XT001D2CI1,GQY1XT001EIYXR,GQY1XT001AWJCK,GQY1XT001CTRX5,GQY1XT001ENALO,GQY1XT001DMFG9,GQY1XT001B7SZV,GQY1XT001DNHIH,GQY1XT001AGTD6,GQY1XT001CVX7V,GQY1XT001EERFZ,GQY1XT001AWI12,GQY1XT001B5R0Z,GQY1XT001DVLYP,GQY1XT001EWOD5,GQY1XT001DCJF2,GQY1XT001DRK73,GQY1XT001CEWBL,GQY1XT001ETS9S,GQY1XT001EFOW6,GQY1XT001ERFD6,GQY1XT001AROBM,GQY1XT001A6L3D,GQY1XT001C21CT,GQY1XT001AXIVT,GQY1XT001AH8O9,GQY1XT001BX6RG,GQY1XT001AZD3X,GQY1XT001CXQFF,GQY1XT001CK7T5,GQY1XT001ARB9I,GQY1XT001EK67U,GQY1XT001D98IK,GQY1XT001BX8TS,GQY1XT001CUOED,GQY1XT001DJGG1,GQY1XT001B7C6B,GQY1XT001CXXDC,GQY1XT001A4EZY,GQY1XT001EO518,GQY1XT001EY8M4,GQY1XT001DSPX6,GQY1XT001CEKCZ,GQY1XT001BBLMP,GQY1XT001DAD4Q,GQY1XT001EYOQT,GQY1XT001DS86U,GQY1XT001D13G1,GQY1XT001CSSXO,GQY1XT001C9EGM,GQY1XT001C7AW7,GQY1XT001C4A1L,GQY1XT001BB9AD,GQY1XT001B7VST,GQY1XT001A3XVL,GQY1XT001DN5PC,GQY1XT001DCC3Y,GQY1XT001E1FMK,GQY1XT001BP52T,GQY1XT001BX9T1,GQY1XT001EIJTE,GQY1XT001CV5AK,GQY1XT001C1TP4,GQY1XT001EFIW6,GQY1XT001ECNOO,GQY1XT001DBHAG,GQY1XT001EFTNX,GQY1XT001BZV2J,GQY1XT001D9PFS,GQY1XT001CROBE,GQY1XT001C4FWW,GQY1XT001C4ALJ,GQY1XT001D8HXJ,GQY1XT001DC24V,GQY1XT001ETCLP,GQY1XT001CCH9E,GQY1XT001EW7XP,GQY1XT001CZ6DJ,GQY1XT001CLD0P,GQY1XT001C2C5R,GQY1XT001BA7F6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA2S8"; +secondCol = "GQY1XT001BA2S8,GQY1XT001BXJ1Q,GQY1XT001B1D7N,GQY1XT001CM71Q,GQY1XT001CABFH,GQY1XT001AS9J4,GQY1XT001DBMPB,GQY1XT001AF70P,GQY1XT001AHBNL,GQY1XT001DDL5I,GQY1XT001DM51Q,GQY1XT001B23Z1,GQY1XT001C69CF,GQY1XT001DKDDY,GQY1XT001A8PPE,GQY1XT001A4HAV,GQY1XT001ARI86,GQY1XT001A2EKF,GQY1XT001CLVUK,GQY1XT001C42B7,GQY1XT001EI32H,GQY1XT001CVTCJ,GQY1XT001D6X3C,GQY1XT001BC9T5,GQY1XT001C3C60,GQY1XT001DCWCS,GQY1XT001DW2QG,GQY1XT001EGVSM,GQY1XT001C1Y9B,GQY1XT001D19YG,GQY1XT001DAKM7,GQY1XT001AU66B,GQY1XT001DGTFO,GQY1XT001BFXD0,GQY1XT001BZKWA,GQY1XT001D8Z3F,GQY1XT001B4STO,GQY1XT001AEA1T,GQY1XT001BCYW2,GQY1XT001BAN6N,GQY1XT001DRNCJ,GQY1XT001EAP97,GQY1XT001DPXAU,GQY1XT001DII41,GQY1XT001CG4S6,GQY1XT001CCY0A,GQY1XT001C5WIB,GQY1XT001B7964,GQY1XT001AZ3ZQ,GQY1XT001A039O,GQY1XT001B0RIJ,GQY1XT001CTOBT,GQY1XT001BUH3G,GQY1XT001BCVVL,GQY1XT001CNMDB,GQY1XT001B6Q22,GQY1XT001CBMLW,GQY1XT001EYE01,GQY1XT001A9KML,GQY1XT001A3ZE3,GQY1XT001ETREN,GQY1XT001BDBPV,GQY1XT001BZB2M,GQY1XT001B5EWD,GQY1XT001BIIG8,GQY1XT001A2DRW,GQY1XT001EKMP5,GQY1XT001CYMB6,GQY1XT001CDXO0,GQY1XT001EQGDD,GQY1XT001ASZUS,GQY1XT001DVQOI,GQY1XT001CYMTD,GQY1XT001DGA80,GQY1XT001A9SJC,GQY1XT001BYE5C,GQY1XT001EGW72,GQY1XT001AINEM,GQY1XT001EFCC5,GQY1XT001DOKZE,GQY1XT001B8VQJ,GQY1XT001EIDJ8,GQY1XT001CSCQJ,GQY1XT001ASBPD,GQY1XT001BWL86,GQY1XT001DV7GQ,GQY1XT001ETRLR,GQY1XT001DRWKK,GQY1XT001C9OUV,GQY1XT001C3W46,GQY1XT001AXNDE,GQY1XT001BQRN9,GQY1XT001E3GB8,GQY1XT001AMJNV,GQY1XT001BBRKI,GQY1XT001BA17G,GQY1XT001AI4PN,GQY1XT001CFZAW,GQY1XT001B1PZO,GQY1XT001EWYSA,GQY1XT001BA68Q,GQY1XT001CMQGD,GQY1XT001BXQKL,GQY1XT001BDMFS,GQY1XT001C2CFU,GQY1XT001ET68J,GQY1XT001EV8M1,GQY1XT001B1GC3,GQY1XT001DNCEY,GQY1XT001C3UQ6,GQY1XT001EWQ4I,GQY1XT001ALZ3P,GQY1XT001CT52P,GQY1XT001EX00D,GQY1XT001B2ZSO,GQY1XT001C6FU9,GQY1XT001BNZ35,GQY1XT001AGWFR,GQY1XT001AWAKN,GQY1XT001DDT3I,GQY1XT001BSLXU,GQY1XT001EVUQA,GQY1XT001BHIIM,GQY1XT001BVHII,GQY1XT001AUN8I,GQY1XT001CTT42,GQY1XT001CZK09,GQY1XT001D7U0T,GQY1XT001BE4ML,GQY1XT001DS9PP,GQY1XT001CETKO,GQY1XT001DGK06,GQY1XT001D0L2Q,GQY1XT001E20GG,GQY1XT001C50KP,GQY1XT001CIQHQ,GQY1XT001BYHD5,GQY1XT001BOYLZ,GQY1XT001DEYL0,GQY1XT001D4C00,GQY1XT001CQR00,GQY1XT001AO3GI,GQY1XT001A5ZKW,GQY1XT001BX403,GQY1XT001ESJ2A,GQY1XT001DBXZP,GQY1XT001C9L2O,GQY1XT001AY3O5,GQY1XT001B0FTP,GQY1XT001B2D25,GQY1XT001EKHZ1,GQY1XT001CCY6M,GQY1XT001EXBNZ,GQY1XT001AZ8J2,GQY1XT001BO88T,GQY1XT001DC7N3,GQY1XT001CI2Q5,GQY1XT001DYTJA,GQY1XT001D5GB8,GQY1XT001DCUK7,GQY1XT001BT8Q5,GQY1XT001EKAC5,GQY1XT001DJJCV,GQY1XT001CPYC5,GQY1XT001A88EA,GQY1XT001BYC0O,GQY1XT001DUY90,GQY1XT001EL08C,GQY1XT001CNYVD,GQY1XT001B8MK7,GQY1XT001B0YE9,GQY1XT001E0J5U,GQY1XT001ECG3C,GQY1XT001AG99V,GQY1XT001B02U6,GQY1XT001AO5K3,GQY1XT001CM7UV,GQY1XT001BFK3C,GQY1XT001BQNJJ,GQY1XT001AUUM0,GQY1XT001AZX99,GQY1XT001AW688,GQY1XT001ETC73,GQY1XT001CCYQ5,GQY1XT001D3XEQ,GQY1XT001B87FF,GQY1XT001D8BVV,GQY1XT001CTWSL,GQY1XT001CNLS3,GQY1XT001C7HQW,GQY1XT001DI7W4,GQY1XT001CSKJC,GQY1XT001AJQG9,GQY1XT001EVGYX,GQY1XT001B4L80,GQY1XT001A8I4S,GQY1XT001BTR9W,GQY1XT001CA4XS,GQY1XT001CYO8J,GQY1XT001E34E4,GQY1XT001EJR42,GQY1XT001D44Y4,GQY1XT001ETIOP,GQY1XT001B4PI7,GQY1XT001CKBOL,GQY1XT001AOJSS,GQY1XT001ATTWX,GQY1XT001D2Y3Z,GQY1XT001CGE3B,GQY1XT001C3ROY,GQY1XT001DK1ZF,GQY1XT001DBI2K,GQY1XT001EUABD,GQY1XT001DFXE8,GQY1XT001CWHK5,GQY1XT001CELVG,GQY1XT001BD5F7,GQY1XT001ALF6X,GQY1XT001EY8IO,GQY1XT001EOSUD,GQY1XT001BF6QY,GQY1XT001EFMKJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGASM"; +secondCol = "GQY1XT001EGASM,GQY1XT001DLMXU,GQY1XT001BZ11V,GQY1XT001DZXTY,GQY1XT001EGUW2,GQY1XT001A3QKV,GQY1XT001CEOTF,GQY1XT001CPUKQ,GQY1XT001DGQYV,GQY1XT001C885Y,GQY1XT001BIDSP,GQY1XT001CZJFK,GQY1XT001EC5F4,GQY1XT001CH57W,GQY1XT001BLYQ4,GQY1XT001BP27B,GQY1XT001DXK49,GQY1XT001C0HTG,GQY1XT001AMV2E,GQY1XT001A9FJ2,GQY1XT001CZQWA,GQY1XT001A02RJ,GQY1XT001DTNIF,GQY1XT001BL9GB,GQY1XT001ATKAU,GQY1XT001AG640,GQY1XT001D1R1X,GQY1XT001DLFVP,GQY1XT001B42KU,GQY1XT001BXL89,GQY1XT001DHDNO,GQY1XT001CSV5B,GQY1XT001DU9M6,GQY1XT001BZW4R,GQY1XT001BBQE9,GQY1XT001DAQ2Q,GQY1XT001BUNNG,GQY1XT001AT2E9,GQY1XT001D4MDU,GQY1XT001DK9WR,GQY1XT001C982K,GQY1XT001BEZ41,GQY1XT001C6RNC,GQY1XT001ALWLR,GQY1XT001CQ74N,GQY1XT001DU83T,GQY1XT001B1UWB,GQY1XT001CDWA2,GQY1XT001D6OJD,GQY1XT001EFKMJ,GQY1XT001A5MFV,GQY1XT001E3GNH,GQY1XT001DZ6EG,GQY1XT001CKH9G,GQY1XT001DWQCF,GQY1XT001DSW3O,GQY1XT001B49XM,GQY1XT001EX1BA,GQY1XT001CD5BB,GQY1XT001A5WD9,GQY1XT001EQQT7,GQY1XT001D683X,GQY1XT001A4EXB,GQY1XT001BKA5V,GQY1XT001CCGEP,GQY1XT001B7GIM,GQY1XT001DFN5Y,GQY1XT001CGZ9Y,GQY1XT001C1K5I,GQY1XT001DH43P,GQY1XT001D8RDE,GQY1XT001AOOZS,GQY1XT001BAH7X,GQY1XT001CBYCU,GQY1XT001EGZRF,GQY1XT001CZOGR,GQY1XT001ANB6B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKUTY"; +secondCol = "GQY1XT001BKUTY,GQY1XT001ESD0Q,GQY1XT001CAACY,GQY1XT001A8HLC,GQY1XT001C4Q08,GQY1XT001A1579,GQY1XT001DR7O2,GQY1XT001AFVUW,GQY1XT001EEP0N,GQY1XT001AY5JL,GQY1XT001CM8QF,GQY1XT001BMSN6,GQY1XT001D2YBR,GQY1XT001CFGXH,GQY1XT001ALEI3,GQY1XT001DV36J,GQY1XT001BJVFV,GQY1XT001EBUQ0,GQY1XT001D187C,GQY1XT001DME0K,GQY1XT001EXZI7,GQY1XT001C1W9G,GQY1XT001AUB2K,GQY1XT001DVM0I,GQY1XT001B3RCO,GQY1XT001DHGGE,GQY1XT001AU35T,GQY1XT001CRZ5K,GQY1XT001DPUM2,GQY1XT001DTY5B,GQY1XT001DJAT8,GQY1XT001D9SAH,GQY1XT001CCGMV,GQY1XT001AHRED,GQY1XT001B9ZDC,GQY1XT001A5K9M,GQY1XT001EKQZB,GQY1XT001C0S20,GQY1XT001CUY2N,GQY1XT001DPLTP,GQY1XT001D9WRG,GQY1XT001CWVAG,GQY1XT001CWW72,GQY1XT001CDR5Q,GQY1XT001DP791,GQY1XT001BOXE7,GQY1XT001EQ6J0,GQY1XT001DIPST,GQY1XT001BAI5M,GQY1XT001AVKR2,GQY1XT001B6ZLS,GQY1XT001CT1HG,GQY1XT001BC2AV,GQY1XT001AFN0G,GQY1XT001CYIDP,GQY1XT001DUW4H,GQY1XT001D57YZ,GQY1XT001DW8PI,GQY1XT001E5AD3,GQY1XT001A8AK6,GQY1XT001EBYFD,GQY1XT001CLVVM,GQY1XT001AJWWE,GQY1XT001DXQAG,GQY1XT001A98QW,GQY1XT001DOQ94,GQY1XT001DDL9K,GQY1XT001CNHO1,GQY1XT001EH6OA,GQY1XT001C8W5S,GQY1XT001ANCMJ,GQY1XT001D0BKL,GQY1XT001D9Z7G,GQY1XT001AZKXJ,GQY1XT001DN7WV,GQY1XT001BTXDQ,GQY1XT001BNK13,GQY1XT001EPNKL,GQY1XT001AHLBG,GQY1XT001ANONK,GQY1XT001DGB8N,GQY1XT001A437K,GQY1XT001ENLCB,GQY1XT001CAGTC,GQY1XT001COZMT,GQY1XT001DLEFM,GQY1XT001CBMVU,GQY1XT001CHOS1,GQY1XT001CELQX,GQY1XT001AEZF2,GQY1XT001CFIGZ,GQY1XT001A7C34,GQY1XT001ANAKY,GQY1XT001DMR4G,GQY1XT001D3C1B,GQY1XT001BHR46,GQY1XT001EKNOU,GQY1XT001EPX5Y,GQY1XT001BF06Q,GQY1XT001CCDIK,GQY1XT001B6RMZ,GQY1XT001AGAB3,GQY1XT001BRTDI,GQY1XT001CK17O,GQY1XT001D5BBC,GQY1XT001AU5Z7,GQY1XT001E0QKI,GQY1XT001B169K,GQY1XT001DMFCY,GQY1XT001DR0MD,GQY1XT001AL6DC,GQY1XT001CPR9T,GQY1XT001D2LK2,GQY1XT001D5N2L,GQY1XT001C8924,GQY1XT001EDO5M,GQY1XT001CANFM,GQY1XT001BGJR9,GQY1XT001DSEMQ,GQY1XT001B8AUD,GQY1XT001AY5O2,GQY1XT001B0X9X,GQY1XT001AKZCJ,GQY1XT001BS3LS,GQY1XT001DPL84,GQY1XT001C7TFC,GQY1XT001B9CJO,GQY1XT001BENBD,GQY1XT001BRHZ3,GQY1XT001EWV7Y,GQY1XT001CVK72,GQY1XT001CSLWJ,GQY1XT001DBPNL,GQY1XT001BVC3V,GQY1XT001CP0CM,GQY1XT001C52GS,GQY1XT001CIRU3,GQY1XT001DH271,GQY1XT001CQBT5,GQY1XT001A20IP,GQY1XT001EP45W,GQY1XT001C7349,GQY1XT001DP6JQ,GQY1XT001CF6GZ,GQY1XT001A9BLJ,GQY1XT001C0R24,GQY1XT001B4IWL,GQY1XT001D8T5X,GQY1XT001DV6GX,GQY1XT001AIO65,GQY1XT001CUK2B,GQY1XT001CAO3C,GQY1XT001BM069,GQY1XT001AR34A,GQY1XT001CEADB,GQY1XT001AWCJJ,GQY1XT001BHGNP,GQY1XT001ATX57,GQY1XT001CN0F7,GQY1XT001CECI0,GQY1XT001EAEB9,GQY1XT001APBC1,GQY1XT001EW1F2,GQY1XT001AMLHC,GQY1XT001BJEAN,GQY1XT001A76PF,GQY1XT001A56QX,GQY1XT001CW62K,GQY1XT001BJIKS,GQY1XT001C5IRM,GQY1XT001B2XJQ,GQY1XT001BV1UR,GQY1XT001B15Q2,GQY1XT001AU36P,GQY1XT001BCNPZ,GQY1XT001B950W,GQY1XT001C3HCA,GQY1XT001D7AX6,GQY1XT001BCD5L,GQY1XT001EZM6O,GQY1XT001BOQVT,GQY1XT001D7EB6,GQY1XT001BA7LZ,GQY1XT001EBH2F,GQY1XT001AKHZ2,GQY1XT001B5DAB,GQY1XT001E0VFM,GQY1XT001DNNYO,GQY1XT001D3I34,GQY1XT001ATU4S,GQY1XT001BFTMC,GQY1XT001BV0M5,GQY1XT001DIMCX,GQY1XT001EIG3H,GQY1XT001BKG6S,GQY1XT001BA19H,GQY1XT001BKN0H,GQY1XT001BUYQG,GQY1XT001EADB3,GQY1XT001C42MG,GQY1XT001A1UEF,GQY1XT001AOVCB,GQY1XT001CNX25,GQY1XT001AQ2E6,GQY1XT001B012M,GQY1XT001DUXYE,GQY1XT001DOVBY,GQY1XT001BSU5R,GQY1XT001A9XYB,GQY1XT001B93TD,GQY1XT001EI0QW,GQY1XT001B6TX9,GQY1XT001B55NI,GQY1XT001CGLUN,GQY1XT001CWIP6,GQY1XT001EN1HG,GQY1XT001DMWL6,GQY1XT001B53CP,GQY1XT001CIPZ5,GQY1XT001DSJUX,GQY1XT001ER172,GQY1XT001E02JG,GQY1XT001BRPW4,GQY1XT001DY9YT,GQY1XT001BBTJE,GQY1XT001DAIDZ,GQY1XT001BJX9T,GQY1XT001BKINV,GQY1XT001CM576,GQY1XT001BT9ZX,GQY1XT001DUZ14,GQY1XT001EJOX0,GQY1XT001DH1QO,GQY1XT001BDNZ8,GQY1XT001A5DDE,GQY1XT001E0HSF,GQY1XT001BK42Z,GQY1XT001CT2QF,GQY1XT001CW39F,GQY1XT001ER8YD,GQY1XT001E1D97,GQY1XT001DSPF5,GQY1XT001BJW4P,GQY1XT001B5Z7C,GQY1XT001CDBQJ,GQY1XT001CAQUR,GQY1XT001CQI2Z,GQY1XT001C2KYV,GQY1XT001EJOMJ,GQY1XT001BKUHR,GQY1XT001CFZ50,GQY1XT001DRNSP,GQY1XT001DQLMC,GQY1XT001D7Y1G,GQY1XT001CSZ22,GQY1XT001EG149,GQY1XT001BSTUW,GQY1XT001A80NX,GQY1XT001DDMQR,GQY1XT001B2R12,GQY1XT001AJECK,GQY1XT001DBDJN,GQY1XT001CPWWJ,GQY1XT001BTHXZ,GQY1XT001CHUOJ,GQY1XT001A501U,GQY1XT001EMXET,GQY1XT001AIP80,GQY1XT001A3SJW,GQY1XT001DQAGN,GQY1XT001CNX5Q,GQY1XT001CKBSZ,GQY1XT001C05H6,GQY1XT001B3O7X,GQY1XT001CTR77,GQY1XT001EWGXL,GQY1XT001D82DN,GQY1XT001CELOD,GQY1XT001B6OSO,GQY1XT001DFWUP,GQY1XT001CVBF5,GQY1XT001DKKTE,GQY1XT001A6TKN,GQY1XT001B68N8,GQY1XT001BKO2Q,GQY1XT001CJT43,GQY1XT001A71VC,GQY1XT001EKF9M,GQY1XT001B7ES9,GQY1XT001EVT8E,GQY1XT001E2Y49,GQY1XT001DG7EL,GQY1XT001D3QVQ,GQY1XT001A6W5M,GQY1XT001A6OYT,GQY1XT001CGNH1,GQY1XT001DOVTJ,GQY1XT001AXKKN,GQY1XT001BF408,GQY1XT001DPOM1,GQY1XT001AN8ZL,GQY1XT001ELUUV,GQY1XT001CZQPW,GQY1XT001CQOLA,GQY1XT001DPJAF,GQY1XT001B2RHT,GQY1XT001BAB74,GQY1XT001BDKMF,GQY1XT001BGODC,GQY1XT001DG0ZA,GQY1XT001DG10P,GQY1XT001EASXH,GQY1XT001BL5Y1,GQY1XT001CJ6V6,GQY1XT001D4LIX,GQY1XT001DKDNN,GQY1XT001DKQHE,GQY1XT001DDMAB,GQY1XT001CTGEL,GQY1XT001BAFG1,GQY1XT001C0Q27,GQY1XT001CW154,GQY1XT001BSLN3,GQY1XT001EOPMO,GQY1XT001AE3CS,GQY1XT001AXH7E,GQY1XT001C53SL,GQY1XT001DFQFF,GQY1XT001AX48E,GQY1XT001B3YNN,GQY1XT001COXVP,GQY1XT001BE2VA,GQY1XT001B0IEH,GQY1XT001AS8BT,GQY1XT001EXCSR,GQY1XT001CMMAU,GQY1XT001EF7VL,GQY1XT001DZ636,GQY1XT001BXW1A,GQY1XT001BA5P5,GQY1XT001C7GA0,GQY1XT001DPUT5,GQY1XT001AFID1,GQY1XT001AQAKC,GQY1XT001EVEH3,GQY1XT001AGQZN,GQY1XT001EPIM4,GQY1XT001D7E7Z,GQY1XT001BJ3Q4,GQY1XT001CJLU4,GQY1XT001A9HD6,GQY1XT001A22HN,GQY1XT001ATCE0,GQY1XT001A3DPJ,GQY1XT001AO5R7,GQY1XT001D0AVG,GQY1XT001EFXGA,GQY1XT001CRI82,GQY1XT001DAJ82,GQY1XT001BAOZO,GQY1XT001A66H1,GQY1XT001COC4B,GQY1XT001APJ15,GQY1XT001CROUY,GQY1XT001DU3VS,GQY1XT001BRLVQ,GQY1XT001CCO5P,GQY1XT001AM6ZF,GQY1XT001A4S3P,GQY1XT001CQ6UV,GQY1XT001BKTFP,GQY1XT001E0AON,GQY1XT001AVGLF,GQY1XT001C8M8V,GQY1XT001ELIKX,GQY1XT001E29QZ,GQY1XT001BNVMB,GQY1XT001DLIU9,GQY1XT001EYJ92,GQY1XT001CRMUO,GQY1XT001CX5WZ,GQY1XT001COHSS,GQY1XT001C3XSW,GQY1XT001APD5E,GQY1XT001CACB6,GQY1XT001CI3KG,GQY1XT001CA7L0,GQY1XT001CGVBE,GQY1XT001CTSUC,GQY1XT001EGVVH,GQY1XT001AUGYG,GQY1XT001BC439,GQY1XT001DH8XG,GQY1XT001A1IJM,GQY1XT001BFXGH,GQY1XT001BKHG4,GQY1XT001B7DP1,GQY1XT001EBTRT,GQY1XT001DHJ99,GQY1XT001CMEU6,GQY1XT001DVKNH,GQY1XT001C2GAI,GQY1XT001BMSW9,GQY1XT001CVANF,GQY1XT001EFJRZ,GQY1XT001CK2LH,GQY1XT001BZLV2,GQY1XT001EQLWZ,GQY1XT001C4IFA,GQY1XT001EYJO4,GQY1XT001DG9TA,GQY1XT001AK8H8,GQY1XT001CSC5O,GQY1XT001CO2CZ,GQY1XT001ETIBJ,GQY1XT001DQOF8,GQY1XT001EK98W,GQY1XT001EE3MU,GQY1XT001DU7O2,GQY1XT001D9DAQ,GQY1XT001C6PSA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFH3B"; +secondCol = 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B43LM,GQY1XT001CSRRZ,GQY1XT001BWFLC,GQY1XT001ETU6X,GQY1XT001A2CCM,GQY1XT001BFW9Z,GQY1XT001A2O6G,GQY1XT001AP0UX,GQY1XT001DE8IO,GQY1XT001EM9O3,GQY1XT001CW4DI,GQY1XT001EOI4X,GQY1XT001ENAYS,GQY1XT001ENTV5,GQY1XT001A27BU,GQY1XT001D0JYJ,GQY1XT001B7F6Q,GQY1XT001D1CR4,GQY1XT001B5419,GQY1XT001AR1MP,GQY1XT001CVCXC,GQY1XT001EANU0,GQY1XT001DZHWW,GQY1XT001CPB49,GQY1XT001DRUE2,GQY1XT001AOWQ8,GQY1XT001EH5NK,GQY1XT001AM0CB,GQY1XT001CX897,GQY1XT001AZ8JZ,GQY1XT001EOS2I,GQY1XT001D42YB,GQY1XT001EKUTA,GQY1XT001DSBNQ,GQY1XT001CDDK7,GQY1XT001EKHAM,GQY1XT001C8UPA,GQY1XT001C5V83,GQY1XT001BXEU7,GQY1XT001C4VP2,GQY1XT001DDHU5,GQY1XT001BCZBQ,GQY1XT001EHSZ0,GQY1XT001AOK5J,GQY1XT001ESKXI,GQY1XT001AFIO7,GQY1XT001DQ7PW,GQY1XT001AVJYC,GQY1XT001A2R2Z,GQY1XT001BRON2,GQY1XT001BYPTF,GQY1XT001AIN2S,GQY1XT001AIRNK,GQY1XT001BVYJN,GQY1XT001B2YQU,GQY1XT001ESY1L,GQY1XT001DTZNX,GQY1XT001AQNA8,GQY1XT001BWGJ8,GQY1XT001DELRK,GQY1XT001D5P54,GQY1XT001CPAHM,GQY1XT001BT454,GQY1XT001EW6JS,GQY1XT001EDBHS,GQY1XT001AZXYN,GQY1XT001B6PYH,GQY1XT001EJAAF,GQY1XT001BN0CJ,GQY1XT001DJW42,GQY1XT001DEDF5,GQY1XT001A8M3T,GQY1XT001BD8DE,GQY1XT001CD546,GQY1XT001DURK0,GQY1XT001ENQXA,GQY1XT001A6HII,GQY1XT001A6KSH,GQY1XT001A56EE,GQY1XT001D9JSZ,GQY1XT001D259P,GQY1XT001EC2T5,GQY1XT001C6ZFL,GQY1XT001C24L4,GQY1XT001B2WNN,GQY1XT001C469G,GQY1XT001DE4AN,GQY1XT001ASZLY,GQY1XT001ET2RQ,GQY1XT001DDRSU,GQY1XT001ARYE2,GQY1XT001EQA6W,GQY1XT001BT0QD,GQY1XT001AZ3V1,GQY1XT001DYK9H,GQY1XT001DYTAT,GQY1XT001E14IP,GQY1XT001CJY09,GQY1XT001EJ89K,GQY1XT001DPSQI,GQY1XT001ETTO0,GQY1XT001BOAIS,GQY1XT001BSHAO,GQY1XT001CV2WE,GQY1XT001C3K4S,GQY1XT001B3UNS,GQY1XT001BEQXA,GQY1XT001CF2ZT,GQY1XT001CVE84,GQY1XT001C2PO1,GQY1XT001DUABK,GQY1XT001EYT3X,GQY1XT001E1YSH,GQY1XT001B0LXW,GQY1XT001A2GX6,GQY1XT001COIHS,GQY1XT001B6YVV,GQY1XT001BRTYN,GQY1XT001AJTQO,GQY1XT001C5Q8X,GQY1XT001EYTYD,GQY1XT001EAG2S,GQY1XT001BSUK6,GQY1XT001BVHJT,GQY1XT001DMEHH,GQY1XT001DFTOS,GQY1XT001BT3EV,GQY1XT001A24F0,GQY1XT001AMHQA,GQY1XT001B7U8W,GQY1XT001EVP47,GQY1XT001EG03F,GQY1XT001DFXQZ,GQY1XT001EZLEA,GQY1XT001C2W08,GQY1XT001E1XU8,GQY1XT001E0FZ1,GQY1XT001E25GU,GQY1XT001DMZEX,GQY1XT001BD3G5,GQY1XT001DTGVA,GQY1XT001BW1W6,GQY1XT001A9WWU,GQY1XT001ENXPP,GQY1XT001CY6SU,GQY1XT001D9TG7,GQY1XT001CFPDP,GQY1XT001AE82Y,GQY1XT001C7XHP,GQY1XT001DFFML,GQY1XT001CIKX4,GQY1XT001EXTTT,GQY1XT001BCUQG,GQY1XT001AVF8O,GQY1XT001EH2Z7,GQY1XT001C04BQ,GQY1XT001CY2GL,GQY1XT001D9VMQ,GQY1XT001E3STF,GQY1XT001AI7IN,GQY1XT001ELNGT,GQY1XT001EQV3G,GQY1XT001C0N8B,GQY1XT001B3KZW,GQY1XT001EZQJU,GQY1XT001B18TC,GQY1XT001BSLJW,GQY1XT001DO45Q,GQY1XT001BMR90,GQY1XT001DTNEJ,GQY1XT001DAVHX,GQY1XT001DR8O0,GQY1XT001DYZHK,GQY1XT001C1A7T,GQY1XT001DGJ5W,GQY1XT001DDST2,GQY1XT001ARENA,GQY1XT001AP4ZB,GQY1XT001BWINY,GQY1XT001BD2Z6,GQY1XT001DS73I,GQY1XT001ANGN4,GQY1XT001ELEHL,GQY1XT001EH4UJ,GQY1XT001BPYOU,GQY1XT001ED2JM,GQY1XT001BUICQ,GQY1XT001BZODH,GQY1XT001DDKJY,GQY1XT001BYOVB,GQY1XT001B7JMA,GQY1XT001A9E29,GQY1XT001CJ105,GQY1XT001DSWLJ,GQY1XT001DOP9R,GQY1XT001BHLJC,GQY1XT001DQ006,GQY1XT001EI22M,GQY1XT001D17IW,GQY1XT001CLUTX,GQY1XT001AEWSQ,GQY1XT001BEFSN,GQY1XT001D03X8,GQY1XT001EIPUK,GQY1XT001CY3GM,GQY1XT001C1J9H,GQY1XT001A68RI,GQY1XT001BG8RY,GQY1XT001B52AP,GQY1XT001BSR7W,GQY1XT001DTQON,GQY1XT001C4YBD,GQY1XT001C0M5V,GQY1XT001AY5NP,GQY1XT001DTALA,GQY1XT001DBVFB,GQY1XT001BWRKQ,GQY1XT001AD9MC,GQY1XT001EJS1O,GQY1XT001EJ85X,GQY1XT001EJFWH,GQY1XT001CJXXD,GQY1XT001E1NQY,GQY1XT001C8U5X,GQY1XT001A4WJ5,GQY1XT001DZH7V,GQY1XT001DCDDY,GQY1XT001BA4TY,GQY1XT001CIXSL,GQY1XT001CQ6S8,GQY1XT001BTD5Y,GQY1XT001EA8GR,GQY1XT001AXKA6,GQY1XT001CMLH3,GQY1XT001AMV0Q,GQY1XT001ANMWJ,GQY1XT001BDPMK,GQY1XT001BVR33,GQY1XT001BKSQE,GQY1XT001C7E4V,GQY1XT001CV67T,GQY1XT001DMSOC,GQY1XT001CVGG3,GQY1XT001DGPYB,GQY1XT001DHUBW,GQY1XT001CKL2Z,GQY1XT001E400K,GQY1XT001D1NMB,GQY1XT001CMFZQ,GQY1XT001BMG7Y,GQY1XT001EQT9R,GQY1XT001CA0Q0,GQY1XT001D9JKK,GQY1XT001B0A1I,GQY1XT001A0UFC,GQY1XT001CWJN3,GQY1XT001CC8EM,GQY1XT001EYMYD,GQY1XT001C24VX,GQY1XT001CFROF,GQY1XT001AQET7,GQY1XT001BNSNH,GQY1XT001ANNM1,GQY1XT001D7587,GQY1XT001B9XZF,GQY1XT001EUME1,GQY1XT001CFERO,GQY1XT001DZQ9J,GQY1XT001E6BB5,GQY1XT001DS93G,GQY1XT001CVFL5,GQY1XT001EVN7S,GQY1XT001B7S3R,GQY1XT001CFB9P,GQY1XT001C2JTG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPI4U"; +secondCol = "GQY1XT001BPI4U,GQY1XT001B586U,GQY1XT001D4PH4,GQY1XT001DHY01,GQY1XT001AL3BU,GQY1XT001DD3DX,GQY1XT001CL9OZ,GQY1XT001D8KD6,GQY1XT001CJMBP,GQY1XT001C949O,GQY1XT001EF3CF,GQY1XT001BJPMB,GQY1XT001CS1NV,GQY1XT001COL5T,GQY1XT001D38BT,GQY1XT001C673I,GQY1XT001D2YHL,GQY1XT001ELW9O,GQY1XT001CQZQN,GQY1XT001BE1UQ,GQY1XT001BBV94,GQY1XT001ALKLM,GQY1XT001DTO21,GQY1XT001EVEMO,GQY1XT001DI2BU,GQY1XT001DLQRN,GQY1XT001B68G6,GQY1XT001AWTPR,GQY1XT001EJEHE,GQY1XT001AUFT6,GQY1XT001CCZM0,GQY1XT001EU06C,GQY1XT001AUP37,GQY1XT001APH79,GQY1XT001CE9HU,GQY1XT001BK4YX,GQY1XT001B1W2T,GQY1XT001ANA5E,GQY1XT001ED3SR,GQY1XT001BYM9J,GQY1XT001C00PT,GQY1XT001BOFS0,GQY1XT001CJHS3,GQY1XT001AJH8X,GQY1XT001BG46Q,GQY1XT001BMU83,GQY1XT001EZX03,GQY1XT001B4LFT,GQY1XT001CTD4P,GQY1XT001C3JO1,GQY1XT001ERWC5,GQY1XT001ANWBF,GQY1XT001BAJND,GQY1XT001DJXAY,GQY1XT001CNRAF,GQY1XT001BKRP5,GQY1XT001CXJTJ,GQY1XT001C0CHZ,GQY1XT001C796E,GQY1XT001BI2ZG,GQY1XT001AYL9D,GQY1XT001CUSJP,GQY1XT001EHH01,GQY1XT001DCYC6,GQY1XT001C5HZG,GQY1XT001AUQUN,GQY1XT001C6OZE,GQY1XT001A8N8W,GQY1XT001EIH70,GQY1XT001D2X6E,GQY1XT001A3LPZ,GQY1XT001D4WGS,GQY1XT001EHBXM,GQY1XT001D5Q7A,GQY1XT001D8EB5,GQY1XT001CGT8K,GQY1XT001CTNMC,GQY1XT001CK58S,GQY1XT001CAPX5,GQY1XT001B4R28,GQY1XT001EN8JG,GQY1XT001AD005,GQY1XT001A9YQY,GQY1XT001BDHDF,GQY1XT001AGJL9,GQY1XT001EMJBI,GQY1XT001DVOQZ,GQY1XT001DMRXU,GQY1XT001C1DAS,GQY1XT001B9DQF,GQY1XT001ASE6V,GQY1XT001DQC0X,GQY1XT001CDWGK,GQY1XT001EMOTF,GQY1XT001AL3W7,GQY1XT001EY659,GQY1XT001B6DCE,GQY1XT001BLUQX,GQY1XT001EWTWN,GQY1XT001AR9NT,GQY1XT001E3LT3,GQY1XT001B5SG3,GQY1XT001CNUM4,GQY1XT001EZT3K,GQY1XT001DKL5S,GQY1XT001CUK00,GQY1XT001BLKE4,GQY1XT001APUXZ,GQY1XT001A3Y73,GQY1XT001EN2CF,GQY1XT001CBHV3,GQY1XT001DHXW1,GQY1XT001AOZY8,GQY1XT001CLG2Y,GQY1XT001DPSI8,GQY1XT001BPRMD,GQY1XT001DNWRN,GQY1XT001DEXWR,GQY1XT001DKXP3,GQY1XT001DYCC6,GQY1XT001CDHM3,GQY1XT001EQMSR,GQY1XT001CV8TZ,GQY1XT001ATWQK,GQY1XT001A6ISC,GQY1XT001E0SMP,GQY1XT001CT5UF,GQY1XT001DG3SO,GQY1XT001DKMTE,GQY1XT001AGMO9,GQY1XT001D2S9J,GQY1XT001DW5TI,GQY1XT001D7Q49,GQY1XT001CCQ1N,GQY1XT001DU2EM,GQY1XT001EUVLC,GQY1XT001EML84,GQY1XT001BPOAZ,GQY1XT001EL6SG,GQY1XT001DGIO1,GQY1XT001C68BZ,GQY1XT001BSQC3,GQY1XT001AKG7O,GQY1XT001AW7NX,GQY1XT001CX2LF,GQY1XT001B8JCT,GQY1XT001A8CLB,GQY1XT001CUDB2,GQY1XT001B9H6U,GQY1XT001CPCTN,GQY1XT001BCQN1,GQY1XT001C8J6G,GQY1XT001ALJHG,GQY1XT001CMRQC,GQY1XT001DCOLL,GQY1XT001AMONH,GQY1XT001COBD6,GQY1XT001BAZAL,GQY1XT001BGIUX,GQY1XT001CB0K5,GQY1XT001E08MN,GQY1XT001BO0YS,GQY1XT001AQDOU,GQY1XT001EO9BN,GQY1XT001CY81E,GQY1XT001DY2V2,GQY1XT001A95RG,GQY1XT001B37LK,GQY1XT001DM0BH,GQY1XT001CONRH,GQY1XT001EFXXG,GQY1XT001CX0FR,GQY1XT001DZ1KL,GQY1XT001DFSFF,GQY1XT001EK8F4,GQY1XT001BSE1V,GQY1XT001D70UX,GQY1XT001CEETJ,GQY1XT001CTHTZ,GQY1XT001AGN1T,GQY1XT001DAQS9,GQY1XT001A89FL,GQY1XT001A1887,GQY1XT001DH6RN,GQY1XT001CWINJ,GQY1XT001CZNY7,GQY1XT001A5C9H,GQY1XT001CG8GV,GQY1XT001B6LD7,GQY1XT001E5Y5U,GQY1XT001CG6CA,GQY1XT001BGABA,GQY1XT001C4EAR,GQY1XT001BD9AS,GQY1XT001DVV8T,GQY1XT001A7OD4,GQY1XT001CTB09,GQY1XT001A0494,GQY1XT001D1YO5,GQY1XT001EV1QM,GQY1XT001BBCMS,GQY1XT001DQ5O0,GQY1XT001E3LW0,GQY1XT001C1PW7,GQY1XT001CO9RB,GQY1XT001CBB3B,GQY1XT001CM7G9,GQY1XT001CB0RW,GQY1XT001B3I3P,GQY1XT001BEFUV,GQY1XT001D2PVJ,GQY1XT001C9GMB,GQY1XT001DUQS9,GQY1XT001B8BTQ,GQY1XT001DNAYV,GQY1XT001AM6PC,GQY1XT001AZ1HO,GQY1XT001CHK7R,GQY1XT001BJOSU,GQY1XT001DL3SA,GQY1XT001E3JRM,GQY1XT001EOVGN,GQY1XT001EN6F4,GQY1XT001DSW4K,GQY1XT001AMWME,GQY1XT001D7JXJ,GQY1XT001DZRH0,GQY1XT001CIPYX,GQY1XT001BGPJS,GQY1XT001EKUDW,GQY1XT001AOQKQ,GQY1XT001BVVOC,GQY1XT001CI3QZ,GQY1XT001CKZ4B,GQY1XT001CJ2AL,GQY1XT001CTDQQ,GQY1XT001EQXJB,GQY1XT001DE8LH,GQY1XT001CZCI2,GQY1XT001EAJRD,GQY1XT001BVT2P,GQY1XT001AUGH6,GQY1XT001B71QX,GQY1XT001AXR5R,GQY1XT001EIRLO,GQY1XT001B5JIC,GQY1XT001AGXX7,GQY1XT001BCU86,GQY1XT001BSY2Y,GQY1XT001A60CY,GQY1XT001C5SCZ,GQY1XT001BUF3O,GQY1XT001CSCSZ,GQY1XT001D4ULO,GQY1XT001DSAY2,GQY1XT001EHIA9,GQY1XT001E2UNZ,GQY1XT001AZC2R,GQY1XT001B5NAT,GQY1XT001CH768,GQY1XT001EG2B8,GQY1XT001E1IQ8,GQY1XT001CMLO4,GQY1XT001CCE92,GQY1XT001A41WJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7N0G"; +secondCol = "GQY1XT001A7N0G,GQY1XT001C88N6,GQY1XT001B2OEL,GQY1XT001BY6VO,GQY1XT001C6VI9,GQY1XT001B2M97,GQY1XT001EH4CG,GQY1XT001BC4KC,GQY1XT001A2C9E,GQY1XT001E0XL9,GQY1XT001BJ2RM,GQY1XT001BDKBS,GQY1XT001C3NPF,GQY1XT001DJUHX,GQY1XT001EQ0K0,GQY1XT001BCG13,GQY1XT001AXSDH,GQY1XT001DIH0J,GQY1XT001C3DCB,GQY1XT001CMIJY,GQY1XT001D1Z0T,GQY1XT001B8H87,GQY1XT001EPY3S,GQY1XT001BE6OB,GQY1XT001B13VR,GQY1XT001BXW9F,GQY1XT001CB1UA,GQY1XT001AJ3T6,GQY1XT001A2FXF,GQY1XT001D1BKL,GQY1XT001BEQ4X,GQY1XT001CDQY7,GQY1XT001BP63V,GQY1XT001BBOXA,GQY1XT001BDK0W,GQY1XT001B11MQ,GQY1XT001BVSW2,GQY1XT001B2YN0,GQY1XT001EL6TY,GQY1XT001B01CG,GQY1XT001B6G89,GQY1XT001BMUTV,GQY1XT001DRSZM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIUIJ"; +secondCol = "GQY1XT001AIUIJ,GQY1XT001CN1CG,GQY1XT001EDUPD,GQY1XT001DQ0LA,GQY1XT001CEWS3,GQY1XT001BB29Z,GQY1XT001D1RPI,GQY1XT001BIB6V,GQY1XT001AS6TN,GQY1XT001D4I2A,GQY1XT001CTIBY,GQY1XT001EMLFZ,GQY1XT001C24P5,GQY1XT001EOJQA,GQY1XT001CLSGC,GQY1XT001A7LTV,GQY1XT001D9HCP,GQY1XT001D9YC8,GQY1XT001AY5GK,GQY1XT001CWJPW,GQY1XT001DG1IK,GQY1XT001D8ZRM,GQY1XT001AVH1T,GQY1XT001BU0HN,GQY1XT001DO9Z1,GQY1XT001C97KZ,GQY1XT001B6FHE,GQY1XT001EZAR6,GQY1XT001BGQRN,GQY1XT001D0YSD,GQY1XT001C42U1,GQY1XT001BQ82H,GQY1XT001AIUZX,GQY1XT001EJYW9,GQY1XT001EIX93,GQY1XT001BSX3C,GQY1XT001A3ZEL,GQY1XT001DSWFN,GQY1XT001BQPKE,GQY1XT001B8WQS,GQY1XT001DT8O7,GQY1XT001CFLQB,GQY1XT001BRFHX,GQY1XT001BFTHM,GQY1XT001DS42X,GQY1XT001CYLHP,GQY1XT001CBKED,GQY1XT001D7V00,GQY1XT001CARIQ,GQY1XT001A1BIB,GQY1XT001B9TEA,GQY1XT001CR250,GQY1XT001B3O7P,GQY1XT001C4THK,GQY1XT001DC5K7,GQY1XT001DBGT2,GQY1XT001BB06D,GQY1XT001DXNBT,GQY1XT001B0OEL,GQY1XT001EWY43,GQY1XT001D3F5M,GQY1XT001D1NEX,GQY1XT001DDDXL,GQY1XT001D2780,GQY1XT001D9RTU,GQY1XT001E3VE5,GQY1XT001BSUB3,GQY1XT001A1WVN,GQY1XT001D2Z6F,GQY1XT001DSHSK,GQY1XT001EKXHI,GQY1XT001EBIF1,GQY1XT001B4P1U,GQY1XT001AKXD0,GQY1XT001EQJS1,GQY1XT001BTS24,GQY1XT001DDGHY,GQY1XT001AMYA2,GQY1XT001ETEBN,GQY1XT001A2B89,GQY1XT001CKCRI,GQY1XT001C3GDM,GQY1XT001BHAAE,GQY1XT001A4ZLJ,GQY1XT001BG7WW,GQY1XT001C2QS1,GQY1XT001CN5QP,GQY1XT001AEHAD,GQY1XT001EY6HA,GQY1XT001D918M,GQY1XT001D1IO2,GQY1XT001EJADD,GQY1XT001CDE4S,GQY1XT001DWP0P,GQY1XT001A53US,GQY1XT001CV0DF,GQY1XT001BJFJK,GQY1XT001ALBTB,GQY1XT001AGYW3,GQY1XT001AMRMP,GQY1XT001EPR5Q,GQY1XT001EZBNW,GQY1XT001CUTSH,GQY1XT001BIBW2,GQY1XT001EJKQU,GQY1XT001ET3DW,GQY1XT001DB9VI,GQY1XT001EOR8W,GQY1XT001CTJ8R,GQY1XT001CCAHS,GQY1XT001CVV7D,GQY1XT001CPMES,GQY1XT001EHNMC,GQY1XT001CDT3H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDNHY"; +secondCol = "GQY1XT001EDNHY,GQY1XT001CG2MQ,GQY1XT001DAG0X,GQY1XT001AF6R2,GQY1XT001A5E3X,GQY1XT001CM7KD,GQY1XT001DISCZ,GQY1XT001ARAIN,GQY1XT001C7DOV,GQY1XT001ALCZF,GQY1XT001B80IB,GQY1XT001BWZR5,GQY1XT001CJ3F8,GQY1XT001CURU9,GQY1XT001DXHRE,GQY1XT001B5ZVS,GQY1XT001CJLBM,GQY1XT001D541A,GQY1XT001BZUUR,GQY1XT001D3CKE,GQY1XT001DIGMC,GQY1XT001CS8O1,GQY1XT001B3OEQ,GQY1XT001D7AZ3,GQY1XT001BKIQE,GQY1XT001C5NE9,GQY1XT001C1IG2,GQY1XT001ANGR4,GQY1XT001DBZ4O,GQY1XT001AQPVB,GQY1XT001EFPX6,GQY1XT001EGILG,GQY1XT001CUL2R,GQY1XT001ARBAF,GQY1XT001EPF5C,GQY1XT001ELF8W,GQY1XT001B5DAK,GQY1XT001AOPGV,GQY1XT001BKHDU,GQY1XT001AGNH3,GQY1XT001AVEPB,GQY1XT001D2X3C,GQY1XT001BJ13Z,GQY1XT001BIFFS,GQY1XT001BZY35,GQY1XT001BN5ZW,GQY1XT001C8Y4I,GQY1XT001B5URM,GQY1XT001EH35H,GQY1XT001B6U0E,GQY1XT001DXU7K,GQY1XT001CCL2G,GQY1XT001BANY6,GQY1XT001CNALV,GQY1XT001B9I6Z,GQY1XT001DHIRK,GQY1XT001CU26U,GQY1XT001EADC5,GQY1XT001C6NUE,GQY1XT001BHQ5I,GQY1XT001B1II3,GQY1XT001EPDZ0,GQY1XT001EHUIF,GQY1XT001CUDO1,GQY1XT001CATZU,GQY1XT001D3FFP,GQY1XT001DXSH5,GQY1XT001AR778,GQY1XT001AEV2G,GQY1XT001BG07Q,GQY1XT001ERO1Z,GQY1XT001C06PR,GQY1XT001AXO7D,GQY1XT001EDKQ7,GQY1XT001DKWPW,GQY1XT001DSZL8,GQY1XT001CPK3D,GQY1XT001CSQK9,GQY1XT001CF10P,GQY1XT001CVH46,GQY1XT001CABUX,GQY1XT001D2NPL,GQY1XT001DHDUL,GQY1XT001BQ2PE,GQY1XT001AHCAY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPAC5"; +secondCol = "GQY1XT001DPAC5,GQY1XT001C5YL3,GQY1XT001AIN42,GQY1XT001CNKMN,GQY1XT001E15DS,GQY1XT001AK6MU,GQY1XT001C2QOR,GQY1XT001B353L,GQY1XT001EVK80,GQY1XT001A6MUA,GQY1XT001CXHAJ,GQY1XT001A0GB9,GQY1XT001A3L2C,GQY1XT001CBS49,GQY1XT001APWE9,GQY1XT001C7GRY,GQY1XT001ESDX1,GQY1XT001DIQAQ,GQY1XT001C2JJN,GQY1XT001DV24Z,GQY1XT001EOZJE,GQY1XT001BD76K,GQY1XT001BJXZE,GQY1XT001EN82S,GQY1XT001ECDFI,GQY1XT001DNTOU,GQY1XT001BNJJW,GQY1XT001COAXC,GQY1XT001A9LPV,GQY1XT001EY1ZJ,GQY1XT001A88FG,GQY1XT001CPXYU,GQY1XT001C72CP,GQY1XT001D2SJ9,GQY1XT001DRZUZ,GQY1XT001BVAFX,GQY1XT001DGX79,GQY1XT001D19CW,GQY1XT001CI55S,GQY1XT001EWUZJ,GQY1XT001EEL0Y,GQY1XT001BPUUR,GQY1XT001D2IA2,GQY1XT001DFDP6,GQY1XT001AW8K3,GQY1XT001BZ6TM,GQY1XT001EGKO4,GQY1XT001EBY3E,GQY1XT001CJFUA,GQY1XT001DYP2X,GQY1XT001DVP8A,GQY1XT001C3X3J,GQY1XT001CTXKM,GQY1XT001AL48M,GQY1XT001BH654,GQY1XT001DK3OW,GQY1XT001EXWDT,GQY1XT001CPCX6,GQY1XT001BC7ZY,GQY1XT001BDKQH,GQY1XT001CLRQX,GQY1XT001AE8UB,GQY1XT001AEWZ8,GQY1XT001CZKQM,GQY1XT001ENNER,GQY1XT001C8YBT,GQY1XT001BJACQ,GQY1XT001CT4XU,GQY1XT001B5LYX,GQY1XT001D8EU3,GQY1XT001CRGN4,GQY1XT001CIFXF,GQY1XT001D9MF8,GQY1XT001DWTC7,GQY1XT001B4JCE,GQY1XT001AKT2L,GQY1XT001DDT53,GQY1XT001BM8O6,GQY1XT001DH2Q9,GQY1XT001EIQBT,GQY1XT001D089D,GQY1XT001ASOMH,GQY1XT001A8N7T,GQY1XT001EBR9R,GQY1XT001BHFAC,GQY1XT001BBQZF,GQY1XT001B52LI,GQY1XT001CS88F,GQY1XT001CCWJO,GQY1XT001ENCH3,GQY1XT001ES543,GQY1XT001BQMGT,GQY1XT001EQ9RT,GQY1XT001ERX6D,GQY1XT001CUJU0,GQY1XT001B4LNY,GQY1XT001EE6NB,GQY1XT001BHSXZ,GQY1XT001CKABI,GQY1XT001CZC25,GQY1XT001D2AEE,GQY1XT001BZAA7,GQY1XT001DZMRN,GQY1XT001ENOG5,GQY1XT001ENNPW,GQY1XT001DJATF,GQY1XT001ER44C,GQY1XT001EKWIS,GQY1XT001D7646,GQY1XT001D4QUD,GQY1XT001DCJGV,GQY1XT001BQ23T,GQY1XT001EUFBG,GQY1XT001CRVMB,GQY1XT001BBO91,GQY1XT001BEGWG,GQY1XT001DJF7Z,GQY1XT001EGNT3,GQY1XT001DXXXK,GQY1XT001D5HB5,GQY1XT001CJPXH,GQY1XT001B8BGS,GQY1XT001BU3PC,GQY1XT001CE2UR,GQY1XT001EQC5J,GQY1XT001DEIAX,GQY1XT001DP1EG,GQY1XT001BY8SI,GQY1XT001EIRJQ,GQY1XT001DHC68,GQY1XT001D2VN4,GQY1XT001DWDA0,GQY1XT001DGH0O,GQY1XT001BRGB3,GQY1XT001C0IA8,GQY1XT001CY8B7,GQY1XT001DZRKK,GQY1XT001AP7Z6,GQY1XT001A9F9M,GQY1XT001DTOA3,GQY1XT001D643C,GQY1XT001DPKJM,GQY1XT001D84RP,GQY1XT001CRTXH,GQY1XT001EO4L5,GQY1XT001C0Q3Z,GQY1XT001AS0BT,GQY1XT001AZB3I,GQY1XT001AETOH,GQY1XT001B91QT,GQY1XT001BB6MG,GQY1XT001AHKEQ,GQY1XT001EAOX6,GQY1XT001B1GU2,GQY1XT001CG5J8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D93B0"; +secondCol = "GQY1XT001D93B0,GQY1XT001D2PUR,GQY1XT001ELFSJ,GQY1XT001B05ZI,GQY1XT001AN2UY,GQY1XT001EG3EX,GQY1XT001DCWCK,GQY1XT001BSLSJ,GQY1XT001CG7RV,GQY1XT001DZ2Z6,GQY1XT001EVD65,GQY1XT001B6GTU,GQY1XT001BYUZX,GQY1XT001B6Y0V,GQY1XT001BTNG1,GQY1XT001CZVEA,GQY1XT001B9SE5,GQY1XT001AI836,GQY1XT001B53YA,GQY1XT001AUCB6,GQY1XT001A58RY,GQY1XT001AS7MY,GQY1XT001DZR7S,GQY1XT001BNREO,GQY1XT001D26W8,GQY1XT001BX6FC,GQY1XT001AFCAU,GQY1XT001DJS7V,GQY1XT001EZ9H1,GQY1XT001D0NUD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AM8UY"; +secondCol = "GQY1XT001AM8UY,GQY1XT001A91JN,GQY1XT001DB8TR,GQY1XT001BX5N6,GQY1XT001CSVBH,GQY1XT001DIPCE,GQY1XT001CBYE1,GQY1XT001DPMDM,GQY1XT001B18RT,GQY1XT001DOFCG,GQY1XT001D0IDZ,GQY1XT001B1HAJ,GQY1XT001ETRLL,GQY1XT001E1K6E,GQY1XT001EM0J0,GQY1XT001CL81O,GQY1XT001D6D2F,GQY1XT001ELRL5,GQY1XT001BYDR0,GQY1XT001A6SG7,GQY1XT001DQDA8,GQY1XT001CIPGZ,GQY1XT001EZXT2,GQY1XT001CRFD5,GQY1XT001D8HK9,GQY1XT001C34Q5,GQY1XT001BVUHD,GQY1XT001ER7PP,GQY1XT001DL2QJ,GQY1XT001DAS8R,GQY1XT001D2AZ5,GQY1XT001B8IRG,GQY1XT001ARRWV,GQY1XT001A0XY7,GQY1XT001DTWZW,GQY1XT001AL6GG,GQY1XT001BH22Z,GQY1XT001AXR96,GQY1XT001B7LT0,GQY1XT001EBDFS,GQY1XT001CUBJG,GQY1XT001B7U2K,GQY1XT001AMKYI,GQY1XT001E1ISR,GQY1XT001CI5CC,GQY1XT001B9MYO,GQY1XT001BVMKM,GQY1XT001DIOQ5,GQY1XT001ALSMY,GQY1XT001AFCDV,GQY1XT001A40WE,GQY1XT001EMSJV,GQY1XT001BUF3U,GQY1XT001DNER7,GQY1XT001DP0ZH,GQY1XT001CPL7Y,GQY1XT001C8SW6,GQY1XT001BY5EL,GQY1XT001BXFHU,GQY1XT001BJ6Q0,GQY1XT001D0TZV,GQY1XT001A2OJJ,GQY1XT001CYP9H,GQY1XT001EY548,GQY1XT001EEDV0,GQY1XT001CHRXI,GQY1XT001CC33L,GQY1XT001B0HJY,GQY1XT001E0HFR,GQY1XT001D3I4S,GQY1XT001DQHCM,GQY1XT001EZHCE,GQY1XT001C75ZS,GQY1XT001AM56T,GQY1XT001A4OOB,GQY1XT001BLXLI,GQY1XT001EWGNO,GQY1XT001DUNEU,GQY1XT001EG7U5,GQY1XT001AT871,GQY1XT001BX0KH,GQY1XT001EC5W9,GQY1XT001DV29I,GQY1XT001BN35A,GQY1XT001EURLT,GQY1XT001EC9LP,GQY1XT001DY3TY,GQY1XT001CMTTA,GQY1XT001CAJGU,GQY1XT001BAOTO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXDJ4"; +secondCol = "GQY1XT001DXDJ4,GQY1XT001ATDA7,GQY1XT001ARJ8D,GQY1XT001D122N,GQY1XT001A3XGD,GQY1XT001EN57G,GQY1XT001B4CUL,GQY1XT001CV1T4,GQY1XT001ES49T,GQY1XT001DTBDM,GQY1XT001BJSMS,GQY1XT001AY5Y2,GQY1XT001DCFFG,GQY1XT001BJ72Z,GQY1XT001E3JNY,GQY1XT001C3L9P,GQY1XT001EUNTQ,GQY1XT001CTEJV,GQY1XT001ALINA,GQY1XT001DIXQO,GQY1XT001AH0KK,GQY1XT001B85PG,GQY1XT001CBS2B,GQY1XT001C967B,GQY1XT001DQ73E,GQY1XT001B6HK8,GQY1XT001BYVB3,GQY1XT001DTRQZ,GQY1XT001CGME2,GQY1XT001C4XL6,GQY1XT001AO9LI,GQY1XT001AYP0R,GQY1XT001CHTTJ,GQY1XT001DSAXG,GQY1XT001BPFZM,GQY1XT001BZZ73,GQY1XT001CSC3I,GQY1XT001C0UKP,GQY1XT001AWY1B,GQY1XT001DVOAE,GQY1XT001A7YSN,GQY1XT001CC1NL,GQY1XT001BMEP3,GQY1XT001CLXCL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BO1NW"; +secondCol = "GQY1XT001BO1NW,GQY1XT001E0L3K,GQY1XT001B8IUK,GQY1XT001ECWMG,GQY1XT001AR8O7,GQY1XT001C828U,GQY1XT001CSJE6,GQY1XT001ATM93,GQY1XT001EYD24,GQY1XT001BR7TZ,GQY1XT001B94G6,GQY1XT001CGAWZ,GQY1XT001A17P7,GQY1XT001CGTIF,GQY1XT001DE3EW,GQY1XT001A5LSY,GQY1XT001D9PJK,GQY1XT001BJGHH,GQY1XT001BO1FL,GQY1XT001CQ149,GQY1XT001ENJEO,GQY1XT001CP130,GQY1XT001EEKL5,GQY1XT001DPJQ2,GQY1XT001CGLRL,GQY1XT001EA6QV,GQY1XT001DOWRC,GQY1XT001CHW2J,GQY1XT001BG6FD,GQY1XT001AWM0U,GQY1XT001A6PTK,GQY1XT001AT0KY,GQY1XT001AW2XT,GQY1XT001DOMJ3,GQY1XT001DYGVC,GQY1XT001CLQ6F,GQY1XT001DCX8I,GQY1XT001BTZIF,GQY1XT001ELGSR,GQY1XT001BWXJW,GQY1XT001BV3FK,GQY1XT001COTAG,GQY1XT001BCNQG,GQY1XT001DQTU4,GQY1XT001EVPQO,GQY1XT001DHUTO,GQY1XT001D737O,GQY1XT001BMVEV,GQY1XT001BIKPX,GQY1XT001EVFVX,GQY1XT001DVDKG,GQY1XT001CCVP6,GQY1XT001DFAYZ,GQY1XT001BX4PM,GQY1XT001D2BOS,GQY1XT001DDJH9,GQY1XT001CSI2S,GQY1XT001CG3GH,GQY1XT001EP24O,GQY1XT001DAEON,GQY1XT001BFV4Q,GQY1XT001EOSXP,GQY1XT001B4J69,GQY1XT001BR37F,GQY1XT001BPWOV,GQY1XT001A6BI2,GQY1XT001ESD6X,GQY1XT001CHFP0,GQY1XT001DJ8LJ,GQY1XT001EO7ZI,GQY1XT001DDG1S,GQY1XT001C6JW5,GQY1XT001AYK7I,GQY1XT001EJNF0,GQY1XT001CJ253,GQY1XT001AF1PZ,GQY1XT001DR8VQ,GQY1XT001C0VSR,GQY1XT001CVEPH,GQY1XT001CEV7I,GQY1XT001ED3WS,GQY1XT001CULIW,GQY1XT001CC4RR,GQY1XT001AKEI2,GQY1XT001AYP75,GQY1XT001CWPX0,GQY1XT001A5QX2,GQY1XT001AHHYG,GQY1XT001AT3W8,GQY1XT001DHDJW,GQY1XT001EIHMY,GQY1XT001EQ88K,GQY1XT001C0VHX,GQY1XT001E0CPX,GQY1XT001DX5XO,GQY1XT001DYRU4,GQY1XT001ELKXD,GQY1XT001CPSQ8,GQY1XT001AKJHG,GQY1XT001BKK35,GQY1XT001BL617,GQY1XT001B0L9T,GQY1XT001E28R8,GQY1XT001B2LEP,GQY1XT001BT9A7,GQY1XT001DAINF,GQY1XT001BSZOM,GQY1XT001BK4TQ,GQY1XT001ANR9G,GQY1XT001C2NIS,GQY1XT001BJVJ0,GQY1XT001EKBFH,GQY1XT001BUZ79,GQY1XT001B45K4,GQY1XT001C1C2D,GQY1XT001BLU6D,GQY1XT001CFBDO,GQY1XT001DC9Y2,GQY1XT001BPZ5C,GQY1XT001CQKF4,GQY1XT001ES0JL,GQY1XT001C5RE8,GQY1XT001C2MSW,GQY1XT001B4MAW,GQY1XT001BP98P,GQY1XT001ALJW8,GQY1XT001ET1MU,GQY1XT001EUFIV,GQY1XT001EJVVB,GQY1XT001CEIMZ,GQY1XT001A3XBV,GQY1XT001AY2UM,GQY1XT001C6G4Z,GQY1XT001CDK7Q,GQY1XT001EU8X5,GQY1XT001COFIQ,GQY1XT001COXJE,GQY1XT001DYJI1,GQY1XT001EE732,GQY1XT001A4H5M,GQY1XT001B3O2M,GQY1XT001CPFBQ,GQY1XT001A1GY7,GQY1XT001C6AUS,GQY1XT001BPPDE,GQY1XT001DJZON,GQY1XT001A3MS9,GQY1XT001D5QPV,GQY1XT001BGVSD,GQY1XT001E2M8S,GQY1XT001AVQJU,GQY1XT001AH1MS,GQY1XT001AUYRM,GQY1XT001ALUHE,GQY1XT001DACDP,GQY1XT001AL0ZG,GQY1XT001B2PUS,GQY1XT001CXVJS,GQY1XT001B3V6M,GQY1XT001CBC86,GQY1XT001DMD7X,GQY1XT001C13VJ,GQY1XT001CTVJH,GQY1XT001EMGMW,GQY1XT001BD3M3,GQY1XT001BNQ5X,GQY1XT001BK8A9,GQY1XT001B344Q,GQY1XT001DKL4G,GQY1XT001EKN32,GQY1XT001C90GN,GQY1XT001C5YRC,GQY1XT001ATBA3,GQY1XT001CIRCQ,GQY1XT001C36VM,GQY1XT001A67XA,GQY1XT001A1YYT,GQY1XT001EHUSZ,GQY1XT001B3TS9,GQY1XT001DVAGT,GQY1XT001EQ0C7,GQY1XT001BGN42,GQY1XT001DODZ1,GQY1XT001ANKIV,GQY1XT001DJVLJ,GQY1XT001EB9DV,GQY1XT001EW3HJ,GQY1XT001EB2S8,GQY1XT001EE0Q5,GQY1XT001B4MZ8,GQY1XT001EQ2KI,GQY1XT001ESV8U,GQY1XT001C32R0,GQY1XT001EBFQZ,GQY1XT001D4IZG,GQY1XT001BFAMT,GQY1XT001AWOS9,GQY1XT001AFCA1,GQY1XT001AQ822,GQY1XT001CME7S,GQY1XT001BNOXE,GQY1XT001AJEM4,GQY1XT001D43LR,GQY1XT001BO5KT,GQY1XT001EJAFV,GQY1XT001B05T9,GQY1XT001EAAYZ,GQY1XT001EX2N3,GQY1XT001DLQNX,GQY1XT001DDKVG,GQY1XT001EZJY3,GQY1XT001D7C43,GQY1XT001C2G8X,GQY1XT001AIIOB,GQY1XT001BNPY8,GQY1XT001DCAGH,GQY1XT001COB1C,GQY1XT001BQFZX,GQY1XT001COPDE,GQY1XT001B97Z8,GQY1XT001CD0N6,GQY1XT001BOCVF,GQY1XT001DARUE,GQY1XT001CDA2G,GQY1XT001DFY8V,GQY1XT001BKVEK,GQY1XT001DC5U1,GQY1XT001CRJ9H,GQY1XT001B2VFO,GQY1XT001CBPJK,GQY1XT001DLDFQ,GQY1XT001BXDWK,GQY1XT001EK364,GQY1XT001C6TVU,GQY1XT001EM39Q,GQY1XT001EIE9V,GQY1XT001CZYEP,GQY1XT001AOFOA,GQY1XT001EZX3C,GQY1XT001C50PI,GQY1XT001EATAW,GQY1XT001DUF6J,GQY1XT001DTTH2,GQY1XT001C5TGS,GQY1XT001CN664,GQY1XT001C599X,GQY1XT001BKY82,GQY1XT001ELA35,GQY1XT001BNTRD,GQY1XT001BZCCB,GQY1XT001EXIEB,GQY1XT001CLZNI,GQY1XT001CMF8C,GQY1XT001C7LY8,GQY1XT001EIL2M,GQY1XT001DRTEC,GQY1XT001EZ1Q1,GQY1XT001CP034,GQY1XT001CVPGI,GQY1XT001D8D5G,GQY1XT001AJYRI,GQY1XT001D77XL,GQY1XT001B7YG0,GQY1XT001DNDYL,GQY1XT001C1QOH,GQY1XT001EOZIW,GQY1XT001E3I76,GQY1XT001DG6B8,GQY1XT001BNO9B,GQY1XT001BJV13,GQY1XT001B7JZX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUIQF"; +secondCol = "GQY1XT001CUIQF,GQY1XT001AZCR3,GQY1XT001D16C1,GQY1XT001DC7M3,GQY1XT001AJCNJ,GQY1XT001DRTUZ,GQY1XT001AR2MT,GQY1XT001AZ7FP,GQY1XT001DIAW3,GQY1XT001BZB62,GQY1XT001A2OSL,GQY1XT001CC5MT,GQY1XT001DVE3P,GQY1XT001B37MS,GQY1XT001D9DMN,GQY1XT001CP0FA,GQY1XT001BOH8J,GQY1XT001DHQFD,GQY1XT001DE990,GQY1XT001DD7VX,GQY1XT001CGRM8,GQY1XT001C3LQ5,GQY1XT001EHY8B,GQY1XT001DXTUK,GQY1XT001C1WK1,GQY1XT001DWQUX,GQY1XT001AQY76,GQY1XT001CP2LF,GQY1XT001DDEVQ,GQY1XT001E0R34,GQY1XT001DEHDB,GQY1XT001AGL47,GQY1XT001EA8NA,GQY1XT001C3Q7U,GQY1XT001C76EJ,GQY1XT001BXOIH,GQY1XT001CUL7E,GQY1XT001BJYME,GQY1XT001A2HQG,GQY1XT001C9IX1,GQY1XT001AZRYK,GQY1XT001ETRB8,GQY1XT001AKGO9,GQY1XT001EBBWR,GQY1XT001EX0QA,GQY1XT001CVIBG,GQY1XT001BUUUR,GQY1XT001CT37K,GQY1XT001BPZXE,GQY1XT001AV5EX,GQY1XT001ETRDD,GQY1XT001DUVP4,GQY1XT001EQZS2,GQY1XT001DOGK5,GQY1XT001BQ3UN,GQY1XT001DZFTQ,GQY1XT001DNDWC,GQY1XT001EPNL4,GQY1XT001EAZ08,GQY1XT001D2AZC,GQY1XT001A1Z5F,GQY1XT001CIZ2W,GQY1XT001EWKTZ,GQY1XT001AJNAJ,GQY1XT001BA1A5,GQY1XT001CG9HJ,GQY1XT001D5D1O,GQY1XT001BJ5F5,GQY1XT001DOPOM,GQY1XT001CLMP4,GQY1XT001DYM61,GQY1XT001DFILE,GQY1XT001DNKZJ,GQY1XT001AL2QY,GQY1XT001A3WPZ,GQY1XT001BZQLC,GQY1XT001EPQHZ,GQY1XT001AS0TX,GQY1XT001BXROL,GQY1XT001DXRUP,GQY1XT001B1CRU,GQY1XT001C0KCN,GQY1XT001ET4AE,GQY1XT001DY7WQ,GQY1XT001EQQWZ,GQY1XT001E0V36,GQY1XT001EJCVU,GQY1XT001CV9BE,GQY1XT001EDK29,GQY1XT001CMQX8,GQY1XT001EAHIK,GQY1XT001D3X3G,GQY1XT001AGPMK,GQY1XT001AS086,GQY1XT001BB5XJ,GQY1XT001CF9KJ,GQY1XT001A7T0Z,GQY1XT001BG821,GQY1XT001BGAVM,GQY1XT001E4HKE,GQY1XT001BD62K,GQY1XT001DDOM7,GQY1XT001D97OD,GQY1XT001CZSFO,GQY1XT001BS3RA,GQY1XT001DUIYB,GQY1XT001EP098,GQY1XT001B2SCU,GQY1XT001DSXZY,GQY1XT001EMBH6,GQY1XT001AOH2B,GQY1XT001CPWYY,GQY1XT001AFWQA,GQY1XT001C7ORU,GQY1XT001DAXQ4,GQY1XT001CM627,GQY1XT001DS3FR,GQY1XT001A76SV,GQY1XT001C2193,GQY1XT001DN3FK,GQY1XT001D6SH9,GQY1XT001D0NSC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQ0HR"; +secondCol = "GQY1XT001CQ0HR,GQY1XT001ETVD4,GQY1XT001D1WR6,GQY1XT001BE5GT,GQY1XT001DM83K,GQY1XT001EBLEY,GQY1XT001AF7FU,GQY1XT001A8EZ8,GQY1XT001DVJPF,GQY1XT001BCKU2,GQY1XT001ASD6D,GQY1XT001CNF9V,GQY1XT001CML5H,GQY1XT001CS4AS,GQY1XT001EFHKN,GQY1XT001AOL0Y,GQY1XT001BGUZP,GQY1XT001CEINU,GQY1XT001BSJ4A,GQY1XT001DC066,GQY1XT001BE8Q7,GQY1XT001CNK7P,GQY1XT001BOQY2,GQY1XT001A3VJ0,GQY1XT001DE646,GQY1XT001E424P,GQY1XT001EYRMU,GQY1XT001C3LEL,GQY1XT001CP7S8,GQY1XT001BRD9V,GQY1XT001BAPA0,GQY1XT001DQEHL,GQY1XT001D1DQU,GQY1XT001BCNGY,GQY1XT001A2X4Z,GQY1XT001EZTG8,GQY1XT001B4QDX,GQY1XT001ARTD7,GQY1XT001DNYJ0,GQY1XT001CCAQH,GQY1XT001DF59X,GQY1XT001B6740,GQY1XT001BKNWK,GQY1XT001EPA3S,GQY1XT001C9UB6,GQY1XT001AWC8X,GQY1XT001AU6PX,GQY1XT001EWLVL,GQY1XT001EL9Q1,GQY1XT001BNQVU,GQY1XT001AR2EJ,GQY1XT001DC5KG,GQY1XT001CTI0L,GQY1XT001DSUSG,GQY1XT001DNXRV,GQY1XT001C354O,GQY1XT001BLV4W,GQY1XT001AM52R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUOY9"; +secondCol = "GQY1XT001BUOY9,GQY1XT001BQPBC,GQY1XT001B9VDR,GQY1XT001CBLIQ,GQY1XT001ALDPA,GQY1XT001CX79U,GQY1XT001C0361,GQY1XT001A0YUO,GQY1XT001EUNWE,GQY1XT001CI3C9,GQY1XT001CP8ES,GQY1XT001A7ERY,GQY1XT001C57LL,GQY1XT001D5OO1,GQY1XT001BQA6C,GQY1XT001C96F9,GQY1XT001DR647,GQY1XT001E5CVF,GQY1XT001EK02A,GQY1XT001EHBDD,GQY1XT001E1N7K,GQY1XT001DBO7S,GQY1XT001D6W6L,GQY1XT001CJ7B4,GQY1XT001BP5I4,GQY1XT001B68UW,GQY1XT001AVMLG,GQY1XT001CQN91,GQY1XT001D2FO9,GQY1XT001A43S7,GQY1XT001D4E6B,GQY1XT001CDUGL,GQY1XT001BS4VV,GQY1XT001BVDUP,GQY1XT001A9TFR,GQY1XT001BE2OA,GQY1XT001BYGTB,GQY1XT001BQGZ8,GQY1XT001DBSLL,GQY1XT001BSVL5,GQY1XT001EB161,GQY1XT001D6Q31,GQY1XT001B8CS5,GQY1XT001BEL9N,GQY1XT001AIGFC,GQY1XT001EJI5S,GQY1XT001DYNSK,GQY1XT001B9ST7,GQY1XT001ASH2Q,GQY1XT001CE2PM,GQY1XT001A4WP4,GQY1XT001BYZAG,GQY1XT001CPYLD,GQY1XT001D6AV6,GQY1XT001A0NUX,GQY1XT001AP734,GQY1XT001ET7BM,GQY1XT001CM6EQ,GQY1XT001D4NLM,GQY1XT001BIW2D,GQY1XT001D9581,GQY1XT001BFHT2,GQY1XT001AS9A6,GQY1XT001CP4NZ,GQY1XT001CQ3L7,GQY1XT001DYBJK,GQY1XT001BVTZ4,GQY1XT001D544E,GQY1XT001DBAKB,GQY1XT001DWWHT,GQY1XT001C1TNT,GQY1XT001CBLPY,GQY1XT001ERM4W,GQY1XT001C6C79,GQY1XT001B974Z,GQY1XT001BPFPY,GQY1XT001DBLWZ,GQY1XT001EPE59,GQY1XT001D6EWC,GQY1XT001CFQD6,GQY1XT001B73AJ,GQY1XT001AVLDK,GQY1XT001A90D8,GQY1XT001DTLVG,GQY1XT001EQZY8,GQY1XT001E2M8O,GQY1XT001BKP44,GQY1XT001AIKIE,GQY1XT001EBAVV,GQY1XT001EDSVP,GQY1XT001DWQP9,GQY1XT001B3VAG,GQY1XT001AJ7BD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5M3K"; +secondCol = "GQY1XT001A5M3K,GQY1XT001DRRDM,GQY1XT001BY9W8,GQY1XT001CJYXP,GQY1XT001EA8V8,GQY1XT001C5O6Q,GQY1XT001CCIEJ,GQY1XT001DX2IC,GQY1XT001BSB8H,GQY1XT001B8HPR,GQY1XT001DBM7D,GQY1XT001DY3ZR,GQY1XT001CH7CL,GQY1XT001A0YW8,GQY1XT001EFA1P,GQY1XT001C6UEU,GQY1XT001CMG10,GQY1XT001EGR4Q,GQY1XT001CZWMS,GQY1XT001BRNI4,GQY1XT001DJ23O,GQY1XT001DRME9,GQY1XT001DY98C,GQY1XT001E0D4X,GQY1XT001D1LDD,GQY1XT001ECCIT,GQY1XT001DLVUJ,GQY1XT001DBIHZ,GQY1XT001D51D4,GQY1XT001BZF20,GQY1XT001A1OXZ,GQY1XT001A1H3D,GQY1XT001C53FT,GQY1XT001DRY0X,GQY1XT001DBD6D,GQY1XT001DLZGA,GQY1XT001DSXIA,GQY1XT001APGTE,GQY1XT001CLMYB,GQY1XT001C75P3,GQY1XT001BXKYD,GQY1XT001DUIKM,GQY1XT001AR7UM,GQY1XT001AE7V9,GQY1XT001CIIMW,GQY1XT001BIXFB,GQY1XT001D9OSX,GQY1XT001ECQEK,GQY1XT001ECAFZ,GQY1XT001BPIGG,GQY1XT001BNC10,GQY1XT001CUB73,GQY1XT001CQ95W,GQY1XT001B0KT3,GQY1XT001BC08O,GQY1XT001ARDVK,GQY1XT001DV39I,GQY1XT001BB1WG,GQY1XT001BSHGY,GQY1XT001EAUIU,GQY1XT001D1DNR,GQY1XT001BM432,GQY1XT001E0M0O,GQY1XT001CFXVK,GQY1XT001COHPF,GQY1XT001EBDCS,GQY1XT001DANFB,GQY1XT001C3EBC,GQY1XT001B3BOS,GQY1XT001A06F2,GQY1XT001DNAVM,GQY1XT001E130M,GQY1XT001E2GO9,GQY1XT001DIL9N,GQY1XT001CDZT7,GQY1XT001EVT84,GQY1XT001DWKDT,GQY1XT001CYCCK,GQY1XT001A7A9B,GQY1XT001EZDR2,GQY1XT001C065D,GQY1XT001DQX88,GQY1XT001DUBVS,GQY1XT001A023S,GQY1XT001A0REG,GQY1XT001CKVKE,GQY1XT001B8VV0,GQY1XT001A25BN,GQY1XT001BSO0R,GQY1XT001CZY44,GQY1XT001CEO6D,GQY1XT001DACM9,GQY1XT001DI242,GQY1XT001C8P79,GQY1XT001CG3VQ,GQY1XT001AQAQ5,GQY1XT001BVVFH,GQY1XT001CPRY3,GQY1XT001BAE3R,GQY1XT001CVRNR,GQY1XT001BS6O4,GQY1XT001BMP52,GQY1XT001DABTR,GQY1XT001DBLTM,GQY1XT001E1NZG,GQY1XT001CAWID,GQY1XT001AFPB7,GQY1XT001BUBT3,GQY1XT001AY5FW,GQY1XT001ASNX9,GQY1XT001B5UOI,GQY1XT001ELDEC,GQY1XT001C2T82,GQY1XT001CZ16Y,GQY1XT001C0U1X,GQY1XT001AMCP3,GQY1XT001AEPNK,GQY1XT001A5BVL,GQY1XT001CTBF9,GQY1XT001CP2XI,GQY1XT001BUOH3,GQY1XT001DYMMO,GQY1XT001C4Q49,GQY1XT001BH18T,GQY1XT001A8O4Q,GQY1XT001AHLNC,GQY1XT001BGY38,GQY1XT001ATPIU,GQY1XT001BPJ1P,GQY1XT001EPBG3,GQY1XT001DBXUK,GQY1XT001EXWXJ,GQY1XT001BZS2I,GQY1XT001CBQOO,GQY1XT001A17J6,GQY1XT001B16FV,GQY1XT001DVQ7Z,GQY1XT001CQVJ6,GQY1XT001DGCPE,GQY1XT001CT1FS,GQY1XT001EDJ1A,GQY1XT001AOWYS,GQY1XT001C8U76,GQY1XT001BP3J1,GQY1XT001CV2OM,GQY1XT001CQ78M,GQY1XT001C151U,GQY1XT001CJY3E,GQY1XT001DUWDL,GQY1XT001C89WQ,GQY1XT001A0XUP,GQY1XT001BU5EZ,GQY1XT001AR2KJ,GQY1XT001CMOF0,GQY1XT001CEMJZ,GQY1XT001CTX66,GQY1XT001B2RE2,GQY1XT001EQFKE,GQY1XT001BN8O1,GQY1XT001A5LS2,GQY1XT001AQT0Y,GQY1XT001A9DV5,GQY1XT001AIBCS,GQY1XT001BL9TJ,GQY1XT001BSYAA,GQY1XT001BHS6S,GQY1XT001AQFHN,GQY1XT001BHTU5,GQY1XT001EEHAX,GQY1XT001A4I86,GQY1XT001B72XQ,GQY1XT001ASHYI,GQY1XT001B202T,GQY1XT001DTJIG,GQY1XT001A2T0R,GQY1XT001DH3C5,GQY1XT001BGZ62,GQY1XT001EVQCN,GQY1XT001BJLGB,GQY1XT001BCSAV,GQY1XT001A7OT7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APUDR"; +secondCol = 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,GQY1XT001BA62D,GQY1XT001CRFQ6,GQY1XT001D1VV7,GQY1XT001CYHBO,GQY1XT001C19KQ,GQY1XT001CGY5E,GQY1XT001AG77H,GQY1XT001DCKKN,GQY1XT001ATK3Z,GQY1XT001D70MU,GQY1XT001AW2MB,GQY1XT001D8JGB,GQY1XT001CTRGF,GQY1XT001DIC9J,GQY1XT001ELTOZ,GQY1XT001DH5WK,GQY1XT001EXIS6,GQY1XT001AVG6V,GQY1XT001DZE0Y,GQY1XT001AF60R,GQY1XT001BSIIG,GQY1XT001EQJ0O,GQY1XT001BGTZH,GQY1XT001A59GN,GQY1XT001EG18F,GQY1XT001CIAQF,GQY1XT001ET6B9,GQY1XT001BP4V3,GQY1XT001EWIOW,GQY1XT001A4074,GQY1XT001EECVU,GQY1XT001BPR9A,GQY1XT001EHKVU,GQY1XT001ECI43,GQY1XT001D2Q4J,GQY1XT001EI1KU,GQY1XT001DM37T,GQY1XT001AV4MJ,GQY1XT001BVQTP,GQY1XT001BULHP,GQY1XT001E1A6Z,GQY1XT001BRQ5T,GQY1XT001BS6DN,GQY1XT001CRN2T,GQY1XT001BWC47,GQY1XT001DLG4Z,GQY1XT001AWA2I,GQY1XT001A4OQM,GQY1XT001BOTXI,GQY1XT001E60PM,GQY1XT001ELC5K,GQY1XT001CI8XN,GQY1XT001BTS5T,GQY1XT001ARDPG,GQY1XT001EFRU6,GQY1XT001EAZTR,GQY1XT001CLLI9,GQY1XT001C1SLF,GQY1XT001A7J62,GQY1XT001DNOMG,GQY1XT001AS5HT,GQY1XT001BPC46,GQY1XT001B2VJC,GQY1XT001C2BZY,GQY1XT001AOWB7,GQY1XT001EGIPA,GQY1XT001A0QQL,GQY1XT001DUBO1,GQY1XT001BMUB6,GQY1XT001AEY64,GQY1XT001BMO9S,GQY1XT001DHQLI,GQY1XT001C3V5T,GQY1XT001BGMKJ,GQY1XT001C7LNR,GQY1XT001EFAYM,GQY1XT001B8GUX,GQY1XT001BT18X,GQY1XT001CP1E3,GQY1XT001BPXXF,GQY1XT001CJ2JD,GQY1XT001CLKF7,GQY1XT001CEZUZ,GQY1XT001C78EY,GQY1XT001DILBU,GQY1XT001EAMKP,GQY1XT001D0L0Q,GQY1XT001AE2Q3,GQY1XT001CCR6L,GQY1XT001BU37Q,GQY1XT001A2AR2,GQY1XT001EJ0QM,GQY1XT001BEL6V,GQY1XT001DZSLS,GQY1XT001DVWY1,GQY1XT001C7640,GQY1XT001D0MZE,GQY1XT001EJ0HP,GQY1XT001DPNAG,GQY1XT001D6ESW,GQY1XT001BKJHU,GQY1XT001DJ379,GQY1XT001DBTFP,GQY1XT001C7J6N,GQY1XT001D0L7O,GQY1XT001CAP5W,GQY1XT001CF7RO,GQY1XT001CHNZB,GQY1XT001DGC82,GQY1XT001ET8VJ,GQY1XT001C6KC2,GQY1XT001DTAF2,GQY1XT001CRARX,GQY1XT001EAVX1,GQY1XT001EUUJ7,GQY1XT001CK5JR,GQY1XT001BE0FE,GQY1XT001CR0ZU,GQY1XT001ERSUE,GQY1XT001AUZV4,GQY1XT001D153N,GQY1XT001CRCZN,GQY1XT001DFC93,GQY1XT001AKVIL,GQY1XT001BOB0Z,GQY1XT001A5JZP,GQY1XT001EWU5L,GQY1XT001EBP9M,GQY1XT001DLT9L,GQY1XT001BYHNF,GQY1XT001D39G4,GQY1XT001EBR13,GQY1XT001EQXHK,GQY1XT001B82LV,GQY1XT001AU1G4,GQY1XT001D3TFJ,GQY1XT001B3YGB,GQY1XT001B88AL,GQY1XT001EJ4ZD,GQY1XT001DRX7Y,GQY1XT001CPH4Q,GQY1XT001A7P9B,GQY1XT001CQ9G7,GQY1XT001BOP4B,GQY1XT001E3FPD,GQY1XT001C8MWX,GQY1XT001AF4QL,GQY1XT001BIJAL,GQY1XT001CS0M0,GQY1XT001CELSP,GQY1XT001DA17R,GQY1XT001COTPK,GQY1XT001DP6UA,GQY1XT001C8Q09,GQY1XT001DD2UW,GQY1XT001EUW52,GQY1XT001D16CM,GQY1XT001B11DK,GQY1XT001A9VLF,GQY1XT001EH7DE,GQY1XT001ESS0F,GQY1XT001BCM1X,GQY1XT001DG0BQ,GQY1XT001C7JZP,GQY1XT001A0IK8,GQY1XT001AUK01,GQY1XT001ETWIS,GQY1XT001CAQDH,GQY1XT001ERKTD,GQY1XT001A8DVY,GQY1XT001CHV42,GQY1XT001BS3Z8,GQY1XT001A3Q7X,GQY1XT001C4HCT,GQY1XT001BI8FD,GQY1XT001D4IS2,GQY1XT001AWPWA,GQY1XT001CROWI,GQY1XT001B5689,GQY1XT001C19Y1,GQY1XT001DV1A0,GQY1XT001DS7Z3,GQY1XT001ATLNE,GQY1XT001AIKGC,GQY1XT001EPRT2,GQY1XT001EIX0R,GQY1XT001EGCJI,GQY1XT001CTCGA,GQY1XT001CKJSD,GQY1XT001CFZWI,GQY1XT001C6TZS,GQY1XT001BYY5C,GQY1XT001BDAK2,GQY1XT001B4KJ3,GQY1XT001AXXVY,GQY1XT001APFJO,GQY1XT001A1PEZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTSOS"; +secondCol = "GQY1XT001DTSOS,GQY1XT001ECZDJ,GQY1XT001AZYL7,GQY1XT001DFN8O,GQY1XT001CGSUN,GQY1XT001DXOY8,GQY1XT001CS2WN,GQY1XT001D6959,GQY1XT001B9QCN,GQY1XT001BRMXX,GQY1XT001BZDO6,GQY1XT001BD5UC,GQY1XT001CQXVF,GQY1XT001C4ZM8,GQY1XT001BFCMJ,GQY1XT001CE4WM,GQY1XT001EGZOB,GQY1XT001AXHCN,GQY1XT001AU4C6,GQY1XT001EB23H,GQY1XT001CTGK4,GQY1XT001EXP5A,GQY1XT001DQRA4,GQY1XT001EGZD4,GQY1XT001DU2S1,GQY1XT001ERAWD,GQY1XT001BWG8K,GQY1XT001DM2GJ,GQY1XT001CS3DR,GQY1XT001CWHCS,GQY1XT001BHROI,GQY1XT001CV4MA,GQY1XT001BD2IS,GQY1XT001DRMQZ,GQY1XT001D5MQU,GQY1XT001DXQJO,GQY1XT001CKI2K,GQY1XT001B0UMG,GQY1XT001CFNN4,GQY1XT001BNLFV,GQY1XT001DUY4Z,GQY1XT001APKIB,GQY1XT001AW2PM,GQY1XT001DV9MR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOHBW"; +secondCol = "GQY1XT001DOHBW,GQY1XT001AP161,GQY1XT001CS0L8,GQY1XT001D3COX,GQY1XT001EK1OL,GQY1XT001ECBUO,GQY1XT001D7DZ8,GQY1XT001ALWDP,GQY1XT001BR8XC,GQY1XT001AEZCT,GQY1XT001EN2UY,GQY1XT001BEE25,GQY1XT001D42EL,GQY1XT001BOV17,GQY1XT001CDK0Z,GQY1XT001CRGWJ,GQY1XT001ERGRG,GQY1XT001DUEKU,GQY1XT001DENHU,GQY1XT001ALKUC,GQY1XT001BIBHW,GQY1XT001ALDCP,GQY1XT001A8VG5,GQY1XT001BVODY,GQY1XT001EWO2H,GQY1XT001EYZ58,GQY1XT001EYLWP,GQY1XT001BPSNM,GQY1XT001BLRFN,GQY1XT001AX7SU,GQY1XT001BM00P,GQY1XT001AW8ZA,GQY1XT001D6OZK,GQY1XT001BJWE2,GQY1XT001EV7YX,GQY1XT001A9EWN,GQY1XT001CSH2X,GQY1XT001DLY8W,GQY1XT001CFH4E,GQY1XT001DMBQ5,GQY1XT001EQ2YW,GQY1XT001C6L38,GQY1XT001D74NW,GQY1XT001CKXII,GQY1XT001DR7RJ,GQY1XT001D7YBE,GQY1XT001BX6O3,GQY1XT001BUF63,GQY1XT001BLGB9,GQY1XT001DRNB5,GQY1XT001DHVZX,GQY1XT001A1ANN,GQY1XT001AP8YV,GQY1XT001AZVTR,GQY1XT001BVD5E,GQY1XT001D7DVJ,GQY1XT001AI4ON,GQY1XT001A3SPT,GQY1XT001DHIJI,GQY1XT001C5HN6,GQY1XT001ALXBH,GQY1XT001DRUKD,GQY1XT001EN6VG,GQY1XT001C63B2,GQY1XT001C3EA0,GQY1XT001EIZ7Y,GQY1XT001DUR7A,GQY1XT001DJU6N,GQY1XT001D9GCB,GQY1XT001CPJMT,GQY1XT001BQHY1,GQY1XT001CWT9B,GQY1XT001BIAV4,GQY1XT001DJ2DP,GQY1XT001D87LZ,GQY1XT001CQD2Q,GQY1XT001DRDEG,GQY1XT001A942E,GQY1XT001ET5QT,GQY1XT001DDZB1,GQY1XT001DQ90X,GQY1XT001BUC7L,GQY1XT001AG9R2,GQY1XT001ELV5Y,GQY1XT001BVFD7,GQY1XT001B4R3R,GQY1XT001D9CWP,GQY1XT001EM28J,GQY1XT001B90MK,GQY1XT001CKI5U,GQY1XT001C6TB9,GQY1XT001DYX4O,GQY1XT001DJPAN,GQY1XT001CWDYY,GQY1XT001DYAQT,GQY1XT001CRI88,GQY1XT001CLDCG,GQY1XT001EME08,GQY1XT001EOJHD,GQY1XT001D1TI2,GQY1XT001CEO5Z,GQY1XT001EJY41,GQY1XT001AZ0F2,GQY1XT001BHLWJ,GQY1XT001C8OEF,GQY1XT001EOWXK,GQY1XT001BRVVP,GQY1XT001AKNK7,GQY1XT001DH268,GQY1XT001AJMB7,GQY1XT001EWFSJ,GQY1XT001DLZE2,GQY1XT001EKWEU,GQY1XT001A8IO3,GQY1XT001A74BE,GQY1XT001C3A3E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLRT5"; +secondCol = "GQY1XT001DLRT5,GQY1XT001DRJ1H,GQY1XT001AFIY6,GQY1XT001EZ3I3,GQY1XT001DXA6X,GQY1XT001A43VN,GQY1XT001BCVH2,GQY1XT001DVS7U,GQY1XT001DC17D,GQY1XT001BN8M7,GQY1XT001EN3YK,GQY1XT001AGEG9,GQY1XT001AYDLC,GQY1XT001CVFCZ,GQY1XT001AGGSP,GQY1XT001AGRI8,GQY1XT001EHFYF,GQY1XT001B8SIW,GQY1XT001DQ6TY,GQY1XT001EH05U,GQY1XT001D4VJM,GQY1XT001B3LVJ,GQY1XT001C6GZC,GQY1XT001BDTU7,GQY1XT001BOUTY,GQY1XT001BZK59"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1YL9"; +secondCol = "GQY1XT001B1YL9,GQY1XT001AJ9FA,GQY1XT001AFRQ9,GQY1XT001EX29Y,GQY1XT001BV4CC,GQY1XT001AVW3F,GQY1XT001ASKFG,GQY1XT001CF25H,GQY1XT001DJVJ9,GQY1XT001AV0WF,GQY1XT001APB0N,GQY1XT001A7I4G,GQY1XT001CN0RI,GQY1XT001AW730,GQY1XT001B9ED4,GQY1XT001DI7SY,GQY1XT001CSVA6,GQY1XT001AMILE,GQY1XT001BH8S5,GQY1XT001BMVC5,GQY1XT001EBNSW,GQY1XT001DSKV7,GQY1XT001CJM9D,GQY1XT001CB12K,GQY1XT001C3D8G,GQY1XT001CAIDB,GQY1XT001AXXYS,GQY1XT001AH4MU,GQY1XT001A9XMB,GQY1XT001B80E4,GQY1XT001E0JDS,GQY1XT001C4PZ8,GQY1XT001BKSB0,GQY1XT001DR8AS,GQY1XT001BZJUK,GQY1XT001DKWOX,GQY1XT001BXMJN,GQY1XT001CJ0D3,GQY1XT001EATAE,GQY1XT001E1XQT,GQY1XT001BBKVG,GQY1XT001EMLRK,GQY1XT001BE34V,GQY1XT001DA9B8,GQY1XT001B6DIJ,GQY1XT001BVQ8D,GQY1XT001BXORL,GQY1XT001BBMO9,GQY1XT001CUOJ5,GQY1XT001A8DU2,GQY1XT001BKYN9,GQY1XT001CZQ1H,GQY1XT001A2ABU,GQY1XT001CSYW8,GQY1XT001EZWPW,GQY1XT001EKX4Q,GQY1XT001A2UH6,GQY1XT001E1A66,GQY1XT001C64VX,GQY1XT001AHSEO,GQY1XT001C109L,GQY1XT001CUS2Y,GQY1XT001ETRF0,GQY1XT001A9Q9Q,GQY1XT001B11SI,GQY1XT001C0QH4,GQY1XT001EP4YS,GQY1XT001EZ009,GQY1XT001CWY24,GQY1XT001ATIP1,GQY1XT001BHOL6,GQY1XT001D2SQC,GQY1XT001BVT2L,GQY1XT001C28W5,GQY1XT001C81WS,GQY1XT001C7YAM,GQY1XT001ASOX8,GQY1XT001A4CNO,GQY1XT001AVNC4,GQY1XT001CI3R6,GQY1XT001EQ55B,GQY1XT001EHXVX,GQY1XT001E26NU,GQY1XT001DLPF3,GQY1XT001BZBLG,GQY1XT001AU4E0,GQY1XT001EEYTM,GQY1XT001D75CQ,GQY1XT001BXDVF,GQY1XT001BIQHF,GQY1XT001DUSCS,GQY1XT001CZS0G,GQY1XT001CV0UR,GQY1XT001BD9C5,GQY1XT001AT5HA,GQY1XT001BP4O2,GQY1XT001CFIX6,GQY1XT001BSFVC,GQY1XT001CG8YS,GQY1XT001D7OBE,GQY1XT001B84WS,GQY1XT001DC7Y7,GQY1XT001CZXXU,GQY1XT001EVH1H,GQY1XT001D1JE3,GQY1XT001BOCKR,GQY1XT001AQ751,GQY1XT001E1AAI,GQY1XT001AV61A,GQY1XT001DL27K,GQY1XT001BK32G,GQY1XT001CSOA7,GQY1XT001DWF1B,GQY1XT001DM1C8,GQY1XT001CSWH6,GQY1XT001CME4D,GQY1XT001AREW0,GQY1XT001EPM2S,GQY1XT001ANS85,GQY1XT001A1RLJ,GQY1XT001CVEN2,GQY1XT001BB6DE,GQY1XT001EZLQW,GQY1XT001D8SQL,GQY1XT001CYZEC,GQY1XT001BJ8CB,GQY1XT001BFAAI,GQY1XT001AGNIH,GQY1XT001BYZNT,GQY1XT001B4I5G,GQY1XT001B6SXN,GQY1XT001A4P0V,GQY1XT001CV6E7,GQY1XT001B8G21,GQY1XT001BKKNI,GQY1XT001EKLJC,GQY1XT001CGTII,GQY1XT001B6RUT,GQY1XT001AFWRT,GQY1XT001DSK2T,GQY1XT001AO9UP,GQY1XT001CNTSG,GQY1XT001EZQ29,GQY1XT001DBV7Q,GQY1XT001CCWAD,GQY1XT001ESILO,GQY1XT001D4AGS,GQY1XT001BNS9S,GQY1XT001E15PC,GQY1XT001BDK12,GQY1XT001CTDC9,GQY1XT001CHT14,GQY1XT001AXF8P,GQY1XT001BUKC6,GQY1XT001D6HJH,GQY1XT001AKEK2,GQY1XT001BP5F8,GQY1XT001ASA33,GQY1XT001CA7RK,GQY1XT001C44HB,GQY1XT001DZ2G4,GQY1XT001CT9UA,GQY1XT001BZ8O9,GQY1XT001D4LYC,GQY1XT001CSTNP,GQY1XT001AV3CD,GQY1XT001D6UAV,GQY1XT001C2OFI,GQY1XT001CNMN8,GQY1XT001CIOOI,GQY1XT001C876I,GQY1XT001AZQVL,GQY1XT001ETWLH,GQY1XT001CVNWK,GQY1XT001EDOKP,GQY1XT001BSSO6,GQY1XT001ERXGF,GQY1XT001D6533,GQY1XT001C5H22"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COTQS"; +secondCol = "GQY1XT001COTQS,GQY1XT001DPGP2,GQY1XT001CKKEH,GQY1XT001ENQX3,GQY1XT001ESJUN,GQY1XT001BBSC4,GQY1XT001C9JD7,GQY1XT001CB139,GQY1XT001A7LP4,GQY1XT001ELUFS,GQY1XT001BZ96N,GQY1XT001EAQKK,GQY1XT001APD4G,GQY1XT001DJQ5E,GQY1XT001CXFYT,GQY1XT001E030A,GQY1XT001D92R4,GQY1XT001C6X1B,GQY1XT001DC0PC,GQY1XT001AQD2J,GQY1XT001DOC98,GQY1XT001B6XJP,GQY1XT001EZJWQ,GQY1XT001D1A05,GQY1XT001EK87D,GQY1XT001D8JDJ,GQY1XT001BJMD3,GQY1XT001E2Y9A,GQY1XT001CF18E,GQY1XT001CMSVP,GQY1XT001B66D6,GQY1XT001BZEMN,GQY1XT001DXMMU,GQY1XT001AZKN4,GQY1XT001CGI1C,GQY1XT001DLGYF,GQY1XT001BFI20,GQY1XT001BA446,GQY1XT001E0BG6,GQY1XT001CZGLY,GQY1XT001AL80I,GQY1XT001D9IBQ,GQY1XT001EWF2A,GQY1XT001DMNFR,GQY1XT001DH217,GQY1XT001C0E1S,GQY1XT001EGAH2,GQY1XT001DM7KB,GQY1XT001DCX5Q,GQY1XT001DBXIR,GQY1XT001AD96B,GQY1XT001ERPZO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2H0U"; +secondCol = "GQY1XT001B2H0U,GQY1XT001EMGB3,GQY1XT001EO5CA,GQY1XT001DORFL,GQY1XT001AVOG6,GQY1XT001ANK31,GQY1XT001ATTUZ,GQY1XT001DFE8O,GQY1XT001B7X2V,GQY1XT001D7XJT,GQY1XT001DSOF6,GQY1XT001C6HTW,GQY1XT001D6KYW,GQY1XT001A79H0,GQY1XT001DPUFL,GQY1XT001DW7KY,GQY1XT001DO5X3,GQY1XT001BAUDM,GQY1XT001AQ8VQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHSTH"; +secondCol = "GQY1XT001BHSTH,GQY1XT001C7Q4I,GQY1XT001B1NX6,GQY1XT001A3WK0,GQY1XT001B93EH,GQY1XT001BCJK4,GQY1XT001BH079,GQY1XT001DVXUF,GQY1XT001DHYVD,GQY1XT001D8RPL,GQY1XT001EH8SO,GQY1XT001BG9OR,GQY1XT001DLA8N,GQY1XT001DJ07Y,GQY1XT001DG2I0,GQY1XT001DTOQV,GQY1XT001A2MC5,GQY1XT001BTE4D,GQY1XT001AZBR2,GQY1XT001A6LU0,GQY1XT001E10I3,GQY1XT001D2GDB,GQY1XT001DLN6K,GQY1XT001BROXU,GQY1XT001CQXQB,GQY1XT001CPE1I,GQY1XT001C3D2S,GQY1XT001D5L09,GQY1XT001CFM7I,GQY1XT001BOVLR,GQY1XT001DL9RM,GQY1XT001DH3Z6,GQY1XT001BZE9O,GQY1XT001DZEAP,GQY1XT001EWOTA,GQY1XT001D0YWF,GQY1XT001APIFX,GQY1XT001CTDMT,GQY1XT001DMZ7U,GQY1XT001CG95V,GQY1XT001CAR4Y,GQY1XT001CZ6CB,GQY1XT001BEI96,GQY1XT001C3KQH,GQY1XT001A0W54,GQY1XT001AMVKE,GQY1XT001CSLLE,GQY1XT001D6FI5,GQY1XT001DBUYE,GQY1XT001DQADZ,GQY1XT001CWUZ4,GQY1XT001ALCQ5,GQY1XT001AY1OM,GQY1XT001BFXIP,GQY1XT001D19R2,GQY1XT001A66JX,GQY1XT001CEMT5,GQY1XT001AZ093,GQY1XT001DDAHV,GQY1XT001EJFLT,GQY1XT001DP5KB,GQY1XT001CT7N1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A11OV"; +secondCol = "GQY1XT001A11OV,GQY1XT001CE38M,GQY1XT001CUCZX,GQY1XT001BCEMG,GQY1XT001ETHFO,GQY1XT001CAAZI,GQY1XT001BK5YM,GQY1XT001AMDN8,GQY1XT001D6PTT,GQY1XT001CU72F,GQY1XT001DKBMZ,GQY1XT001A2JMV,GQY1XT001A4DQU,GQY1XT001CVA18,GQY1XT001A5IVB,GQY1XT001DX79A,GQY1XT001AH3D1,GQY1XT001EXHB8,GQY1XT001EHWT7,GQY1XT001DVAEC,GQY1XT001CPXU3,GQY1XT001B3G30,GQY1XT001AMSZ4,GQY1XT001C1WNV,GQY1XT001ASDOG,GQY1XT001BW1Z7,GQY1XT001BCHKA,GQY1XT001DVBD8,GQY1XT001EZP7O,GQY1XT001BBT2B,GQY1XT001CU9FZ,GQY1XT001D6BRH,GQY1XT001CL7KQ,GQY1XT001CTPJU,GQY1XT001DSNOS,GQY1XT001EVTTP,GQY1XT001CRILQ,GQY1XT001B3DGM,GQY1XT001DAVO0,GQY1XT001ED2Z7,GQY1XT001D6K5M,GQY1XT001CO80E,GQY1XT001EJ7VN,GQY1XT001D18IL,GQY1XT001CT8D7,GQY1XT001BH85T,GQY1XT001D5T4X,GQY1XT001APMNC,GQY1XT001CWSPO,GQY1XT001AX41D,GQY1XT001BHX75,GQY1XT001A0WUV,GQY1XT001CQOUK,GQY1XT001EO80D,GQY1XT001D6W9R,GQY1XT001AQFO7,GQY1XT001BO4C4,GQY1XT001A50MG,GQY1XT001BYAEK,GQY1XT001D6JNN,GQY1XT001AKUZS,GQY1XT001EPNZG,GQY1XT001A94ZZ,GQY1XT001A5J86,GQY1XT001AWFYZ,GQY1XT001B0V76,GQY1XT001CF00I,GQY1XT001D5N0E,GQY1XT001EYYML,GQY1XT001B1ZUX,GQY1XT001B0EM7,GQY1XT001E14K5,GQY1XT001BF311,GQY1XT001B0BDZ,GQY1XT001ASBFN,GQY1XT001D5M34,GQY1XT001CQNND,GQY1XT001CNT5Z,GQY1XT001AEQA0,GQY1XT001B7T3Z,GQY1XT001EBXPR,GQY1XT001CF1BF,GQY1XT001B440M,GQY1XT001B3P4P,GQY1XT001C07AA,GQY1XT001EUUE6,GQY1XT001A41FT,GQY1XT001DZOH0,GQY1XT001AU4J6,GQY1XT001AKKZ7,GQY1XT001DY8F7,GQY1XT001EXB22,GQY1XT001CULO9,GQY1XT001BKILC,GQY1XT001AIUQP,GQY1XT001BAAYW,GQY1XT001APSIX,GQY1XT001DQ8QB,GQY1XT001BKJOM,GQY1XT001C5T9F,GQY1XT001C3YDC,GQY1XT001AV8SF,GQY1XT001BN706,GQY1XT001CVFX1,GQY1XT001EEMZO,GQY1XT001ELU42,GQY1XT001A2LBY,GQY1XT001CC49V,GQY1XT001AIAT3,GQY1XT001DGF49,GQY1XT001E0D5F,GQY1XT001D9IW3,GQY1XT001DJ57O,GQY1XT001CW59I,GQY1XT001AE5OA,GQY1XT001AV01P,GQY1XT001CBJ2G,GQY1XT001CS2XU,GQY1XT001CJXSP,GQY1XT001A9VEC,GQY1XT001BVKI0,GQY1XT001DL6Z2,GQY1XT001DW9B8,GQY1XT001CA919,GQY1XT001D8EYY,GQY1XT001CN3JE,GQY1XT001EAE5C,GQY1XT001DQJRH,GQY1XT001A4AVV,GQY1XT001ELF4J,GQY1XT001CYVDQ,GQY1XT001EQPB4,GQY1XT001ALFYG,GQY1XT001E0XK2,GQY1XT001DPUE7,GQY1XT001EBTIR,GQY1XT001B3SSG,GQY1XT001DEWNS,GQY1XT001A9WOO,GQY1XT001CJZCT,GQY1XT001AOSHI,GQY1XT001BFX1R,GQY1XT001C6PXN,GQY1XT001ALJGW,GQY1XT001D2O3D,GQY1XT001EINC8,GQY1XT001APEHB,GQY1XT001DFNGU,GQY1XT001ATCHG,GQY1XT001AKS6A,GQY1XT001DY91W,GQY1XT001B96U3,GQY1XT001CHQ5Z,GQY1XT001CZARR,GQY1XT001ED4PN,GQY1XT001AVUZX,GQY1XT001EA2FP,GQY1XT001A5VBV,GQY1XT001AOOPE,GQY1XT001CPHO3,GQY1XT001CMZ8G,GQY1XT001DJUVZ,GQY1XT001BFD2S,GQY1XT001B1QXC,GQY1XT001BIFQF,GQY1XT001DYNWS,GQY1XT001BFFP4,GQY1XT001D7VGC,GQY1XT001AU1IG,GQY1XT001BKSW6,GQY1XT001AHMU2,GQY1XT001B2BP9,GQY1XT001AQSYM,GQY1XT001DN8FQ,GQY1XT001DPRJ0,GQY1XT001A0HY5,GQY1XT001B87EO,GQY1XT001EO2NW,GQY1XT001A7C1J,GQY1XT001BE2C9,GQY1XT001DBEFI,GQY1XT001BWS68,GQY1XT001D1UG6,GQY1XT001ARQHK,GQY1XT001ARZJP,GQY1XT001B95QL,GQY1XT001CS97C,GQY1XT001AG379,GQY1XT001BRVHC,GQY1XT001E5SM2,GQY1XT001DZHVH,GQY1XT001AN4KQ,GQY1XT001E2BRV,GQY1XT001DR1Y3,GQY1XT001DPR6Q,GQY1XT001DNT76,GQY1XT001CLXNH,GQY1XT001CFLDU,GQY1XT001C2RNK,GQY1XT001BWR0O,GQY1XT001AOBUY,GQY1XT001AFK3V,GQY1XT001A9Z2D,GQY1XT001BZHRP,GQY1XT001D7I4P,GQY1XT001C5VF0,GQY1XT001BYJLX,GQY1XT001A3FMZ,GQY1XT001D326G,GQY1XT001CRR3G,GQY1XT001D9QTB,GQY1XT001BMK7X,GQY1XT001BY1ST,GQY1XT001C5B3F,GQY1XT001BEN5M,GQY1XT001A7RAO,GQY1XT001AVBAA,GQY1XT001ETI3E,GQY1XT001D9FH8,GQY1XT001BEDZP,GQY1XT001EOZJL,GQY1XT001AR7IV,GQY1XT001DC8G2,GQY1XT001A2FCE,GQY1XT001A5WRZ,GQY1XT001EPY2O,GQY1XT001AM48U,GQY1XT001A0BQV,GQY1XT001BG10A,GQY1XT001DCL80,GQY1XT001CCO0M,GQY1XT001C7TUC,GQY1XT001DFVV6,GQY1XT001AZ8F1,GQY1XT001CJHSR,GQY1XT001AIJX5,GQY1XT001C5GAZ,GQY1XT001CTOJR,GQY1XT001CJF39,GQY1XT001CXI1T,GQY1XT001EE13N,GQY1XT001ENHYY,GQY1XT001DKW4Q,GQY1XT001BG2NF,GQY1XT001BU3AK,GQY1XT001DYGHI,GQY1XT001DDOR9,GQY1XT001BTQYF,GQY1XT001CHMZB,GQY1XT001BT1AG,GQY1XT001A18R7,GQY1XT001DRLA0,GQY1XT001BHW8R,GQY1XT001DW12U,GQY1XT001DTJ6T,GQY1XT001C4YAI,GQY1XT001CH8GA,GQY1XT001CZI86,GQY1XT001ENC5Z,GQY1XT001CGQ7A,GQY1XT001BJL4U,GQY1XT001CSBEO,GQY1XT001A1WLN,GQY1XT001D8RBV,GQY1XT001CXVO7,GQY1XT001AJMZB,GQY1XT001DS599,GQY1XT001CREVH,GQY1XT001DEDNU,GQY1XT001A7XD6,GQY1XT001CY6V1,GQY1XT001BWVTQ,GQY1XT001CQAFH,GQY1XT001AWADC,GQY1XT001AWNY3,GQY1XT001BBQ8O,GQY1XT001DWALS,GQY1XT001DWA91,GQY1XT001AK4Z6,GQY1XT001E1XUN,GQY1XT001DKGLX,GQY1XT001CJZR8,GQY1XT001B6ITJ,GQY1XT001EVSYY,GQY1XT001CKR7F,GQY1XT001AZ1ZK,GQY1XT001CRAT9,GQY1XT001E2Z7B,GQY1XT001CW2GN,GQY1XT001AHEP2,GQY1XT001CRG92,GQY1XT001DMPMC,GQY1XT001BII0L,GQY1XT001ERPHV,GQY1XT001DRC0B,GQY1XT001EGZZ8,GQY1XT001BHRO0,GQY1XT001CGKRO,GQY1XT001ES9FI,GQY1XT001EJSVE,GQY1XT001CMV5D,GQY1XT001DP4KH,GQY1XT001D5DQW,GQY1XT001ETZDB,GQY1XT001DJDZ5,GQY1XT001A7YPX,GQY1XT001D6WUV,GQY1XT001EREVD,GQY1XT001ETJ93,GQY1XT001ECU7X,GQY1XT001BDKCO,GQY1XT001DZ6QN,GQY1XT001DWMG3,GQY1XT001B4ZRY,GQY1XT001BAUN7,GQY1XT001B0JDX,GQY1XT001ASIIE,GQY1XT001B3D0J,GQY1XT001CS0UK,GQY1XT001DGM6U,GQY1XT001CGH8B,GQY1XT001A8FZN,GQY1XT001CZLZS,GQY1XT001BVV1A,GQY1XT001B8TNE,GQY1XT001DKNKF,GQY1XT001DIJ79,GQY1XT001CKYF1,GQY1XT001BTVSF,GQY1XT001A5DHB,GQY1XT001CTJ2H,GQY1XT001AEZEG,GQY1XT001DFTZR,GQY1XT001BHGJ3,GQY1XT001AR6BE,GQY1XT001BT867,GQY1XT001ESOLL,GQY1XT001EB0V7,GQY1XT001CY7FA,GQY1XT001EEG9U,GQY1XT001DAT05,GQY1XT001DNUVP,GQY1XT001D390J,GQY1XT001AMXV8,GQY1XT001BQ9LW,GQY1XT001CY1CL,GQY1XT001EK6GA,GQY1XT001CQR8T,GQY1XT001DZ0V9,GQY1XT001C0NI8,GQY1XT001DS93A,GQY1XT001BIGOM,GQY1XT001EQDMA,GQY1XT001CJ5GO,GQY1XT001BYHZ4,GQY1XT001AY5CM,GQY1XT001A6W7G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEX9U"; +secondCol = "GQY1XT001DEX9U,GQY1XT001CXZY7,GQY1XT001B63SM,GQY1XT001DKX5N,GQY1XT001DN1E6,GQY1XT001ER5JL,GQY1XT001AP3I8,GQY1XT001DLV9J,GQY1XT001DRFZN,GQY1XT001A69AK,GQY1XT001DMYDW,GQY1XT001C9B2E,GQY1XT001DX4UF,GQY1XT001A36K3,GQY1XT001EAQEK,GQY1XT001CUKOR,GQY1XT001CP66F,GQY1XT001CV37Z,GQY1XT001B7YD4,GQY1XT001AWEUU,GQY1XT001BGT3O,GQY1XT001EWPDQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9BN9"; +secondCol = "GQY1XT001D9BN9,GQY1XT001DYEWF,GQY1XT001DBQXX,GQY1XT001C5IQ4,GQY1XT001BRVE8,GQY1XT001EON53,GQY1XT001DPLZ2,GQY1XT001D46J8,GQY1XT001AJP9V,GQY1XT001BKNMQ,GQY1XT001B8OLK,GQY1XT001B0HC0,GQY1XT001AQP4N,GQY1XT001D8571,GQY1XT001CWLH7,GQY1XT001BF37D,GQY1XT001CEEKF,GQY1XT001C4KYI,GQY1XT001CWLKT,GQY1XT001CKAUI,GQY1XT001AMQCF,GQY1XT001BBNCF,GQY1XT001D1WRL,GQY1XT001CWG7D,GQY1XT001AZ8ID"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW1V5"; +secondCol = "GQY1XT001DW1V5,GQY1XT001BRTZM,GQY1XT001C54ZG,GQY1XT001DYGMZ,GQY1XT001B1E6A,GQY1XT001D78IY,GQY1XT001D14SN,GQY1XT001BFXN1,GQY1XT001DVCRK,GQY1XT001DN3C8,GQY1XT001EHQH6,GQY1XT001DJFNI,GQY1XT001A64NJ,GQY1XT001CNGSQ,GQY1XT001A1OZN,GQY1XT001BZMO1,GQY1XT001AK1TO,GQY1XT001EHFA8,GQY1XT001CFEKZ,GQY1XT001C5DKP,GQY1XT001C10VZ,GQY1XT001B77I3,GQY1XT001B3MDZ,GQY1XT001AW2B8,GQY1XT001EM799,GQY1XT001AM7DB,GQY1XT001BD0LL,GQY1XT001B741B,GQY1XT001CP05S,GQY1XT001EUTLC,GQY1XT001EW4XL,GQY1XT001BK19O,GQY1XT001DDBF6,GQY1XT001B42N9,GQY1XT001C75BO,GQY1XT001CO2RR,GQY1XT001AL2JH,GQY1XT001BGWV5,GQY1XT001ECQJT,GQY1XT001EJHHQ,GQY1XT001C3TMN,GQY1XT001D58HL,GQY1XT001CE6J2,GQY1XT001CALVK,GQY1XT001CVDUV,GQY1XT001CMLL4,GQY1XT001BTY5E,GQY1XT001AM9TE,GQY1XT001CTMC5,GQY1XT001ARCEG,GQY1XT001B7JGC,GQY1XT001B59D1,GQY1XT001EXUUL,GQY1XT001DXFJ3,GQY1XT001EBVYR,GQY1XT001EK2LW,GQY1XT001D0J7O,GQY1XT001EE2KL,GQY1XT001DHZW9,GQY1XT001DIXSY,GQY1XT001AIPCU,GQY1XT001D7U7L,GQY1XT001E4BI5,GQY1XT001C6QE2,GQY1XT001AT8WO,GQY1XT001E24AT,GQY1XT001CS2ZY,GQY1XT001EZQND,GQY1XT001BO8I4,GQY1XT001DBMWB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWZI0"; +secondCol = "GQY1XT001AWZI0,GQY1XT001BKS8J,GQY1XT001B4CUP,GQY1XT001BD2NM,GQY1XT001DTZ9R,GQY1XT001D5HP3,GQY1XT001EN6F7,GQY1XT001A52BQ,GQY1XT001A5BJS,GQY1XT001CBGZ5,GQY1XT001BMNFT,GQY1XT001ALQGR,GQY1XT001EVJME,GQY1XT001EZVPH,GQY1XT001CBITN,GQY1XT001B20CJ,GQY1XT001ANCZO,GQY1XT001BHMT9,GQY1XT001CWI29,GQY1XT001C67YO,GQY1XT001BWQC7,GQY1XT001CHANP,GQY1XT001EHV42,GQY1XT001DWEDD,GQY1XT001D6XL0,GQY1XT001D3Q8C,GQY1XT001C6FBT,GQY1XT001DJY8G,GQY1XT001A0GFM,GQY1XT001DEOWG,GQY1XT001DT6BL,GQY1XT001ECX67,GQY1XT001A246D,GQY1XT001A0XXS,GQY1XT001DXFOR,GQY1XT001DQRH6,GQY1XT001DPSZL,GQY1XT001BIALG,GQY1XT001EROVO,GQY1XT001CVCLG,GQY1XT001E1PSA,GQY1XT001A3KCO,GQY1XT001AUIAL,GQY1XT001EM1XI,GQY1XT001BZGAZ,GQY1XT001BUB9B,GQY1XT001EN7RP,GQY1XT001AF6H6,GQY1XT001C3IZ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALHWC"; +secondCol = "GQY1XT001ALHWC,GQY1XT001A2AJO,GQY1XT001AMUGF,GQY1XT001B3GVP,GQY1XT001ESE0C,GQY1XT001B55XY,GQY1XT001DSN5V,GQY1XT001B7671,GQY1XT001A6ZT4,GQY1XT001BW7LR,GQY1XT001DTGGI,GQY1XT001EVBTV,GQY1XT001DYML7,GQY1XT001CH5LU,GQY1XT001CMW1S,GQY1XT001ETYQF,GQY1XT001D6A35,GQY1XT001BUZ12,GQY1XT001AEYYA,GQY1XT001BN2HM,GQY1XT001CX5UM,GQY1XT001CEF5I,GQY1XT001DAV0S,GQY1XT001CTP2Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECPOA"; +secondCol = "GQY1XT001ECPOA,GQY1XT001C8XKW,GQY1XT001BTQLC,GQY1XT001D70TM,GQY1XT001ARLB6,GQY1XT001C0US8,GQY1XT001C6NU4,GQY1XT001AWYVJ,GQY1XT001BG33S,GQY1XT001DGXMV,GQY1XT001DIVWD,GQY1XT001DPQGY,GQY1XT001BGOGY,GQY1XT001A9IO1,GQY1XT001D8BBV,GQY1XT001DGQSD,GQY1XT001EH6ZU,GQY1XT001CATOZ,GQY1XT001CAZRO,GQY1XT001A4X8K,GQY1XT001BSO1L,GQY1XT001EBQI3,GQY1XT001B1EVO,GQY1XT001D9JDT,GQY1XT001BW38A,GQY1XT001AEV3R,GQY1XT001DMFUT,GQY1XT001AKD59,GQY1XT001EAUF1,GQY1XT001EF6Y7,GQY1XT001EOYBB,GQY1XT001CVORX,GQY1XT001C9N5W,GQY1XT001EO0W6,GQY1XT001AJZYH,GQY1XT001BDP34,GQY1XT001C6E4A,GQY1XT001BKVQZ,GQY1XT001DPFMI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7RD3"; +secondCol = "GQY1XT001D7RD3,GQY1XT001EVYDY,GQY1XT001DFWT0,GQY1XT001ASD8H,GQY1XT001AXHX1,GQY1XT001CORGH,GQY1XT001DDL79,GQY1XT001DIQUI,GQY1XT001DRQ13,GQY1XT001BCD0S,GQY1XT001C4HEE,GQY1XT001CETCG,GQY1XT001DH4ZJ,GQY1XT001BZ48P,GQY1XT001C2MSP,GQY1XT001AYCXM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXUR6"; +secondCol = "GQY1XT001BXUR6,GQY1XT001BMJO2,GQY1XT001A519U,GQY1XT001DUYNK,GQY1XT001DGVD3,GQY1XT001ER459,GQY1XT001EWVOQ,GQY1XT001ARU8B,GQY1XT001A2TNM,GQY1XT001DXKM2,GQY1XT001D0WYB,GQY1XT001DH8KG,GQY1XT001BM6L6,GQY1XT001AS9PN,GQY1XT001D2PFY,GQY1XT001EM24S,GQY1XT001D18BC,GQY1XT001B04KZ,GQY1XT001CIVWQ,GQY1XT001BNWUP,GQY1XT001CNG1Z,GQY1XT001AHJEG,GQY1XT001CDF3F,GQY1XT001AND06,GQY1XT001CL11A,GQY1XT001CG5EZ,GQY1XT001ECUZ8,GQY1XT001EE1Q2,GQY1XT001BTGSS,GQY1XT001EHKUN,GQY1XT001ENPA0,GQY1XT001AEZRU,GQY1XT001D62DJ,GQY1XT001C82CP,GQY1XT001A8MM5,GQY1XT001C11DD,GQY1XT001A6T0U,GQY1XT001BFN0E,GQY1XT001EX37R,GQY1XT001EPDWW,GQY1XT001BGWKO,GQY1XT001B0KLI,GQY1XT001ASUJM,GQY1XT001CJOFF,GQY1XT001C4JDK,GQY1XT001CW300,GQY1XT001DNJWR,GQY1XT001BKUV6,GQY1XT001CPHTS,GQY1XT001DC2B3,GQY1XT001D2W3S,GQY1XT001BBOTQ,GQY1XT001DHW4I,GQY1XT001DAIIP,GQY1XT001BHFVF,GQY1XT001B7KK6,GQY1XT001B4HYF,GQY1XT001DADNS,GQY1XT001AWQN6,GQY1XT001BMELD,GQY1XT001EPZEM,GQY1XT001BFBMC,GQY1XT001ASWGI,GQY1XT001A15A4,GQY1XT001AV61V,GQY1XT001EF9F1,GQY1XT001CXECP,GQY1XT001AZRLJ,GQY1XT001CMOR1,GQY1XT001EDZ9W,GQY1XT001AKFCM,GQY1XT001C5AAK,GQY1XT001BY454,GQY1XT001DYJEU,GQY1XT001BLHCK,GQY1XT001ANM49,GQY1XT001C3DKU,GQY1XT001E2Z7E,GQY1XT001BPLSN,GQY1XT001CWPS4,GQY1XT001CVFW4,GQY1XT001C7N0A,GQY1XT001BXWY0,GQY1XT001A1D7S,GQY1XT001DU37O,GQY1XT001DRZKV,GQY1XT001BUVCQ,GQY1XT001ATNA7,GQY1XT001EAPR7,GQY1XT001D9Y0D,GQY1XT001ANS7Z,GQY1XT001D6FGI,GQY1XT001EH9KX,GQY1XT001EIENF,GQY1XT001BQK3F,GQY1XT001D8BF3,GQY1XT001DOGBL,GQY1XT001DGJER,GQY1XT001CPWMW,GQY1XT001DPXVD,GQY1XT001DDIYZ,GQY1XT001DY8VI,GQY1XT001DQG0W,GQY1XT001ARZQ4,GQY1XT001BG8VW,GQY1XT001BSL3J,GQY1XT001ARNPF,GQY1XT001CLFON,GQY1XT001EWDAP,GQY1XT001B6QLR,GQY1XT001AMP69,GQY1XT001DEZ5U,GQY1XT001EY8G0,GQY1XT001BTNXP,GQY1XT001EA4WX,GQY1XT001B93FY,GQY1XT001A40HR,GQY1XT001BNYSC,GQY1XT001E0IM2,GQY1XT001EJZD3,GQY1XT001EC0PB,GQY1XT001A7HH6,GQY1XT001ENO3V,GQY1XT001DRPXW,GQY1XT001AU2I4,GQY1XT001CTTH0,GQY1XT001BRZPL,GQY1XT001AOFYU,GQY1XT001BS2MU,GQY1XT001AGKNW,GQY1XT001D6X2G,GQY1XT001A9K6S,GQY1XT001B5T1F,GQY1XT001EU28T,GQY1XT001EP0LC,GQY1XT001EGQ1L,GQY1XT001D0TBB,GQY1XT001CWA0D,GQY1XT001C87GM,GQY1XT001BDMU7,GQY1XT001A7EM3,GQY1XT001DYSD6,GQY1XT001BSN17,GQY1XT001BZQKH,GQY1XT001DZP3N,GQY1XT001EGALF,GQY1XT001A4JKG,GQY1XT001DNHGS,GQY1XT001BKE2J,GQY1XT001BO2EK,GQY1XT001B5A5C,GQY1XT001AZ5U5,GQY1XT001CHVVK,GQY1XT001CM17N,GQY1XT001CCCFQ,GQY1XT001BR7PH,GQY1XT001EHGSS,GQY1XT001DTX8K,GQY1XT001ATCOJ,GQY1XT001BVJVU,GQY1XT001DMCBO,GQY1XT001DFYRN,GQY1XT001D2CIM,GQY1XT001D9ZWI,GQY1XT001A1TKG,GQY1XT001CYEHK,GQY1XT001CQQ0V,GQY1XT001D8WOQ,GQY1XT001C2FVM,GQY1XT001ANDYA,GQY1XT001EJ6SZ,GQY1XT001CYBOG,GQY1XT001BZOPW,GQY1XT001AKK8L,GQY1XT001B8NGD,GQY1XT001EB0R7,GQY1XT001B394G,GQY1XT001B5F7T,GQY1XT001A1GBM,GQY1XT001BSU7O,GQY1XT001DTKS7,GQY1XT001DICVC,GQY1XT001CG7QU,GQY1XT001BUF84,GQY1XT001AYI7B,GQY1XT001BUK1U,GQY1XT001EP4OK,GQY1XT001BZHHS,GQY1XT001C72W6,GQY1XT001A41OO,GQY1XT001BRYUN,GQY1XT001CXSLV,GQY1XT001C13ZF,GQY1XT001D3K4P,GQY1XT001AU67W,GQY1XT001BLK2U,GQY1XT001B6FRQ,GQY1XT001DG0TR,GQY1XT001DJNA2,GQY1XT001AVEGB,GQY1XT001D73DR,GQY1XT001BP7TY,GQY1XT001ETNCN,GQY1XT001A0MRU,GQY1XT001EOOU5,GQY1XT001EJI3U,GQY1XT001DGGU6,GQY1XT001ELHMX,GQY1XT001D1TBJ,GQY1XT001CBKUG,GQY1XT001BG8BN,GQY1XT001ESDRE,GQY1XT001BDWY8,GQY1XT001EUSKJ,GQY1XT001DT2JA,GQY1XT001AFLRJ,GQY1XT001ELA0S,GQY1XT001CTJWS,GQY1XT001A2Q3E,GQY1XT001DRZE8,GQY1XT001A9V55,GQY1XT001AT70O,GQY1XT001BDBH7,GQY1XT001BPQZ2,GQY1XT001DW236,GQY1XT001BM8PD,GQY1XT001A1XYF,GQY1XT001DD32O,GQY1XT001DOSJN,GQY1XT001EMLBQ,GQY1XT001BE8DA,GQY1XT001B3M9J,GQY1XT001BXHQG,GQY1XT001A3GNT,GQY1XT001DGNXH,GQY1XT001C2HD8,GQY1XT001CDTJI,GQY1XT001C3ALZ,GQY1XT001D9Y79,GQY1XT001CTD8L,GQY1XT001A46P4,GQY1XT001BW1ZC,GQY1XT001DZZ3P,GQY1XT001CMSQ0,GQY1XT001A14KD,GQY1XT001AJY4K,GQY1XT001EAS9K,GQY1XT001D7LU9,GQY1XT001AYFM0,GQY1XT001DJWTD,GQY1XT001B6MLZ,GQY1XT001DCZFB,GQY1XT001EC4NC,GQY1XT001DB28X,GQY1XT001A7G5T,GQY1XT001EOFQS,GQY1XT001A5UGQ,GQY1XT001DT06V,GQY1XT001B4L8I,GQY1XT001E4M9W,GQY1XT001CZ65F,GQY1XT001BO3MC,GQY1XT001BY37N,GQY1XT001CJ1LV,GQY1XT001DHGYZ,GQY1XT001CX59L,GQY1XT001DB96T,GQY1XT001EHMJ8,GQY1XT001EFLGT,GQY1XT001A0VTU,GQY1XT001COLJU,GQY1XT001C4S5N,GQY1XT001CJJDA,GQY1XT001BU9LX,GQY1XT001C0P3I,GQY1XT001EER4K,GQY1XT001B38IV,GQY1XT001EB27Q,GQY1XT001BJ655,GQY1XT001A5QKZ,GQY1XT001CX64Q,GQY1XT001BRR9P,GQY1XT001B6TSO,GQY1XT001DSWGO,GQY1XT001ETAPQ,GQY1XT001DDFNK,GQY1XT001EBRFH,GQY1XT001EC69Y,GQY1XT001CN7LK,GQY1XT001EB0R3,GQY1XT001CKEGG,GQY1XT001B1QB3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG9HZ"; +secondCol = "GQY1XT001AG9HZ,GQY1XT001B7LBL,GQY1XT001DQY8Q,GQY1XT001ALDJ7,GQY1XT001ELN3U,GQY1XT001BQ9OS,GQY1XT001BMR2O,GQY1XT001BCKUE,GQY1XT001AIV31,GQY1XT001EUY73,GQY1XT001C6EUU,GQY1XT001DMU0K,GQY1XT001D8OOO,GQY1XT001CUURH,GQY1XT001CH899,GQY1XT001AL8YJ,GQY1XT001A8PYW,GQY1XT001ANIDF,GQY1XT001CE104,GQY1XT001DSN6Z,GQY1XT001CEQ6Z,GQY1XT001BRFIP,GQY1XT001BYN5D,GQY1XT001CUI8H,GQY1XT001EQGG0,GQY1XT001CELWK,GQY1XT001E11WM,GQY1XT001AOBVQ,GQY1XT001C1E5Q,GQY1XT001B1984,GQY1XT001D24L1,GQY1XT001C0B3U,GQY1XT001AJAEF,GQY1XT001DK562,GQY1XT001BA38N,GQY1XT001CIGJ9,GQY1XT001CF4YB,GQY1XT001AXYEN,GQY1XT001D28A4,GQY1XT001CQXV3,GQY1XT001BT11Q,GQY1XT001E0QMJ,GQY1XT001EB19C,GQY1XT001D4CZ6,GQY1XT001CY6AD,GQY1XT001DFQYD,GQY1XT001EVLCF,GQY1XT001BQVYO,GQY1XT001BFUAK,GQY1XT001EKPE8,GQY1XT001BA3BT,GQY1XT001C3SIB,GQY1XT001EB024,GQY1XT001B33XI,GQY1XT001CUL72,GQY1XT001BTWBN,GQY1XT001AV5AJ,GQY1XT001AZ96Q,GQY1XT001DT3WK,GQY1XT001BI3LP,GQY1XT001BFR4K,GQY1XT001CW2A2,GQY1XT001B0SP6,GQY1XT001B7LG1,GQY1XT001A0J5K,GQY1XT001BA528,GQY1XT001CX8MM,GQY1XT001CCT79,GQY1XT001C2ZHH,GQY1XT001ENCLM,GQY1XT001CXJJR,GQY1XT001CAC34,GQY1XT001B1FYW,GQY1XT001BHQI7,GQY1XT001C9SVN,GQY1XT001CALZ1,GQY1XT001EO2AF,GQY1XT001DPGTL,GQY1XT001D5CAE,GQY1XT001CSPR4,GQY1XT001CPDZQ,GQY1XT001B09TO,GQY1XT001CCMC3,GQY1XT001BPCD8,GQY1XT001DHA8W,GQY1XT001D1IVC,GQY1XT001C8V92,GQY1XT001BCCQH,GQY1XT001A8QMB,GQY1XT001DD31C,GQY1XT001BWH8K,GQY1XT001A6RLH,GQY1XT001B5BJD,GQY1XT001EFS7W,GQY1XT001EK1A1,GQY1XT001BDGLD,GQY1XT001D6ZTT,GQY1XT001B8TSA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1M68"; +secondCol = "GQY1XT001A1M68,GQY1XT001C8LIH,GQY1XT001ENR1T,GQY1XT001D2S7X,GQY1XT001CUYO3,GQY1XT001CBYE4,GQY1XT001DKZHV,GQY1XT001CVRA7,GQY1XT001CMC0K,GQY1XT001DZMV5,GQY1XT001EQJMU,GQY1XT001DXQHQ,GQY1XT001C49P6,GQY1XT001BXBQ0,GQY1XT001BCBFI,GQY1XT001CQHO3,GQY1XT001BVIMM,GQY1XT001A8YW3,GQY1XT001BYT1A,GQY1XT001B27PH,GQY1XT001DR82I,GQY1XT001B6SSA,GQY1XT001BLG2M,GQY1XT001EIXBI,GQY1XT001DV9DI,GQY1XT001B5N11,GQY1XT001AT66T,GQY1XT001A6YW0,GQY1XT001AI1K5,GQY1XT001EIN2C,GQY1XT001BZ08F,GQY1XT001A6OKW,GQY1XT001C90BR,GQY1XT001CUZ8I,GQY1XT001DKIHX,GQY1XT001ATH2I,GQY1XT001DKT9W,GQY1XT001EGLVF,GQY1XT001EB9P5,GQY1XT001CT0VO,GQY1XT001CWFDN,GQY1XT001DI1BZ,GQY1XT001D1R8F,GQY1XT001ERBD4,GQY1XT001BF4FY,GQY1XT001AHPRK,GQY1XT001A589N,GQY1XT001BRSJT,GQY1XT001ETPI6,GQY1XT001ALQ7C,GQY1XT001BWRH3,GQY1XT001C3BTV,GQY1XT001E1RR5,GQY1XT001AXZOT,GQY1XT001EIJLA,GQY1XT001EMVKM,GQY1XT001D42YW,GQY1XT001AH0HX,GQY1XT001BT7FH,GQY1XT001EGIFR,GQY1XT001AVW9F,GQY1XT001ER1KH,GQY1XT001CIJ9E,GQY1XT001A0YCX,GQY1XT001D3542,GQY1XT001ATAJS,GQY1XT001E0Q4T,GQY1XT001DL44J,GQY1XT001DFUHB,GQY1XT001B40EQ,GQY1XT001C66QS,GQY1XT001B66H4,GQY1XT001CITGD,GQY1XT001BF7VC,GQY1XT001BUGWG,GQY1XT001DUMOR,GQY1XT001DVGH0,GQY1XT001DF0RJ,GQY1XT001BSTLK,GQY1XT001CPPOP,GQY1XT001BU3WZ,GQY1XT001ETYRB,GQY1XT001AW45O,GQY1XT001DG10G,GQY1XT001B33MG,GQY1XT001EQQ9M,GQY1XT001EBEES,GQY1XT001AJ4JS,GQY1XT001CWSZT,GQY1XT001C9QTS,GQY1XT001ANDFL,GQY1XT001BQU49,GQY1XT001AY8JS,GQY1XT001ASU50,GQY1XT001EU77B,GQY1XT001EYWS2,GQY1XT001CBR27,GQY1XT001BAOC9,GQY1XT001C9PHE,GQY1XT001ALZOR,GQY1XT001B6JUA,GQY1XT001ALZFG,GQY1XT001DN6VA,GQY1XT001B7U3H,GQY1XT001BS2AZ,GQY1XT001DVXDQ,GQY1XT001E1Y52,GQY1XT001C1CC2,GQY1XT001EERZ0,GQY1XT001DKGMA,GQY1XT001C9I77,GQY1XT001AUI1A,GQY1XT001E1IO6,GQY1XT001ALGPC,GQY1XT001C3APY,GQY1XT001BK12N,GQY1XT001BTR69,GQY1XT001CHDL3,GQY1XT001DTQMA,GQY1XT001CFVKZ,GQY1XT001BEVMX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC06X"; +secondCol = "GQY1XT001EC06X,GQY1XT001B6TAF,GQY1XT001ELW8U,GQY1XT001A1FX9,GQY1XT001C50G3,GQY1XT001D73ZQ,GQY1XT001BE5BG,GQY1XT001ESII4,GQY1XT001EGOB6,GQY1XT001BOZ32,GQY1XT001DHOY5,GQY1XT001CVWZF,GQY1XT001AP1OF,GQY1XT001DBDXV,GQY1XT001D7GGE,GQY1XT001BKY7C,GQY1XT001CLYEI,GQY1XT001CS3KD,GQY1XT001CCP7O,GQY1XT001DPHWD,GQY1XT001CX7KU,GQY1XT001E14QI,GQY1XT001C68G0,GQY1XT001BSBQN,GQY1XT001BOGB6,GQY1XT001BOHR8,GQY1XT001C393S,GQY1XT001AXXWC,GQY1XT001ALAOO,GQY1XT001C5680,GQY1XT001A94H4,GQY1XT001ENHFO,GQY1XT001EIMW9,GQY1XT001A8E7T,GQY1XT001BJJ3J,GQY1XT001C5MEZ,GQY1XT001A852X,GQY1XT001EB1Y8,GQY1XT001C9GOM,GQY1XT001A5LWK,GQY1XT001EM22F,GQY1XT001BL1AC,GQY1XT001B5RWK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTFHS"; +secondCol = "GQY1XT001CTFHS,GQY1XT001B5BJO,GQY1XT001EB1BX,GQY1XT001AT1Q6,GQY1XT001DO4M0,GQY1XT001DC2ID,GQY1XT001A7D3N,GQY1XT001D3J2E,GQY1XT001CI2AU,GQY1XT001B44RX,GQY1XT001D60Z3,GQY1XT001BITCA,GQY1XT001B2J7L,GQY1XT001BK8AV,GQY1XT001B7IBP,GQY1XT001AGXN7,GQY1XT001DKGPG,GQY1XT001CZ6JR,GQY1XT001BQJWJ,GQY1XT001C0ALV,GQY1XT001DSZHC,GQY1XT001DFZYK,GQY1XT001BQ0Z4,GQY1XT001C4CLP,GQY1XT001CQDMV,GQY1XT001BPDV4,GQY1XT001DUDOJ,GQY1XT001DG05E,GQY1XT001ELNEM,GQY1XT001BJ980,GQY1XT001CA23O,GQY1XT001D2AHH,GQY1XT001CS6A1,GQY1XT001DU5Q9,GQY1XT001D13BV,GQY1XT001AHBD6,GQY1XT001BV48R,GQY1XT001EUDJR,GQY1XT001CHXN3,GQY1XT001EL5K0,GQY1XT001D938K,GQY1XT001D1F0S,GQY1XT001ETZTX,GQY1XT001EIFHB,GQY1XT001A465J,GQY1XT001CADOX,GQY1XT001CXO5E,GQY1XT001CYV64,GQY1XT001EK745,GQY1XT001AQA7X,GQY1XT001A2E5A,GQY1XT001AKNDE,GQY1XT001ENJI5,GQY1XT001BPY69,GQY1XT001BHWSD,GQY1XT001ECAQB,GQY1XT001CKG9V,GQY1XT001B0BCX,GQY1XT001CEBJC,GQY1XT001B48UF,GQY1XT001CGHW3,GQY1XT001ESDYF,GQY1XT001B470N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIUF3"; +secondCol = "GQY1XT001CIUF3,GQY1XT001CQFOV,GQY1XT001BIWIW,GQY1XT001DLLQK,GQY1XT001DTS7U,GQY1XT001BDTWN,GQY1XT001CYMHH,GQY1XT001A4J3G,GQY1XT001CFYJ9,GQY1XT001B8BX1,GQY1XT001DZ8IU,GQY1XT001CLD98,GQY1XT001B5J0X,GQY1XT001DTPG9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXD8S"; +secondCol = "GQY1XT001BXD8S,GQY1XT001EHFN4,GQY1XT001E4D6I,GQY1XT001CZSXU,GQY1XT001CYNIB,GQY1XT001BIKFI,GQY1XT001BPIO6,GQY1XT001D9L12,GQY1XT001BE69S,GQY1XT001BUEW6,GQY1XT001ETY6Z,GQY1XT001BP1HF,GQY1XT001C8WIK,GQY1XT001EQWOY,GQY1XT001CEBE0,GQY1XT001AJMEG,GQY1XT001ECOXY,GQY1XT001D0S72,GQY1XT001CUSW2,GQY1XT001BYB53,GQY1XT001D7MII,GQY1XT001BQF3A,GQY1XT001BQ865,GQY1XT001CQQ86,GQY1XT001BORGT,GQY1XT001EKRB5,GQY1XT001AHF61,GQY1XT001BHK3K,GQY1XT001CEGUH,GQY1XT001EZXQ7,GQY1XT001AE86H,GQY1XT001DZDUC,GQY1XT001CMUSU,GQY1XT001C8CN9,GQY1XT001CXWF8,GQY1XT001AEQP5,GQY1XT001DIO11,GQY1XT001AO1J1,GQY1XT001D5BHA,GQY1XT001B2EB2,GQY1XT001B1TPU,GQY1XT001CPA5R,GQY1XT001AT547,GQY1XT001AW0MF,GQY1XT001CD4RJ,GQY1XT001CNUU1,GQY1XT001DR53I,GQY1XT001DR69X,GQY1XT001DVY4A,GQY1XT001EJZEW,GQY1XT001ATQ5H,GQY1XT001BY0Q3,GQY1XT001AU5UX,GQY1XT001AE9RZ,GQY1XT001EMI5Y,GQY1XT001DZUVY,GQY1XT001DUUGW,GQY1XT001DEOQG,GQY1XT001EHCDJ,GQY1XT001EAVHH,GQY1XT001CVZ62,GQY1XT001CHTL7,GQY1XT001EMD6P,GQY1XT001COZRV,GQY1XT001BEAHF,GQY1XT001AIKG8,GQY1XT001CQ2LC,GQY1XT001A54PJ,GQY1XT001AMB6F,GQY1XT001EX9ID,GQY1XT001DBYSH,GQY1XT001CG2M7,GQY1XT001C16IB,GQY1XT001BWE8O,GQY1XT001CM4DG,GQY1XT001D9H1E,GQY1XT001B1H7E,GQY1XT001CKEIL,GQY1XT001EH695,GQY1XT001B59SM,GQY1XT001EGSSD,GQY1XT001EGNOZ,GQY1XT001BRXUD,GQY1XT001BJ7HJ,GQY1XT001AROLV,GQY1XT001DUSHS,GQY1XT001D5O26"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF1Q3"; +secondCol = "GQY1XT001AF1Q3,GQY1XT001ARH7J,GQY1XT001AX9I0,GQY1XT001CIGFI,GQY1XT001CATM3,GQY1XT001DXRCI,GQY1XT001BEL4E,GQY1XT001CO1WF,GQY1XT001AQQS3,GQY1XT001DRVIQ,GQY1XT001BXPN2,GQY1XT001BSUAO,GQY1XT001AP4EK,GQY1XT001CZGXC,GQY1XT001DQLL2,GQY1XT001ATJCV,GQY1XT001A3VVX,GQY1XT001DLCS7,GQY1XT001EZFBQ,GQY1XT001EAWMJ,GQY1XT001EHQ7I,GQY1XT001DBM8K,GQY1XT001DX7I0,GQY1XT001E1HI4,GQY1XT001BDRSO,GQY1XT001BHIQ4,GQY1XT001BQO40,GQY1XT001B33W2,GQY1XT001BH2VJ,GQY1XT001D0EK4,GQY1XT001CYAC0,GQY1XT001D8YCJ,GQY1XT001CMGJN,GQY1XT001DUL74,GQY1XT001CKZZK,GQY1XT001AF554,GQY1XT001AYUDM,GQY1XT001AO8CB,GQY1XT001AJAKF,GQY1XT001AHI8T,GQY1XT001A21FN,GQY1XT001AJEDY,GQY1XT001D7EPB,GQY1XT001D1Y7Q,GQY1XT001EK6PR,GQY1XT001CJ6CT,GQY1XT001CVGQ5,GQY1XT001E37HM,GQY1XT001EF61Y,GQY1XT001A44CU,GQY1XT001CKNDI,GQY1XT001DHN1T,GQY1XT001AMLIP,GQY1XT001BZRSC,GQY1XT001CZBVK,GQY1XT001BD64X,GQY1XT001DI2K4,GQY1XT001COYZ4,GQY1XT001BYY7Q,GQY1XT001D8WRW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8QTK"; +secondCol = "GQY1XT001C8QTK,GQY1XT001CC1NT,GQY1XT001E0BGV,GQY1XT001CRNR7,GQY1XT001BWPR9,GQY1XT001EWRKT,GQY1XT001A18JR,GQY1XT001C2PQU,GQY1XT001DJFVA,GQY1XT001CFW00,GQY1XT001BH0UZ,GQY1XT001B1PHV,GQY1XT001ATTES,GQY1XT001D4O4R,GQY1XT001C8OUI,GQY1XT001CN3K5,GQY1XT001BSXH1,GQY1XT001B1GJK,GQY1XT001DCY2P,GQY1XT001B48N9,GQY1XT001DEP08,GQY1XT001DYCEW,GQY1XT001DT2UT,GQY1XT001A3F0H,GQY1XT001DFFG8,GQY1XT001AW7Y2,GQY1XT001D6FM0,GQY1XT001BN2XW,GQY1XT001DZQMK,GQY1XT001D79RO,GQY1XT001DPE6E,GQY1XT001AFVW5,GQY1XT001DE1I1,GQY1XT001C7A45,GQY1XT001C0DID,GQY1XT001EJJTN,GQY1XT001CNSKQ,GQY1XT001D1YJN,GQY1XT001B2IO6,GQY1XT001EGUWY,GQY1XT001ER0DZ,GQY1XT001AFI8Z,GQY1XT001BM4W6,GQY1XT001DKA95,GQY1XT001BQ7DJ,GQY1XT001D0IVP,GQY1XT001CZAZX,GQY1XT001B8VTG,GQY1XT001A9ONP,GQY1XT001CMJ1C,GQY1XT001EWJEG,GQY1XT001EKB66,GQY1XT001C74TA,GQY1XT001BM8Y0,GQY1XT001A3B8C,GQY1XT001EJXGL,GQY1XT001AJVMX,GQY1XT001CL4QC,GQY1XT001BZARU,GQY1XT001CNZCS,GQY1XT001C3VQW,GQY1XT001AY4WB,GQY1XT001CMHTP,GQY1XT001BMWKN,GQY1XT001A3BN3,GQY1XT001DSJF6,GQY1XT001CC2FQ,GQY1XT001BRYXH,GQY1XT001DWPX9,GQY1XT001D399N,GQY1XT001ETFOB,GQY1XT001BSNB0,GQY1XT001BD20D,GQY1XT001ES164,GQY1XT001BCEPZ,GQY1XT001D85LN,GQY1XT001CO7ZN,GQY1XT001CRYTB,GQY1XT001DL20Z,GQY1XT001CVBXL,GQY1XT001DMB26,GQY1XT001DDETW,GQY1XT001CF4GD,GQY1XT001BROHC,GQY1XT001EVDQ1,GQY1XT001CESH9,GQY1XT001DZIPY,GQY1XT001D5RZC,GQY1XT001CUIDN,GQY1XT001BOAHV,GQY1XT001CBTUI,GQY1XT001BZYL5,GQY1XT001CZB1V,GQY1XT001ATG01,GQY1XT001D0TA6,GQY1XT001CZFCY,GQY1XT001EHRUB,GQY1XT001BL4M9,GQY1XT001C5VEQ,GQY1XT001BIKY0,GQY1XT001DTHWV,GQY1XT001BZVJK,GQY1XT001AJ884,GQY1XT001COWQ1,GQY1XT001EAQO2,GQY1XT001EL21M,GQY1XT001CD266,GQY1XT001AFZZW,GQY1XT001ET99P,GQY1XT001BA0P5,GQY1XT001E2GW4,GQY1XT001BG1WU,GQY1XT001BZVE1,GQY1XT001CXZ2L,GQY1XT001EGGQU,GQY1XT001EFNAB,GQY1XT001DVO3J,GQY1XT001BQFWV,GQY1XT001EJXC1,GQY1XT001BBLJW,GQY1XT001DL5VF,GQY1XT001AHFBP,GQY1XT001CONPO,GQY1XT001D055Z,GQY1XT001AV14T,GQY1XT001EQH9S,GQY1XT001D8XNQ,GQY1XT001EEPV0,GQY1XT001ELLQ4,GQY1XT001DJF0O,GQY1XT001DXN8B,GQY1XT001AV57H,GQY1XT001A7R7I,GQY1XT001BMT50,GQY1XT001D8QUL,GQY1XT001EUF5T,GQY1XT001BGS7K,GQY1XT001AYZ0X,GQY1XT001D0SHI,GQY1XT001AGY6Z,GQY1XT001BTPNQ,GQY1XT001AYT8R,GQY1XT001ANO5X,GQY1XT001CIIUE,GQY1XT001AGQWH,GQY1XT001DJHL3,GQY1XT001AV6BO,GQY1XT001DKU9K,GQY1XT001BBLZH,GQY1XT001E1XMZ,GQY1XT001DMDRP,GQY1XT001DL5A8,GQY1XT001CQP5R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVJNO"; +secondCol = "GQY1XT001BVJNO,GQY1XT001C65KG,GQY1XT001DRVR2,GQY1XT001EGHAX,GQY1XT001DE8GJ,GQY1XT001BA2UN,GQY1XT001B8GYO,GQY1XT001EYQKZ,GQY1XT001B9QFA,GQY1XT001EUKHP,GQY1XT001DJQKT,GQY1XT001CQVJM,GQY1XT001B6NEI,GQY1XT001DPM3R,GQY1XT001D0POB,GQY1XT001BVAD9,GQY1XT001DOYCR,GQY1XT001AZ0WB,GQY1XT001DZX8S,GQY1XT001APVRF,GQY1XT001C7NYO,GQY1XT001D7TXA,GQY1XT001CQB6W,GQY1XT001BKQG3,GQY1XT001C5ZVG,GQY1XT001C5GGM,GQY1XT001EV1V2,GQY1XT001B6ZHM,GQY1XT001DND7K,GQY1XT001BCPG5,GQY1XT001A8TYO,GQY1XT001BCH7Y,GQY1XT001BJ8ZZ,GQY1XT001CUQCN,GQY1XT001CZ4QW,GQY1XT001CKUHM,GQY1XT001ATWWA,GQY1XT001CGL3L,GQY1XT001DN3H8,GQY1XT001BMNF3,GQY1XT001AIWF5,GQY1XT001EE2S8,GQY1XT001D61NS,GQY1XT001CNH1D,GQY1XT001DICAQ,GQY1XT001CNC87,GQY1XT001C5JF9,GQY1XT001C8E5B,GQY1XT001DKYEK,GQY1XT001BL9ID,GQY1XT001A42KS,GQY1XT001CQNJE,GQY1XT001EH7FD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETRS5"; +secondCol = "GQY1XT001ETRS5,GQY1XT001BVTS8,GQY1XT001EFAG0,GQY1XT001BMX70,GQY1XT001AJD3U,GQY1XT001ALBTF,GQY1XT001B0U6S,GQY1XT001C4QM1,GQY1XT001BERZL,GQY1XT001E0HT7,GQY1XT001AY48M,GQY1XT001EH9RE,GQY1XT001EFATI,GQY1XT001CJKPR,GQY1XT001BPELL,GQY1XT001A60JX,GQY1XT001CQM7U,GQY1XT001EEX26,GQY1XT001A7XVG,GQY1XT001BMWNG,GQY1XT001BR3FR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQW3X"; +secondCol = "GQY1XT001EQW3X,GQY1XT001EJPWQ,GQY1XT001B1TFH,GQY1XT001DQ72N,GQY1XT001ASROG,GQY1XT001EPNAP,GQY1XT001EVO31,GQY1XT001DL8BU,GQY1XT001ANXJA,GQY1XT001C5U8C,GQY1XT001CFCQX,GQY1XT001CF5L5,GQY1XT001DFPFT,GQY1XT001AVS45,GQY1XT001EGIG6,GQY1XT001CY08Q,GQY1XT001AHMS4,GQY1XT001EO6OB,GQY1XT001A27F7,GQY1XT001CDTDU,GQY1XT001DAISF,GQY1XT001DSWXC,GQY1XT001A4J4A,GQY1XT001B8DZT,GQY1XT001A2ER7,GQY1XT001A97HB,GQY1XT001EYO6O,GQY1XT001D3QCW,GQY1XT001BDQUH,GQY1XT001DLATC,GQY1XT001AZGLN,GQY1XT001ECDO4,GQY1XT001CLWHZ,GQY1XT001B1XVL,GQY1XT001CWDTO,GQY1XT001CQZX0,GQY1XT001E3PP4,GQY1XT001CP3UV,GQY1XT001D7LG0,GQY1XT001DALGR,GQY1XT001D5JQO,GQY1XT001B0BQM,GQY1XT001C48KK,GQY1XT001ALYTC,GQY1XT001DWCCL,GQY1XT001CH1ZI,GQY1XT001EGS1R,GQY1XT001C6Y7L,GQY1XT001BFJ29,GQY1XT001CNY0T,GQY1XT001D3KRO,GQY1XT001C9UKC,GQY1XT001D4ODD,GQY1XT001BORWU,GQY1XT001DXYV3,GQY1XT001EOMFG,GQY1XT001DCX8L,GQY1XT001AN3P2,GQY1XT001A48B3,GQY1XT001B3NBR,GQY1XT001D68GI,GQY1XT001DSR1E,GQY1XT001CROQ2,GQY1XT001BINH4,GQY1XT001B0COH,GQY1XT001C9DCZ,GQY1XT001AWDJP,GQY1XT001A6VA0,GQY1XT001ETYP8,GQY1XT001EWK8X,GQY1XT001EC69T,GQY1XT001DRZMK,GQY1XT001EENMS,GQY1XT001BGZ93"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ7DU"; +secondCol = "GQY1XT001EJ7DU,GQY1XT001AWPLA,GQY1XT001CS7L5,GQY1XT001CD8OP,GQY1XT001BSJLJ,GQY1XT001C7IE4,GQY1XT001DDHIB,GQY1XT001AG0LH,GQY1XT001CED2N,GQY1XT001B3W4D,GQY1XT001CMOGK,GQY1XT001EW5DY,GQY1XT001COVZW,GQY1XT001EQ9J9,GQY1XT001DD9I9,GQY1XT001BI17Y,GQY1XT001BMM53,GQY1XT001BJJ9T,GQY1XT001D760Y,GQY1XT001AXFLP,GQY1XT001A7UCN,GQY1XT001CDUXM,GQY1XT001CQZW8,GQY1XT001BL331,GQY1XT001A2F0A,GQY1XT001CC48H,GQY1XT001D3NI7,GQY1XT001BZLP5,GQY1XT001B68LH,GQY1XT001EJYHN,GQY1XT001ASELJ,GQY1XT001A34MM,GQY1XT001DFX3Y,GQY1XT001CR64Y,GQY1XT001AZCJP,GQY1XT001C701Q,GQY1XT001CUNZK,GQY1XT001BX5K3,GQY1XT001ENRJC,GQY1XT001EETIW,GQY1XT001CWYDZ,GQY1XT001D2W0S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWRL7"; +secondCol = "GQY1XT001DWRL7,GQY1XT001BJ5B8,GQY1XT001AOKIZ,GQY1XT001CD011,GQY1XT001BKOAA,GQY1XT001ATYDF,GQY1XT001B6R7R,GQY1XT001DKA49,GQY1XT001EK86W,GQY1XT001CAEZ2,GQY1XT001AIQ61,GQY1XT001DD9VD,GQY1XT001DORJN,GQY1XT001AWBHL,GQY1XT001DSKZG,GQY1XT001DBW9O,GQY1XT001EI9SH,GQY1XT001E0UEA,GQY1XT001BPMHI,GQY1XT001B56ME,GQY1XT001BZDU9,GQY1XT001AQGXX,GQY1XT001D3TNN,GQY1XT001B0CMT,GQY1XT001CQ7A3,GQY1XT001D2TAC,GQY1XT001DKGKA,GQY1XT001CFSYL,GQY1XT001AZUCH,GQY1XT001EPYEI,GQY1XT001BAGQH,GQY1XT001BQAQA,GQY1XT001DDBOX,GQY1XT001A2NR2,GQY1XT001AGWLB,GQY1XT001EFVN3,GQY1XT001DYCHM,GQY1XT001AJMVK,GQY1XT001C45WD,GQY1XT001AO9XM,GQY1XT001CFX95,GQY1XT001EXNU2,GQY1XT001C2X5S,GQY1XT001CAVNU,GQY1XT001CAJ4E,GQY1XT001AI63R,GQY1XT001EKS9A,GQY1XT001A7N81,GQY1XT001AS7UX,GQY1XT001DUEI5,GQY1XT001C3BUE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D79TR"; +secondCol = "GQY1XT001D79TR,GQY1XT001A9SWM,GQY1XT001B62A3,GQY1XT001EGUZ2,GQY1XT001EW1TY,GQY1XT001AL8RY,GQY1XT001DOM1U,GQY1XT001EG7O4,GQY1XT001DG5Q1,GQY1XT001B716N,GQY1XT001DDAWH,GQY1XT001EKB7R,GQY1XT001B78A2,GQY1XT001EGTSG,GQY1XT001CNS5T,GQY1XT001B2XGH,GQY1XT001B8IPT,GQY1XT001EDHJW,GQY1XT001AMF3C,GQY1XT001DZ0K5,GQY1XT001CVDM2,GQY1XT001BH8JE,GQY1XT001DOSHE,GQY1XT001CURWB,GQY1XT001COIVV,GQY1XT001COOT8,GQY1XT001CB407,GQY1XT001ARZWZ,GQY1XT001D2W66,GQY1XT001DX4IL,GQY1XT001AJKAN,GQY1XT001EXGGN,GQY1XT001BAZAP,GQY1XT001A99AI,GQY1XT001E0PZR,GQY1XT001DN4MC,GQY1XT001CHQHE,GQY1XT001BPIZ8,GQY1XT001D9PAK,GQY1XT001C4GFX,GQY1XT001A0TXQ,GQY1XT001BC0KD,GQY1XT001BIWJU,GQY1XT001A5H9U,GQY1XT001AYWCZ,GQY1XT001A6JCK,GQY1XT001CNO98,GQY1XT001C9LV3,GQY1XT001CJF3R,GQY1XT001BUUQY,GQY1XT001AF7GJ,GQY1XT001BWZB5,GQY1XT001BPBDF,GQY1XT001AOXQA,GQY1XT001DJACN,GQY1XT001A1A44,GQY1XT001DFKKK,GQY1XT001BN7JR,GQY1XT001BAQ1K,GQY1XT001C5TTY,GQY1XT001BQ0PZ,GQY1XT001BY8IJ,GQY1XT001BB4AR,GQY1XT001D93NH,GQY1XT001B15DU,GQY1XT001BZ7TF,GQY1XT001CWD8N,GQY1XT001BRMH6,GQY1XT001C61HZ,GQY1XT001BSH2S,GQY1XT001A733T,GQY1XT001C3C72,GQY1XT001A71VV,GQY1XT001A0FT6,GQY1XT001BA0J0,GQY1XT001EP71L,GQY1XT001DFQR9,GQY1XT001BH9AN,GQY1XT001EWBMB,GQY1XT001DMFWI,GQY1XT001EUZIV,GQY1XT001BV2CC,GQY1XT001B5HCF,GQY1XT001DC5NG,GQY1XT001DNYD8,GQY1XT001BY079,GQY1XT001DSK55,GQY1XT001D92PC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6C9Z"; +secondCol = "GQY1XT001B6C9Z,GQY1XT001AJP0S,GQY1XT001A86WE,GQY1XT001C6PB2,GQY1XT001DLVGC,GQY1XT001DRHNK,GQY1XT001B6VEW,GQY1XT001D89R1,GQY1XT001A0S7R,GQY1XT001CK8WJ,GQY1XT001D77MW,GQY1XT001ELFUG,GQY1XT001EX1I9,GQY1XT001EC3QU,GQY1XT001CY6PH,GQY1XT001DSCBI,GQY1XT001DIT2W,GQY1XT001AWXUH,GQY1XT001ET2F1,GQY1XT001C79SC,GQY1XT001D0HRJ,GQY1XT001C2WLR,GQY1XT001BZLMW,GQY1XT001BJH5A,GQY1XT001CSKSE,GQY1XT001AXKUR,GQY1XT001BR2DX,GQY1XT001CNW2G,GQY1XT001CI518,GQY1XT001DDNXE,GQY1XT001BG5ZK,GQY1XT001CYDRR,GQY1XT001AE5I1,GQY1XT001BENE7,GQY1XT001A4YMG,GQY1XT001DVMBR,GQY1XT001EC2HC,GQY1XT001ED2ZX,GQY1XT001C2TGF,GQY1XT001AQ1DJ,GQY1XT001EM9G6,GQY1XT001BXX4U,GQY1XT001EZSMO,GQY1XT001AH9Y6,GQY1XT001DAOVQ,GQY1XT001BJZ0F,GQY1XT001AJN35,GQY1XT001EEV61,GQY1XT001BGJYC,GQY1XT001EH02I,GQY1XT001AGD93,GQY1XT001B54AQ,GQY1XT001CI3UN,GQY1XT001DO333,GQY1XT001EF5RF,GQY1XT001EXU5X,GQY1XT001CP20P,GQY1XT001CSMZR,GQY1XT001CN87K,GQY1XT001BYEE3,GQY1XT001DF0ZK,GQY1XT001D2FEL,GQY1XT001EI67N,GQY1XT001CF830,GQY1XT001BCYL2,GQY1XT001DZFAC,GQY1XT001CV5VQ,GQY1XT001CITXO,GQY1XT001AG9QS,GQY1XT001BKDFD,GQY1XT001CCLPK,GQY1XT001C92P0,GQY1XT001CIIDF,GQY1XT001BYSFU,GQY1XT001CE7D2,GQY1XT001ANYXK,GQY1XT001DN871,GQY1XT001EJBM2,GQY1XT001EEAFB,GQY1XT001DXMSK,GQY1XT001DW0FW,GQY1XT001DMFDM,GQY1XT001CEJDQ,GQY1XT001AIEAC,GQY1XT001AG4BL,GQY1XT001C8WJJ,GQY1XT001DJUCA,GQY1XT001EQ9UV,GQY1XT001EX8MY,GQY1XT001DWQP2,GQY1XT001DYOQS,GQY1XT001EBED6,GQY1XT001A3SFY,GQY1XT001AKSO4,GQY1XT001AFZ1O,GQY1XT001ERTV6,GQY1XT001BA9LD,GQY1XT001EQWVJ,GQY1XT001ECR4N,GQY1XT001DOPJV,GQY1XT001A21GJ,GQY1XT001CXAR1,GQY1XT001BH696,GQY1XT001CSFQW,GQY1XT001CMQ0P,GQY1XT001AO2BK,GQY1XT001EIR5S,GQY1XT001DTYWD,GQY1XT001DL3HX,GQY1XT001DL60R,GQY1XT001C7102,GQY1XT001EVJVA,GQY1XT001EFXCY,GQY1XT001ESG5N,GQY1XT001BNC8W,GQY1XT001CJYTH,GQY1XT001A3POQ,GQY1XT001CWR7T,GQY1XT001CKOU4,GQY1XT001AU8SI,GQY1XT001BLEUQ,GQY1XT001APD1R,GQY1XT001EXNJZ,GQY1XT001B854X,GQY1XT001CYE13,GQY1XT001EQS7D,GQY1XT001A98QS,GQY1XT001EWCLV,GQY1XT001BIHED,GQY1XT001EU02C,GQY1XT001CVC2F,GQY1XT001A9890,GQY1XT001A1R57,GQY1XT001A95FG,GQY1XT001EI8A1,GQY1XT001DUDDU,GQY1XT001B12ZR,GQY1XT001DXVJ2,GQY1XT001EIK3P,GQY1XT001DQRZ2,GQY1XT001D77NH,GQY1XT001ARYIF,GQY1XT001BJYB9,GQY1XT001CAP23"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI480"; +secondCol = "GQY1XT001EI480,GQY1XT001AJBYK,GQY1XT001AHDTU,GQY1XT001EUM97,GQY1XT001A2PCL,GQY1XT001B1G9S,GQY1XT001B0XKB,GQY1XT001CMH37,GQY1XT001CBV32,GQY1XT001BF5P2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EE24J"; +secondCol = "GQY1XT001EE24J,GQY1XT001CD8RM,GQY1XT001CIKXF,GQY1XT001ARJHA,GQY1XT001C2IS2,GQY1XT001B6A9B,GQY1XT001CJHEV,GQY1XT001APNPX,GQY1XT001B9ETT,GQY1XT001DTCH5,GQY1XT001CBFTX,GQY1XT001EPZBE,GQY1XT001DCP0Q,GQY1XT001DI206,GQY1XT001BMC27,GQY1XT001BM5EZ,GQY1XT001DFYC9,GQY1XT001EZCWE,GQY1XT001BSIOE,GQY1XT001AZRTB,GQY1XT001BO2LS,GQY1XT001CP4Z3,GQY1XT001DAR4Y,GQY1XT001D37DE,GQY1XT001AR559,GQY1XT001DID2X,GQY1XT001ESS34,GQY1XT001DSTZL,GQY1XT001DMDSP,GQY1XT001A5WGB,GQY1XT001BQH67,GQY1XT001EDPW7,GQY1XT001AGG79,GQY1XT001B2XRB,GQY1XT001EVZY0,GQY1XT001BVPGU,GQY1XT001AOTAN,GQY1XT001C309T,GQY1XT001D0O6T,GQY1XT001CV8UM,GQY1XT001AK4VA,GQY1XT001BITXP,GQY1XT001CUWX7,GQY1XT001CNT0Q,GQY1XT001D0NFW,GQY1XT001BGT9L,GQY1XT001EO22S,GQY1XT001AYW2I,GQY1XT001D7597,GQY1XT001B38H3,GQY1XT001CQVNB,GQY1XT001C3YID,GQY1XT001CIXHY,GQY1XT001A1FWV,GQY1XT001AWTNW,GQY1XT001CN6A7,GQY1XT001AN14L,GQY1XT001DB0TE,GQY1XT001BSE56,GQY1XT001BGL19,GQY1XT001A9N8G,GQY1XT001EU55W,GQY1XT001DW0MM,GQY1XT001DXEJL,GQY1XT001CUN2E,GQY1XT001CRT3Y,GQY1XT001BWW0G,GQY1XT001ARP37,GQY1XT001B46DU,GQY1XT001E3SU5,GQY1XT001EYZGB,GQY1XT001EY8JP,GQY1XT001B3UO9,GQY1XT001AN987,GQY1XT001BV6EV,GQY1XT001B8JHX,GQY1XT001E4OCT,GQY1XT001DHR67,GQY1XT001BLIVU,GQY1XT001AKDZ7,GQY1XT001CBR03,GQY1XT001AT8PI,GQY1XT001BNQXV,GQY1XT001DRG6V,GQY1XT001B3CQF,GQY1XT001CAUDG,GQY1XT001DMGQA,GQY1XT001B5QLC,GQY1XT001AKKZO,GQY1XT001BULS9,GQY1XT001AUSC9,GQY1XT001B40ZO,GQY1XT001B6U87,GQY1XT001BZEOM,GQY1XT001BD1WY,GQY1XT001A2ELM,GQY1XT001DLK74,GQY1XT001AG3WJ,GQY1XT001BSQKV,GQY1XT001DEQF0,GQY1XT001A1DIH,GQY1XT001AWI8A,GQY1XT001A0DIF,GQY1XT001BKLBV,GQY1XT001BGCU7,GQY1XT001DMC5M,GQY1XT001CXMCR,GQY1XT001C11CW,GQY1XT001BSH4T,GQY1XT001BKQST,GQY1XT001AU99A,GQY1XT001EPBSW,GQY1XT001D9F7P,GQY1XT001EL80M,GQY1XT001D85QA,GQY1XT001EQIKN,GQY1XT001EPQ6M,GQY1XT001B9RV1,GQY1XT001C94Y6,GQY1XT001DHO0Z,GQY1XT001CK1SW,GQY1XT001EC62R,GQY1XT001COHUJ,GQY1XT001BE0XK,GQY1XT001C0IYJ,GQY1XT001DH5QD,GQY1XT001ATA4E,GQY1XT001B8HKW,GQY1XT001AG3DR,GQY1XT001CAVCU,GQY1XT001B6276,GQY1XT001DFEBF,GQY1XT001DRLLK,GQY1XT001EXWLL,GQY1XT001C64IK,GQY1XT001BE6BG,GQY1XT001DXVP5,GQY1XT001AWL12,GQY1XT001CQM94,GQY1XT001APIOJ,GQY1XT001AMBHT,GQY1XT001AHS2D,GQY1XT001ESQ4X,GQY1XT001AOXYK,GQY1XT001CJF2R,GQY1XT001A7FKB,GQY1XT001EKPDP,GQY1XT001BS8IN,GQY1XT001B5MG8,GQY1XT001EC7GW,GQY1XT001C2LIJ,GQY1XT001B3AKI,GQY1XT001BP12K,GQY1XT001EDQBH,GQY1XT001EYI95,GQY1XT001D6SYI,GQY1XT001D0TIT,GQY1XT001A8N55,GQY1XT001DJXON,GQY1XT001A5MOM,GQY1XT001ETX9L,GQY1XT001D4UB7,GQY1XT001BWC0C,GQY1XT001DRQLT,GQY1XT001AFEKL,GQY1XT001EAJF3,GQY1XT001BMLKV,GQY1XT001DTLTW,GQY1XT001DJQ9B,GQY1XT001BFB88,GQY1XT001DXNHJ,GQY1XT001B3NS8,GQY1XT001C3U4Y,GQY1XT001A3JFW,GQY1XT001DILWT,GQY1XT001CJM6S,GQY1XT001C4Z3E,GQY1XT001B33MN,GQY1XT001DGW2I,GQY1XT001BB7D4,GQY1XT001BOWUL,GQY1XT001BBO54,GQY1XT001DLLK5,GQY1XT001EJDXZ,GQY1XT001EDV0A,GQY1XT001DWTJE,GQY1XT001BTPLZ,GQY1XT001CBS2D,GQY1XT001DMLQI,GQY1XT001C0P9K,GQY1XT001CLEPJ,GQY1XT001ELW0B,GQY1XT001CUTEW,GQY1XT001BGUVO,GQY1XT001DDJ1H,GQY1XT001ALRIJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDBEC"; +secondCol = "GQY1XT001EDBEC,GQY1XT001COJMU,GQY1XT001EFBY5,GQY1XT001C0HEO,GQY1XT001CF3CC,GQY1XT001AHU4I,GQY1XT001CY77E,GQY1XT001EPWK1,GQY1XT001BSJJ5,GQY1XT001AT947,GQY1XT001ASKZK,GQY1XT001DZ5DW,GQY1XT001BYE2I,GQY1XT001CYCL6,GQY1XT001EMJLG,GQY1XT001DDIC4,GQY1XT001ATSPV,GQY1XT001EEOAC,GQY1XT001DOUEA,GQY1XT001CGYNQ,GQY1XT001C43K0,GQY1XT001A2KNS,GQY1XT001CRSVF,GQY1XT001BQG8E,GQY1XT001DXR54,GQY1XT001DMV6K,GQY1XT001BPFM9,GQY1XT001AJU0P,GQY1XT001EBCAJ,GQY1XT001EZ0KI,GQY1XT001CGQN2,GQY1XT001BJOLQ,GQY1XT001EYJL8,GQY1XT001CC6ZL,GQY1XT001AVA1H,GQY1XT001CSB4D,GQY1XT001C5EYP,GQY1XT001BYNMI,GQY1XT001AN36Y,GQY1XT001AI40F,GQY1XT001BJS18,GQY1XT001EUB90,GQY1XT001BBW51,GQY1XT001AVUJF,GQY1XT001DF9MO,GQY1XT001EWL5V,GQY1XT001API33,GQY1XT001C7P7S,GQY1XT001D1TS7,GQY1XT001COI8U,GQY1XT001C8AIQ,GQY1XT001CFK50,GQY1XT001ARHYN,GQY1XT001CDRQA,GQY1XT001CHTNF,GQY1XT001B8P2Z,GQY1XT001CCUDJ,GQY1XT001EJD78,GQY1XT001DU4P1,GQY1XT001DK6YB,GQY1XT001A85OS,GQY1XT001AMN2K,GQY1XT001CJYXB,GQY1XT001EVQ89,GQY1XT001BXAVS,GQY1XT001D8055,GQY1XT001D9NLB,GQY1XT001CGJTI,GQY1XT001CDEQ2,GQY1XT001CE5NQ,GQY1XT001AUZH9,GQY1XT001CKXI6,GQY1XT001DUSHY,GQY1XT001A3DK9,GQY1XT001AWC7N,GQY1XT001CZYOY,GQY1XT001B6DQF,GQY1XT001CK78W,GQY1XT001ASDPF,GQY1XT001DF0MH,GQY1XT001D2KZM,GQY1XT001CO7CB,GQY1XT001CSMV8,GQY1XT001B0RQK,GQY1XT001BHBO1,GQY1XT001CTGZI,GQY1XT001AOYFW,GQY1XT001EHAPD,GQY1XT001BSCXG,GQY1XT001BIUFY,GQY1XT001A96G5,GQY1XT001BQJFA,GQY1XT001BWYM0,GQY1XT001CMN0X,GQY1XT001AMHWK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D47YY"; +secondCol = "GQY1XT001D47YY,GQY1XT001A2R9V,GQY1XT001C91ZZ,GQY1XT001BRPJ9,GQY1XT001DL056,GQY1XT001DNB40,GQY1XT001BSE4R,GQY1XT001EKKO9,GQY1XT001CK0GD,GQY1XT001C23LW,GQY1XT001B8DRL,GQY1XT001DGX7Y,GQY1XT001AF8K4,GQY1XT001BTGK1,GQY1XT001D2MYZ,GQY1XT001D63TY,GQY1XT001CQ7EQ,GQY1XT001B4483,GQY1XT001E2C6K,GQY1XT001ALFW3,GQY1XT001BM7JR,GQY1XT001BAMD1,GQY1XT001C1TMI,GQY1XT001DXUCH,GQY1XT001DU5CW,GQY1XT001CCE0Y,GQY1XT001BRSTJ,GQY1XT001DRYK3,GQY1XT001A2MGT,GQY1XT001DQ0U8,GQY1XT001BRLFL,GQY1XT001AFIFZ,GQY1XT001D24KQ,GQY1XT001DHQJ5,GQY1XT001BVBAF,GQY1XT001EWPZW,GQY1XT001C7MYT,GQY1XT001EG880,GQY1XT001AWPCE,GQY1XT001EOLNM,GQY1XT001CQGLS,GQY1XT001CR7AO,GQY1XT001DK29L,GQY1XT001EJ7O2,GQY1XT001CYL3N,GQY1XT001CNU6W,GQY1XT001DLAG0,GQY1XT001DCF1E,GQY1XT001CDV3B,GQY1XT001CR814,GQY1XT001DJN7Y,GQY1XT001C5I4Z,GQY1XT001EX0YV,GQY1XT001DVN21,GQY1XT001AJ0Y1,GQY1XT001BFR2K,GQY1XT001B6109,GQY1XT001CGXK2,GQY1XT001EE4FT,GQY1XT001CJ068,GQY1XT001CMPUE,GQY1XT001AYQXB,GQY1XT001CVM9X,GQY1XT001B2CIR,GQY1XT001ETWVA,GQY1XT001DPERF,GQY1XT001B5QOV,GQY1XT001DIBIR,GQY1XT001BY0B2,GQY1XT001AY0VM,GQY1XT001EJLPM,GQY1XT001AVXKL,GQY1XT001AQZW9,GQY1XT001BO97D,GQY1XT001AKVCF,GQY1XT001A9RVW,GQY1XT001DZIQ9,GQY1XT001BIVYT,GQY1XT001C8O90,GQY1XT001AYJM7,GQY1XT001EMUKT,GQY1XT001DU6BF,GQY1XT001BKGCM,GQY1XT001DCOUF,GQY1XT001CTR55,GQY1XT001BM5WJ,GQY1XT001D7BR5,GQY1XT001CSZSE,GQY1XT001BG3XL,GQY1XT001BT641,GQY1XT001A1PEW,GQY1XT001BO3M1,GQY1XT001CRPFX,GQY1XT001E291Z,GQY1XT001A1RU0,GQY1XT001EVVT0,GQY1XT001EPPY9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNUHI"; +secondCol = "GQY1XT001CNUHI,GQY1XT001BG3TS,GQY1XT001BL74R,GQY1XT001DOAEA,GQY1XT001CQQXJ,GQY1XT001DH3E3,GQY1XT001DMZUU,GQY1XT001AQ0XJ,GQY1XT001C49TW,GQY1XT001AG5A3,GQY1XT001DZ2FP,GQY1XT001BO2V8,GQY1XT001B1PXM,GQY1XT001DIUP1,GQY1XT001C1PPH,GQY1XT001EMI4G,GQY1XT001DSB3I,GQY1XT001C1HW0,GQY1XT001CU1MB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH4P4"; +secondCol = "GQY1XT001BH4P4,GQY1XT001DUBZH,GQY1XT001CILKV,GQY1XT001CGYDW,GQY1XT001DXR5D,GQY1XT001EMQ15,GQY1XT001CIDKX,GQY1XT001DNI64,GQY1XT001CK935,GQY1XT001C7QV2,GQY1XT001BHR02,GQY1XT001BCT31,GQY1XT001EQ5RQ,GQY1XT001A6TES,GQY1XT001BBOI8,GQY1XT001AJTQK,GQY1XT001EFHT0,GQY1XT001DGE1I,GQY1XT001C3ESA,GQY1XT001DIBWC,GQY1XT001ERZ4V,GQY1XT001C487L,GQY1XT001A0ZRI,GQY1XT001EP6C1,GQY1XT001DUOL7,GQY1XT001C9CUN,GQY1XT001A1G3P,GQY1XT001BXTPN,GQY1XT001BB9XR,GQY1XT001A5E2N,GQY1XT001DZLVL,GQY1XT001EP5E4,GQY1XT001BZ1TD,GQY1XT001BQC91,GQY1XT001C30P2,GQY1XT001DALT3,GQY1XT001AZMSJ,GQY1XT001EFP9I,GQY1XT001AIBPQ,GQY1XT001BL75Z,GQY1XT001A5HY7,GQY1XT001EBD2P,GQY1XT001EVPHE,GQY1XT001C1W0D,GQY1XT001BTXXQ,GQY1XT001CRLNG,GQY1XT001CNQNC,GQY1XT001EACH9,GQY1XT001AJ8BW,GQY1XT001DCVVQ,GQY1XT001BRGES,GQY1XT001BHPMI,GQY1XT001CMFWE,GQY1XT001BFTQ3,GQY1XT001B80EX,GQY1XT001EO4ZD,GQY1XT001CZNKV,GQY1XT001EZJT1,GQY1XT001DF0JG,GQY1XT001BU0VO,GQY1XT001BSIV0,GQY1XT001B8D97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWI4W"; +secondCol = "GQY1XT001AWI4W,GQY1XT001B24IT,GQY1XT001EIN27,GQY1XT001ATQV5,GQY1XT001BYSVQ,GQY1XT001AYENE,GQY1XT001BXY9Z,GQY1XT001BUQ9F,GQY1XT001DIU2U,GQY1XT001D5APN,GQY1XT001AVNE0,GQY1XT001EMDU8,GQY1XT001BONF3,GQY1XT001CLTOY,GQY1XT001CZZDA,GQY1XT001EH4W2,GQY1XT001BLU5T,GQY1XT001BPP26,GQY1XT001BJVS5,GQY1XT001C680G,GQY1XT001BO4ZN,GQY1XT001CPW0Q,GQY1XT001ETB9T,GQY1XT001CCVXU,GQY1XT001DZ7B4,GQY1XT001CTY2I,GQY1XT001BOYFN,GQY1XT001CZEGW,GQY1XT001BONBY,GQY1XT001BQ8IF,GQY1XT001AMBWV,GQY1XT001CI4A0,GQY1XT001EUFQ9,GQY1XT001ECL1G,GQY1XT001DF7BI,GQY1XT001EK3B4,GQY1XT001BE7C6,GQY1XT001B5KFB,GQY1XT001AX2F0,GQY1XT001DA19Z,GQY1XT001DGPEC,GQY1XT001BK7LV,GQY1XT001CEGU1,GQY1XT001DAILL,GQY1XT001E18IQ,GQY1XT001ENOIP,GQY1XT001CDG2T,GQY1XT001B1N9B,GQY1XT001DQN1S,GQY1XT001CZSUB,GQY1XT001CNUHN,GQY1XT001BK69W,GQY1XT001A2FUQ,GQY1XT001EMHQ2,GQY1XT001DC2OS,GQY1XT001DIRDC,GQY1XT001C12SS,GQY1XT001BDJUI,GQY1XT001B7Q62,GQY1XT001BM00B,GQY1XT001D3KFB,GQY1XT001C9XR9,GQY1XT001CPYWD,GQY1XT001C79J9,GQY1XT001DETHF,GQY1XT001BKL1N,GQY1XT001DWZ38,GQY1XT001DRTHO,GQY1XT001DB0EH,GQY1XT001AWDED,GQY1XT001DLJN7,GQY1XT001AWXBP,GQY1XT001CJ6DT,GQY1XT001AMWEK,GQY1XT001EDD87,GQY1XT001BRF6T,GQY1XT001BCZ31,GQY1XT001CZPU1,GQY1XT001A0KIP,GQY1XT001CSHQ2,GQY1XT001EG2CB,GQY1XT001EAK4Z,GQY1XT001C5VJ2,GQY1XT001DNRCZ,GQY1XT001DCL2K,GQY1XT001CN4D6,GQY1XT001C80WV,GQY1XT001BMOEY,GQY1XT001AHY5Y,GQY1XT001A9AH6,GQY1XT001A6I9P,GQY1XT001ATCGK,GQY1XT001DZPMY,GQY1XT001D7WLE,GQY1XT001BAUF0,GQY1XT001CEVYP,GQY1XT001AX6OD,GQY1XT001EURZ4,GQY1XT001D6BXG,GQY1XT001CAZ1R,GQY1XT001D6DCL,GQY1XT001AF0DJ,GQY1XT001CV0AP,GQY1XT001COLVZ,GQY1XT001CUGKK,GQY1XT001BSCRG,GQY1XT001DZ46K,GQY1XT001DXX87,GQY1XT001DDAO3,GQY1XT001CS8S0,GQY1XT001CHZ8K,GQY1XT001BN3ZX,GQY1XT001BHTZP,GQY1XT001AP2BK,GQY1XT001AH5FB,GQY1XT001CEHHX,GQY1XT001DO092,GQY1XT001DR6TK,GQY1XT001AS39U,GQY1XT001EDYL8,GQY1XT001AF0XN,GQY1XT001B47AN,GQY1XT001CHC21,GQY1XT001BUGDW,GQY1XT001EWO1W,GQY1XT001ET289,GQY1XT001CGZD9,GQY1XT001C3TB8,GQY1XT001C256C,GQY1XT001ASGW8,GQY1XT001DNNXV,GQY1XT001E4QCF,GQY1XT001CHCH0,GQY1XT001BWW3H,GQY1XT001DHH1O,GQY1XT001DY13N,GQY1XT001ECBX3,GQY1XT001C69UG,GQY1XT001AH4KH,GQY1XT001EW71H,GQY1XT001AN3VF,GQY1XT001CVYDS,GQY1XT001ATN25,GQY1XT001DU5EU,GQY1XT001BAZY2,GQY1XT001C33VE,GQY1XT001APFE5,GQY1XT001EK9RV,GQY1XT001DKG8V,GQY1XT001CK6YI,GQY1XT001BCZ69,GQY1XT001AQI41,GQY1XT001AK7P1,GQY1XT001A5GXD,GQY1XT001CXNQE,GQY1XT001EVEIH,GQY1XT001CMGCE,GQY1XT001DMWP9,GQY1XT001AUFEF,GQY1XT001BINWL,GQY1XT001CYJEN,GQY1XT001E3GM3,GQY1XT001EIZ8Q,GQY1XT001C4KD8,GQY1XT001E4ARS,GQY1XT001EMKL9,GQY1XT001CS98I,GQY1XT001B4AO3,GQY1XT001DJVZ4,GQY1XT001BQK0N,GQY1XT001BBNVB,GQY1XT001B9HV5,GQY1XT001EQENX,GQY1XT001D6MXG,GQY1XT001C18SO,GQY1XT001BFQ07,GQY1XT001D1A7K,GQY1XT001CPNQQ,GQY1XT001A63TM,GQY1XT001AE521,GQY1XT001DAOUK,GQY1XT001A5R1I,GQY1XT001EI18S,GQY1XT001EBBO1,GQY1XT001BT33Y,GQY1XT001DA0ZZ,GQY1XT001DOXI7,GQY1XT001BXON2,GQY1XT001EE0S6,GQY1XT001C7G8O,GQY1XT001DE5S6,GQY1XT001DGJUY,GQY1XT001BKLZC,GQY1XT001AIQAB,GQY1XT001DGESR,GQY1XT001AM9BF,GQY1XT001D3DHS,GQY1XT001BX0L9,GQY1XT001EXGQO,GQY1XT001CDWS2,GQY1XT001BEMLI,GQY1XT001ASVKE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMRXQ"; +secondCol = "GQY1XT001AMRXQ,GQY1XT001BQSP0,GQY1XT001C2A7I,GQY1XT001B91BX,GQY1XT001DMUCQ,GQY1XT001B5PU1,GQY1XT001B6CY4,GQY1XT001DCKBW,GQY1XT001CV5ZS,GQY1XT001BQLVU,GQY1XT001B1EPZ,GQY1XT001C4CCJ,GQY1XT001ATKX5,GQY1XT001CQGSS,GQY1XT001BWUTI,GQY1XT001D9LV6,GQY1XT001C4OJ6,GQY1XT001DKVUH,GQY1XT001CH4F8,GQY1XT001CZZ37,GQY1XT001DOL4C,GQY1XT001B1UJB,GQY1XT001C9XV1,GQY1XT001A7D77,GQY1XT001DTX9H,GQY1XT001DQ0Z9,GQY1XT001A3MHK,GQY1XT001DG3F7,GQY1XT001BDZXW,GQY1XT001BMOTU,GQY1XT001A4J7V,GQY1XT001A9WDT,GQY1XT001D1BZV,GQY1XT001BIV1E,GQY1XT001ERLH8,GQY1XT001C9YZL,GQY1XT001CGRY3,GQY1XT001BO6GV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EISNU"; +secondCol = "GQY1XT001EISNU,GQY1XT001DV8XJ,GQY1XT001CNHJK,GQY1XT001BFIGI,GQY1XT001BPALL,GQY1XT001EYGHS,GQY1XT001DDOB4,GQY1XT001DCN8S,GQY1XT001A257F,GQY1XT001EWZ86,GQY1XT001DNS8U,GQY1XT001BZMBE,GQY1XT001AKZBO,GQY1XT001C99WR,GQY1XT001DPRS9,GQY1XT001CEXMP,GQY1XT001EY5DB,GQY1XT001BSAIS,GQY1XT001AP20R,GQY1XT001B4NOR,GQY1XT001C99BN,GQY1XT001ALDL3,GQY1XT001BQOL4,GQY1XT001DVV4W,GQY1XT001B4BZV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDAPN"; +secondCol = "GQY1XT001EDAPN,GQY1XT001CU99O,GQY1XT001BTPSM,GQY1XT001EKZN9,GQY1XT001B7EE1,GQY1XT001BSUNY,GQY1XT001BNEWP,GQY1XT001D1BNR,GQY1XT001ETF9K,GQY1XT001AGZRL,GQY1XT001BS1NH,GQY1XT001CNCCY,GQY1XT001C3R4Z,GQY1XT001A9T5R,GQY1XT001C0FQ2,GQY1XT001DHS4W,GQY1XT001BN2F0,GQY1XT001EGGNP,GQY1XT001DN2QS,GQY1XT001AWEMZ,GQY1XT001ERIHX,GQY1XT001CH9YY,GQY1XT001A9UQP,GQY1XT001ASU43,GQY1XT001DGGQW,GQY1XT001DK9U2,GQY1XT001A4G73,GQY1XT001COX3W,GQY1XT001BDQ5O,GQY1XT001BAY8Q,GQY1XT001B8KE3,GQY1XT001A57FB,GQY1XT001D4DRZ,GQY1XT001C6QYC,GQY1XT001CX1TI,GQY1XT001A26AJ,GQY1XT001ASELW,GQY1XT001DNEVU,GQY1XT001BWEZW,GQY1XT001BQVNR,GQY1XT001C6TTA,GQY1XT001DYL85,GQY1XT001B3F5J,GQY1XT001BHRTL,GQY1XT001E0F8A,GQY1XT001EWAFY,GQY1XT001A9YMS,GQY1XT001DJQCY,GQY1XT001DM8JE,GQY1XT001CB2P0,GQY1XT001DNA2I,GQY1XT001BMJUT,GQY1XT001EL6G0,GQY1XT001DR9YQ,GQY1XT001C6LVN,GQY1XT001BGLQH,GQY1XT001DET9D,GQY1XT001CA35F,GQY1XT001BC67O,GQY1XT001EP98Y,GQY1XT001EY7CB,GQY1XT001A2XS7,GQY1XT001BMULC,GQY1XT001E3I3U,GQY1XT001C3CCM,GQY1XT001CYYGQ,GQY1XT001DA6J1,GQY1XT001B6DXD,GQY1XT001AWY8C,GQY1XT001B4HQ5,GQY1XT001BHERC,GQY1XT001EWXFU,GQY1XT001CFVF7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E06HP"; +secondCol = "GQY1XT001E06HP,GQY1XT001AYHCM,GQY1XT001C8YKI,GQY1XT001BKY8J,GQY1XT001CGHR8,GQY1XT001AR2QF,GQY1XT001EVT8H,GQY1XT001A09TR,GQY1XT001EGE0U,GQY1XT001ARSXT,GQY1XT001C4V8J,GQY1XT001DT2DO,GQY1XT001EMMMN,GQY1XT001D59PL,GQY1XT001D0GKU,GQY1XT001CXUFA,GQY1XT001EBSI3,GQY1XT001CHV45,GQY1XT001BU2HT,GQY1XT001DH8LI,GQY1XT001DF9XR,GQY1XT001DZ4ZF,GQY1XT001D5DWX,GQY1XT001CLO6Y,GQY1XT001C1RJW,GQY1XT001EK8U9,GQY1XT001E1Y3B,GQY1XT001D0ASJ,GQY1XT001B9Q1V,GQY1XT001DUF50,GQY1XT001B9LCI,GQY1XT001AI5W2,GQY1XT001DWJAS,GQY1XT001E12JI,GQY1XT001DHG56,GQY1XT001AY3WY,GQY1XT001CH9VC,GQY1XT001CGW2P,GQY1XT001C2K55,GQY1XT001BMYUY,GQY1XT001CPTYN,GQY1XT001C2KS6,GQY1XT001BKH1L,GQY1XT001EE82X,GQY1XT001DLIOB,GQY1XT001DFTC9,GQY1XT001C9NVH,GQY1XT001C1JBF,GQY1XT001D9OJ3,GQY1XT001CTAIJ,GQY1XT001D2U9X,GQY1XT001DL7J6,GQY1XT001ANT2E,GQY1XT001DMV90,GQY1XT001ELXY6,GQY1XT001BV6EH,GQY1XT001AQX8F,GQY1XT001BIXIJ,GQY1XT001APHJD,GQY1XT001BKK7T,GQY1XT001EF2U3,GQY1XT001DPV8J,GQY1XT001D99RQ,GQY1XT001EYVDH,GQY1XT001D5QHM,GQY1XT001BIGTE,GQY1XT001AF6FI,GQY1XT001BOOQI,GQY1XT001A4N3R,GQY1XT001AN4F9,GQY1XT001CXWYE,GQY1XT001BDM84,GQY1XT001BZ4H1,GQY1XT001DGK5O,GQY1XT001A7OGN,GQY1XT001AVTN5,GQY1XT001C0GD4,GQY1XT001CDO1L,GQY1XT001AO9G8,GQY1XT001A6YDN,GQY1XT001D25DS,GQY1XT001ER8US,GQY1XT001EKEWS,GQY1XT001A5XIU,GQY1XT001DPWKP,GQY1XT001B5K6P,GQY1XT001BC5KO,GQY1XT001A87B2,GQY1XT001ENQBI,GQY1XT001DV4U9,GQY1XT001DCNR9,GQY1XT001CKS7J,GQY1XT001CIYNY,GQY1XT001CD589,GQY1XT001BESVH,GQY1XT001B42I2,GQY1XT001A2XAW,GQY1XT001AK9I1,GQY1XT001BFW1I,GQY1XT001EJ7Q1,GQY1XT001BU1WO,GQY1XT001A2AZB,GQY1XT001EUAN4,GQY1XT001ANE9D,GQY1XT001AETU1,GQY1XT001DTMWO,GQY1XT001DM0FE,GQY1XT001D282G,GQY1XT001ANP4E,GQY1XT001D3KR8,GQY1XT001CETL2,GQY1XT001DCKOL,GQY1XT001C5IP5,GQY1XT001ETQFJ,GQY1XT001C538R,GQY1XT001CM8YK,GQY1XT001A42YK,GQY1XT001AGTK9,GQY1XT001D2UGU,GQY1XT001CA9J6,GQY1XT001AUZFG,GQY1XT001BNZQ5,GQY1XT001EDUED,GQY1XT001E11HW,GQY1XT001D4IVC,GQY1XT001EI880,GQY1XT001EVJ5E,GQY1XT001BHFVM,GQY1XT001DHUR3,GQY1XT001ELVM5,GQY1XT001CYAWU,GQY1XT001CVTSF,GQY1XT001C8HZW,GQY1XT001BR83H,GQY1XT001AY4YK,GQY1XT001EYG79,GQY1XT001EL4FK,GQY1XT001A3G59,GQY1XT001EE6VF,GQY1XT001BWM9J,GQY1XT001BUI0X,GQY1XT001A7C4P,GQY1XT001ERZ39,GQY1XT001BLQ95,GQY1XT001C8D6L,GQY1XT001BLP2A,GQY1XT001DHUM1,GQY1XT001EB6BD,GQY1XT001B3CG9,GQY1XT001B1OLM,GQY1XT001DG0N2,GQY1XT001C4QEF,GQY1XT001DDQ02,GQY1XT001B8AX7,GQY1XT001BGG9D,GQY1XT001BLH0R,GQY1XT001BUUOG,GQY1XT001BQT7G,GQY1XT001DWZQG,GQY1XT001CY3PD,GQY1XT001EX7A0,GQY1XT001EMTSQ,GQY1XT001CUR18,GQY1XT001C9BMN,GQY1XT001BW8O2,GQY1XT001BGO78"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXX0D"; +secondCol = "GQY1XT001DXX0D,GQY1XT001BHB2X,GQY1XT001BTOSN,GQY1XT001AIP8P,GQY1XT001C2SPW,GQY1XT001CS8I1,GQY1XT001EH7ZP,GQY1XT001DSDYE,GQY1XT001C4L9U,GQY1XT001AXKXS,GQY1XT001C77VW,GQY1XT001BOPGV,GQY1XT001DE93N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DK76L"; +secondCol = "GQY1XT001DK76L,GQY1XT001BT3NL,GQY1XT001CIP7J,GQY1XT001AWGR3,GQY1XT001BTCVF,GQY1XT001EXNXO,GQY1XT001CD0VA,GQY1XT001BS1YE,GQY1XT001BH8I9,GQY1XT001DOL2B,GQY1XT001CNACF,GQY1XT001EGSRL,GQY1XT001DG6F9,GQY1XT001DCRAE,GQY1XT001DB3QM,GQY1XT001CT198,GQY1XT001BF6VU,GQY1XT001DLDIL,GQY1XT001EVNL5,GQY1XT001AVWYN,GQY1XT001BS35Z,GQY1XT001EVODW,GQY1XT001EPUT1,GQY1XT001BF6VX,GQY1XT001EK65Y,GQY1XT001CY4FX,GQY1XT001AWKV7,GQY1XT001BWTUQ,GQY1XT001DDMHW,GQY1XT001C8RW1,GQY1XT001C62VO,GQY1XT001A47MC,GQY1XT001D1NE0,GQY1XT001DLJBR,GQY1XT001BLBFS,GQY1XT001C85CC,GQY1XT001C91DQ,GQY1XT001B7JUH,GQY1XT001A635C,GQY1XT001D7U1V,GQY1XT001EA7L6,GQY1XT001C0M3X,GQY1XT001D2KPI,GQY1XT001ETJKT,GQY1XT001D3Q9B,GQY1XT001ANZ5D,GQY1XT001EP9PE,GQY1XT001AWKU9,GQY1XT001D894W,GQY1XT001B88O9,GQY1XT001CWH6Q,GQY1XT001ENY2E,GQY1XT001DL6EX,GQY1XT001DQ24Y,GQY1XT001DJZ2V,GQY1XT001BP8CT,GQY1XT001DY62B,GQY1XT001DZWV0,GQY1XT001CSHGZ,GQY1XT001CKPAJ,GQY1XT001BHC1X,GQY1XT001BDZ3S,GQY1XT001B14ZY,GQY1XT001AO2C8,GQY1XT001ALQBG,GQY1XT001EFCNG,GQY1XT001C6G0C,GQY1XT001BXR16,GQY1XT001B9745,GQY1XT001DEZD1,GQY1XT001A43HS,GQY1XT001CJD0G,GQY1XT001AKH0O,GQY1XT001EX95E,GQY1XT001CIE7H,GQY1XT001BUWI4,GQY1XT001DKPU0,GQY1XT001BDXT4,GQY1XT001B4KYA,GQY1XT001CQUF3,GQY1XT001CKBTI,GQY1XT001EWBBR,GQY1XT001BH4MV,GQY1XT001DPLQ0,GQY1XT001DNWR8,GQY1XT001DG1YT,GQY1XT001BGYWE,GQY1XT001AQX7F,GQY1XT001A4MB4,GQY1XT001BKEL9,GQY1XT001B2CPD,GQY1XT001BNOOM,GQY1XT001D0V8C,GQY1XT001EKBBB,GQY1XT001DAKST,GQY1XT001EHCAY,GQY1XT001B833O,GQY1XT001B3XJK,GQY1XT001D8QOM,GQY1XT001EP1VJ,GQY1XT001CVBIE,GQY1XT001DPBJK,GQY1XT001A4H0E,GQY1XT001EA0O2,GQY1XT001D3R5L,GQY1XT001D6SYL,GQY1XT001CQ03D,GQY1XT001CPWRV,GQY1XT001D89GU,GQY1XT001A5Q6Z,GQY1XT001DPZ6L,GQY1XT001E3434,GQY1XT001CYCGI,GQY1XT001EVO9Q,GQY1XT001DE5CK,GQY1XT001CL6YY,GQY1XT001EQF7Z,GQY1XT001B1F8X,GQY1XT001DDQLT,GQY1XT001BZANE,GQY1XT001COZ2I,GQY1XT001B9OKP,GQY1XT001DGFKN,GQY1XT001DWOQ3,GQY1XT001EH8DA,GQY1XT001DLNLO,GQY1XT001C5ED1,GQY1XT001BM8L0,GQY1XT001BHISD,GQY1XT001B08PL,GQY1XT001DSSP3,GQY1XT001EP0ID,GQY1XT001A15EO,GQY1XT001AZBRD,GQY1XT001A7Y43,GQY1XT001BXA42,GQY1XT001EC3X9,GQY1XT001DMG2A,GQY1XT001AQ9JN,GQY1XT001CFKXR,GQY1XT001AIAKG,GQY1XT001CE7KC,GQY1XT001DYFPU,GQY1XT001DA91O,GQY1XT001D2LQ5,GQY1XT001AMYWG,GQY1XT001DLPJX,GQY1XT001DE38B,GQY1XT001CD2H8,GQY1XT001AO5CV,GQY1XT001AOY7S,GQY1XT001BYBA3,GQY1XT001A6ZU4,GQY1XT001DBVYV,GQY1XT001BL006,GQY1XT001D5JO6,GQY1XT001BOJVF,GQY1XT001CFA36,GQY1XT001EN6DD,GQY1XT001EQB39,GQY1XT001B9FNV,GQY1XT001EJFWK,GQY1XT001CMLPS,GQY1XT001C1AAQ,GQY1XT001A2UPC,GQY1XT001CYD28,GQY1XT001AMI7X,GQY1XT001EV3IA,GQY1XT001CI5MA,GQY1XT001E0BCK,GQY1XT001B9COX,GQY1XT001BO78R,GQY1XT001DSU7N,GQY1XT001ES9F6,GQY1XT001DV3P2,GQY1XT001DIF77,GQY1XT001CV9S7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC2Z9"; +secondCol = "GQY1XT001DC2Z9,GQY1XT001ALUAN,GQY1XT001A924L,GQY1XT001C4O79,GQY1XT001DE48V,GQY1XT001DJ7JH,GQY1XT001EGZDT,GQY1XT001BTPOF,GQY1XT001DYXB6,GQY1XT001A2XA0,GQY1XT001ESGT9,GQY1XT001AUA5Y,GQY1XT001C2QNN,GQY1XT001D4UB3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8HIW"; +secondCol = "GQY1XT001D8HIW,GQY1XT001CSCNY,GQY1XT001CQOVD,GQY1XT001C6XD7,GQY1XT001CSM26,GQY1XT001BLMVF,GQY1XT001CRXZF,GQY1XT001E4J6I,GQY1XT001B2BOP,GQY1XT001ETA1P,GQY1XT001DVOZQ,GQY1XT001DQUNW,GQY1XT001AI640,GQY1XT001A2KAK,GQY1XT001DXDWS,GQY1XT001A1YDE,GQY1XT001BH8KD,GQY1XT001ERPQ6,GQY1XT001CXS1L,GQY1XT001DRK38,GQY1XT001CRBME,GQY1XT001CFOW1,GQY1XT001CCLJV,GQY1XT001DEF1J,GQY1XT001DJ84H,GQY1XT001B7I5R,GQY1XT001CKJ8T,GQY1XT001CCDEF,GQY1XT001DONVL,GQY1XT001D74H5,GQY1XT001BNKTR,GQY1XT001D64TY,GQY1XT001BSRBJ,GQY1XT001D3QDY,GQY1XT001D7MP7,GQY1XT001A6UBS,GQY1XT001A8EXK,GQY1XT001BYIW2,GQY1XT001CUCZT,GQY1XT001EUMFC,GQY1XT001DEO54,GQY1XT001ED24J,GQY1XT001ELW3Y,GQY1XT001ALP30,GQY1XT001D9S0D,GQY1XT001AHTWB,GQY1XT001BA06Q,GQY1XT001AWR4K,GQY1XT001DAMRU,GQY1XT001B3SUK,GQY1XT001DRM0C,GQY1XT001CXQU3,GQY1XT001D2N83"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYGKE"; +secondCol = "GQY1XT001CYGKE,GQY1XT001D4D67,GQY1XT001B6HGE,GQY1XT001EXVV5,GQY1XT001B37PD,GQY1XT001D3XKO,GQY1XT001A0KPE,GQY1XT001EFZUN,GQY1XT001DEEAH,GQY1XT001DJWK4,GQY1XT001ASOBJ,GQY1XT001B852F,GQY1XT001AZFF5,GQY1XT001EZ6GR,GQY1XT001APL0Q,GQY1XT001EYEZ2,GQY1XT001BPRKN,GQY1XT001CV0JF,GQY1XT001CVLM3,GQY1XT001CM2MD,GQY1XT001BM07Y,GQY1XT001BLP09,GQY1XT001A2DCW,GQY1XT001AS4GH,GQY1XT001BGS1F,GQY1XT001CG9OU,GQY1XT001A2OCB,GQY1XT001DWKM4,GQY1XT001D76EM,GQY1XT001D1R1C,GQY1XT001B5QY5,GQY1XT001EKYKF,GQY1XT001EL80G,GQY1XT001CLJMF,GQY1XT001AVOAB,GQY1XT001AKFBL,GQY1XT001DPP2X,GQY1XT001E0KCK,GQY1XT001DYMZP,GQY1XT001B9PG9,GQY1XT001EUG0S,GQY1XT001DRYIM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTAEP"; +secondCol = "GQY1XT001CTAEP,GQY1XT001A1CKV,GQY1XT001DY26M,GQY1XT001C031L,GQY1XT001AO5KL,GQY1XT001EP238,GQY1XT001CBJX0,GQY1XT001CCAFR,GQY1XT001EK8DJ,GQY1XT001DWCUH,GQY1XT001AOJIW,GQY1XT001C5I2H,GQY1XT001CLT2Q,GQY1XT001BHLWT,GQY1XT001A1SR6,GQY1XT001ATHDC,GQY1XT001CUSRS,GQY1XT001C6M4W,GQY1XT001ENHNT,GQY1XT001BGIKK,GQY1XT001EFRYJ,GQY1XT001ED9FK,GQY1XT001BNM36,GQY1XT001A7W0D,GQY1XT001D8CQW,GQY1XT001A5F6B,GQY1XT001DERCD,GQY1XT001DR8SV,GQY1XT001EVW4F,GQY1XT001BLF1R,GQY1XT001CSLN6,GQY1XT001EHQTL,GQY1XT001BC4PI,GQY1XT001DWFM1,GQY1XT001BZVKL,GQY1XT001EBDF5,GQY1XT001C9PZH,GQY1XT001BFH8L,GQY1XT001B03KS,GQY1XT001AECRV,GQY1XT001D532U,GQY1XT001BAF6O,GQY1XT001AT0F0,GQY1XT001B2ES0,GQY1XT001DEDZ9,GQY1XT001C67VQ,GQY1XT001AX5JF,GQY1XT001EYI2G,GQY1XT001BSAM4,GQY1XT001DT0IG,GQY1XT001BW5K8,GQY1XT001BF9HO,GQY1XT001C37PD,GQY1XT001DCX1X,GQY1XT001DE2EH,GQY1XT001CFUHW,GQY1XT001C3WA4,GQY1XT001ETGBC,GQY1XT001DZC33,GQY1XT001DVJ8U,GQY1XT001DPBM1,GQY1XT001D1AK0,GQY1XT001CDC2P,GQY1XT001CCRAV,GQY1XT001BKC26,GQY1XT001AOQ4I,GQY1XT001AMPSB,GQY1XT001BINVF,GQY1XT001DK0N3,GQY1XT001DQNFA,GQY1XT001CQHLY,GQY1XT001C4AHU,GQY1XT001AIP4P,GQY1XT001B7XZX,GQY1XT001CWAOH,GQY1XT001AG5H2,GQY1XT001C230P,GQY1XT001CN4SO,GQY1XT001DP8UK,GQY1XT001CAIO8,GQY1XT001A58RP,GQY1XT001ENICE,GQY1XT001B7XT4,GQY1XT001ASXID,GQY1XT001AQDSP,GQY1XT001COUD8,GQY1XT001DUA6T,GQY1XT001A6I0Y,GQY1XT001EBPFT,GQY1XT001EK655,GQY1XT001DQLY1,GQY1XT001CWAA8,GQY1XT001DJ95F,GQY1XT001EJAUJ,GQY1XT001AIGZI,GQY1XT001A3TP3,GQY1XT001C7N7G,GQY1XT001CVZJ5,GQY1XT001DTTEJ,GQY1XT001BB5NU,GQY1XT001AV3IA,GQY1XT001ELP1Q,GQY1XT001DO0VO,GQY1XT001D3UO7,GQY1XT001CQYQX,GQY1XT001BYQXZ,GQY1XT001BGHKH,GQY1XT001AHVUM,GQY1XT001CKL4D,GQY1XT001EL1LL,GQY1XT001DQSXM,GQY1XT001BLZL5,GQY1XT001BKGM2,GQY1XT001BQ8C8,GQY1XT001DK6BN,GQY1XT001BN4QO,GQY1XT001DOZL2,GQY1XT001AV7D4,GQY1XT001C16Y7,GQY1XT001DUPLW,GQY1XT001BIUAO,GQY1XT001AK9YL,GQY1XT001DUBI1,GQY1XT001ALLSH,GQY1XT001C7N7Q,GQY1XT001EUBRZ,GQY1XT001CG3EG,GQY1XT001EERXE,GQY1XT001CFQAH,GQY1XT001ALJDM,GQY1XT001C6QK0,GQY1XT001D754R,GQY1XT001BDOPU,GQY1XT001CLVEE,GQY1XT001AKOXV,GQY1XT001A81KD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHFDU"; +secondCol = "GQY1XT001CHFDU,GQY1XT001CU4YI,GQY1XT001AUOHX,GQY1XT001ED8Y5,GQY1XT001EE7VK,GQY1XT001BWZ87,GQY1XT001DN36N,GQY1XT001DJYA5,GQY1XT001AFFFO,GQY1XT001A5X1O,GQY1XT001DMCN8,GQY1XT001D7E67,GQY1XT001C6KVS,GQY1XT001BNBHW,GQY1XT001C5VRM,GQY1XT001BF1ZP,GQY1XT001CJJJF,GQY1XT001C6Q2E,GQY1XT001DI0YF,GQY1XT001EFDI2,GQY1XT001CJTNI,GQY1XT001DYOWT,GQY1XT001BG0TM,GQY1XT001A8209,GQY1XT001BI5M0,GQY1XT001APEXD,GQY1XT001AQUUJ,GQY1XT001DRSXC,GQY1XT001D0IIY,GQY1XT001BWKBU,GQY1XT001CRO0A,GQY1XT001EI8JT,GQY1XT001ARP4P,GQY1XT001CKL7V,GQY1XT001E1H8G,GQY1XT001EOCX1,GQY1XT001BKR9C,GQY1XT001A6MBI,GQY1XT001DGTMK,GQY1XT001AU0HE,GQY1XT001ASW0Z,GQY1XT001BXSCS,GQY1XT001BX7WR,GQY1XT001BFVDT,GQY1XT001DHO5P,GQY1XT001CNHJN,GQY1XT001AZ476,GQY1XT001D2WA3,GQY1XT001BQ74S,GQY1XT001BK74G,GQY1XT001DH5ZC,GQY1XT001A2ZPH,GQY1XT001CMVLV,GQY1XT001DUFLC,GQY1XT001AFE2Y,GQY1XT001EBHF2,GQY1XT001AOZXF,GQY1XT001CF6X5,GQY1XT001D248Q,GQY1XT001B6JZ4,GQY1XT001CCFQT,GQY1XT001ALW3E,GQY1XT001D2CMV,GQY1XT001D06LX,GQY1XT001DQ11H,GQY1XT001DVRKO,GQY1XT001AUHR6,GQY1XT001CRRB6,GQY1XT001AF7VS,GQY1XT001CBMC0,GQY1XT001AEDB6,GQY1XT001C9N37,GQY1XT001C0ZAZ,GQY1XT001APHRF,GQY1XT001EV9XI,GQY1XT001BDAZU,GQY1XT001AIR4Y,GQY1XT001ESTMW,GQY1XT001DJ6F2,GQY1XT001CL54U,GQY1XT001AELV3,GQY1XT001D26VG,GQY1XT001D4YI2,GQY1XT001DJ1CP,GQY1XT001D04M7,GQY1XT001B4N6V,GQY1XT001BKRPA,GQY1XT001AQDWH,GQY1XT001DOM43,GQY1XT001DU56E,GQY1XT001EAEJX,GQY1XT001B7USS,GQY1XT001B5S0Y,GQY1XT001BBFPK,GQY1XT001EHNXL,GQY1XT001BG09O,GQY1XT001BNE6D,GQY1XT001ENBF3,GQY1XT001DIB35,GQY1XT001D1VKX,GQY1XT001EEODL,GQY1XT001A4P4Q,GQY1XT001A4ZG2,GQY1XT001AV00E,GQY1XT001BHKH4,GQY1XT001CVGXO,GQY1XT001ATZ34,GQY1XT001EF8LU,GQY1XT001CRHKT,GQY1XT001BOGNW,GQY1XT001ALB91,GQY1XT001DNVRF,GQY1XT001B5MML,GQY1XT001A2BS7,GQY1XT001EQVZX,GQY1XT001EOWJC,GQY1XT001CLV3E,GQY1XT001BT9B1,GQY1XT001DP761,GQY1XT001BOBH4,GQY1XT001B1967,GQY1XT001AD217,GQY1XT001BTV1E,GQY1XT001A0JKS,GQY1XT001DMRE0,GQY1XT001BLAPO,GQY1XT001DBQUY,GQY1XT001AMYFZ,GQY1XT001CPOHO,GQY1XT001AP1V2,GQY1XT001AOMHA,GQY1XT001ET1I6,GQY1XT001COHFX,GQY1XT001EEGQ6,GQY1XT001EI3ZG,GQY1XT001BZMG3,GQY1XT001BSKVP,GQY1XT001C3N3X,GQY1XT001EZLA6,GQY1XT001ANXVX,GQY1XT001BVUKH,GQY1XT001CR6N0,GQY1XT001EHJNH,GQY1XT001BWBH9,GQY1XT001AVGOY,GQY1XT001DR7YI,GQY1XT001C6N1M,GQY1XT001D3D5E,GQY1XT001AFA8J,GQY1XT001BLXB4,GQY1XT001DVE2J,GQY1XT001BNOX5,GQY1XT001DOVCH,GQY1XT001A0TZH,GQY1XT001BKUMS,GQY1XT001A9RLF,GQY1XT001DWL54,GQY1XT001B0RPI,GQY1XT001C4GZ9,GQY1XT001DSPCV,GQY1XT001B1SZL,GQY1XT001AQ3LA,GQY1XT001EK0HO,GQY1XT001AJJ3N,GQY1XT001C1PU4,GQY1XT001AQ5PM,GQY1XT001ELWMM,GQY1XT001DS60A,GQY1XT001DHC1G,GQY1XT001CAWKF,GQY1XT001CW03P,GQY1XT001ATECX,GQY1XT001AH519,GQY1XT001EN7PN,GQY1XT001D938A,GQY1XT001EWO92,GQY1XT001C129D,GQY1XT001C8EH4,GQY1XT001CHJJ4,GQY1XT001D3Y9G,GQY1XT001ETV13,GQY1XT001DS7CU,GQY1XT001BJCAY,GQY1XT001AUHYJ,GQY1XT001A0CP6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAHA5"; +secondCol = 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XT001EL190,GQY1XT001ATNRS,GQY1XT001A5MJX,GQY1XT001AJDHX,GQY1XT001DDMNO,GQY1XT001BWOBW,GQY1XT001EOACE,GQY1XT001D0X83,GQY1XT001ELNW7,GQY1XT001C5VJN,GQY1XT001EZX81,GQY1XT001A5I43,GQY1XT001DDQOP,GQY1XT001EB6W1,GQY1XT001EQ4VS,GQY1XT001AJ5ZD,GQY1XT001EJVQK,GQY1XT001EZSKY,GQY1XT001A4JRH,GQY1XT001A6BCT,GQY1XT001DOZUO,GQY1XT001BFBWD,GQY1XT001CO6P7,GQY1XT001BNQBP,GQY1XT001DEEUK,GQY1XT001BXJG7,GQY1XT001EVA3P,GQY1XT001DY6DF,GQY1XT001AWUB8,GQY1XT001CU7SO,GQY1XT001CU6UK,GQY1XT001CLRS3,GQY1XT001BJW43,GQY1XT001BHMQB,GQY1XT001B6NT6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU3JG"; +secondCol = "GQY1XT001AU3JG,GQY1XT001BNWVQ,GQY1XT001EEL5S,GQY1XT001BM6L3,GQY1XT001D866L,GQY1XT001BMH0L,GQY1XT001EWP1I,GQY1XT001EBRQ1,GQY1XT001CIPRW,GQY1XT001DGQVN,GQY1XT001BTCF7,GQY1XT001A9LBO,GQY1XT001DYBXM,GQY1XT001C4CWG,GQY1XT001CJAGP,GQY1XT001D64EO,GQY1XT001B653M,GQY1XT001CHIIK,GQY1XT001D83CD,GQY1XT001AZO0C,GQY1XT001A4S7D,GQY1XT001EMZHT,GQY1XT001CISKO,GQY1XT001AIKKB,GQY1XT001BU7FL,GQY1XT001CBTY1,GQY1XT001CDUI3,GQY1XT001CL497,GQY1XT001BNDNC,GQY1XT001AYASJ,GQY1XT001BYF1T,GQY1XT001EUXT8,GQY1XT001A007D,GQY1XT001CR058,GQY1XT001DKC0D,GQY1XT001BL10G,GQY1XT001B0XJ2,GQY1XT001BUMQV,GQY1XT001AZTV9,GQY1XT001CAUWE,GQY1XT001ETACX,GQY1XT001CVEJF,GQY1XT001CTYML,GQY1XT001CXI7U,GQY1XT001BV33R,GQY1XT001DNIL3,GQY1XT001DJCT9,GQY1XT001CL5VD,GQY1XT001AW2NF,GQY1XT001C6XYE,GQY1XT001DRPX7,GQY1XT001CZBH4,GQY1XT001B02L7,GQY1XT001A39P1,GQY1XT001C1EIK,GQY1XT001AVCU4,GQY1XT001BRI7C,GQY1XT001CZH29,GQY1XT001DNMC9,GQY1XT001DNJ5T,GQY1XT001A18Z9,GQY1XT001EERTS,GQY1XT001CIEF3,GQY1XT001BA98B,GQY1XT001B5AV1,GQY1XT001CMG58,GQY1XT001EN2SJ,GQY1XT001BNUB7,GQY1XT001AK7AJ,GQY1XT001D5FJI,GQY1XT001CMHGR,GQY1XT001BG0KH,GQY1XT001AZB0F,GQY1XT001AWE6U,GQY1XT001C5NXT,GQY1XT001CF17D,GQY1XT001BPVEW,GQY1XT001B2S33,GQY1XT001DCIZZ,GQY1XT001B3VBW,GQY1XT001DC1PI,GQY1XT001BAMR8,GQY1XT001ALPEX,GQY1XT001CXJ5K,GQY1XT001CB0HB,GQY1XT001B3SX1,GQY1XT001ELEOD,GQY1XT001DWEQJ,GQY1XT001AWDS1,GQY1XT001A0IQ3,GQY1XT001A785L,GQY1XT001B625H,GQY1XT001CJQV2,GQY1XT001DANI8,GQY1XT001BJOTG,GQY1XT001CVNSG,GQY1XT001CCSZC,GQY1XT001DCX1O,GQY1XT001EQUIN,GQY1XT001CX0WM,GQY1XT001CBOTG,GQY1XT001BSVM9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7KLW"; +secondCol = "GQY1XT001A7KLW,GQY1XT001CJ0W8,GQY1XT001C7I7C,GQY1XT001BXL1C,GQY1XT001ER6I4,GQY1XT001EJM4U,GQY1XT001DS09Q,GQY1XT001D3XFT,GQY1XT001B0X1I,GQY1XT001DCQAY,GQY1XT001AMGO0,GQY1XT001BI31C,GQY1XT001BMLPM,GQY1XT001ETS71,GQY1XT001CC8EJ,GQY1XT001BUADM,GQY1XT001EUOP6,GQY1XT001CO2IY,GQY1XT001EG43F,GQY1XT001DCBYW,GQY1XT001CYAH4,GQY1XT001BNB4U,GQY1XT001DGCW6,GQY1XT001BYCEC,GQY1XT001BKJJ3,GQY1XT001EY7PG,GQY1XT001BJPUA,GQY1XT001EAUOZ,GQY1XT001A0UK6,GQY1XT001DQROY,GQY1XT001A0RCL,GQY1XT001C7DN9,GQY1XT001BRVOF,GQY1XT001ELDYG,GQY1XT001D1HVF,GQY1XT001BCONN,GQY1XT001B4NZG,GQY1XT001AK7J0,GQY1XT001EC2PC,GQY1XT001AYW8L,GQY1XT001DTQN5,GQY1XT001EXCBF,GQY1XT001EBI5J,GQY1XT001BFE76,GQY1XT001BAA24,GQY1XT001EG9XX,GQY1XT001DH6IC,GQY1XT001AGT4E,GQY1XT001C9LOG,GQY1XT001BXGCU,GQY1XT001ELI06,GQY1XT001B2PH7,GQY1XT001ANXTJ,GQY1XT001C1I1Q,GQY1XT001B5M3N,GQY1XT001CZR7N,GQY1XT001BLDJG,GQY1XT001D6MPY,GQY1XT001D9ITG,GQY1XT001CHPFI,GQY1XT001CILV4,GQY1XT001EF01U,GQY1XT001D2L7I,GQY1XT001EOHN1,GQY1XT001EWBPN,GQY1XT001CO9VU,GQY1XT001D3HL9,GQY1XT001AJR3W,GQY1XT001BB70F,GQY1XT001C8461,GQY1XT001B33O4,GQY1XT001CC90V,GQY1XT001EI9ME,GQY1XT001AXQSO,GQY1XT001BLP33,GQY1XT001B2JN1,GQY1XT001DN7TD,GQY1XT001C1DIA,GQY1XT001EEKNX,GQY1XT001DII1D,GQY1XT001DHTMH,GQY1XT001CWOW6,GQY1XT001CH1T9,GQY1XT001BPOA6,GQY1XT001AZ57E,GQY1XT001A5BCP,GQY1XT001B70QB,GQY1XT001BRT3T,GQY1XT001AQ2DW,GQY1XT001C55ES,GQY1XT001EW1UG,GQY1XT001EI4Z0,GQY1XT001BHEYF,GQY1XT001BBWLC,GQY1XT001DWNNE,GQY1XT001EXPK5,GQY1XT001B6O6Z,GQY1XT001BEESA,GQY1XT001AOLQ9,GQY1XT001EO9JY,GQY1XT001DZB37,GQY1XT001ELXDZ,GQY1XT001ETXTT,GQY1XT001BYXQ8,GQY1XT001CYYK8,GQY1XT001BVN5T,GQY1XT001EBVXE,GQY1XT001EFRUR,GQY1XT001CRKN9,GQY1XT001AP7FB,GQY1XT001A0ZKP,GQY1XT001B4PTS,GQY1XT001DHR24,GQY1XT001B0XGM,GQY1XT001D4YXP,GQY1XT001EIIR3,GQY1XT001CF1JA,GQY1XT001ESK4K,GQY1XT001CP8J1,GQY1XT001D1DGV,GQY1XT001EAO8J,GQY1XT001AXXNH,GQY1XT001A32ZA,GQY1XT001AOPQP,GQY1XT001AFNIJ,GQY1XT001A91JR,GQY1XT001EZRN8,GQY1XT001B6UTM,GQY1XT001DFBVD,GQY1XT001BYOKG,GQY1XT001AOAKB,GQY1XT001BJWNA,GQY1XT001A4DKD,GQY1XT001A386L,GQY1XT001APIG8,GQY1XT001D3JM8,GQY1XT001BG6VG,GQY1XT001D25Z9,GQY1XT001DAQM4,GQY1XT001DVF35,GQY1XT001ECTP6,GQY1XT001EDUKO,GQY1XT001C2GCP,GQY1XT001EYQWR,GQY1XT001CXR2Y,GQY1XT001A3VHD,GQY1XT001BAT7V,GQY1XT001BY127,GQY1XT001EAOGP,GQY1XT001C3M5O,GQY1XT001A6JGH,GQY1XT001DWP1B,GQY1XT001ANUDY,GQY1XT001BLQOC,GQY1XT001ARR2L,GQY1XT001BFI60,GQY1XT001E18DB,GQY1XT001AKTW8,GQY1XT001C0QSD,GQY1XT001A5FWB,GQY1XT001AOXB7,GQY1XT001EJGMY,GQY1XT001CPXBB,GQY1XT001A2XHV,GQY1XT001D7Y9L,GQY1XT001BG2MC,GQY1XT001AOO7U,GQY1XT001ASTNM,GQY1XT001ECZZI,GQY1XT001A592F,GQY1XT001BV26B,GQY1XT001AZ9X5,GQY1XT001ALL8N,GQY1XT001A5ML4,GQY1XT001DV328,GQY1XT001ESM8A,GQY1XT001BK3VM,GQY1XT001EOMY3,GQY1XT001BBLRK,GQY1XT001BP5IF,GQY1XT001BX24Y,GQY1XT001DNMO5,GQY1XT001DM8GB,GQY1XT001DW7LZ,GQY1XT001BSFJC,GQY1XT001BDKON,GQY1XT001BGDYE,GQY1XT001EOTU6,GQY1XT001BCPQQ,GQY1XT001D9PRJ,GQY1XT001DXDHQ,GQY1XT001BTCAH,GQY1XT001D2DDR,GQY1XT001BRXT0,GQY1XT001CTBG4,GQY1XT001CA428,GQY1XT001B29WQ,GQY1XT001EGIEO,GQY1XT001EB0YN,GQY1XT001D29BH,GQY1XT001CFKZG,GQY1XT001EQ6TF,GQY1XT001AG02R,GQY1XT001A1YUM,GQY1XT001END07,GQY1XT001DSSCO,GQY1XT001D7COE,GQY1XT001CUNJL,GQY1XT001CQ1DV,GQY1XT001C8PT7,GQY1XT001BR9OL,GQY1XT001B2UB5,GQY1XT001DV9ZW,GQY1XT001EABQ1,GQY1XT001BFJBK,GQY1XT001BCHF0,GQY1XT001A8SLD,GQY1XT001BSDNH,GQY1XT001EYP0Q,GQY1XT001BMJRQ,GQY1XT001BDS2U,GQY1XT001B6DR6,GQY1XT001A73AD,GQY1XT001AOK62,GQY1XT001EOJV8,GQY1XT001BYL9Q,GQY1XT001EXQEP,GQY1XT001CCQB1,GQY1XT001EMSPO,GQY1XT001BXCZ7,GQY1XT001CV5HS,GQY1XT001CRS8K,GQY1XT001CRU9L,GQY1XT001C3YKU,GQY1XT001A3135,GQY1XT001DF928,GQY1XT001A5ILB,GQY1XT001EE6NE,GQY1XT001DCJXW,GQY1XT001D4S1M,GQY1XT001BZOL4,GQY1XT001BGI1K,GQY1XT001DWN4Q,GQY1XT001D5U2Z,GQY1XT001DADQ8,GQY1XT001CLBBE,GQY1XT001C4L2D,GQY1XT001C8FPO,GQY1XT001CEQUG,GQY1XT001EM7TU,GQY1XT001D9CKD,GQY1XT001A09IF,GQY1XT001DSAKW,GQY1XT001CPYLG,GQY1XT001CLJTR,GQY1XT001ECFJL,GQY1XT001AEJN8,GQY1XT001A8CXP,GQY1XT001CZZP1,GQY1XT001CKX1S,GQY1XT001BJDHM,GQY1XT001A7RLQ,GQY1XT001DL2FY,GQY1XT001C1DQ8,GQY1XT001AJ2D7,GQY1XT001DKDJZ,GQY1XT001B8ECR,GQY1XT001D52D6,GQY1XT001A1MRA,GQY1XT001D0G65,GQY1XT001CK75F,GQY1XT001BF3TA,GQY1XT001D6G30,GQY1XT001CT56M,GQY1XT001BJW93,GQY1XT001B9P0E,GQY1XT001DBOO7,GQY1XT001AJGCS,GQY1XT001CKW3J,GQY1XT001ENSAS,GQY1XT001EWBD2,GQY1XT001AD897,GQY1XT001EAFQP,GQY1XT001EX4AQ,GQY1XT001A13Q6,GQY1XT001E1OUI,GQY1XT001DVBX2,GQY1XT001DGS4F,GQY1XT001DAZ41,GQY1XT001CJIG9,GQY1XT001BWOHD,GQY1XT001BSOAO,GQY1XT001A8X0Z,GQY1XT001ANDVM,GQY1XT001DOTXW,GQY1XT001EY7AI,GQY1XT001C9SAI,GQY1XT001BFAQ8,GQY1XT001EXC5U,GQY1XT001DJ7OC,GQY1XT001AKYT2,GQY1XT001BGJN1,GQY1XT001BRS9A,GQY1XT001BG9TC,GQY1XT001D4OIW,GQY1XT001EL5VK,GQY1XT001A3M8U,GQY1XT001BW3BM,GQY1XT001BEGD8,GQY1XT001AYAYR,GQY1XT001CV9AW,GQY1XT001DWDYD,GQY1XT001AOL9M,GQY1XT001A6AG3,GQY1XT001DLR0Z,GQY1XT001CVHG7,GQY1XT001B995V,GQY1XT001EP7JP,GQY1XT001A7BN4,GQY1XT001A5RSX,GQY1XT001EYDG8,GQY1XT001CEMT2,GQY1XT001BD01X,GQY1XT001ER260,GQY1XT001D1JUQ,GQY1XT001DR3NG,GQY1XT001BDMEG,GQY1XT001BH5NW,GQY1XT001DOQH8,GQY1XT001DYA08,GQY1XT001E0EU5,GQY1XT001D17KA,GQY1XT001BSHMN,GQY1XT001B53LR,GQY1XT001B1K5N,GQY1XT001AYK7T,GQY1XT001AQ6Y7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVNLV"; +secondCol = "GQY1XT001EVNLV,GQY1XT001AQI1Y,GQY1XT001CVGZG,GQY1XT001CLACF,GQY1XT001DCG4I,GQY1XT001ETXWB,GQY1XT001CLKOQ,GQY1XT001EO4DF,GQY1XT001BBILI,GQY1XT001DHA2W,GQY1XT001D6Y6N,GQY1XT001ENYAT,GQY1XT001A1Z5B,GQY1XT001ECAUX,GQY1XT001BPDTW,GQY1XT001D557Q,GQY1XT001C6Q1S,GQY1XT001C7N0C,GQY1XT001ESYYZ,GQY1XT001CV8QK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZCL2"; +secondCol = "GQY1XT001DZCL2,GQY1XT001BKZ8R,GQY1XT001DE6GH,GQY1XT001EDKXO,GQY1XT001ARK2S,GQY1XT001EH09N,GQY1XT001DQICN,GQY1XT001EZUFP,GQY1XT001DIBI1,GQY1XT001BWFG9,GQY1XT001AT1ZW,GQY1XT001EFH7P,GQY1XT001DJTL0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUZOP"; +secondCol = "GQY1XT001DUZOP,GQY1XT001B1N26,GQY1XT001AUF5X,GQY1XT001CD79I,GQY1XT001EAGTV,GQY1XT001D2RQH,GQY1XT001BCBEO,GQY1XT001A1W78,GQY1XT001C6PZK,GQY1XT001ASNOP,GQY1XT001BM62H,GQY1XT001B8SU1,GQY1XT001EQWY1,GQY1XT001CVUOD,GQY1XT001EOUXG,GQY1XT001BXPBA,GQY1XT001AM4V3,GQY1XT001EQHJ2,GQY1XT001DP6WD,GQY1XT001AQKAV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD4OA"; +secondCol = "GQY1XT001DD4OA,GQY1XT001B45ST,GQY1XT001C9T7V,GQY1XT001B5NN2,GQY1XT001BYNQ0,GQY1XT001CZQML,GQY1XT001B6ZJP,GQY1XT001CVPL6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLQ8T"; +secondCol = "GQY1XT001CLQ8T,GQY1XT001B458K,GQY1XT001B5EF9,GQY1XT001ASP4U,GQY1XT001DLY87,GQY1XT001CFQOE,GQY1XT001C95TO,GQY1XT001AXO05,GQY1XT001EKF7N,GQY1XT001BVQBH,GQY1XT001EVUGZ,GQY1XT001C4K54,GQY1XT001DGLBQ,GQY1XT001EI7RO,GQY1XT001BE4L0,GQY1XT001EV73A,GQY1XT001DBPT5,GQY1XT001B3VHX,GQY1XT001AFHEI,GQY1XT001EU5UY,GQY1XT001BMB8N,GQY1XT001ENNFE,GQY1XT001EB7UF,GQY1XT001EODIQ,GQY1XT001E3R8Y,GQY1XT001EN7DS,GQY1XT001DJNWU,GQY1XT001C7BBF,GQY1XT001C3W38,GQY1XT001EZYWZ,GQY1XT001AX8KP,GQY1XT001C2I50,GQY1XT001A6PE4,GQY1XT001BP9Q3,GQY1XT001EF2N6,GQY1XT001BUYGV,GQY1XT001DE0G1,GQY1XT001BPBK9,GQY1XT001E2NQY,GQY1XT001E31W4,GQY1XT001BQ27O,GQY1XT001EZUVO,GQY1XT001AZFXM,GQY1XT001CX91N,GQY1XT001BETPJ,GQY1XT001BBIFL,GQY1XT001AG6WH,GQY1XT001BSJ5B,GQY1XT001ES2PG,GQY1XT001ATAS6,GQY1XT001BGOKL,GQY1XT001E00AJ,GQY1XT001C02US,GQY1XT001E2634,GQY1XT001AU47F,GQY1XT001CD285,GQY1XT001D0OLU,GQY1XT001AJQZD,GQY1XT001EJEKJ,GQY1XT001B95FD,GQY1XT001DQTB4,GQY1XT001DYJ68,GQY1XT001D07MO,GQY1XT001B9G8X,GQY1XT001B1IUF,GQY1XT001AUFB3,GQY1XT001EE44S,GQY1XT001DPFOU,GQY1XT001CQMHK,GQY1XT001CAAZW,GQY1XT001CP3DD,GQY1XT001EG9FQ,GQY1XT001EH6WQ,GQY1XT001C1MCN,GQY1XT001B1ZAD,GQY1XT001CPBI4,GQY1XT001BS0JU,GQY1XT001BWSUS,GQY1XT001BRGQI,GQY1XT001CKH4Z,GQY1XT001B3WTP,GQY1XT001ARHZ8,GQY1XT001BJV28,GQY1XT001B2F26,GQY1XT001DDA0X,GQY1XT001CUYEL,GQY1XT001AO56F,GQY1XT001AGFQY,GQY1XT001BN3UU,GQY1XT001EGYYG,GQY1XT001BRTYD,GQY1XT001AJX7Q,GQY1XT001CDZK4,GQY1XT001DLARV,GQY1XT001BBY0T,GQY1XT001EBSJ5,GQY1XT001BJPGB,GQY1XT001A5K6E,GQY1XT001B8UWC,GQY1XT001AD256,GQY1XT001E11PU,GQY1XT001BE6IZ,GQY1XT001EW9ND,GQY1XT001EMEOR,GQY1XT001ELG8B,GQY1XT001B8W50,GQY1XT001AW11R,GQY1XT001BMCNB,GQY1XT001D5WQ3,GQY1XT001DZOAV,GQY1XT001BW80F,GQY1XT001CR2M0,GQY1XT001BCP7N,GQY1XT001AVRHW,GQY1XT001EZZ3I,GQY1XT001CDCF8,GQY1XT001ELZKX,GQY1XT001B5SB6,GQY1XT001EU3TW,GQY1XT001DBZ1O,GQY1XT001CE9DK,GQY1XT001ELHLP,GQY1XT001BGFIP,GQY1XT001COQ8M,GQY1XT001DY6H0,GQY1XT001D8WS6,GQY1XT001BI6TS,GQY1XT001A2WBO,GQY1XT001A6ZLD,GQY1XT001BQSM6,GQY1XT001D5RLM,GQY1XT001CLWQ0,GQY1XT001AN0IP,GQY1XT001EH2JQ,GQY1XT001DMRR7,GQY1XT001BEPDA,GQY1XT001BPVQQ,GQY1XT001EYL59,GQY1XT001DGAII,GQY1XT001DEYIB,GQY1XT001CHL2P,GQY1XT001C39D8,GQY1XT001A0ZOJ,GQY1XT001EGFGY,GQY1XT001B2GZV,GQY1XT001CLZOK,GQY1XT001B025J,GQY1XT001CPQB3,GQY1XT001DQOB8,GQY1XT001CX16F,GQY1XT001BXI5F,GQY1XT001A62P9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CI64O"; +secondCol = "GQY1XT001CI64O,GQY1XT001AG54P,GQY1XT001DGK5K,GQY1XT001BLQUS,GQY1XT001EGMNN,GQY1XT001DJRER,GQY1XT001D1YYT,GQY1XT001B3CPI,GQY1XT001AZI80,GQY1XT001AN5XU,GQY1XT001DI03D,GQY1XT001BGKXF,GQY1XT001D11XY,GQY1XT001AN36U,GQY1XT001ATTR3,GQY1XT001BNWUI,GQY1XT001DFRWI,GQY1XT001CQ9PV,GQY1XT001BO0D4,GQY1XT001D0HN9,GQY1XT001B5DGU,GQY1XT001D6PIY,GQY1XT001BM2SX,GQY1XT001C6OI7,GQY1XT001CG126,GQY1XT001DLNY0,GQY1XT001EBVUU,GQY1XT001DRMJ8,GQY1XT001BPJFJ,GQY1XT001CSRHG,GQY1XT001AFWSN,GQY1XT001E1MRS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C21E5"; +secondCol = "GQY1XT001C21E5,GQY1XT001AXT05,GQY1XT001DDRLH,GQY1XT001BGHS9,GQY1XT001CCXE9,GQY1XT001C0EJA,GQY1XT001AMAL7,GQY1XT001B9WJV,GQY1XT001CJA38,GQY1XT001D5F43,GQY1XT001BK544,GQY1XT001BSR28,GQY1XT001CJO11,GQY1XT001B0AH1,GQY1XT001BN09W,GQY1XT001B3J6C,GQY1XT001CPXSA,GQY1XT001AN30D,GQY1XT001DAFMI,GQY1XT001CEU8M,GQY1XT001DVLEG,GQY1XT001BYSAM,GQY1XT001A8BSX,GQY1XT001AKI8X,GQY1XT001EYM2L,GQY1XT001CGQ14,GQY1XT001EST0E,GQY1XT001CTL7Z,GQY1XT001DIKYI,GQY1XT001A9EY7,GQY1XT001AOXZZ,GQY1XT001AOPX4,GQY1XT001CCF2Q,GQY1XT001DM6F9,GQY1XT001DITHL,GQY1XT001BB7U9,GQY1XT001E239P,GQY1XT001BAMSE,GQY1XT001A83HJ,GQY1XT001EKTZ0,GQY1XT001D00NQ,GQY1XT001A8E3W,GQY1XT001AV5WD,GQY1XT001DTSXK,GQY1XT001DOK73,GQY1XT001EO29B,GQY1XT001C3UU1,GQY1XT001E22B2,GQY1XT001B0D6G,GQY1XT001BH5W9,GQY1XT001CRHXH,GQY1XT001C56ZM,GQY1XT001BDS9K,GQY1XT001DZ2PG,GQY1XT001DVWRU,GQY1XT001CUO0E,GQY1XT001EYANH,GQY1XT001DKCJE,GQY1XT001A9FGK,GQY1XT001B4XUY,GQY1XT001DIJ3M,GQY1XT001B72HA,GQY1XT001EWH84,GQY1XT001B9GGF,GQY1XT001CCXKB,GQY1XT001A0DHT,GQY1XT001BZQ9C,GQY1XT001EJCIG,GQY1XT001EZLRM,GQY1XT001CND24,GQY1XT001BKS9V,GQY1XT001CJKOB,GQY1XT001ES1YQ,GQY1XT001DZM4N,GQY1XT001DOA05,GQY1XT001BGS7D,GQY1XT001CLG6F,GQY1XT001EN4B0,GQY1XT001A5BUF,GQY1XT001AGK2Z,GQY1XT001COFP1,GQY1XT001C1XYD,GQY1XT001DU56B,GQY1XT001CIAKX,GQY1XT001AJ2B8,GQY1XT001BINL2,GQY1XT001E020Y,GQY1XT001EZOOM,GQY1XT001B2TR1,GQY1XT001EZ21Q,GQY1XT001C5SRW,GQY1XT001A7VRF,GQY1XT001APWFG,GQY1XT001D1OXR,GQY1XT001CKA2A,GQY1XT001EIDAZ,GQY1XT001A9FTH,GQY1XT001CKUKK,GQY1XT001B8906,GQY1XT001BKY9C,GQY1XT001C7UWC,GQY1XT001CCTV8,GQY1XT001CML68,GQY1XT001DLMZ9,GQY1XT001CJ9T5,GQY1XT001A2YGN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BATAU"; +secondCol = "GQY1XT001BATAU,GQY1XT001D529A,GQY1XT001CECXI,GQY1XT001D6TFA,GQY1XT001DHMZN,GQY1XT001DB1R3,GQY1XT001DLZFT,GQY1XT001CLKVI,GQY1XT001ETS17,GQY1XT001AS4EB,GQY1XT001CRWD8,GQY1XT001CJ8O1,GQY1XT001BMZ9U,GQY1XT001D1N7R,GQY1XT001A7FXR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2L2T"; +secondCol = "GQY1XT001B2L2T,GQY1XT001C4LLQ,GQY1XT001BA96J,GQY1XT001D2CSU,GQY1XT001AID1N,GQY1XT001CRIJ2,GQY1XT001DNRCD,GQY1XT001EOGGT,GQY1XT001BLC27,GQY1XT001AGXR1,GQY1XT001DSE19,GQY1XT001CTLMS,GQY1XT001EF793"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKTYL"; +secondCol = "GQY1XT001EKTYL,GQY1XT001CGL3P,GQY1XT001EZBSA,GQY1XT001DYZSR,GQY1XT001BNNOL,GQY1XT001ET2BM,GQY1XT001BZVUI,GQY1XT001CH3PR,GQY1XT001D1TZA,GQY1XT001CXBD3,GQY1XT001BPCQF,GQY1XT001B3PAF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH08T"; +secondCol = "GQY1XT001EH08T,GQY1XT001DTA5T,GQY1XT001DX3G3,GQY1XT001DC7CZ,GQY1XT001AX7O5,GQY1XT001E1XZM,GQY1XT001EGSNL,GQY1XT001AVW14,GQY1XT001EH9AA,GQY1XT001D773O,GQY1XT001BVHEP,GQY1XT001C5W4L,GQY1XT001DNB5E,GQY1XT001CTJ2O,GQY1XT001BFBNP,GQY1XT001EPNR1,GQY1XT001BUXJ1,GQY1XT001DWAO4,GQY1XT001CCNNB,GQY1XT001A11IP,GQY1XT001CYCUT,GQY1XT001BT20L,GQY1XT001BNSDB,GQY1XT001CSL1W,GQY1XT001EY2NI,GQY1XT001AK2QI,GQY1XT001BW3Q3,GQY1XT001BYUY6,GQY1XT001DH8S6,GQY1XT001DZFN4,GQY1XT001DP51S,GQY1XT001AMEV1,GQY1XT001DN9DC,GQY1XT001CHCZ7,GQY1XT001DHOH4,GQY1XT001CLBKP,GQY1XT001DT3CA,GQY1XT001AJA9A,GQY1XT001B5I1Z,GQY1XT001BPBLI,GQY1XT001CQLK4,GQY1XT001AYUFZ,GQY1XT001CVTN0,GQY1XT001ELMO1,GQY1XT001D09Z2,GQY1XT001EIK6L,GQY1XT001B60KP,GQY1XT001DZUYK,GQY1XT001DKUF5,GQY1XT001CXO9R,GQY1XT001EFEUQ,GQY1XT001B0E9Q,GQY1XT001C2BK3,GQY1XT001E0XPM,GQY1XT001EIPR6,GQY1XT001C1MBO,GQY1XT001DT1EV,GQY1XT001CWTBQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBAXG"; +secondCol = "GQY1XT001EBAXG,GQY1XT001AO34D,GQY1XT001D0QP8,GQY1XT001DF7C2,GQY1XT001CXR4W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZX4H"; +secondCol = "GQY1XT001DZX4H,GQY1XT001DMIC7,GQY1XT001DLN73,GQY1XT001DF230,GQY1XT001CONYP,GQY1XT001D93Q9,GQY1XT001CQYAC,GQY1XT001BJNH5,GQY1XT001CNQRZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX9HF"; +secondCol = "GQY1XT001DX9HF,GQY1XT001AWIQJ,GQY1XT001BI0SX,GQY1XT001EYJYE,GQY1XT001A297J,GQY1XT001EOW0L,GQY1XT001C0V1Y,GQY1XT001ENIVP,GQY1XT001C0Z1B,GQY1XT001BO98K,GQY1XT001BDRZ1,GQY1XT001BG9PG,GQY1XT001ER0DP,GQY1XT001BYRH4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6C10"; +secondCol = "GQY1XT001D6C10,GQY1XT001BGNY9,GQY1XT001EQA9L,GQY1XT001DGQ92,GQY1XT001DZNV0,GQY1XT001B2D66,GQY1XT001DYEM0,GQY1XT001CPX32,GQY1XT001EH251,GQY1XT001CVEL6,GQY1XT001CQV7B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU6G0"; +secondCol = "GQY1XT001CU6G0,GQY1XT001BHSEP,GQY1XT001E3SKN,GQY1XT001BHPOQ,GQY1XT001B8NAK,GQY1XT001DJF4R,GQY1XT001E197Z,GQY1XT001CHNT8,GQY1XT001A52L4,GQY1XT001BZHWW,GQY1XT001ED4Q5,GQY1XT001ETTHM,GQY1XT001DHBZV,GQY1XT001BQ4XT,GQY1XT001CKAVJ,GQY1XT001CFQDN,GQY1XT001CU74T,GQY1XT001BWAJP,GQY1XT001EN8C2,GQY1XT001EZE9L,GQY1XT001DTMGO,GQY1XT001EHV9V,GQY1XT001BJHZO,GQY1XT001C57P2,GQY1XT001ALHD1,GQY1XT001B0EEI,GQY1XT001ES0SF,GQY1XT001A7ECW,GQY1XT001DGTI1,GQY1XT001AI6BS,GQY1XT001CALAL,GQY1XT001DBDSK,GQY1XT001DXZKP,GQY1XT001A0INC,GQY1XT001BOH7I,GQY1XT001DJ7LI,GQY1XT001AHIK9,GQY1XT001A6KII"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCIKR"; +secondCol = "GQY1XT001CCIKR,GQY1XT001AR8EP,GQY1XT001A1CMF,GQY1XT001D6QAJ,GQY1XT001ECIY0,GQY1XT001BCDOK,GQY1XT001AURLG,GQY1XT001A9KRO,GQY1XT001EDNU1,GQY1XT001DD7MM,GQY1XT001BKH1W,GQY1XT001AHOB4,GQY1XT001A352Z,GQY1XT001AKDAU,GQY1XT001E08M8,GQY1XT001CLO3J,GQY1XT001DOU5W,GQY1XT001B3URR,GQY1XT001EXVUC,GQY1XT001C9O3E,GQY1XT001BC5TC,GQY1XT001C4WLQ,GQY1XT001BXKX6,GQY1XT001ALA5Y,GQY1XT001ETYL4,GQY1XT001A0D15,GQY1XT001C2C3O,GQY1XT001EQO98,GQY1XT001DM3GD,GQY1XT001CW7HX,GQY1XT001EOMBP,GQY1XT001EBPHR,GQY1XT001E10NV,GQY1XT001CQOPP,GQY1XT001CVPVP,GQY1XT001CGGLG,GQY1XT001DYME5,GQY1XT001CDUUN,GQY1XT001BFIYX,GQY1XT001BPADT,GQY1XT001B0SHD,GQY1XT001CGEZL,GQY1XT001ARDG1,GQY1XT001B0USX,GQY1XT001DADN2,GQY1XT001DEQC8,GQY1XT001CEF9X,GQY1XT001DLDAC,GQY1XT001EJKJ3,GQY1XT001EUXQR,GQY1XT001DYMOY,GQY1XT001EXE7J,GQY1XT001ARUAO,GQY1XT001DPUG4,GQY1XT001CVCXS,GQY1XT001D2A0G,GQY1XT001D96ZW,GQY1XT001DLZEV,GQY1XT001DC08R,GQY1XT001CN5NH,GQY1XT001CCIQS,GQY1XT001C9NIK,GQY1XT001B14C0,GQY1XT001DCPTK,GQY1XT001A6KWE,GQY1XT001AN1JR,GQY1XT001AHGC5,GQY1XT001DJZC2,GQY1XT001CYNIK,GQY1XT001B4XOH,GQY1XT001AXGQ0,GQY1XT001BMKUR,GQY1XT001EULSG,GQY1XT001ALY3K,GQY1XT001B1EAC,GQY1XT001EZ0U4,GQY1XT001C6ACZ,GQY1XT001DAJ7D,GQY1XT001BL0Y2,GQY1XT001C1B8V,GQY1XT001CN2M7,GQY1XT001DBDXC,GQY1XT001EWU6T,GQY1XT001BUW3W,GQY1XT001DMIET,GQY1XT001D3W2W,GQY1XT001DKBTW,GQY1XT001DRULF,GQY1XT001DY9EB,GQY1XT001CWXRI,GQY1XT001BETPG,GQY1XT001AEAPY,GQY1XT001DA0FT,GQY1XT001EQ28S,GQY1XT001EDLFP,GQY1XT001DULKW,GQY1XT001DQ4VJ,GQY1XT001DDMWY,GQY1XT001CSZKH,GQY1XT001CSMWF,GQY1XT001BV4EI,GQY1XT001B4SAE,GQY1XT001BVCW1,GQY1XT001A3DR2,GQY1XT001CXUUM,GQY1XT001CILUL,GQY1XT001DV2FE,GQY1XT001BFHWJ,GQY1XT001DUR50,GQY1XT001D7IS4,GQY1XT001CL13G,GQY1XT001BOT1Q,GQY1XT001CO1GV,GQY1XT001EBAPN,GQY1XT001BH4SX,GQY1XT001DRWIK,GQY1XT001BC9ZK,GQY1XT001DBKAC,GQY1XT001EGJIR,GQY1XT001CJON9,GQY1XT001CX369,GQY1XT001CLH6P,GQY1XT001D4BE6,GQY1XT001BHD7B,GQY1XT001A6JCG,GQY1XT001EQHCP,GQY1XT001D3DPU,GQY1XT001CFR7K,GQY1XT001BR464,GQY1XT001EW5L7,GQY1XT001EDEB7,GQY1XT001ENSE2,GQY1XT001B7K35,GQY1XT001COKP7,GQY1XT001C0UV1,GQY1XT001AQ0UL,GQY1XT001BC6RE,GQY1XT001ESNZF,GQY1XT001AI1M4,GQY1XT001ERUXY,GQY1XT001BZTY9,GQY1XT001DY4KX,GQY1XT001D3UY7,GQY1XT001DKKUP,GQY1XT001CF149,GQY1XT001BR65I,GQY1XT001CGOM1,GQY1XT001AQJ9W,GQY1XT001BQ0LT,GQY1XT001EV8DR,GQY1XT001ERK67,GQY1XT001E4KKX,GQY1XT001A24HX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5FNH"; +secondCol = "GQY1XT001C5FNH,GQY1XT001BCP28,GQY1XT001ECTWB,GQY1XT001CD614"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW5GI"; +secondCol = "GQY1XT001BW5GI,GQY1XT001AIEP0,GQY1XT001AXRB0,GQY1XT001BSQF1,GQY1XT001CB4UT,GQY1XT001CE7PV,GQY1XT001C1TU2,GQY1XT001E2BOB,GQY1XT001AGJUF,GQY1XT001C9KWR,GQY1XT001DP0LF,GQY1XT001DMFWL,GQY1XT001A2V2T,GQY1XT001EXPU0,GQY1XT001BOF5Q,GQY1XT001DX45M,GQY1XT001CD8EU,GQY1XT001A6UZD,GQY1XT001CBNM7,GQY1XT001DMJIY,GQY1XT001B31FH,GQY1XT001AJ1EU,GQY1XT001BCAP3,GQY1XT001EQXSF,GQY1XT001AGQGE,GQY1XT001E106Z,GQY1XT001DZET8,GQY1XT001A1B1S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKKRF"; +secondCol = "GQY1XT001BKKRF,GQY1XT001CIMTN,GQY1XT001EELI9,GQY1XT001BFUJZ,GQY1XT001E11BP,GQY1XT001BSISW,GQY1XT001CBVDS,GQY1XT001BOTGD,GQY1XT001E2UMZ,GQY1XT001DLLM4,GQY1XT001BKK1T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFDG3"; +secondCol = "GQY1XT001BFDG3,GQY1XT001CNXTK,GQY1XT001CMVPL,GQY1XT001DEV2F,GQY1XT001AGZVW,GQY1XT001D9HFL,GQY1XT001DLNE1,GQY1XT001AI99D,GQY1XT001BY7QE,GQY1XT001BUJNZ,GQY1XT001B9Y37,GQY1XT001B5HD4,GQY1XT001AXHDO,GQY1XT001DK4A8,GQY1XT001AXPGU,GQY1XT001BIT7R,GQY1XT001ALFJ5,GQY1XT001CJJTT,GQY1XT001DOHLQ,GQY1XT001DF0UU,GQY1XT001AO3OX,GQY1XT001AG1RR,GQY1XT001AJE8N,GQY1XT001DQM04,GQY1XT001C0TMY,GQY1XT001B2QTC,GQY1XT001EHLKN,GQY1XT001C057J,GQY1XT001CV8Z9,GQY1XT001BEMVI,GQY1XT001D5RHE,GQY1XT001BYM4K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA1UZ"; +secondCol = "GQY1XT001BA1UZ,GQY1XT001AYQH1,GQY1XT001EHP6H,GQY1XT001BV36A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7B4F"; +secondCol = "GQY1XT001B7B4F,GQY1XT001CDOES,GQY1XT001BAA9Y,GQY1XT001AIQ1A,GQY1XT001B8HDI,GQY1XT001EZG0P,GQY1XT001DKYFL,GQY1XT001BBCHR,GQY1XT001A36TZ,GQY1XT001DKWKN,GQY1XT001DEHB8,GQY1XT001DB2ZP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3HER"; +secondCol = "GQY1XT001B3HER,GQY1XT001AJEBZ,GQY1XT001C9GVY,GQY1XT001D15YI,GQY1XT001DCRIR,GQY1XT001BIXQ4,GQY1XT001C0F0Q,GQY1XT001D90OR,GQY1XT001DSHQ4,GQY1XT001CNJXS,GQY1XT001BA3VO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZUJZ"; +secondCol = "GQY1XT001AZUJZ,GQY1XT001CBFM2,GQY1XT001EHM7C,GQY1XT001EUCS5,GQY1XT001B5F96,GQY1XT001DZJ94,GQY1XT001AMNR9,GQY1XT001E4EUB,GQY1XT001B03H8,GQY1XT001BLW2Z,GQY1XT001EJXPH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVTPK"; +secondCol = "GQY1XT001AVTPK,GQY1XT001AU1F3,GQY1XT001CB2V9,GQY1XT001B54AT,GQY1XT001DHSQ9,GQY1XT001D1LMO,GQY1XT001CNMD8,GQY1XT001B5IA3,GQY1XT001C4JXO,GQY1XT001EN5ZD,GQY1XT001BB0ZI,GQY1XT001EYKPH,GQY1XT001A5KJY,GQY1XT001CV6DJ,GQY1XT001C86GQ,GQY1XT001D0F2C,GQY1XT001C8XEY,GQY1XT001C00GF,GQY1XT001A2CBM,GQY1XT001AH37K,GQY1XT001EXDKQ,GQY1XT001CTCOQ,GQY1XT001CDMTZ,GQY1XT001BDLZW,GQY1XT001CCY8G,GQY1XT001ANMFT,GQY1XT001EMOBP,GQY1XT001B0IQZ,GQY1XT001CVSCG,GQY1XT001A98WB,GQY1XT001DKVKU,GQY1XT001BMQGZ,GQY1XT001ASQ8N,GQY1XT001DOVYP,GQY1XT001CAN7R,GQY1XT001BY7IB,GQY1XT001BP4SJ,GQY1XT001BYR6V,GQY1XT001AV4N0,GQY1XT001BMOHT,GQY1XT001BFYR6,GQY1XT001BJGGH,GQY1XT001CMEKO,GQY1XT001C8F4W,GQY1XT001BZR6K,GQY1XT001BSV1V,GQY1XT001A8LQ8,GQY1XT001AQWMQ,GQY1XT001C2UTV,GQY1XT001DDKX3,GQY1XT001A4V25,GQY1XT001EOXZP,GQY1XT001BEEZG,GQY1XT001C3GF7,GQY1XT001DE8JL,GQY1XT001A09HX,GQY1XT001EA3VI,GQY1XT001EFKOZ,GQY1XT001CMEQF,GQY1XT001A78H0,GQY1XT001B5IXV,GQY1XT001AIF2K,GQY1XT001A3ZZM,GQY1XT001A456G,GQY1XT001A9I47,GQY1XT001AQUIN,GQY1XT001EHTOS,GQY1XT001CU2CT,GQY1XT001BKQXX,GQY1XT001C2VXA,GQY1XT001BV535,GQY1XT001AO9C8,GQY1XT001CR1H7,GQY1XT001CK6CB,GQY1XT001AOPEG,GQY1XT001A8P16,GQY1XT001DIEVB,GQY1XT001DA55X,GQY1XT001D6NSW,GQY1XT001CV9BL,GQY1XT001CL1JT,GQY1XT001CC6A8,GQY1XT001C5993,GQY1XT001BHU5V,GQY1XT001ASXL8,GQY1XT001AQBCT,GQY1XT001AEZM8,GQY1XT001A6RFV,GQY1XT001EMH4Q,GQY1XT001DHXAV,GQY1XT001C047T,GQY1XT001CRG80,GQY1XT001BA2BC,GQY1XT001BXN8X,GQY1XT001A1HCO,GQY1XT001DVMAK,GQY1XT001BFTSH,GQY1XT001BDP5J,GQY1XT001AFUHS,GQY1XT001CBKTM,GQY1XT001BZ5E0,GQY1XT001C17ZQ,GQY1XT001CWI09,GQY1XT001BDOO8,GQY1XT001BN2FX,GQY1XT001AUU1Q,GQY1XT001EDBEI,GQY1XT001BANAZ,GQY1XT001EF335,GQY1XT001CYK0F,GQY1XT001CED8B,GQY1XT001EWPE5,GQY1XT001BS72K,GQY1XT001APSRJ,GQY1XT001D7QHU,GQY1XT001BYM83,GQY1XT001BOSK3,GQY1XT001AJFWK,GQY1XT001AJDCN,GQY1XT001DK9NK,GQY1XT001BELRO,GQY1XT001DXET3,GQY1XT001C9OEE,GQY1XT001DRW2X,GQY1XT001EGX94,GQY1XT001DO225,GQY1XT001AUHJU,GQY1XT001DX512,GQY1XT001DBBXK,GQY1XT001AG4YT,GQY1XT001BZJLB,GQY1XT001E3LJ0,GQY1XT001DZKPJ,GQY1XT001A62HQ,GQY1XT001CR5GF,GQY1XT001EN6J9,GQY1XT001AP4U5,GQY1XT001EY56F,GQY1XT001CJZV1,GQY1XT001DV7VO,GQY1XT001CIZMR,GQY1XT001DTOUI,GQY1XT001DTNR0,GQY1XT001CTPWB,GQY1XT001B00S0,GQY1XT001EFHJZ,GQY1XT001DAHHO,GQY1XT001EFTHX,GQY1XT001ELGVF,GQY1XT001EQBJC,GQY1XT001DDM10,GQY1XT001B8HZK,GQY1XT001B7SC2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGP1J"; +secondCol = "GQY1XT001AGP1J,GQY1XT001C5AHP,GQY1XT001C33GQ,GQY1XT001CXLTN,GQY1XT001C8LRW,GQY1XT001A8IZ0,GQY1XT001EPTS0,GQY1XT001CD02J,GQY1XT001C89QH,GQY1XT001AQH36,GQY1XT001DMX1K,GQY1XT001CWINX,GQY1XT001DXVT6,GQY1XT001A2J0T,GQY1XT001DRPXL,GQY1XT001BKSZ9,GQY1XT001ERIY5,GQY1XT001B3R4P,GQY1XT001DLOO2,GQY1XT001BPYDW,GQY1XT001D4OPB,GQY1XT001ET9WL,GQY1XT001B6DH2,GQY1XT001BK9SE,GQY1XT001A5TA0,GQY1XT001CS2WK,GQY1XT001B30K3,GQY1XT001EE5OY,GQY1XT001A60K2,GQY1XT001DTJO4,GQY1XT001ED9R2,GQY1XT001ECH4N,GQY1XT001CGRBZ,GQY1XT001BKMIS,GQY1XT001BCBFF,GQY1XT001E3FGX,GQY1XT001APB1A,GQY1XT001D4RUD,GQY1XT001CK1WK,GQY1XT001AQQWW,GQY1XT001DRV40,GQY1XT001C9DTM,GQY1XT001DN2HG,GQY1XT001D69R7,GQY1XT001ANMRX,GQY1XT001AJW48,GQY1XT001CS491,GQY1XT001DYLJ6,GQY1XT001D073V,GQY1XT001AXYPF,GQY1XT001BW1W2,GQY1XT001ELS9X,GQY1XT001D931D,GQY1XT001EATML,GQY1XT001D6ZMU,GQY1XT001EHFZ2,GQY1XT001CVW5K,GQY1XT001C8JIJ,GQY1XT001CM46Y,GQY1XT001BSRSE,GQY1XT001DVIWM,GQY1XT001ETNGE,GQY1XT001A679Z,GQY1XT001A2FYL,GQY1XT001BXFJR,GQY1XT001CUO5F,GQY1XT001B3BQ2,GQY1XT001D34VB,GQY1XT001D7UOR,GQY1XT001C6FYR,GQY1XT001CMSGN,GQY1XT001DIDTZ,GQY1XT001DLUQH,GQY1XT001CU3A6,GQY1XT001CN0RM,GQY1XT001CERQM,GQY1XT001AHTSC,GQY1XT001AGPXM,GQY1XT001B0JC3,GQY1XT001CWPRT,GQY1XT001CUKTL,GQY1XT001BA79C,GQY1XT001EM6MS,GQY1XT001DXO8P,GQY1XT001CRZM5,GQY1XT001D5UJW,GQY1XT001AM1IE,GQY1XT001D3D2Q,GQY1XT001CFB90,GQY1XT001CTAL5,GQY1XT001ANPLX,GQY1XT001CTKEQ,GQY1XT001BJDH9,GQY1XT001B7RSW,GQY1XT001AM7JP,GQY1XT001BGHKS,GQY1XT001AYSYJ,GQY1XT001BB9YK,GQY1XT001BB2MF,GQY1XT001BHZ3P,GQY1XT001CG2LQ,GQY1XT001BKY3I,GQY1XT001CITKF,GQY1XT001DFYRU,GQY1XT001ESKYO,GQY1XT001EFK2U,GQY1XT001A2U3S,GQY1XT001B568W,GQY1XT001ESXMI,GQY1XT001CKBH1,GQY1XT001AQ74E,GQY1XT001B0JVU,GQY1XT001C6WDL,GQY1XT001CG21L,GQY1XT001B652J,GQY1XT001C8GRS,GQY1XT001BABER,GQY1XT001A7RXR,GQY1XT001A2I05,GQY1XT001C7X98,GQY1XT001B1SPS,GQY1XT001C6KIT,GQY1XT001CN1XP,GQY1XT001C02UI,GQY1XT001BVL5Y,GQY1XT001BDPWD,GQY1XT001ANDH7,GQY1XT001BZL9W,GQY1XT001CNF6Q,GQY1XT001BG6CS,GQY1XT001DSJQV,GQY1XT001CHMAW,GQY1XT001C3Z7O,GQY1XT001EAVW7,GQY1XT001EFM8J,GQY1XT001EQ28B,GQY1XT001CGP0K,GQY1XT001A9VT9,GQY1XT001B6N69,GQY1XT001CI9VA,GQY1XT001AQTNU,GQY1XT001AGP23,GQY1XT001BDDIE,GQY1XT001DUIU7,GQY1XT001CD4OV,GQY1XT001CUW1Q,GQY1XT001B3C5I,GQY1XT001DCTA2,GQY1XT001BXUUB,GQY1XT001B5N29,GQY1XT001BGC9H,GQY1XT001CKNAW,GQY1XT001ARYKB,GQY1XT001CMOGR,GQY1XT001BP99T,GQY1XT001BTRWZ,GQY1XT001AX2L6,GQY1XT001ERI4Q,GQY1XT001B63V8,GQY1XT001CZNIJ,GQY1XT001B9V3X,GQY1XT001D7759,GQY1XT001BCMQ1,GQY1XT001DYK3G,GQY1XT001DA5ZV,GQY1XT001CSQLJ,GQY1XT001BXLQX,GQY1XT001AJ69F,GQY1XT001B24F1,GQY1XT001BDRVG,GQY1XT001ENXDA,GQY1XT001A85TJ,GQY1XT001DJL40,GQY1XT001DK0V0,GQY1XT001EYTRC,GQY1XT001BHNW7,GQY1XT001BOAJJ,GQY1XT001BVKPA,GQY1XT001BFK82,GQY1XT001AI7T2,GQY1XT001AWDXO,GQY1XT001EZ6UP,GQY1XT001CDABL,GQY1XT001E5YUK,GQY1XT001EG5HV,GQY1XT001EDGIR,GQY1XT001A3R83,GQY1XT001BK1CU,GQY1XT001AEC2O,GQY1XT001BZNJ8,GQY1XT001B19TA,GQY1XT001DTBMM,GQY1XT001DLW5R,GQY1XT001AWCNV,GQY1XT001DQ43Z,GQY1XT001CAR1Z,GQY1XT001EPCCN,GQY1XT001CJKHJ,GQY1XT001D39QG,GQY1XT001CNXB8,GQY1XT001B6I1M,GQY1XT001CIDL8,GQY1XT001CAHJ7,GQY1XT001B036T,GQY1XT001A4EWE,GQY1XT001A1WCT,GQY1XT001AOSPT,GQY1XT001EGMRR,GQY1XT001BZY5E,GQY1XT001C9141,GQY1XT001CPVWS,GQY1XT001CJY02,GQY1XT001BK8AF,GQY1XT001CESQL,GQY1XT001B7U4Q,GQY1XT001DUW2H,GQY1XT001DDL30,GQY1XT001C6QF7,GQY1XT001D8VQH,GQY1XT001CCO44,GQY1XT001ECYXI,GQY1XT001E18MC,GQY1XT001C1I90,GQY1XT001DPWG3,GQY1XT001ARY5L,GQY1XT001ETN58,GQY1XT001DXHXI,GQY1XT001AYTZ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AESMQ"; +secondCol = "GQY1XT001AESMQ,GQY1XT001A3297,GQY1XT001A7V6L,GQY1XT001EUTKD,GQY1XT001D6EQK,GQY1XT001CK2KC,GQY1XT001DWH11,GQY1XT001CXL3J,GQY1XT001E3FPA,GQY1XT001A0J0S,GQY1XT001DFMEU,GQY1XT001CGRNC,GQY1XT001BUAAO,GQY1XT001ARF5M,GQY1XT001BX2ZZ,GQY1XT001BO4AU,GQY1XT001DH9CP,GQY1XT001CCQIO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXMDA"; +secondCol = "GQY1XT001EXMDA,GQY1XT001EWTZ1,GQY1XT001BV4S1,GQY1XT001AZ6SU,GQY1XT001DR2GT,GQY1XT001EJ53O,GQY1XT001COOQ8,GQY1XT001CF6FF,GQY1XT001AW8D2,GQY1XT001BL8RG,GQY1XT001B1QUS,GQY1XT001AXY47,GQY1XT001CLN92,GQY1XT001B7E1Z,GQY1XT001B7TFR,GQY1XT001CV1C3,GQY1XT001BTO3A,GQY1XT001DPL7R,GQY1XT001CRAWC,GQY1XT001CF380,GQY1XT001CDMBI,GQY1XT001CAQXR,GQY1XT001CAA0B,GQY1XT001EG5DN,GQY1XT001B1954,GQY1XT001E2V9W,GQY1XT001BL9O2,GQY1XT001EWKXW,GQY1XT001E3JM7,GQY1XT001DRB7W,GQY1XT001D4LKT,GQY1XT001ARONS,GQY1XT001CNRDR,GQY1XT001EVYTT,GQY1XT001BHT9H,GQY1XT001AI6OJ,GQY1XT001A6HHS,GQY1XT001A29O7,GQY1XT001CPRST,GQY1XT001C7V1T,GQY1XT001B3VQO,GQY1XT001DA6FX,GQY1XT001BKKHC,GQY1XT001BZQ8I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHLX1"; +secondCol = "GQY1XT001EHLX1,GQY1XT001EFLNV,GQY1XT001EAHHP,GQY1XT001CTMI3,GQY1XT001CRAYM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEPSH"; +secondCol = "GQY1XT001EEPSH,GQY1XT001BHDK0,GQY1XT001A1VJW,GQY1XT001AMGSS,GQY1XT001BKUHN,GQY1XT001EBSJ1,GQY1XT001AH2RA,GQY1XT001EZ4C8,GQY1XT001CXVPI,GQY1XT001AR5XF,GQY1XT001A5KA9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0WEO"; +secondCol = "GQY1XT001E0WEO,GQY1XT001CIF9O,GQY1XT001BYW2M,GQY1XT001CWT1H,GQY1XT001AJFZZ,GQY1XT001B2JHH,GQY1XT001DOQV3,GQY1XT001DG06A,GQY1XT001BN9DF,GQY1XT001CBPUA,GQY1XT001BN85D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DV57S"; +secondCol = "GQY1XT001DV57S,GQY1XT001EPBIO,GQY1XT001BAG7V,GQY1XT001ALW3L,GQY1XT001B306I,GQY1XT001CBVTU,GQY1XT001BXXZD,GQY1XT001AQEI4,GQY1XT001APNRN,GQY1XT001DPQ4V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC1ON"; +secondCol = "GQY1XT001DC1ON,GQY1XT001AY1MW,GQY1XT001DDMO5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0EZV"; +secondCol = "GQY1XT001D0EZV,GQY1XT001AI27Q,GQY1XT001D7EXI,GQY1XT001AEZVM,GQY1XT001A4T9A,GQY1XT001B6E0A,GQY1XT001C9S79,GQY1XT001ANG9M,GQY1XT001DYKW2,GQY1XT001CCVCF,GQY1XT001EWP68,GQY1XT001CL7EM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D07O6"; +secondCol = "GQY1XT001D07O6,GQY1XT001ERVJF,GQY1XT001AGI46,GQY1XT001A4P6D,GQY1XT001AZ13J,GQY1XT001B796Y,GQY1XT001BCSTU,GQY1XT001DFYGE,GQY1XT001AFU51,GQY1XT001EOJUM,GQY1XT001DHLKX,GQY1XT001CF9GQ,GQY1XT001A27G6,GQY1XT001B49SO,GQY1XT001CE5HV,GQY1XT001EUQUB,GQY1XT001EKGPZ,GQY1XT001CZBJN,GQY1XT001D2FOG,GQY1XT001ELGY8,GQY1XT001BWK3M,GQY1XT001DIGD9,GQY1XT001DS8AB,GQY1XT001D98QY,GQY1XT001DEIA8,GQY1XT001CZFMQ,GQY1XT001DCNBD,GQY1XT001E0DY5,GQY1XT001ARGRZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVG08"; +secondCol = "GQY1XT001CVG08,GQY1XT001CVV79,GQY1XT001DKG1U,GQY1XT001A9D29"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTARO"; +secondCol = "GQY1XT001CTARO,GQY1XT001ES4R9,GQY1XT001AUTMR,GQY1XT001EV4YP,GQY1XT001DD0I2,GQY1XT001E0PFK,GQY1XT001CM0W6,GQY1XT001DW239,GQY1XT001CJMGC,GQY1XT001BERG3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPLJN"; +secondCol = "GQY1XT001CPLJN,GQY1XT001DYKJA,GQY1XT001EEGRX,GQY1XT001A0ZYK,GQY1XT001EUYCK,GQY1XT001EMIFB,GQY1XT001ERDCN,GQY1XT001AHXSP,GQY1XT001CRSU5,GQY1XT001B8B9X,GQY1XT001ETCE3,GQY1XT001B1WEX,GQY1XT001B7PVZ,GQY1XT001EJOYV,GQY1XT001CJGB5,GQY1XT001DSKY2,GQY1XT001D3T2X,GQY1XT001A45GN,GQY1XT001B3OJ1,GQY1XT001EGUUO,GQY1XT001B3VFZ,GQY1XT001DKBB9,GQY1XT001APDBS,GQY1XT001CH9EN,GQY1XT001CX3LO,GQY1XT001BDTDV,GQY1XT001EYWRX,GQY1XT001EB7WI,GQY1XT001BLEE5,GQY1XT001A5UE3,GQY1XT001B4IIZ,GQY1XT001BXF5Y,GQY1XT001EIQWD,GQY1XT001D3XCE,GQY1XT001CY1SI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CB5IC"; +secondCol = "GQY1XT001CB5IC,GQY1XT001EQKME,GQY1XT001C87V0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C281B"; +secondCol = "GQY1XT001C281B,GQY1XT001CVN6S,GQY1XT001CD9RH,GQY1XT001A1796,GQY1XT001B09DS,GQY1XT001DHZ0M,GQY1XT001B1EPS,GQY1XT001AV24I,GQY1XT001DOLRX,GQY1XT001DD2GT,GQY1XT001CCYQU,GQY1XT001CAQBA,GQY1XT001A4YLL,GQY1XT001C3NJE,GQY1XT001AEYQR,GQY1XT001AEHBJ,GQY1XT001COOCW,GQY1XT001CUCE6,GQY1XT001AJX44,GQY1XT001C4G5N,GQY1XT001DJA27,GQY1XT001E4KTU,GQY1XT001DUND5,GQY1XT001C4IMW,GQY1XT001APEEU,GQY1XT001EUOAE,GQY1XT001EEFLD,GQY1XT001BTS3B,GQY1XT001CY2CI,GQY1XT001BXTIU,GQY1XT001DP9XM,GQY1XT001DGZYS,GQY1XT001B2ZAK,GQY1XT001BZJQP,GQY1XT001EFECV,GQY1XT001BWE2T,GQY1XT001C1M5R,GQY1XT001CC701,GQY1XT001C24AE,GQY1XT001BVU01,GQY1XT001B4ZU4,GQY1XT001A5W13,GQY1XT001ENAV4,GQY1XT001BM1QB,GQY1XT001CNB1X,GQY1XT001CQUAK,GQY1XT001B3DU7,GQY1XT001D0VHO,GQY1XT001ALV5X,GQY1XT001EPGMR,GQY1XT001EB8GA,GQY1XT001BOB3R,GQY1XT001DH1BI,GQY1XT001CJRZF,GQY1XT001AH7RO,GQY1XT001AKW97,GQY1XT001BF20D,GQY1XT001DYQLG,GQY1XT001BVNGD,GQY1XT001ERCJP,GQY1XT001B63V6,GQY1XT001ARMBP,GQY1XT001DXRLT,GQY1XT001CX20Y,GQY1XT001C4R93,GQY1XT001CZHVO,GQY1XT001A8UG2,GQY1XT001C1X69,GQY1XT001AX1N9,GQY1XT001B8TKG,GQY1XT001BCPOS,GQY1XT001CB6MK,GQY1XT001D8Z57,GQY1XT001BK3NA,GQY1XT001BZSB4,GQY1XT001DERFQ,GQY1XT001DUSU0,GQY1XT001CQ1AH,GQY1XT001EO248,GQY1XT001B4F3R,GQY1XT001A09II,GQY1XT001DFR27,GQY1XT001C94L3,GQY1XT001DMOKB,GQY1XT001BYYCV,GQY1XT001EJZAJ,GQY1XT001C5PO5,GQY1XT001ASLK1,GQY1XT001A9E3L,GQY1XT001EFLZ8,GQY1XT001EOY2Y,GQY1XT001ES3L0,GQY1XT001DUL9B,GQY1XT001D4WML,GQY1XT001B9OT2,GQY1XT001AZ4WD,GQY1XT001AJJBX,GQY1XT001C6YM8,GQY1XT001A2BNV,GQY1XT001BRETP,GQY1XT001A0UF5,GQY1XT001EVXKW,GQY1XT001APN7T,GQY1XT001A0Z4Q,GQY1XT001EZCHA,GQY1XT001D1C17,GQY1XT001CHH20,GQY1XT001CGE71"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWUNQ"; +secondCol = "GQY1XT001BWUNQ,GQY1XT001BJRX6,GQY1XT001ERV6E,GQY1XT001BE66H,GQY1XT001AZ06H,GQY1XT001D06CS,GQY1XT001B6BYZ,GQY1XT001C0IHQ,GQY1XT001DYKSH,GQY1XT001B78AR,GQY1XT001D488K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUCXD"; +secondCol = "GQY1XT001BUCXD,GQY1XT001DV1K1,GQY1XT001DLIEB,GQY1XT001DINES,GQY1XT001APEXT,GQY1XT001ANK46,GQY1XT001A8S8G,GQY1XT001BGEFW,GQY1XT001ETUIY,GQY1XT001DF886,GQY1XT001AKHXP,GQY1XT001DKVIM,GQY1XT001CDG43,GQY1XT001ERTT0,GQY1XT001D1159,GQY1XT001CHCOS,GQY1XT001DDGET,GQY1XT001E1LSA,GQY1XT001EVD4P,GQY1XT001AUF39,GQY1XT001CQGWS,GQY1XT001B8W2C,GQY1XT001CB71I,GQY1XT001BGAVT,GQY1XT001C9Z06,GQY1XT001CX4HU,GQY1XT001CLP6N,GQY1XT001D18UX,GQY1XT001BOYYW,GQY1XT001EKX9Z,GQY1XT001CHS8L,GQY1XT001C02HS,GQY1XT001COE24,GQY1XT001CHEUV,GQY1XT001C3WNA,GQY1XT001D6FTU,GQY1XT001DIYNP,GQY1XT001EHJNW,GQY1XT001D0JQE,GQY1XT001CYIGT,GQY1XT001EKJUU,GQY1XT001ES6DF,GQY1XT001EKODX,GQY1XT001B5WID,GQY1XT001AVGKM,GQY1XT001EG6YW,GQY1XT001DHPGY,GQY1XT001A3X56,GQY1XT001BIHV7,GQY1XT001ANMU5,GQY1XT001DBFSC,GQY1XT001EICQA,GQY1XT001EA0HO,GQY1XT001BQF6Y,GQY1XT001BM5HA,GQY1XT001EKIOU,GQY1XT001EZ6QF,GQY1XT001BWD86,GQY1XT001EOYR9,GQY1XT001BD9NX,GQY1XT001BF0KH,GQY1XT001DQQVA,GQY1XT001CFXAW,GQY1XT001DOCHD,GQY1XT001BX4E4,GQY1XT001BFJZZ,GQY1XT001D24CF,GQY1XT001ETIKR,GQY1XT001DFCNS,GQY1XT001B34BS,GQY1XT001B7F5M,GQY1XT001DWPM4,GQY1XT001CFJDN,GQY1XT001EP0G9,GQY1XT001EEUNW,GQY1XT001C7KY6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQUGT"; +secondCol = "GQY1XT001BQUGT,GQY1XT001EV3EN,GQY1XT001DYVYI,GQY1XT001EFADP,GQY1XT001D2W5A,GQY1XT001AOB1S,GQY1XT001BPNXD,GQY1XT001BHNXF,GQY1XT001BMAMU,GQY1XT001AP6YC,GQY1XT001CC8YT,GQY1XT001CF07L,GQY1XT001DSC0L,GQY1XT001A7O4K,GQY1XT001DAH2X,GQY1XT001B96IM,GQY1XT001AYXB8,GQY1XT001D09W6,GQY1XT001ANAHK,GQY1XT001BSFFZ,GQY1XT001AV9GP,GQY1XT001AIA0H,GQY1XT001A7UB5,GQY1XT001C8TRM,GQY1XT001B330E,GQY1XT001B4KXT,GQY1XT001B72ZM,GQY1XT001AOR5X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNNDP"; +secondCol = "GQY1XT001BNNDP,GQY1XT001CR4O7,GQY1XT001DINHA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BN9CV"; +secondCol = "GQY1XT001BN9CV,GQY1XT001B7KQV,GQY1XT001DZAOJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BL21S"; +secondCol = "GQY1XT001BL21S,GQY1XT001DRUKB,GQY1XT001C6769,GQY1XT001DC16C,GQY1XT001BVA04,GQY1XT001BOF6Z,GQY1XT001DZU9F,GQY1XT001ASKHX,GQY1XT001C6QKS,GQY1XT001DD3BY,GQY1XT001BNZU7,GQY1XT001BTJJL,GQY1XT001C27ZC,GQY1XT001D46BT,GQY1XT001ESD4R,GQY1XT001BFYJC,GQY1XT001AWPAS,GQY1XT001A09TD,GQY1XT001DYVV0,GQY1XT001B6JKY,GQY1XT001CUELF,GQY1XT001DU4NX,GQY1XT001DUIAX,GQY1XT001BZVO3,GQY1XT001C7O4K,GQY1XT001BII3C,GQY1XT001CDFXS,GQY1XT001A7TXZ,GQY1XT001AK8PH,GQY1XT001EIOR0,GQY1XT001AZZXM,GQY1XT001A5KX9,GQY1XT001D7TBC,GQY1XT001BRM5V,GQY1XT001B5W6D,GQY1XT001AIQ4P,GQY1XT001BH1MT,GQY1XT001EITPT,GQY1XT001EC4ZL,GQY1XT001EHUJC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD93X"; +secondCol = "GQY1XT001BD93X,GQY1XT001DWGIM,GQY1XT001EBT5L,GQY1XT001AV3Q9,GQY1XT001CEUFF,GQY1XT001CGM6R,GQY1XT001DPOQD,GQY1XT001DUPUD,GQY1XT001C4YZ0,GQY1XT001EDXGM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7SJ3"; +secondCol = "GQY1XT001B7SJ3,GQY1XT001C42MX,GQY1XT001E4AWQ,GQY1XT001A7D5P,GQY1XT001A3UG1,GQY1XT001B9XI3,GQY1XT001D2REO,GQY1XT001CW975,GQY1XT001C8NRP,GQY1XT001AXNQ1,GQY1XT001EJ048,GQY1XT001E3UW4,GQY1XT001CRR9V,GQY1XT001EAOZG,GQY1XT001CW5WE,GQY1XT001BH864,GQY1XT001B26Q2,GQY1XT001BSSL1,GQY1XT001CQ96E,GQY1XT001CVHOH,GQY1XT001DQ2XK,GQY1XT001AJVKL,GQY1XT001C19F2,GQY1XT001DD8NU,GQY1XT001DOUM3,GQY1XT001CK74R,GQY1XT001BB6TU,GQY1XT001BI2TY,GQY1XT001AITQ3,GQY1XT001DOSPP,GQY1XT001C5URF,GQY1XT001EJYU0,GQY1XT001CDYXK,GQY1XT001EHA2Y,GQY1XT001AROHP,GQY1XT001CLS0I,GQY1XT001AF7R7,GQY1XT001D8CYQ,GQY1XT001B47CT,GQY1XT001AEZ1Y,GQY1XT001AJ86V,GQY1XT001A8D9C,GQY1XT001CS95L,GQY1XT001DR3X8,GQY1XT001B4MO4,GQY1XT001D8KDT,GQY1XT001B5SBT,GQY1XT001CHTL1,GQY1XT001EMAK3,GQY1XT001D87S4,GQY1XT001DG8G8,GQY1XT001CJK8S,GQY1XT001DBPB7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B79N5"; +secondCol = "GQY1XT001B79N5,GQY1XT001AGQVF,GQY1XT001CUQG8,GQY1XT001C9GL8,GQY1XT001EHVMU,GQY1XT001C4SKQ,GQY1XT001B9V31,GQY1XT001BTIOE,GQY1XT001COJVF,GQY1XT001CL95O,GQY1XT001BT80M,GQY1XT001C7ZBD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXXKK"; +secondCol = "GQY1XT001AXXKK,GQY1XT001ETC27,GQY1XT001ESJZC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APMMG"; +secondCol = "GQY1XT001APMMG,GQY1XT001DSHRB,GQY1XT001B4NFX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO6DL"; +secondCol = "GQY1XT001AO6DL,GQY1XT001DAAD5,GQY1XT001EHK0H,GQY1XT001CMFQ6,GQY1XT001CADIO,GQY1XT001ENDTA,GQY1XT001AXOBA,GQY1XT001DT8NI,GQY1XT001AKLVM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AI1JK"; +secondCol = "GQY1XT001AI1JK,GQY1XT001CX9MX,GQY1XT001D9QOI,GQY1XT001DVF0T,GQY1XT001BX191,GQY1XT001DMYJR,GQY1XT001EIN7H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AE5A7"; +secondCol = "GQY1XT001AE5A7,GQY1XT001C5JER,GQY1XT001EFH84,GQY1XT001BJAGN,GQY1XT001EM22J,GQY1XT001DPO04,GQY1XT001BE5OE,GQY1XT001D8O6W,GQY1XT001AZQQ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A77FU"; +secondCol = "GQY1XT001A77FU,GQY1XT001CS1ZU,GQY1XT001COLHQ,GQY1XT001B9Y5D,GQY1XT001BEXZ9,GQY1XT001CCFDT,GQY1XT001EB2WX,GQY1XT001AF4IZ,GQY1XT001C6DGE,GQY1XT001DQJWS,GQY1XT001C2IN9,GQY1XT001BBTYN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZU1F"; +secondCol = "GQY1XT001EZU1F,GQY1XT001B2683,GQY1XT001BQVDD,GQY1XT001EZTR6,GQY1XT001EO8KP,GQY1XT001AL5S4,GQY1XT001BS1FB,GQY1XT001DZ3PF,GQY1XT001AOPAR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EY0VF"; +secondCol = "GQY1XT001EY0VF,GQY1XT001ETMXY,GQY1XT001C2WMY,GQY1XT001D8D21,GQY1XT001C1E9A,GQY1XT001BZD9Q,GQY1XT001CELKY,GQY1XT001ED068,GQY1XT001AI9IK,GQY1XT001CJ8TL,GQY1XT001CY88X,GQY1XT001AEMQ0,GQY1XT001EKP1W,GQY1XT001CFYAQ,GQY1XT001BX168,GQY1XT001D7U8K,GQY1XT001EK9I5,GQY1XT001D8457,GQY1XT001CC2AS,GQY1XT001DUFBF,GQY1XT001DBQ7E,GQY1XT001DK7IO,GQY1XT001EO9PO,GQY1XT001CISKZ,GQY1XT001ECPG8,GQY1XT001BZJOL,GQY1XT001CJAD2,GQY1XT001EP0DF,GQY1XT001DSCNJ,GQY1XT001ERSJR,GQY1XT001AK9PN,GQY1XT001D8ATE,GQY1XT001DTUKX,GQY1XT001A8V5M,GQY1XT001C30X6,GQY1XT001BM31A,GQY1XT001AYPZA,GQY1XT001BL2XW,GQY1XT001BSS4W,GQY1XT001B9SH8,GQY1XT001A1F4B,GQY1XT001BWAB8,GQY1XT001BGUKA,GQY1XT001E1SP0,GQY1XT001C6RNJ,GQY1XT001C58WH,GQY1XT001EDNQ4,GQY1XT001EI9B2,GQY1XT001DF1AQ,GQY1XT001BZGCY,GQY1XT001A9K22,GQY1XT001BUK47,GQY1XT001BT7WL,GQY1XT001A75XZ,GQY1XT001BGE0K,GQY1XT001AOI1B,GQY1XT001A88B0,GQY1XT001AILME,GQY1XT001EPOPW,GQY1XT001DAKQF,GQY1XT001D2L32,GQY1XT001DFQLK,GQY1XT001BOJ11,GQY1XT001DHBDW,GQY1XT001AZTE9,GQY1XT001DAZXD,GQY1XT001DEWT4,GQY1XT001ETFP6,GQY1XT001DYWVQ,GQY1XT001DFC3F,GQY1XT001DN18M,GQY1XT001BL4C2,GQY1XT001DSYC2,GQY1XT001ES6BB,GQY1XT001DNB83,GQY1XT001CCDWA,GQY1XT001C11W4,GQY1XT001B1508,GQY1XT001EP6SI,GQY1XT001BDK6H,GQY1XT001DOGIH,GQY1XT001DNL1C,GQY1XT001D2SD4,GQY1XT001A2BDB,GQY1XT001AWIVJ,GQY1XT001D34HE,GQY1XT001CK04A,GQY1XT001E11W5,GQY1XT001EI52E,GQY1XT001ECEP9,GQY1XT001BETRU,GQY1XT001B1RF1,GQY1XT001A2I8C,GQY1XT001CLWRW,GQY1XT001BKD4T,GQY1XT001B2N91,GQY1XT001BK2EE,GQY1XT001C84RC,GQY1XT001CF42P,GQY1XT001C0V6Q,GQY1XT001CXGPA,GQY1XT001ARI2Z,GQY1XT001BI84N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWITF"; +secondCol = "GQY1XT001EWITF,GQY1XT001AVTP2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVEB5"; +secondCol = "GQY1XT001EVEB5,GQY1XT001AIR9D,GQY1XT001DHYA2,GQY1XT001CFC04,GQY1XT001EJM1X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERVUL"; +secondCol = "GQY1XT001ERVUL,GQY1XT001CEXCR,GQY1XT001EHU6H,GQY1XT001ET3F4,GQY1XT001ARS88,GQY1XT001ET8CI,GQY1XT001DK3HA,GQY1XT001C1EZQ,GQY1XT001ERS7G,GQY1XT001D9S6Y,GQY1XT001B9B0M,GQY1XT001B3Q3L,GQY1XT001E15M9,GQY1XT001EHI13,GQY1XT001DD0NK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPR0H"; +secondCol = "GQY1XT001EPR0H,GQY1XT001C5OX6,GQY1XT001CUZIF,GQY1XT001EOLDR,GQY1XT001DDANQ,GQY1XT001CTK0Q,GQY1XT001EFXJC,GQY1XT001EKJ29"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPKYE"; +secondCol = "GQY1XT001EPKYE,GQY1XT001BIP12,GQY1XT001DESW7,GQY1XT001BRD8Q,GQY1XT001C3335,GQY1XT001BSWZL,GQY1XT001CXL01,GQY1XT001DJQOV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM0TN"; +secondCol = "GQY1XT001EM0TN,GQY1XT001CX3NK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHL10"; +secondCol = "GQY1XT001EHL10,GQY1XT001CZRMO,GQY1XT001BLV2L,GQY1XT001EXB5C,GQY1XT001EU965,GQY1XT001D82MV,GQY1XT001CZWED,GQY1XT001EL3BR,GQY1XT001D2S8X,GQY1XT001C017W,GQY1XT001EPO6T,GQY1XT001E49JO,GQY1XT001DR9XM,GQY1XT001A1WM9,GQY1XT001CT1M3,GQY1XT001D57PX,GQY1XT001B7MWH,GQY1XT001APTWK,GQY1XT001CG9Q4,GQY1XT001C9QMX,GQY1XT001ES9ST,GQY1XT001DNN0X,GQY1XT001CNFG7,GQY1XT001C8SVR,GQY1XT001BU305,GQY1XT001C3NJS,GQY1XT001D9RZ3,GQY1XT001A0SAT,GQY1XT001BU1SY,GQY1XT001BCI0Y,GQY1XT001AIU6H,GQY1XT001BLIUT,GQY1XT001AU1AS,GQY1XT001BUD2Q,GQY1XT001DRYHN,GQY1XT001CJ8HI,GQY1XT001BDK1V,GQY1XT001AQGT4,GQY1XT001APXJL,GQY1XT001AJBDS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH8KN"; +secondCol = "GQY1XT001EH8KN,GQY1XT001AX0JV,GQY1XT001B61BL,GQY1XT001ECBJS,GQY1XT001DQ3B1,GQY1XT001CSFUI,GQY1XT001CDY4A,GQY1XT001A1LB9,GQY1XT001AMF86,GQY1XT001DXO7A,GQY1XT001EKIV9,GQY1XT001BQUA4,GQY1XT001ES93K,GQY1XT001D8T1E,GQY1XT001BA8NP,GQY1XT001ARAF3,GQY1XT001EGJJN,GQY1XT001BDAC4,GQY1XT001BXXA7,GQY1XT001DI0B0,GQY1XT001EOMC5,GQY1XT001BQZZ8,GQY1XT001C337D,GQY1XT001AOPAP,GQY1XT001BX9IT,GQY1XT001CNBVG,GQY1XT001BSOMD,GQY1XT001CVENU,GQY1XT001ENW81,GQY1XT001B2GP1,GQY1XT001DIDS3,GQY1XT001D4QBC,GQY1XT001CMZRY,GQY1XT001A3HZK,GQY1XT001DIAJ6,GQY1XT001DKJNE,GQY1XT001B3HI8,GQY1XT001B87IX,GQY1XT001DA90S,GQY1XT001BSUEM,GQY1XT001BHFCP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFRAG"; +secondCol = "GQY1XT001EFRAG,GQY1XT001AKHSB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDZY7"; +secondCol = "GQY1XT001EDZY7,GQY1XT001C3RAI,GQY1XT001CHHLS,GQY1XT001DZM7Q,GQY1XT001CF66P,GQY1XT001BG3KK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E3LM5"; +secondCol = "GQY1XT001E3LM5,GQY1XT001DUSSC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1X2E"; +secondCol = "GQY1XT001E1X2E,GQY1XT001A0KTQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWYDQ"; +secondCol = "GQY1XT001DWYDQ,GQY1XT001C1LLT,GQY1XT001DOVUX,GQY1XT001BZW65,GQY1XT001C58QR,GQY1XT001EG6IL,GQY1XT001DD7E2,GQY1XT001C7ZHQ,GQY1XT001CTOLZ,GQY1XT001ER9QY,GQY1XT001AY5J9,GQY1XT001CZK2C,GQY1XT001EX521,GQY1XT001C1I9T,GQY1XT001CWQVK,GQY1XT001CL9E0,GQY1XT001A1YVY,GQY1XT001E4ZYV,GQY1XT001BSEWO,GQY1XT001EXU29,GQY1XT001BYWWO,GQY1XT001D7MPX,GQY1XT001BE9MI,GQY1XT001BZUKN,GQY1XT001BUG3C,GQY1XT001BZU5H,GQY1XT001C3QXF,GQY1XT001A8E1Z,GQY1XT001CJR7O,GQY1XT001A9ZRG,GQY1XT001C9TB8,GQY1XT001EC7QL,GQY1XT001BYLUF,GQY1XT001DSU8L,GQY1XT001CXZ44,GQY1XT001C4254,GQY1XT001B3FR0,GQY1XT001ESJF3,GQY1XT001DYA7T,GQY1XT001AK1YN,GQY1XT001CF2Y5,GQY1XT001ECN1L,GQY1XT001ER74B,GQY1XT001EF9R1,GQY1XT001DCLAK,GQY1XT001BHOZG,GQY1XT001CSK33,GQY1XT001C351I,GQY1XT001DB12J,GQY1XT001BFO5V,GQY1XT001DECNQ,GQY1XT001AQ9DX,GQY1XT001DF3YU,GQY1XT001AUY76,GQY1XT001DBWQQ,GQY1XT001D66OJ,GQY1XT001BQTN7,GQY1XT001AVOOT,GQY1XT001EHNYE,GQY1XT001DV497,GQY1XT001DDHJK,GQY1XT001BN94E,GQY1XT001AXNCR,GQY1XT001ARF5P,GQY1XT001AUFTH,GQY1XT001BYQW1,GQY1XT001AHYS1,GQY1XT001CUFDX,GQY1XT001B1HHV,GQY1XT001ASUVT,GQY1XT001B3J4Q,GQY1XT001D6T1U,GQY1XT001DYVLK,GQY1XT001DBSEU,GQY1XT001CI0PL,GQY1XT001AIGS5,GQY1XT001BPH9O,GQY1XT001A0HJK,GQY1XT001D6CGD,GQY1XT001B89GG,GQY1XT001BHXVH,GQY1XT001DA37G,GQY1XT001C0PI0,GQY1XT001DUIRU,GQY1XT001EIA77,GQY1XT001CY8O4,GQY1XT001CELYQ,GQY1XT001D9O7W,GQY1XT001CH675,GQY1XT001EQUXC,GQY1XT001AXWTB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN9I6"; +secondCol = "GQY1XT001DN9I6,GQY1XT001DQGY9,GQY1XT001BOGGT,GQY1XT001CSY76"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJWFM"; +secondCol = "GQY1XT001DJWFM,GQY1XT001BF792,GQY1XT001DYW84,GQY1XT001BDV4Z,GQY1XT001D0TNG,GQY1XT001EELHE,GQY1XT001D6PPZ,GQY1XT001A1TBQ,GQY1XT001B5TYU,GQY1XT001A3ULD,GQY1XT001DHET6,GQY1XT001DVJC4,GQY1XT001BFXA9,GQY1XT001AIMRX,GQY1XT001CZ4YM,GQY1XT001B3OFX,GQY1XT001EC1E3,GQY1XT001EGRIS,GQY1XT001DJTG6,GQY1XT001BQG2A,GQY1XT001A4B7F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHVO8"; +secondCol = "GQY1XT001DHVO8,GQY1XT001CJZ64,GQY1XT001EYO5X,GQY1XT001DSU08,GQY1XT001DORYS,GQY1XT001BWLAV,GQY1XT001BJHT1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH4I4"; +secondCol = "GQY1XT001DH4I4,GQY1XT001CXJBQ,GQY1XT001ATDC8,GQY1XT001AIT6L,GQY1XT001DJLJM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DADJM"; +secondCol = "GQY1XT001DADJM,GQY1XT001CLI6D,GQY1XT001DQVKS,GQY1XT001EVF0L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5TRF"; +secondCol = "GQY1XT001D5TRF,GQY1XT001BOAFY,GQY1XT001CNGYV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2UY9"; +secondCol = "GQY1XT001D2UY9,GQY1XT001BC1AC,GQY1XT001BWDTT,GQY1XT001B204T,GQY1XT001CN4BJ,GQY1XT001C7F8M,GQY1XT001EDOME,GQY1XT001DXGA3,GQY1XT001D7EBP,GQY1XT001C5RAQ,GQY1XT001BBOI4,GQY1XT001C3IEH,GQY1XT001AVP3Y,GQY1XT001BSFV2,GQY1XT001ATTYM,GQY1XT001BFRLL,GQY1XT001BRMTU,GQY1XT001CTO0M,GQY1XT001DPZKO,GQY1XT001CSHBF,GQY1XT001DVAWI,GQY1XT001AIKLZ,GQY1XT001EWZCG,GQY1XT001BV2SY,GQY1XT001CKJK7,GQY1XT001BCRZN,GQY1XT001DENES,GQY1XT001CTCXZ,GQY1XT001AXW9M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1463"; +secondCol = "GQY1XT001D1463,GQY1XT001D00AO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWRV8"; +secondCol = "GQY1XT001CWRV8,GQY1XT001CFZTT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVRVK"; +secondCol = "GQY1XT001CVRVK,GQY1XT001AJ1TK,GQY1XT001BTOS4,GQY1XT001EPLUO,GQY1XT001CB58C,GQY1XT001BALO9,GQY1XT001DJ6LP,GQY1XT001D3LE3,GQY1XT001CC931,GQY1XT001B8TZI,GQY1XT001CTM9L,GQY1XT001AX3V8,GQY1XT001E349T,GQY1XT001DGTFR,GQY1XT001BZ7EL,GQY1XT001B74N3,GQY1XT001ETKJV,GQY1XT001DY6NT,GQY1XT001DSLJD,GQY1XT001B8W9E,GQY1XT001D602B,GQY1XT001EHADZ,GQY1XT001C38SX,GQY1XT001ATIOJ,GQY1XT001DB3M2,GQY1XT001AH1AS,GQY1XT001BQKT8,GQY1XT001BOPQJ,GQY1XT001B4E6N,GQY1XT001EQE5F,GQY1XT001DVJ74"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUC2B"; +secondCol = "GQY1XT001CUC2B,GQY1XT001BTRHG,GQY1XT001B7XLH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRFHI"; +secondCol = "GQY1XT001CRFHI,GQY1XT001CYGSO,GQY1XT001D68M2,GQY1XT001CXFS2,GQY1XT001BZ7OW,GQY1XT001EBXNL,GQY1XT001CIN7N,GQY1XT001BCLWG,GQY1XT001CHEXJ,GQY1XT001BU8O7,GQY1XT001DB0VH,GQY1XT001CZXLW,GQY1XT001DZ9A1,GQY1XT001BUYPC,GQY1XT001C6VPA,GQY1XT001EFH76,GQY1XT001B2UUV,GQY1XT001BN3HZ,GQY1XT001AV00B,GQY1XT001DUR0O,GQY1XT001EKRZ7,GQY1XT001BLQUW,GQY1XT001DFNO6,GQY1XT001ANA8C,GQY1XT001C6F4Q,GQY1XT001EUVL1,GQY1XT001DHRB2,GQY1XT001D6L9E,GQY1XT001A9O7X,GQY1XT001CPJEE,GQY1XT001BISYJ,GQY1XT001AY0R3,GQY1XT001EPAVQ,GQY1XT001BVEUZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQZ2F"; +secondCol = "GQY1XT001CQZ2F,GQY1XT001ENVH3,GQY1XT001D8L6X,GQY1XT001AOURK,GQY1XT001DYU80,GQY1XT001BBF91,GQY1XT001EC4GH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMO4M"; +secondCol = "GQY1XT001CMO4M,GQY1XT001B5V0F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CF4I5"; +secondCol = "GQY1XT001CF4I5,GQY1XT001A2TB9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEE8H"; +secondCol = "GQY1XT001CEE8H,GQY1XT001E3Y21"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCAN6"; +secondCol = "GQY1XT001CCAN6,GQY1XT001EFQJK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9X04"; +secondCol = "GQY1XT001C9X04,GQY1XT001CG3K1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9UYZ"; +secondCol = "GQY1XT001C9UYZ,GQY1XT001EY0VP,GQY1XT001BHRBQ,GQY1XT001CO6R1,GQY1XT001EED51,GQY1XT001B2F5G,GQY1XT001B53DG,GQY1XT001CK0RM,GQY1XT001BEY5I,GQY1XT001B7UBE,GQY1XT001BECGB,GQY1XT001C817L,GQY1XT001BHQSP,GQY1XT001EYE38,GQY1XT001C4UCQ,GQY1XT001B7GJ6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C610G"; +secondCol = "GQY1XT001C610G,GQY1XT001CESBE,GQY1XT001EXRXD,GQY1XT001D9C31,GQY1XT001CEH2C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4J0B"; +secondCol = "GQY1XT001C4J0B,GQY1XT001DB8GU,GQY1XT001EO10G,GQY1XT001D9CL5,GQY1XT001AKT2A,GQY1XT001EDD15,GQY1XT001CO4YD,GQY1XT001D5TC1,GQY1XT001EWH75,GQY1XT001CDF26,GQY1XT001C1XH9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2OS7"; +secondCol = "GQY1XT001C2OS7,GQY1XT001A86MV,GQY1XT001EXB8E,GQY1XT001C0QP7,GQY1XT001B4BYJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1WMY"; +secondCol = "GQY1XT001C1WMY,GQY1XT001CRCG9,GQY1XT001AOU18,GQY1XT001EB6MN,GQY1XT001EGMAG,GQY1XT001EOSYO,GQY1XT001DDKK3,GQY1XT001CTDNS,GQY1XT001DI6F0,GQY1XT001CNGYR,GQY1XT001CGPCS,GQY1XT001EXK7K,GQY1XT001D7V2K,GQY1XT001CI0U4,GQY1XT001A8S44,GQY1XT001B8TVI,GQY1XT001DE1RQ,GQY1XT001BKMG9,GQY1XT001ESRJU,GQY1XT001EQD4M,GQY1XT001EL6L4,GQY1XT001B954N,GQY1XT001D0QF3,GQY1XT001EG6V4,GQY1XT001DJD37,GQY1XT001CWCCH,GQY1XT001AUAMM,GQY1XT001AP8T4,GQY1XT001DGKO0,GQY1XT001BPP3O,GQY1XT001DNVDF,GQY1XT001D8L88,GQY1XT001BY1KB,GQY1XT001A3C19,GQY1XT001EG4PP,GQY1XT001BB1VR,GQY1XT001BMN03,GQY1XT001DTSR8,GQY1XT001EVYAT,GQY1XT001BC7LY,GQY1XT001BMB5V,GQY1XT001ETTYF,GQY1XT001AKB7D,GQY1XT001BCVWB,GQY1XT001DS8GS,GQY1XT001AL1LD,GQY1XT001CAZUN,GQY1XT001DGTTO,GQY1XT001B36WO,GQY1XT001DJ4UG,GQY1XT001EZRBU,GQY1XT001EJB03,GQY1XT001AGAG5,GQY1XT001A85XZ,GQY1XT001BGR0Z,GQY1XT001CNPJR,GQY1XT001DD2OY,GQY1XT001CPNBB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BT9LZ"; +secondCol = "GQY1XT001BT9LZ,GQY1XT001B51Y0,GQY1XT001DQ8PK,GQY1XT001B9K17,GQY1XT001C3LS8,GQY1XT001CMHFV,GQY1XT001EI0ZH,GQY1XT001BV9LY,GQY1XT001BPFOY,GQY1XT001EDBWH,GQY1XT001CAHTT,GQY1XT001CLC7P,GQY1XT001A120P,GQY1XT001C72PO,GQY1XT001DRXY7,GQY1XT001EPOB2,GQY1XT001BHKH6,GQY1XT001DJQ5M,GQY1XT001ESXEZ,GQY1XT001CW7VP,GQY1XT001A9ER7,GQY1XT001DRNXQ,GQY1XT001C8WXZ,GQY1XT001B64MY,GQY1XT001CAZLM,GQY1XT001C2EUD,GQY1XT001BJ88M,GQY1XT001AM2OX,GQY1XT001B53NV,GQY1XT001AKFC9,GQY1XT001DLAGE,GQY1XT001CVBO3,GQY1XT001ARL0Q,GQY1XT001EUMDM,GQY1XT001CC803,GQY1XT001DFV2D,GQY1XT001CFZGL,GQY1XT001BJI0M,GQY1XT001D28CH,GQY1XT001DC2EM,GQY1XT001DCVDO,GQY1XT001EX6RG,GQY1XT001DFWYU,GQY1XT001BN04Y,GQY1XT001BYECE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRS60"; +secondCol = "GQY1XT001BRS60,GQY1XT001BJ7GI,GQY1XT001DWB0Y,GQY1XT001AR0CE,GQY1XT001DKELT,GQY1XT001B9SVX,GQY1XT001EWWEO,GQY1XT001CYKZO,GQY1XT001C9ZA3,GQY1XT001C45D5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLMSS"; +secondCol = "GQY1XT001BLMSS,GQY1XT001B4Q2Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFEVN"; +secondCol = "GQY1XT001BFEVN,GQY1XT001CWAV7,GQY1XT001BCTUP,GQY1XT001AS1KG,GQY1XT001DI6PN,GQY1XT001BUP7K,GQY1XT001DZKLA,GQY1XT001A2Q3L,GQY1XT001CZ02T,GQY1XT001BBTGR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCRZC"; +secondCol = "GQY1XT001BCRZC,GQY1XT001B4EXO,GQY1XT001B7NN9,GQY1XT001B8SM0,GQY1XT001CLF4E,GQY1XT001D72BI,GQY1XT001EQZ1D,GQY1XT001EEEXX,GQY1XT001EDGGI,GQY1XT001C3PSS,GQY1XT001BH8H3,GQY1XT001CQ0JX,GQY1XT001BZHAY,GQY1XT001AMB44,GQY1XT001EPJAB,GQY1XT001BA4YD,GQY1XT001AXHFW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBF5C"; +secondCol = "GQY1XT001BBF5C,GQY1XT001BPFU7,GQY1XT001D7MJS,GQY1XT001AN9EW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAF72"; +secondCol = "GQY1XT001BAF72,GQY1XT001DCXPP,GQY1XT001B2N0H,GQY1XT001CY6WS,GQY1XT001BRGON,GQY1XT001B7OPU,GQY1XT001DBN38,GQY1XT001DRH9K,GQY1XT001AIHH1,GQY1XT001DT38L,GQY1XT001AOAND,GQY1XT001EBAN9,GQY1XT001CV3W3,GQY1XT001EJHOR,GQY1XT001AU4VM,GQY1XT001BO1SR,GQY1XT001C366U,GQY1XT001BXDT3,GQY1XT001D61XP,GQY1XT001CPUVO,GQY1XT001BJSGA,GQY1XT001EZ145,GQY1XT001CVITE,GQY1XT001C265D,GQY1XT001CGHQ7,GQY1XT001EMKCB,GQY1XT001E089Q,GQY1XT001C6DP5,GQY1XT001BEZ7E,GQY1XT001BSCPP,GQY1XT001B4JQV,GQY1XT001AY8HH,GQY1XT001AW5N4,GQY1XT001D30SH,GQY1XT001DJEAP,GQY1XT001CWJ2V,GQY1XT001DCG3A,GQY1XT001CTFDS,GQY1XT001DUFUN,GQY1XT001C5OAI,GQY1XT001BNKH7,GQY1XT001DW9Y2,GQY1XT001CXVH3,GQY1XT001DROSG,GQY1XT001BL5RS,GQY1XT001CEHZQ,GQY1XT001BHA10,GQY1XT001EUYUE,GQY1XT001BUYL7,GQY1XT001BCQR3,GQY1XT001D2TXI,GQY1XT001A0T81,GQY1XT001ALQD0,GQY1XT001ASOEL,GQY1XT001DU2KV,GQY1XT001AGF1E,GQY1XT001CUCQ4,GQY1XT001DXOXR,GQY1XT001BTGGE,GQY1XT001COGZ5,GQY1XT001EW1EE,GQY1XT001DWH64,GQY1XT001DB3JV,GQY1XT001A8RUC,GQY1XT001BVGJT,GQY1XT001EEJYD,GQY1XT001D9L6Y,GQY1XT001EXEWP,GQY1XT001BBSYW,GQY1XT001B16G3,GQY1XT001EFY4S,GQY1XT001BRR3R,GQY1XT001BJCKT,GQY1XT001BE4WB,GQY1XT001BI90U,GQY1XT001EETBU,GQY1XT001BH0GM,GQY1XT001ECJWP,GQY1XT001BOC4F,GQY1XT001EORUF,GQY1XT001DR1MB,GQY1XT001BEOGP,GQY1XT001EIZMP,GQY1XT001BAA9G,GQY1XT001EIGMQ,GQY1XT001DRWV4,GQY1XT001B4IF1,GQY1XT001DT876,GQY1XT001EMGA7,GQY1XT001BCUPC,GQY1XT001E5C0M,GQY1XT001BCLI0,GQY1XT001CAI41,GQY1XT001EAQD7,GQY1XT001A2CP3,GQY1XT001B0DCO,GQY1XT001BYM2M,GQY1XT001BBPWZ,GQY1XT001BI0XX,GQY1XT001D0WUS,GQY1XT001CILTR,GQY1XT001A5EE6,GQY1XT001BE7RF,GQY1XT001DYRZW,GQY1XT001DPKXO,GQY1XT001CNI6J,GQY1XT001CJ9BE,GQY1XT001BULCR,GQY1XT001A386A,GQY1XT001CAQVM,GQY1XT001B2URG,GQY1XT001ETPF7,GQY1XT001EC5JG,GQY1XT001BMAP0,GQY1XT001BP0BW,GQY1XT001EPAPG,GQY1XT001BTBJY,GQY1XT001D1XJV,GQY1XT001CRC1K,GQY1XT001B30QY,GQY1XT001A5D34,GQY1XT001BLO75,GQY1XT001EVWWX,GQY1XT001C4AUV,GQY1XT001CZTKC,GQY1XT001DA8AN,GQY1XT001EZQE1,GQY1XT001DWG7P,GQY1XT001EH17Q,GQY1XT001ES1FH,GQY1XT001EVNCG,GQY1XT001B2MHG,GQY1XT001AY9T7,GQY1XT001ENW6O,GQY1XT001CAB4U,GQY1XT001BCAN4,GQY1XT001A4811,GQY1XT001ALDKB,GQY1XT001APBX7,GQY1XT001BDNQH,GQY1XT001C2NKH,GQY1XT001A0RDW,GQY1XT001AWLKI,GQY1XT001C1X2P,GQY1XT001CFKV2,GQY1XT001BLM68,GQY1XT001D2CYE,GQY1XT001BWU2F,GQY1XT001A2QN4,GQY1XT001BVURC,GQY1XT001B8S8Y,GQY1XT001DVER6,GQY1XT001AL4M6,GQY1XT001CKXE5,GQY1XT001DDTOU,GQY1XT001CLWH6,GQY1XT001B7NWZ,GQY1XT001DXO2D,GQY1XT001E2Y5R,GQY1XT001CEXXJ,GQY1XT001COTY3,GQY1XT001DW7WQ,GQY1XT001BDLKE,GQY1XT001ANG3Q,GQY1XT001EI9G7,GQY1XT001DB8T5,GQY1XT001DS2Y2,GQY1XT001BMSA2,GQY1XT001DKJ4Q,GQY1XT001BGW1S,GQY1XT001B5GP4,GQY1XT001ET52I,GQY1XT001EEID6,GQY1XT001CSY42,GQY1XT001CPGTN,GQY1XT001B3TZ9,GQY1XT001AP3FW,GQY1XT001C7L0X,GQY1XT001DR4KH,GQY1XT001BOFCE,GQY1XT001CEAPY,GQY1XT001CP95V,GQY1XT001EJQ0H,GQY1XT001BH3VI,GQY1XT001BRO06,GQY1XT001BJ6VG,GQY1XT001BCJC8,GQY1XT001BFRZS,GQY1XT001DN9AH,GQY1XT001BORA7,GQY1XT001BHR4Z,GQY1XT001DHVPN,GQY1XT001EB4HK,GQY1XT001C2X1B,GQY1XT001EIBO0,GQY1XT001B690H,GQY1XT001BDJCK,GQY1XT001E5I4L,GQY1XT001DW6CI,GQY1XT001CZ7SQ,GQY1XT001BUMUJ,GQY1XT001DTA7V,GQY1XT001DGZX8,GQY1XT001CDQCD,GQY1XT001BVDYW,GQY1XT001AYM47"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9Y3W"; +secondCol = "GQY1XT001B9Y3W,GQY1XT001BLD8A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9XO1"; +secondCol = "GQY1XT001B9XO1,GQY1XT001EWKHV,GQY1XT001B0E5Y,GQY1XT001B7SUX,GQY1XT001C8BOC,GQY1XT001ESYFG,GQY1XT001CS1GV,GQY1XT001EHC0F,GQY1XT001D5EY7,GQY1XT001CL3RY,GQY1XT001BEXEO,GQY1XT001CPDRT,GQY1XT001C6Y14,GQY1XT001D4U0O,GQY1XT001DPITO,GQY1XT001B0Q6D,GQY1XT001BXIX2,GQY1XT001COQYK,GQY1XT001EA6Z0,GQY1XT001E1OVF,GQY1XT001DZNAS,GQY1XT001B6TNO,GQY1XT001BFIJ6,GQY1XT001DFQH2,GQY1XT001D1WJW,GQY1XT001DWJ5E,GQY1XT001AMVA2,GQY1XT001A3CW3,GQY1XT001EAG05,GQY1XT001CW25F,GQY1XT001DNOH6,GQY1XT001AU78K,GQY1XT001D7J5D,GQY1XT001AQKP1,GQY1XT001D82XY,GQY1XT001CEJP0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7NBQ"; +secondCol = "GQY1XT001B7NBQ,GQY1XT001CMJE6,GQY1XT001COTWX,GQY1XT001DFRH2,GQY1XT001AQZZ2,GQY1XT001C15GE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6B6X"; +secondCol = "GQY1XT001B6B6X,GQY1XT001DPEXP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5FDE"; +secondCol = "GQY1XT001B5FDE,GQY1XT001EHDEE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B44ZE"; +secondCol = "GQY1XT001B44ZE,GQY1XT001B9S0X,GQY1XT001BKT7F,GQY1XT001DX0ZB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3RRH"; +secondCol = "GQY1XT001B3RRH,GQY1XT001EV7X0,GQY1XT001BYARY,GQY1XT001AUVP9,GQY1XT001DUICM,GQY1XT001BD19Q,GQY1XT001DTMS1,GQY1XT001APCBS,GQY1XT001DPKE5,GQY1XT001DWGR3,GQY1XT001CDKYK,GQY1XT001A2ZY3,GQY1XT001B4COC,GQY1XT001CSDQP,GQY1XT001AFR8F,GQY1XT001BTHEE,GQY1XT001DUI9P,GQY1XT001BWLC6,GQY1XT001AYWMS,GQY1XT001E00LB,GQY1XT001ES8Q2,GQY1XT001D3W72,GQY1XT001BNPTB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1FMW"; +secondCol = "GQY1XT001B1FMW,GQY1XT001B9STJ,GQY1XT001B8IVF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0S0G"; +secondCol = "GQY1XT001B0S0G,GQY1XT001CCS6Z,GQY1XT001DXCJN,GQY1XT001DLNBA,GQY1XT001ASXMV,GQY1XT001AYNH8,GQY1XT001AKL27,GQY1XT001EAKL8,GQY1XT001DPFIV,GQY1XT001BZA2N,GQY1XT001B0DN2,GQY1XT001CNOEB,GQY1XT001DROIJ,GQY1XT001CH4J1,GQY1XT001CWU3R,GQY1XT001BARPS,GQY1XT001CZQRU,GQY1XT001AY4IR,GQY1XT001CFLIP,GQY1XT001DKYQ5,GQY1XT001DFYEL,GQY1XT001C6HBT,GQY1XT001ENOCS,GQY1XT001DGDBV,GQY1XT001B7PLB,GQY1XT001BNYJA,GQY1XT001DIVWZ,GQY1XT001AMYOG,GQY1XT001CQIHU,GQY1XT001AOT47,GQY1XT001AFLL7,GQY1XT001A4UFH,GQY1XT001C1Z7B,GQY1XT001EJK16,GQY1XT001BHLU9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ7TX"; +secondCol = "GQY1XT001AZ7TX,GQY1XT001DHGSZ,GQY1XT001EEAA8,GQY1XT001EAFAG,GQY1XT001BE8UB,GQY1XT001EDOOJ,GQY1XT001DWV9A,GQY1XT001CYR08,GQY1XT001A41IH,GQY1XT001CDAOQ,GQY1XT001A9F0H,GQY1XT001EF6VD,GQY1XT001EPGLY,GQY1XT001E3YSR,GQY1XT001AUXC5,GQY1XT001B18S2,GQY1XT001BT08F,GQY1XT001AJIPO,GQY1XT001EDSE2,GQY1XT001BYO63,GQY1XT001DNKEF,GQY1XT001DBFCQ,GQY1XT001D8MJG,GQY1XT001DONWR,GQY1XT001DWH67,GQY1XT001A11NH,GQY1XT001BK52V,GQY1XT001CGK4S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWGGS"; +secondCol = "GQY1XT001AWGGS,GQY1XT001A86GK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW13I"; +secondCol = "GQY1XT001AW13I,GQY1XT001BMFWL,GQY1XT001B2QSD,GQY1XT001BWYVS,GQY1XT001DA5J4,GQY1XT001CULNP,GQY1XT001CBJOR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVVL8"; +secondCol = "GQY1XT001AVVL8,GQY1XT001ET3H0,GQY1XT001DW5P9,GQY1XT001DPJOJ,GQY1XT001AXN2I,GQY1XT001D0ZC8,GQY1XT001EAW16,GQY1XT001C8H2O,GQY1XT001BK65V,GQY1XT001DC6P8,GQY1XT001DC9HL,GQY1XT001AMUZ9,GQY1XT001BT1LV,GQY1XT001B1J7R,GQY1XT001D9YWA,GQY1XT001BDQMM,GQY1XT001BH74N,GQY1XT001DMW64,GQY1XT001CFODT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVDQY"; +secondCol = "GQY1XT001AVDQY,GQY1XT001EE8PQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP7WE"; +secondCol = "GQY1XT001AP7WE,GQY1XT001EVHME,GQY1XT001AHJZ3,GQY1XT001A64MY,GQY1XT001DO04K,GQY1XT001CK50L,GQY1XT001AGDV2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN9R6"; +secondCol = "GQY1XT001AN9R6,GQY1XT001AQTNF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMF1Z"; +secondCol = "GQY1XT001AMF1Z,GQY1XT001D8BM9,GQY1XT001EPX5D,GQY1XT001A6K5Z,GQY1XT001CWBZZ,GQY1XT001AW4MS,GQY1XT001EQK5J,GQY1XT001A04I5,GQY1XT001EJ87P,GQY1XT001EHPOA,GQY1XT001D1Y9V,GQY1XT001DEN0C,GQY1XT001BHZPH,GQY1XT001CE0LF,GQY1XT001C3L4W,GQY1XT001CKGXB,GQY1XT001BIQ8I,GQY1XT001A39PH,GQY1XT001CGXNJ,GQY1XT001DOXLY,GQY1XT001B0KCJ,GQY1XT001B1UKV,GQY1XT001B1DMR,GQY1XT001EJ6T9,GQY1XT001ES1GW,GQY1XT001B8CF6,GQY1XT001AZOSE,GQY1XT001CR7X1,GQY1XT001BXTSJ,GQY1XT001BE5DF,GQY1XT001DEWRF,GQY1XT001CI0V8,GQY1XT001EZHXI,GQY1XT001D76NX,GQY1XT001D3P13,GQY1XT001C5LML,GQY1XT001CJJ5K,GQY1XT001CQG46,GQY1XT001DE795,GQY1XT001DYYTB,GQY1XT001B6AAT,GQY1XT001AQ87W,GQY1XT001APSFQ,GQY1XT001CZ82P,GQY1XT001C3QX9,GQY1XT001B3L0Y,GQY1XT001A62PK,GQY1XT001COXMT,GQY1XT001D8IMV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AL3PU"; +secondCol = "GQY1XT001AL3PU,GQY1XT001BYY7F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIOL2"; +secondCol = "GQY1XT001AIOL2,GQY1XT001EUS6M,GQY1XT001B3WEG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFW79"; +secondCol = "GQY1XT001AFW79,GQY1XT001EV4OG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEZLH"; +secondCol = "GQY1XT001AEZLH,GQY1XT001COLGM,GQY1XT001D46X5,GQY1XT001AGGXM,GQY1XT001AITM3,GQY1XT001D7BRE,GQY1XT001CAGJ6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7064"; +secondCol = "GQY1XT001A7064,GQY1XT001C380W,GQY1XT001CQOZ0,GQY1XT001CW5RY,GQY1XT001EJ16H,GQY1XT001DY7KK,GQY1XT001CSIPF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6CSK"; +secondCol = "GQY1XT001A6CSK,GQY1XT001AETV0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5XOT"; +secondCol = "GQY1XT001A5XOT,GQY1XT001DAU7F,GQY1XT001B9CUE,GQY1XT001D3AKB,GQY1XT001CD4OO,GQY1XT001DIN0Y,GQY1XT001A7Q5L,GQY1XT001ALUTX,GQY1XT001D28T0,GQY1XT001A1QV1,GQY1XT001AOSEG,GQY1XT001A7EPD,GQY1XT001CE13Y,GQY1XT001ERLJ2,GQY1XT001BHWUD,GQY1XT001CYJ6S,GQY1XT001AFBL5,GQY1XT001DI1MF,GQY1XT001B8QZX,GQY1XT001AUO85"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5J6A"; +secondCol = "GQY1XT001A5J6A,GQY1XT001CH9RI,GQY1XT001CNIT3,GQY1XT001CQ95T,GQY1XT001CNCB7,GQY1XT001EWBML,GQY1XT001BQHTD,GQY1XT001CVYES,GQY1XT001DP6CQ,GQY1XT001C82UP,GQY1XT001B6UCH,GQY1XT001CQKA3,GQY1XT001B7KNH,GQY1XT001CPSDM,GQY1XT001A4XEX,GQY1XT001B8LJU,GQY1XT001B6T6R,GQY1XT001D8KIC,GQY1XT001D4ET5,GQY1XT001EAG28,GQY1XT001D7PRB,GQY1XT001CNCJ5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0G36"; +secondCol = "GQY1XT001A0G36,GQY1XT001BVE26,GQY1XT001CZZFG,GQY1XT001CASR7,GQY1XT001AUYUY,GQY1XT001B99CI,GQY1XT001AUN86,GQY1XT001DOXCT,GQY1XT001EW06E,GQY1XT001D4TC1,GQY1XT001BZR27"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZZNX"; +secondCol = "GQY1XT001EZZNX,GQY1XT001BLO2X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZL0F"; +secondCol = "GQY1XT001EZL0F,GQY1XT001CW5DA,GQY1XT001AX2Y2,GQY1XT001E1306,GQY1XT001CU62Q,GQY1XT001EHFGM,GQY1XT001C3JWC,GQY1XT001AH6XP,GQY1XT001ENKS8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZ03E"; +secondCol = "GQY1XT001EZ03E,GQY1XT001EHVWL,GQY1XT001BHLIU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYZ4F"; +secondCol = "GQY1XT001EYZ4F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYTQI"; +secondCol = "GQY1XT001EYTQI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYNL7"; +secondCol = "GQY1XT001EYNL7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYE6M"; +secondCol = "GQY1XT001EYE6M,GQY1XT001D69D7,GQY1XT001A1LWJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXZXC"; +secondCol = "GQY1XT001EXZXC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXZLY"; +secondCol = "GQY1XT001EXZLY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXOOM"; +secondCol = "GQY1XT001EXOOM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX24Z"; +secondCol = "GQY1XT001EX24Z,GQY1XT001AMCGM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWUBU"; +secondCol = "GQY1XT001EWUBU,GQY1XT001DJLCH,GQY1XT001B50B7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWJBM"; +secondCol = "GQY1XT001EWJBM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVP68"; +secondCol = "GQY1XT001EVP68"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVO39"; +secondCol = "GQY1XT001EVO39,GQY1XT001DK5QX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUELE"; +secondCol = "GQY1XT001EUELE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU3ZN"; +secondCol = "GQY1XT001EU3ZN,GQY1XT001D75TC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETY3N"; +secondCol = "GQY1XT001ETY3N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETV5R"; +secondCol = "GQY1XT001ETV5R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETSII"; +secondCol = "GQY1XT001ETSII,GQY1XT001CHAA6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ET9BS"; +secondCol = "GQY1XT001ET9BS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESYFW"; +secondCol = "GQY1XT001ESYFW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESY2M"; +secondCol = "GQY1XT001ESY2M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES0NY"; +secondCol = "GQY1XT001ES0NY,GQY1XT001CHS3K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQOBG"; +secondCol = "GQY1XT001EQOBG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQCKJ"; +secondCol = "GQY1XT001EQCKJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQ1UK"; +secondCol = "GQY1XT001EQ1UK,GQY1XT001CJ1MP,GQY1XT001B9Q41"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPWKA"; +secondCol = "GQY1XT001EPWKA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPCM9"; +secondCol = "GQY1XT001EPCM9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPA06"; +secondCol = "GQY1XT001EPA06"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOW0D"; +secondCol = "GQY1XT001EOW0D,GQY1XT001DVBMV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMQDS"; +secondCol = "GQY1XT001EMQDS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMIPL"; +secondCol = "GQY1XT001EMIPL,GQY1XT001D7EZ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM91Y"; +secondCol = "GQY1XT001EM91Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM3V4"; +secondCol = "GQY1XT001EM3V4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELV8X"; +secondCol = "GQY1XT001ELV8X,GQY1XT001D712M,GQY1XT001DN3V0,GQY1XT001DVIPV,GQY1XT001DHMN1,GQY1XT001A159O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELC1A"; +secondCol = "GQY1XT001ELC1A,GQY1XT001BDNF2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL9FP"; +secondCol = "GQY1XT001EL9FP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKKMD"; +secondCol = "GQY1XT001EKKMD,GQY1XT001CWD5A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJY90"; +secondCol = "GQY1XT001EJY90,GQY1XT001AOJ3V,GQY1XT001DWYLB,GQY1XT001C4COP,GQY1XT001BTO5V,GQY1XT001EPNDY,GQY1XT001E2Z9E,GQY1XT001DX1CD,GQY1XT001CFUQY,GQY1XT001A56N9,GQY1XT001B8PSB,GQY1XT001EM589,GQY1XT001DU1VM,GQY1XT001C6WRN,GQY1XT001D8APT,GQY1XT001BFI2C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJXCX"; +secondCol = "GQY1XT001EJXCX,GQY1XT001CAVCK,GQY1XT001BDQQ0,GQY1XT001BB3PH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJVJ8"; +secondCol = "GQY1XT001EJVJ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJSIK"; +secondCol = "GQY1XT001EJSIK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJC79"; +secondCol = "GQY1XT001EJC79,GQY1XT001DJATM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ8V5"; +secondCol = "GQY1XT001EJ8V5,GQY1XT001D69E7,GQY1XT001DSY6E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ37H"; +secondCol = "GQY1XT001EJ37H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ24C"; +secondCol = "GQY1XT001EJ24C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EIQO8"; +secondCol = "GQY1XT001EIQO8,GQY1XT001C3XYU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHRTI"; +secondCol = "GQY1XT001EHRTI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHPLG"; +secondCol = "GQY1XT001EHPLG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHPDN"; +secondCol = "GQY1XT001EHPDN,GQY1XT001CBCKV,GQY1XT001AW62C,GQY1XT001B9R4R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHHQV"; +secondCol = "GQY1XT001EHHQV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH12T"; +secondCol = "GQY1XT001EH12T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGK7D"; +secondCol = "GQY1XT001EGK7D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG5VE"; +secondCol = "GQY1XT001EG5VE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFRQ9"; +secondCol = "GQY1XT001EFRQ9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEEZ6"; +secondCol = "GQY1XT001EEEZ6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EE22V"; +secondCol = "GQY1XT001EE22V,GQY1XT001C84F0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDXUZ"; +secondCol = "GQY1XT001EDXUZ,GQY1XT001AQAOF,GQY1XT001E1H0Y,GQY1XT001ESXPK,GQY1XT001DBMAF,GQY1XT001D5T2C,GQY1XT001DPBXW,GQY1XT001CTO4V,GQY1XT001CSKQ7,GQY1XT001D528Z,GQY1XT001APKVX,GQY1XT001DEZR9,GQY1XT001AV5II,GQY1XT001DXN98,GQY1XT001B4EH6,GQY1XT001CXRVG,GQY1XT001A9LJH,GQY1XT001AMLSF,GQY1XT001C7H4M,GQY1XT001A53VN,GQY1XT001AULLX,GQY1XT001B62VL,GQY1XT001AIWB3,GQY1XT001CXT15,GQY1XT001DRA0D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDVDZ"; +secondCol = "GQY1XT001EDVDZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECOVZ"; +secondCol = "GQY1XT001ECOVZ,GQY1XT001DIE8A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC1PC"; +secondCol = "GQY1XT001EC1PC,GQY1XT001DPYAD,GQY1XT001ET5MS,GQY1XT001BJWC0,GQY1XT001CJPUZ,GQY1XT001AW3AN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBNLI"; +secondCol = "GQY1XT001EBNLI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBKJQ"; +secondCol = "GQY1XT001EBKJQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAXM4"; +secondCol = "GQY1XT001EAXM4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EADVY"; +secondCol = "GQY1XT001EADVY,GQY1XT001D9TLU,GQY1XT001B4BF5,GQY1XT001D9HNA,GQY1XT001B9L2M,GQY1XT001BLLWC,GQY1XT001BBSJ8,GQY1XT001EA7LP,GQY1XT001C8QTU,GQY1XT001CSUD6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA7AT"; +secondCol = "GQY1XT001EA7AT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E3176"; +secondCol = "GQY1XT001E3176"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E304Z"; +secondCol = "GQY1XT001E304Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1O3T"; +secondCol = "GQY1XT001E1O3T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E076I"; +secondCol = "GQY1XT001E076I,GQY1XT001CUKN2,GQY1XT001DKA6V,GQY1XT001EV3KP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ8G2"; +secondCol = "GQY1XT001DZ8G2,GQY1XT001CFNW1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ55W"; +secondCol = "GQY1XT001DZ55W,GQY1XT001CJWW5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYZRF"; +secondCol = "GQY1XT001DYZRF,GQY1XT001B7CD7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYT64"; +secondCol = "GQY1XT001DYT64"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYSF1"; +secondCol = "GQY1XT001DYSF1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYRS9"; +secondCol = "GQY1XT001DYRS9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYPI5"; +secondCol = "GQY1XT001DYPI5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYN2K"; +secondCol = "GQY1XT001DYN2K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYM8E"; +secondCol = "GQY1XT001DYM8E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYDGQ"; +secondCol = "GQY1XT001DYDGQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXFSS"; +secondCol = "GQY1XT001DXFSS,GQY1XT001DT347"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXCE4"; +secondCol = "GQY1XT001DXCE4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWX52"; +secondCol = "GQY1XT001DWX52"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW3U5"; +secondCol = "GQY1XT001DW3U5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVWF7"; +secondCol = "GQY1XT001DVWF7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVSKQ"; +secondCol = "GQY1XT001DVSKQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVP26"; +secondCol = "GQY1XT001DVP26,GQY1XT001CJQ6O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUPBA"; +secondCol = "GQY1XT001DUPBA,GQY1XT001AGVP9,GQY1XT001BYW08,GQY1XT001B3P4W,GQY1XT001C1CKW,GQY1XT001EB5OS,GQY1XT001BL1Z1,GQY1XT001BHMRQ,GQY1XT001DY6N4,GQY1XT001C4QD6,GQY1XT001CWGAF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUJQE"; +secondCol = "GQY1XT001DUJQE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUC9E"; +secondCol = "GQY1XT001DUC9E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU5IH"; +secondCol = "GQY1XT001DU5IH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU5G9"; +secondCol = "GQY1XT001DU5G9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTZQL"; +secondCol = "GQY1XT001DTZQL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTVYI"; +secondCol = "GQY1XT001DTVYI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTDNX"; +secondCol = "GQY1XT001DTDNX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DT8QU"; +secondCol = "GQY1XT001DT8QU,GQY1XT001AGFR9,GQY1XT001EB80L,GQY1XT001DECTD,GQY1XT001D34JL,GQY1XT001DZV72,GQY1XT001BBK3K,GQY1XT001A9EEK,GQY1XT001ALEU1,GQY1XT001AYS5M,GQY1XT001BP8K9,GQY1XT001D6QU1,GQY1XT001B3SC2,GQY1XT001CSIKG,GQY1XT001DC514,GQY1XT001CAENL,GQY1XT001BFXNJ,GQY1XT001A03QM,GQY1XT001BLPB7,GQY1XT001A46ZU,GQY1XT001EBKS0,GQY1XT001BLURX,GQY1XT001B6TZI,GQY1XT001EOFVJ,GQY1XT001C563M,GQY1XT001BCO8F,GQY1XT001EDNQ0,GQY1XT001C95HO,GQY1XT001DMNXX,GQY1XT001DG1YA,GQY1XT001EZ447,GQY1XT001D72Y3,GQY1XT001BQOZE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DT73O"; +secondCol = "GQY1XT001DT73O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DS1JN"; +secondCol = "GQY1XT001DS1JN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRPPW"; +secondCol = "GQY1XT001DRPPW,GQY1XT001C09CL,GQY1XT001B68BP,GQY1XT001B63WX,GQY1XT001CCD7Y,GQY1XT001EB1WG,GQY1XT001DMC8P,GQY1XT001DSORH,GQY1XT001BIEAI,GQY1XT001B9FEK,GQY1XT001ET84Y,GQY1XT001BC1HA,GQY1XT001DSTSD,GQY1XT001AS7Q4,GQY1XT001DZ58Y,GQY1XT001A7N03,GQY1XT001AGF6I,GQY1XT001APCXS,GQY1XT001EWFL3,GQY1XT001A4137"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRHRE"; +secondCol = "GQY1XT001DRHRE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQU6D"; +secondCol = "GQY1XT001DQU6D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQOL0"; +secondCol = "GQY1XT001DQOL0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQH6M"; +secondCol = "GQY1XT001DQH6M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQB6Y"; +secondCol = "GQY1XT001DQB6Y,GQY1XT001DUP5P,GQY1XT001CI05U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ6WQ"; +secondCol = "GQY1XT001DQ6WQ,GQY1XT001CIJJV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPU46"; +secondCol = "GQY1XT001DPU46"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPMQQ"; +secondCol = "GQY1XT001DPMQQ,GQY1XT001CRL7O,GQY1XT001BQI3T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPG56"; +secondCol = "GQY1XT001DPG56"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DORYK"; +secondCol = "GQY1XT001DORYK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOMBN"; +secondCol = "GQY1XT001DOMBN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOITQ"; +secondCol = "GQY1XT001DOITQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOESM"; +secondCol = "GQY1XT001DOESM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DO480"; +secondCol = "GQY1XT001DO480"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNKOZ"; +secondCol = "GQY1XT001DNKOZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMXE2"; +secondCol = "GQY1XT001DMXE2,GQY1XT001A93VG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMKGX"; +secondCol = "GQY1XT001DMKGX,GQY1XT001AT2W7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DM11M"; +secondCol = "GQY1XT001DM11M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLPOT"; +secondCol = "GQY1XT001DLPOT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLMPA"; +secondCol = "GQY1XT001DLMPA,GQY1XT001CW5QZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL5J3"; +secondCol = "GQY1XT001DL5J3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL4BQ"; +secondCol = "GQY1XT001DL4BQ,GQY1XT001D5YXY,GQY1XT001CC0D1,GQY1XT001B6ZES,GQY1XT001BKKJH,GQY1XT001EJ8W4,GQY1XT001AOYBQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL47B"; +secondCol = "GQY1XT001DL47B,GQY1XT001CGDSY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIUN5"; +secondCol = "GQY1XT001DIUN5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIS0K"; +secondCol = "GQY1XT001DIS0K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIM47"; +secondCol = "GQY1XT001DIM47"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIDBJ"; +secondCol = "GQY1XT001DIDBJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHWUM"; +secondCol = "GQY1XT001DHWUM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHOP9"; +secondCol = "GQY1XT001DHOP9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHLYL"; +secondCol = "GQY1XT001DHLYL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH9DZ"; +secondCol = "GQY1XT001DH9DZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGVVI"; +secondCol = "GQY1XT001DGVVI,GQY1XT001DZ6N8,GQY1XT001BIGU7,GQY1XT001D2FKS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFIYO"; +secondCol = "GQY1XT001DFIYO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFEAQ"; +secondCol = "GQY1XT001DFEAQ,GQY1XT001DSPKI,GQY1XT001ANZ4N,GQY1XT001AZMR3,GQY1XT001DCIAT,GQY1XT001A3Q0A,GQY1XT001ER5MA,GQY1XT001ED3DJ,GQY1XT001DJ2VV,GQY1XT001DQ4LI,GQY1XT001DWDJX,GQY1XT001B05GA,GQY1XT001CPLP6,GQY1XT001D7H24,GQY1XT001EE62I,GQY1XT001DADEU,GQY1XT001BHTXO,GQY1XT001A95RX,GQY1XT001CB3H5,GQY1XT001ATKLY,GQY1XT001CCCVR,GQY1XT001A8I9W,GQY1XT001A6VMF,GQY1XT001B90S7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFBY0"; +secondCol = "GQY1XT001DFBY0,GQY1XT001CLCOC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DETP8"; +secondCol = "GQY1XT001DETP8,GQY1XT001CL1OD,GQY1XT001C2N4V,GQY1XT001BOR5K,GQY1XT001EDYBX,GQY1XT001COUUY,GQY1XT001CX9C2,GQY1XT001BH2QR,GQY1XT001BKMMO,GQY1XT001B4CZN,GQY1XT001ESAA4,GQY1XT001ALOZG,GQY1XT001AUDH5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEOXH"; +secondCol = "GQY1XT001DEOXH,GQY1XT001ALNS4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEN9A"; +secondCol = "GQY1XT001DEN9A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEM5V"; +secondCol = "GQY1XT001DEM5V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEK0W"; +secondCol = "GQY1XT001DEK0W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DE7OZ"; +secondCol = "GQY1XT001DE7OZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDTEX"; +secondCol = "GQY1XT001DDTEX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDAO6"; +secondCol = "GQY1XT001DDAO6,GQY1XT001B7OHP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD70H"; +secondCol = "GQY1XT001DD70H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD2SA"; +secondCol = "GQY1XT001DD2SA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCJ7D"; +secondCol = "GQY1XT001DCJ7D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC7XN"; +secondCol = "GQY1XT001DC7XN,GQY1XT001C7Z0Y,GQY1XT001BURFU,GQY1XT001DXSRJ,GQY1XT001AO3H3,GQY1XT001CO6CX,GQY1XT001EMUKY,GQY1XT001BA8XF,GQY1XT001AX65L,GQY1XT001BZBUZ,GQY1XT001BLNMW,GQY1XT001CGC1N,GQY1XT001C9AO8,GQY1XT001D2YP5,GQY1XT001C1Z9P,GQY1XT001COL7V,GQY1XT001AV140,GQY1XT001DY0EK,GQY1XT001D5D0W,GQY1XT001CVKGI,GQY1XT001CJUU7,GQY1XT001ECCQ8,GQY1XT001C2PD0,GQY1XT001DYU5E,GQY1XT001EQ7VW,GQY1XT001C29OJ,GQY1XT001ECRGB,GQY1XT001A69QH,GQY1XT001DRYVA,GQY1XT001BHXKG,GQY1XT001A4IPA,GQY1XT001EBCBR,GQY1XT001E0ZQN,GQY1XT001C52IX,GQY1XT001C2BE8,GQY1XT001D4ZCB,GQY1XT001CMH7Q,GQY1XT001CQTVR,GQY1XT001DKYKA,GQY1XT001BQ9HL,GQY1XT001AUVEG,GQY1XT001EQNTQ,GQY1XT001DP1HN,GQY1XT001C7IRW,GQY1XT001DLK1U,GQY1XT001EZCJH,GQY1XT001AXAE9,GQY1XT001CSX3T,GQY1XT001A8VFV,GQY1XT001EU9EU,GQY1XT001AVEV6,GQY1XT001DQ11R,GQY1XT001ECL4N,GQY1XT001DD1I7,GQY1XT001D5O1N,GQY1XT001CETV1,GQY1XT001DVJAF,GQY1XT001ALZWN,GQY1XT001B6V7R,GQY1XT001ALGHL,GQY1XT001ESAIP,GQY1XT001B5QQX,GQY1XT001CB9ON,GQY1XT001DVAQH,GQY1XT001DPI36,GQY1XT001EVL55,GQY1XT001EIW1J,GQY1XT001BO3YB,GQY1XT001ASXQ1,GQY1XT001C1KLV,GQY1XT001CW4KL,GQY1XT001CMK9P,GQY1XT001BXMJ6,GQY1XT001BSJ47,GQY1XT001BS640,GQY1XT001BE9BV,GQY1XT001AQQ89"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBUC8"; +secondCol = "GQY1XT001DBUC8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBJBB"; +secondCol = "GQY1XT001DBJBB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DB8H8"; +secondCol = "GQY1XT001DB8H8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAG24"; +secondCol = "GQY1XT001DAG24"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9K26"; +secondCol = "GQY1XT001D9K26"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8B8W"; +secondCol = "GQY1XT001D8B8W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8755"; +secondCol = "GQY1XT001D8755"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7OHA"; +secondCol = "GQY1XT001D7OHA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7MZG"; +secondCol = "GQY1XT001D7MZG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7GR1"; +secondCol = "GQY1XT001D7GR1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6II6"; +secondCol = "GQY1XT001D6II6,GQY1XT001CJVLV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5V6Q"; +secondCol = "GQY1XT001D5V6Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D53Q1"; +secondCol = "GQY1XT001D53Q1,GQY1XT001CUET3,GQY1XT001CAVLL,GQY1XT001BKZV0,GQY1XT001DV9RM,GQY1XT001BLDTR,GQY1XT001C1UF6,GQY1XT001EYLVA,GQY1XT001EU44C,GQY1XT001A9IOC,GQY1XT001E1PZ1,GQY1XT001D1ZUC,GQY1XT001AZCXJ,GQY1XT001CVENN,GQY1XT001BCNXC,GQY1XT001DUE9N,GQY1XT001CND6E,GQY1XT001EF06R,GQY1XT001C4TLT,GQY1XT001DWR4H,GQY1XT001CN6HV,GQY1XT001CWIAY,GQY1XT001B3Q49,GQY1XT001A9VFQ,GQY1XT001A342W,GQY1XT001B01HK,GQY1XT001BPLU5,GQY1XT001EAHJJ,GQY1XT001EK8ZA,GQY1XT001EKMU5,GQY1XT001DJM1Q,GQY1XT001A3RLP,GQY1XT001BD1C6,GQY1XT001DT38R,GQY1XT001A2U3W,GQY1XT001C9R5S,GQY1XT001CX1BZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4YFG"; +secondCol = "GQY1XT001D4YFG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4IEY"; +secondCol = "GQY1XT001D4IEY,GQY1XT001BYFTH,GQY1XT001B4UCW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4G6Q"; +secondCol = "GQY1XT001D4G6Q,GQY1XT001BHF1Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D450X"; +secondCol = "GQY1XT001D450X,GQY1XT001CTXQN,GQY1XT001B25YF,GQY1XT001A0XRX,GQY1XT001DWXQF,GQY1XT001B7WA9,GQY1XT001B1R4F,GQY1XT001BCCOV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3T3X"; +secondCol = "GQY1XT001D3T3X,GQY1XT001D2UF4,GQY1XT001CN2MP,GQY1XT001C7SWA,GQY1XT001CZRQ5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3IK7"; +secondCol = "GQY1XT001D3IK7,GQY1XT001BJ3ZP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2RSU"; +secondCol = "GQY1XT001D2RSU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2QXP"; +secondCol = "GQY1XT001D2QXP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2C3B"; +secondCol = "GQY1XT001D2C3B,GQY1XT001BC74B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1Z7R"; +secondCol = "GQY1XT001D1Z7R,GQY1XT001ECP1U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D12EL"; +secondCol = "GQY1XT001D12EL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0XYA"; +secondCol = "GQY1XT001D0XYA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0UJP"; +secondCol = "GQY1XT001D0UJP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0MQQ"; +secondCol = "GQY1XT001D0MQQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0E4F"; +secondCol = "GQY1XT001D0E4F,GQY1XT001AK4J0,GQY1XT001ASJIZ,GQY1XT001BWKZ3,GQY1XT001BZNPB,GQY1XT001DZKLD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D03R0"; +secondCol = "GQY1XT001D03R0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D033P"; +secondCol = "GQY1XT001D033P,GQY1XT001BHRAO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYUAQ"; +secondCol = "GQY1XT001CYUAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYN5E"; +secondCol = "GQY1XT001CYN5E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXLAN"; +secondCol = "GQY1XT001CXLAN,GQY1XT001AQOI6,GQY1XT001A84L9,GQY1XT001DX7KI,GQY1XT001D1E71"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXJOX"; +secondCol = "GQY1XT001CXJOX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXGFO"; +secondCol = "GQY1XT001CXGFO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX3HF"; +secondCol = "GQY1XT001CX3HF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWL63"; +secondCol = "GQY1XT001CWL63"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWKMA"; +secondCol = "GQY1XT001CWKMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW63U"; +secondCol = "GQY1XT001CW63U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW42X"; +secondCol = "GQY1XT001CW42X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW2KE"; +secondCol = "GQY1XT001CW2KE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVWLK"; +secondCol = "GQY1XT001CVWLK,GQY1XT001A7XSV,GQY1XT001CYSG5,GQY1XT001DOMUO,GQY1XT001CE8II,GQY1XT001BVZM4,GQY1XT001COLZP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CV50F"; +secondCol = "GQY1XT001CV50F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUPYI"; +secondCol = "GQY1XT001CUPYI,GQY1XT001BGEUS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUJ15"; +secondCol = "GQY1XT001CUJ15,GQY1XT001A4VVU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTW9V"; +secondCol = "GQY1XT001CTW9V,GQY1XT001CRX7X,GQY1XT001C4HSZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTKIZ"; +secondCol = "GQY1XT001CTKIZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTF9O"; +secondCol = "GQY1XT001CTF9O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CT4ZD"; +secondCol = "GQY1XT001CT4ZD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSW2S"; +secondCol = "GQY1XT001CSW2S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSRVL"; +secondCol = "GQY1XT001CSRVL,GQY1XT001CGWX9,GQY1XT001B8TRA,GQY1XT001ED51M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSIAG"; +secondCol = "GQY1XT001CSIAG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSF7O"; +secondCol = "GQY1XT001CSF7O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRZOA"; +secondCol = "GQY1XT001CRZOA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRZFM"; +secondCol = "GQY1XT001CRZFM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRXBF"; +secondCol = "GQY1XT001CRXBF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQH75"; +secondCol = "GQY1XT001CQH75"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQAZN"; +secondCol = "GQY1XT001CQAZN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPWEO"; +secondCol = "GQY1XT001CPWEO,GQY1XT001DOD66,GQY1XT001C6E9F,GQY1XT001DUQDS,GQY1XT001ARWHH,GQY1XT001CHUPH,GQY1XT001EM1JE,GQY1XT001CM83E,GQY1XT001BED0W,GQY1XT001BSAQ6,GQY1XT001C1ETR,GQY1XT001BT3S0,GQY1XT001BHMDG,GQY1XT001B3VUD,GQY1XT001DYFWN,GQY1XT001BVQEZ,GQY1XT001CZGHZ,GQY1XT001C0TP9,GQY1XT001D4X7N,GQY1XT001CE0S6,GQY1XT001B2QDS,GQY1XT001C1A1S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPUCT"; +secondCol = "GQY1XT001CPUCT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPP9D"; +secondCol = "GQY1XT001CPP9D,GQY1XT001D0F0U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPONM"; +secondCol = "GQY1XT001CPONM,GQY1XT001DGC0O,GQY1XT001CVY7X,GQY1XT001EAY0J,GQY1XT001D2FHO,GQY1XT001BH3QB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPKJY"; +secondCol = "GQY1XT001CPKJY,GQY1XT001ATOZ3,GQY1XT001DHEQ0,GQY1XT001AZK93,GQY1XT001BQ8ZB,GQY1XT001EDK1O,GQY1XT001EMGCX,GQY1XT001CTDU4,GQY1XT001BD30L,GQY1XT001AJ9PQ,GQY1XT001ATX0V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COH2D"; +secondCol = "GQY1XT001COH2D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COC8H"; +secondCol = "GQY1XT001COC8H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO725"; +secondCol = "GQY1XT001CO725"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNM4Q"; +secondCol = "GQY1XT001CNM4Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMN1O"; +secondCol = "GQY1XT001CMN1O,GQY1XT001CLGIA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMIJN"; +secondCol = "GQY1XT001CMIJN,GQY1XT001CLM7L,GQY1XT001DI8DG,GQY1XT001EPGX5,GQY1XT001DOLFV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMEK1"; +secondCol = "GQY1XT001CMEK1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM3X9"; +secondCol = "GQY1XT001CM3X9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLRZ4"; +secondCol = "GQY1XT001CLRZ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLQMC"; +secondCol = "GQY1XT001CLQMC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKBTX"; +secondCol = "GQY1XT001CKBTX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJVHK"; +secondCol = "GQY1XT001CJVHK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJKVR"; +secondCol = "GQY1XT001CJKVR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ8YZ"; +secondCol = "GQY1XT001CJ8YZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CI4ZB"; +secondCol = "GQY1XT001CI4ZB,GQY1XT001CJ5K3,GQY1XT001EVQU4,GQY1XT001CJEG9,GQY1XT001B27E9,GQY1XT001ENTQK,GQY1XT001BKGSD,GQY1XT001E23UK,GQY1XT001CVOKL,GQY1XT001CSI2D,GQY1XT001DVTVN,GQY1XT001ANIEC,GQY1XT001A0RLT,GQY1XT001CYPAQ,GQY1XT001C44P5,GQY1XT001BTY48,GQY1XT001C4GGE,GQY1XT001AS260,GQY1XT001DINXP,GQY1XT001AWKLZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGUEK"; +secondCol = "GQY1XT001CGUEK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFUML"; +secondCol = "GQY1XT001CFUML"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFTIS"; +secondCol = "GQY1XT001CFTIS,GQY1XT001DEVOO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFB0Z"; +secondCol = "GQY1XT001CFB0Z,GQY1XT001DD8S8,GQY1XT001AYS0U,GQY1XT001B7CVV,GQY1XT001DFDRF,GQY1XT001BQORT,GQY1XT001EBI6L,GQY1XT001C6PF2,GQY1XT001CMJPA,GQY1XT001ALV89"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CF9D9"; +secondCol = "GQY1XT001CF9D9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CF1VL"; +secondCol = "GQY1XT001CF1VL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEOFM"; +secondCol = "GQY1XT001CEOFM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDKVO"; +secondCol = "GQY1XT001CDKVO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDDPN"; +secondCol = "GQY1XT001CDDPN,GQY1XT001BXRYA,GQY1XT001EJI6D,GQY1XT001B53TR,GQY1XT001ERM24,GQY1XT001CB04U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CD2TW"; +secondCol = "GQY1XT001CD2TW,GQY1XT001AOFM2,GQY1XT001EWMGY,GQY1XT001E06HB,GQY1XT001BFXIW,GQY1XT001CSWJH,GQY1XT001D6E8F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCYF2"; +secondCol = "GQY1XT001CCYF2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCWT6"; +secondCol = "GQY1XT001CCWT6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCR1M"; +secondCol = "GQY1XT001CCR1M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCI1I"; +secondCol = "GQY1XT001CCI1I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCGUZ"; +secondCol = "GQY1XT001CCGUZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCE0U"; +secondCol = "GQY1XT001CCE0U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CC1XY"; +secondCol = "GQY1XT001CC1XY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBVTY"; +secondCol = "GQY1XT001CBVTY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBFFO"; +secondCol = "GQY1XT001CBFFO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CB1V8"; +secondCol = "GQY1XT001CB1V8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAQ0P"; +secondCol = "GQY1XT001CAQ0P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAKTI"; +secondCol = "GQY1XT001CAKTI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAG4J"; +secondCol = "GQY1XT001CAG4J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9TCH"; +secondCol = "GQY1XT001C9TCH,GQY1XT001BMFQQ,GQY1XT001AOIKU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9SSG"; +secondCol = "GQY1XT001C9SSG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9NGS"; +secondCol = "GQY1XT001C9NGS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9K3I"; +secondCol = "GQY1XT001C9K3I,GQY1XT001D7LW3,GQY1XT001C4KEI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8MW2"; +secondCol = "GQY1XT001C8MW2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8MIJ"; +secondCol = "GQY1XT001C8MIJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8MC2"; +secondCol = "GQY1XT001C8MC2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C868Q"; +secondCol = "GQY1XT001C868Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7YPJ"; +secondCol = "GQY1XT001C7YPJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7PTU"; +secondCol = "GQY1XT001C7PTU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7C75"; +secondCol = "GQY1XT001C7C75"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C79Z4"; +secondCol = "GQY1XT001C79Z4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C718S"; +secondCol = "GQY1XT001C718S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6ZPG"; +secondCol = "GQY1XT001C6ZPG,GQY1XT001CET0R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6YHZ"; +secondCol = "GQY1XT001C6YHZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6PIP"; +secondCol = "GQY1XT001C6PIP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C61JR"; +secondCol = "GQY1XT001C61JR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5ZY5"; +secondCol = "GQY1XT001C5ZY5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4V1I"; +secondCol = "GQY1XT001C4V1I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4G89"; +secondCol = "GQY1XT001C4G89,GQY1XT001DD64P,GQY1XT001DPPMX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4B5B"; +secondCol = "GQY1XT001C4B5B,GQY1XT001C07ZQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C48GV"; +secondCol = "GQY1XT001C48GV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2094"; +secondCol = "GQY1XT001C2094,GQY1XT001ENJ5Q,GQY1XT001CDTP9,GQY1XT001BEJJV,GQY1XT001B6D98"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1ENK"; +secondCol = "GQY1XT001C1ENK,GQY1XT001CXRBR,GQY1XT001DW03U,GQY1XT001C0KBJ,GQY1XT001BQ343,GQY1XT001ATRJL,GQY1XT001DWHUE,GQY1XT001EPRXT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1E97"; +secondCol = "GQY1XT001C1E97,GQY1XT001AMCNF,GQY1XT001DMJKC,GQY1XT001EROPF,GQY1XT001DYS8K,GQY1XT001CWREI,GQY1XT001AKXKE,GQY1XT001EZOBQ,GQY1XT001EPER8,GQY1XT001DC3TC,GQY1XT001BRMYL,GQY1XT001BVETV,GQY1XT001CCDOH,GQY1XT001D0BJ7,GQY1XT001D2YK3,GQY1XT001DY4NK,GQY1XT001E4UMG,GQY1XT001D1A5J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1E4P"; +secondCol = "GQY1XT001C1E4P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1E0Z"; +secondCol = "GQY1XT001C1E0Z,GQY1XT001AZGE6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1C86"; +secondCol = "GQY1XT001C1C86,GQY1XT001DX2JX,GQY1XT001C1PZZ,GQY1XT001DKHDW,GQY1XT001DMY0P,GQY1XT001D8HSN,GQY1XT001D3TR8,GQY1XT001DF5PO,GQY1XT001DEB8E,GQY1XT001EUTFF,GQY1XT001BAI74,GQY1XT001E107Z,GQY1XT001EYJ1Z,GQY1XT001BU0L9,GQY1XT001BNHBT,GQY1XT001CWV74,GQY1XT001A58HL,GQY1XT001DOK2Z,GQY1XT001BU935,GQY1XT001CHM43,GQY1XT001CYKX5,GQY1XT001CCQFX,GQY1XT001BDGY3,GQY1XT001EGHHJ,GQY1XT001DZP6R,GQY1XT001A8FT1,GQY1XT001CM7LH,GQY1XT001BZJND,GQY1XT001BB1K5,GQY1XT001DMUS4,GQY1XT001CFY26,GQY1XT001EYV5T,GQY1XT001CO5E3,GQY1XT001BVFDW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0JEM"; +secondCol = "GQY1XT001C0JEM,GQY1XT001ESTC2,GQY1XT001CO2KP,GQY1XT001DOW52"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0IZK"; +secondCol = "GQY1XT001C0IZK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C08ZG"; +secondCol = "GQY1XT001C08ZG,GQY1XT001DNIRO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C02D6"; +secondCol = "GQY1XT001C02D6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZGJ5"; +secondCol = "GQY1XT001BZGJ5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZEEW"; +secondCol = "GQY1XT001BZEEW,GQY1XT001BVJ1G,GQY1XT001C8TDM,GQY1XT001CLW5Y,GQY1XT001DZEIO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZ5JC"; +secondCol = "GQY1XT001BZ5JC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYJE7"; +secondCol = "GQY1XT001BYJE7,GQY1XT001AMS6X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYHUX"; +secondCol = "GQY1XT001BYHUX,GQY1XT001C5ERQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY7S6"; +secondCol = "GQY1XT001BY7S6,GQY1XT001BTIC8,GQY1XT001DYD97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXVN0"; +secondCol = "GQY1XT001BXVN0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXRJZ"; +secondCol = "GQY1XT001BXRJZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXP1D"; +secondCol = "GQY1XT001BXP1D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BX4K9"; +secondCol = "GQY1XT001BX4K9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWQQE"; +secondCol = "GQY1XT001BWQQE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWFAY"; +secondCol = "GQY1XT001BWFAY,GQY1XT001ETTKO,GQY1XT001EYUN4,GQY1XT001BG5EZ,GQY1XT001C09AX,GQY1XT001C4R3S,GQY1XT001CR2EP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWD9D"; +secondCol = "GQY1XT001BWD9D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW2CO"; +secondCol = "GQY1XT001BW2CO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVPPE"; +secondCol = "GQY1XT001BVPPE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV13J"; +secondCol = "GQY1XT001BV13J,GQY1XT001BK077"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV02F"; +secondCol = "GQY1XT001BV02F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUOWZ"; +secondCol = "GQY1XT001BUOWZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUI0U"; +secondCol = "GQY1XT001BUI0U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUBF2"; +secondCol = "GQY1XT001BUBF2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTIDT"; +secondCol = "GQY1XT001BTIDT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSD18"; +secondCol = "GQY1XT001BSD18"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSBWI"; +secondCol = "GQY1XT001BSBWI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BS7HX"; +secondCol = "GQY1XT001BS7HX,GQY1XT001B14AJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRX1J"; +secondCol = "GQY1XT001BRX1J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRNZN"; +secondCol = "GQY1XT001BRNZN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRLCO"; +secondCol = "GQY1XT001BRLCO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BR887"; +secondCol = "GQY1XT001BR887"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQRGU"; +secondCol = "GQY1XT001BQRGU,GQY1XT001BEXDU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQN60"; +secondCol = "GQY1XT001BQN60"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQKS9"; +secondCol = "GQY1XT001BQKS9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQBAR"; +secondCol = "GQY1XT001BQBAR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ2OX"; +secondCol = "GQY1XT001BQ2OX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPBSW"; +secondCol = "GQY1XT001BPBSW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOO42"; +secondCol = "GQY1XT001BOO42,GQY1XT001BCK79,GQY1XT001DSLWS,GQY1XT001ESI6G,GQY1XT001ELZUX,GQY1XT001A0GK9,GQY1XT001A59TL,GQY1XT001C61Q5,GQY1XT001DU4P4,GQY1XT001DZGO6,GQY1XT001DGF2M,GQY1XT001EAB44,GQY1XT001EDPCJ,GQY1XT001CVLJ4,GQY1XT001DHX5H,GQY1XT001BALDG,GQY1XT001CWVGG,GQY1XT001EHNSM,GQY1XT001B9KRQ,GQY1XT001D3VDE,GQY1XT001CIGHG,GQY1XT001EJOAL,GQY1XT001EC9Z3,GQY1XT001BPJR8,GQY1XT001B45OL,GQY1XT001AHLNU,GQY1XT001A64HN,GQY1XT001A0UJ4,GQY1XT001BT4O4,GQY1XT001C5QLY,GQY1XT001BZLTN,GQY1XT001CB1K8,GQY1XT001A07FR,GQY1XT001C1YIQ,GQY1XT001C5P8W,GQY1XT001EU73V,GQY1XT001DVINB,GQY1XT001BK00Y,GQY1XT001AMLOP,GQY1XT001AYLWV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOD0P"; +secondCol = "GQY1XT001BOD0P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNX1P"; +secondCol = "GQY1XT001BNX1P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNKMD"; +secondCol = "GQY1XT001BNKMD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNINJ"; +secondCol = "GQY1XT001BNINJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNHEB"; +secondCol = "GQY1XT001BNHEB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNEKF"; +secondCol = "GQY1XT001BNEKF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BND9V"; +secondCol = "GQY1XT001BND9V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMICD"; +secondCol = "GQY1XT001BMICD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMGFB"; +secondCol = "GQY1XT001BMGFB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BM6X4"; +secondCol = "GQY1XT001BM6X4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLVK4"; +secondCol = "GQY1XT001BLVK4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLQ5R"; +secondCol = "GQY1XT001BLQ5R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BL97L"; +secondCol = "GQY1XT001BL97L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKNRP"; +secondCol = "GQY1XT001BKNRP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKMWZ"; +secondCol = "GQY1XT001BKMWZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKLLZ"; +secondCol = "GQY1XT001BKLLZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKCW6"; +secondCol = "GQY1XT001BKCW6,GQY1XT001BL3U7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKB24"; +secondCol = "GQY1XT001BKB24"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BK3EB"; +secondCol = "GQY1XT001BK3EB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ3RN"; +secondCol = "GQY1XT001BJ3RN,GQY1XT001CPUEZ,GQY1XT001BUANQ,GQY1XT001BZI62,GQY1XT001EUMVB,GQY1XT001CFVOF,GQY1XT001BLVEN,GQY1XT001CKUDR,GQY1XT001DJOYK,GQY1XT001CE65W,GQY1XT001DM742,GQY1XT001EBZU0,GQY1XT001DFD9B,GQY1XT001BJJC2,GQY1XT001ARYH8,GQY1XT001EF2AY,GQY1XT001C8XRQ,GQY1XT001A18ES,GQY1XT001DTVTV,GQY1XT001BSSZ5,GQY1XT001CC85T,GQY1XT001A5QR8,GQY1XT001EY9H5,GQY1XT001BAPRN,GQY1XT001AI6BF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ21N"; +secondCol = "GQY1XT001BJ21N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIYD4"; +secondCol = "GQY1XT001BIYD4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIPG4"; +secondCol = "GQY1XT001BIPG4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHUGP"; +secondCol = "GQY1XT001BHUGP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHQ7A"; +secondCol = "GQY1XT001BHQ7A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH0TX"; +secondCol = "GQY1XT001BH0TX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BG7V4"; +secondCol = "GQY1XT001BG7V4,GQY1XT001AJUX1,GQY1XT001AE6LV,GQY1XT001A15Q6,GQY1XT001BI7MQ,GQY1XT001CCNR4,GQY1XT001ESDP9,GQY1XT001CWKZ3,GQY1XT001BF4DE,GQY1XT001EH1KS,GQY1XT001BM0SA,GQY1XT001A3ZOI,GQY1XT001A86BD,GQY1XT001ENG49,GQY1XT001B8BS6,GQY1XT001AMACB,GQY1XT001DC3C1,GQY1XT001DLVW6,GQY1XT001AYED7,GQY1XT001DIXHF,GQY1XT001COVKN,GQY1XT001AI3EA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFAJA"; +secondCol = "GQY1XT001BFAJA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEFPN"; +secondCol = "GQY1XT001BEFPN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE0A4"; +secondCol = "GQY1XT001BE0A4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDJ3H"; +secondCol = "GQY1XT001BDJ3H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDFRW"; +secondCol = "GQY1XT001BDFRW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD58P"; +secondCol = "GQY1XT001BD58P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD0XN"; +secondCol = "GQY1XT001BD0XN,GQY1XT001B01FN,GQY1XT001CFZLO,GQY1XT001EF9SJ,GQY1XT001EFD0D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCZ7K"; +secondCol = "GQY1XT001BCZ7K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCYTA"; +secondCol = "GQY1XT001BCYTA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCW2Z"; +secondCol = "GQY1XT001BCW2Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCVHH"; +secondCol = "GQY1XT001BCVHH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCT3V"; +secondCol = "GQY1XT001BCT3V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC8K4"; +secondCol = "GQY1XT001BC8K4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC02D"; +secondCol = "GQY1XT001BC02D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBL1N"; +secondCol = "GQY1XT001BBL1N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB0AL"; +secondCol = "GQY1XT001BB0AL,GQY1XT001DUN01,GQY1XT001A7NL2,GQY1XT001EQCQB,GQY1XT001CT40R,GQY1XT001BJWJM,GQY1XT001B60R5,GQY1XT001DCHTI,GQY1XT001CIT89,GQY1XT001BL1M8,GQY1XT001ATVCY,GQY1XT001BE2CR,GQY1XT001AWI9E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAPQ9"; +secondCol = "GQY1XT001BAPQ9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BALRK"; +secondCol = "GQY1XT001BALRK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAB67"; +secondCol = "GQY1XT001BAB67"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAARR"; +secondCol = "GQY1XT001BAARR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9E2H"; +secondCol = "GQY1XT001B9E2H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8XHJ"; +secondCol = "GQY1XT001B8XHJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8XAS"; +secondCol = "GQY1XT001B8XAS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8MR4"; +secondCol = "GQY1XT001B8MR4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8G73"; +secondCol = "GQY1XT001B8G73"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7WUW"; +secondCol = "GQY1XT001B7WUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7WRH"; +secondCol = "GQY1XT001B7WRH,GQY1XT001B7N65"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7WHA"; +secondCol = "GQY1XT001B7WHA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7DYD"; +secondCol = "GQY1XT001B7DYD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6OQ6"; +secondCol = "GQY1XT001B6OQ6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B69EC"; +secondCol = "GQY1XT001B69EC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B60C3"; +secondCol = "GQY1XT001B60C3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5SFC"; +secondCol = "GQY1XT001B5SFC,GQY1XT001AZVVO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5NV4"; +secondCol = "GQY1XT001B5NV4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3YIX"; +secondCol = "GQY1XT001B3YIX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3X0W"; +secondCol = "GQY1XT001B3X0W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3FMW"; +secondCol = "GQY1XT001B3FMW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B33L9"; +secondCol = "GQY1XT001B33L9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2NMD"; +secondCol = "GQY1XT001B2NMD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2LC1"; +secondCol = "GQY1XT001B2LC1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2BSQ"; +secondCol = "GQY1XT001B2BSQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1NT0"; +secondCol = "GQY1XT001B1NT0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1L47"; +secondCol = "GQY1XT001B1L47"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B16R1"; +secondCol = "GQY1XT001B16R1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B15LZ"; +secondCol = "GQY1XT001B15LZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0XDL"; +secondCol = "GQY1XT001B0XDL,GQY1XT001ET9NQ,GQY1XT001DMT51"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0RDE"; +secondCol = "GQY1XT001B0RDE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0PXR"; +secondCol = "GQY1XT001B0PXR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0NDH"; +secondCol = "GQY1XT001B0NDH,GQY1XT001ALZN7,GQY1XT001EKRE5,GQY1XT001CCF0C,GQY1XT001EUXQY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0LOS"; +secondCol = "GQY1XT001B0LOS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B05N5"; +secondCol = "GQY1XT001B05N5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZULT"; +secondCol = "GQY1XT001AZULT,GQY1XT001B9W13"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZRLQ"; +secondCol = "GQY1XT001AZRLQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZHRG"; +secondCol = "GQY1XT001AZHRG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZAPT"; +secondCol = "GQY1XT001AZAPT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYX7D"; +secondCol = "GQY1XT001AYX7D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYQ5Z"; +secondCol = "GQY1XT001AYQ5Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXRGB"; +secondCol = "GQY1XT001AXRGB,GQY1XT001ED2N1,GQY1XT001A2NAF,GQY1XT001CBOR6,GQY1XT001CE762,GQY1XT001C8E6Y,GQY1XT001D19EB,GQY1XT001CCLEH,GQY1XT001AP96U,GQY1XT001B2F37,GQY1XT001BQKNJ,GQY1XT001DOXS7,GQY1XT001DL5Y2,GQY1XT001A2UWF,GQY1XT001CM4K4,GQY1XT001EOG1N,GQY1XT001A61PD,GQY1XT001B1RO7,GQY1XT001DUS2S,GQY1XT001C6X5V,GQY1XT001BBQ7N,GQY1XT001CQV0L,GQY1XT001DIMRH,GQY1XT001EBLS1,GQY1XT001CKL13,GQY1XT001BNHBM,GQY1XT001CP1JI,GQY1XT001A8LWJ,GQY1XT001EIF6E,GQY1XT001BLD8W,GQY1XT001D3P2L,GQY1XT001CLTN2,GQY1XT001BGAVD,GQY1XT001BPCWM,GQY1XT001CRDFS,GQY1XT001D1ONE,GQY1XT001C0S0B,GQY1XT001C1K9S,GQY1XT001AWUPI,GQY1XT001EAAU5,GQY1XT001CBYRI,GQY1XT001EDOW6,GQY1XT001BWS1T,GQY1XT001ERBJP,GQY1XT001A4D1W,GQY1XT001D06JT,GQY1XT001DPWJD,GQY1XT001D7DOE,GQY1XT001A4VTQ,GQY1XT001C9SMH,GQY1XT001EUZ38,GQY1XT001BLLKL,GQY1XT001CJSKJ,GQY1XT001AGFVW,GQY1XT001CMG5P,GQY1XT001DXIFX,GQY1XT001EKEFB,GQY1XT001AYCUJ,GQY1XT001DQN6U,GQY1XT001AP1OX,GQY1XT001AOY91,GQY1XT001B4JMV,GQY1XT001COS76,GQY1XT001CYYHD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXG2N"; +secondCol = "GQY1XT001AXG2N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXDRE"; +secondCol = "GQY1XT001AXDRE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWWIG"; +secondCol = "GQY1XT001AWWIG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW8WD"; +secondCol = "GQY1XT001AW8WD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW1W6"; +secondCol = "GQY1XT001AW1W6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW0BB"; +secondCol = "GQY1XT001AW0BB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVY6F"; +secondCol = "GQY1XT001AVY6F,GQY1XT001DGE1X,GQY1XT001ER7PZ,GQY1XT001C3LNR,GQY1XT001C63K1,GQY1XT001A35NU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVXPI"; +secondCol = "GQY1XT001AVXPI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVW8R"; +secondCol = "GQY1XT001AVW8R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVR1M"; +secondCol = "GQY1XT001AVR1M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV5CD"; +secondCol = "GQY1XT001AV5CD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUELS"; +secondCol = "GQY1XT001AUELS,GQY1XT001D3O2C,GQY1XT001A00V8,GQY1XT001A0KMZ,GQY1XT001EDQC5,GQY1XT001A336X,GQY1XT001D9KM4,GQY1XT001CPPF5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATVXJ"; +secondCol = "GQY1XT001ATVXJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATLSJ"; +secondCol = "GQY1XT001ATLSJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATF02"; +secondCol = "GQY1XT001ATF02"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASOCW"; +secondCol = "GQY1XT001ASOCW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASDN9"; +secondCol = "GQY1XT001ASDN9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AS27U"; +secondCol = "GQY1XT001AS27U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARTKK"; +secondCol = "GQY1XT001ARTKK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARRPS"; +secondCol = "GQY1XT001ARRPS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AREMS"; +secondCol = "GQY1XT001AREMS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQOQL"; +secondCol = "GQY1XT001AQOQL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQKOI"; +secondCol = "GQY1XT001AQKOI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQ7W0"; +secondCol = "GQY1XT001AQ7W0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APAHX"; +secondCol = "GQY1XT001APAHX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP4SY"; +secondCol = "GQY1XT001AP4SY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOQFM"; +secondCol = "GQY1XT001AOQFM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOPM0"; +secondCol = "GQY1XT001AOPM0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOKG2"; +secondCol = "GQY1XT001AOKG2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOB1H"; +secondCol = "GQY1XT001AOB1H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMBT9"; +secondCol = "GQY1XT001AMBT9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AL3K5"; +secondCol = "GQY1XT001AL3K5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKULV"; +secondCol = "GQY1XT001AKULV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKJCY"; +secondCol = "GQY1XT001AKJCY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJPC9"; +secondCol = "GQY1XT001AJPC9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJMR4"; +secondCol = "GQY1XT001AJMR4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ700"; +secondCol = "GQY1XT001AJ700"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ20W"; +secondCol = "GQY1XT001AJ20W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIWYF"; +secondCol = "GQY1XT001AIWYF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AILS4"; +secondCol = "GQY1XT001AILS4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIBN7"; +secondCol = "GQY1XT001AIBN7,GQY1XT001ECUPC,GQY1XT001C4YU4,GQY1XT001A739F,GQY1XT001B74II"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AI3O1"; +secondCol = "GQY1XT001AI3O1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHO2K"; +secondCol = "GQY1XT001AHO2K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGROC"; +secondCol = "GQY1XT001AGROC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGKBN"; +secondCol = "GQY1XT001AGKBN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGG6W"; +secondCol = "GQY1XT001AGG6W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGC6C"; +secondCol = "GQY1XT001AGC6C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFXPL"; +secondCol = "GQY1XT001AFXPL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFXF7"; +secondCol = "GQY1XT001AFXF7,GQY1XT001AKNNC,GQY1XT001CB9GP,GQY1XT001DFOPA,GQY1XT001B5MGA,GQY1XT001DF4FE,GQY1XT001E4HRQ,GQY1XT001B9XOI,GQY1XT001DYYAO,GQY1XT001EXOTN,GQY1XT001DWSJH,GQY1XT001EOO8R,GQY1XT001AVE7G,GQY1XT001EHBFO,GQY1XT001D7CFQ,GQY1XT001D6GD0,GQY1XT001B9NCB,GQY1XT001EH62R,GQY1XT001CX8FN,GQY1XT001AJN8U,GQY1XT001C0OWV,GQY1XT001EC6W9,GQY1XT001BDWJ1,GQY1XT001BY7C3,GQY1XT001EWCGD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFX9C"; +secondCol = "GQY1XT001AFX9C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEO5Y"; +secondCol = "GQY1XT001AEO5Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEDFI"; +secondCol = "GQY1XT001AEDFI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AD3AA"; +secondCol = "GQY1XT001AD3AA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8ZAM"; +secondCol = "GQY1XT001A8ZAM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8Y8K"; +secondCol = "GQY1XT001A8Y8K,GQY1XT001EW1V9,GQY1XT001CT7RX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8WF3"; +secondCol = "GQY1XT001A8WF3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8T80"; +secondCol = "GQY1XT001A8T80"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8Q74"; +secondCol = "GQY1XT001A8Q74"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8163"; +secondCol = "GQY1XT001A8163"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6YXB"; +secondCol = "GQY1XT001A6YXB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5HGV"; +secondCol = "GQY1XT001A5HGV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5DA8"; +secondCol = "GQY1XT001A5DA8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4XYG"; +secondCol = "GQY1XT001A4XYG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4O71"; +secondCol = "GQY1XT001A4O71,GQY1XT001CDZL7,GQY1XT001A94BO,GQY1XT001CQIPH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3N9X"; +secondCol = "GQY1XT001A3N9X,GQY1XT001AQGK1,GQY1XT001CZZQO,GQY1XT001EO4AE,GQY1XT001DQZ3E,GQY1XT001CW046,GQY1XT001EDA86,GQY1XT001BRXU1,GQY1XT001BGSL9,GQY1XT001B6KJL,GQY1XT001D0C5F,GQY1XT001DAYUD,GQY1XT001DI7AW,GQY1XT001COJ92,GQY1XT001D92HG,GQY1XT001B7U7P,GQY1XT001D7MH9,GQY1XT001C5QT3,GQY1XT001DO8UC,GQY1XT001DMGFG,GQY1XT001EDUYA,GQY1XT001DBS5V,GQY1XT001BRJHF,GQY1XT001ARWNX,GQY1XT001BH3OQ,GQY1XT001EV6BP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2ZIR"; +secondCol = "GQY1XT001A2ZIR,GQY1XT001BD0NS,GQY1XT001D2QXL,GQY1XT001EDWGD,GQY1XT001DWLRG,GQY1XT001B766Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2D1V"; +secondCol = "GQY1XT001A2D1V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A26B8"; +secondCol = "GQY1XT001A26B8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A22CL"; +secondCol = "GQY1XT001A22CL,GQY1XT001AVORM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A20SJ"; +secondCol = "GQY1XT001A20SJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1OAD"; +secondCol = "GQY1XT001A1OAD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A03SX"; +secondCol = "GQY1XT001A03SX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1T0J"; +secondCol = "GQY1XT001A1T0J,GQY1XT001DW6GE,GQY1XT001A3KFZ,GQY1XT001D0XM2,GQY1XT001D8STY,GQY1XT001CF3L8,GQY1XT001BRK8J,GQY1XT001C1JP5,GQY1XT001A4IUK,GQY1XT001EVAO1,GQY1XT001DZUKI,GQY1XT001AJ1NT,GQY1XT001EPZ4X,GQY1XT001DEIKL,GQY1XT001BQDLT,GQY1XT001ANTWW,GQY1XT001BZTCD,GQY1XT001EEOVU,GQY1XT001DDLXH,GQY1XT001C3YA9,GQY1XT001CJVML,GQY1XT001DV5AD,GQY1XT001A6B4W,GQY1XT001CZU5Q,GQY1XT001C6DAH,GQY1XT001BP037,GQY1XT001CXP3W,GQY1XT001EQ6J4,GQY1XT001CPXEF,GQY1XT001CUBAJ,GQY1XT001CO8ZA,GQY1XT001EUDCQ,GQY1XT001BJIII,GQY1XT001E23EX,GQY1XT001EAWGZ,GQY1XT001DZBD2,GQY1XT001A35W4,GQY1XT001CUJKR,GQY1XT001C6676,GQY1XT001C6L8O,GQY1XT001AT18H,GQY1XT001EDQWG,GQY1XT001DOAT0,GQY1XT001ARJHV,GQY1XT001DQAPU,GQY1XT001B4ABV,GQY1XT001DVV6C,GQY1XT001BWJHD,GQY1XT001B7UEC,GQY1XT001BEHVZ,GQY1XT001CTZL2,GQY1XT001BYOUX,GQY1XT001D9ET9,GQY1XT001EURD3,GQY1XT001EIMQN,GQY1XT001ATKIK,GQY1XT001AXDSQ,GQY1XT001AY73N,GQY1XT001CWYJ4,GQY1XT001EVNAA,GQY1XT001BQXDL,GQY1XT001BDSPI,GQY1XT001DKIEP,GQY1XT001BTXS5,GQY1XT001CJZ29,GQY1XT001D8SVS,GQY1XT001B6IOE,GQY1XT001BZNLH,GQY1XT001AJS97,GQY1XT001EFWRA,GQY1XT001A90D5,GQY1XT001A00GH,GQY1XT001B43GE,GQY1XT001D53GS,GQY1XT001CXULU,GQY1XT001B0TZ7,GQY1XT001EIUKV,GQY1XT001B6ABU,GQY1XT001A7BDX,GQY1XT001C33YJ,GQY1XT001DBO20,GQY1XT001ES16J,GQY1XT001CSA3R,GQY1XT001AXYYN,GQY1XT001EBLXN,GQY1XT001CMN1D,GQY1XT001AL4QF,GQY1XT001AWO99,GQY1XT001BPO9P,GQY1XT001B6UFU,GQY1XT001AH4CP,GQY1XT001A0JUW,GQY1XT001C2MA9,GQY1XT001BPZ49,GQY1XT001BYAYO,GQY1XT001C8SFU,GQY1XT001EWABQ,GQY1XT001EH38Z,GQY1XT001EJL0D,GQY1XT001EG7EX,GQY1XT001DY6SC,GQY1XT001DSTEB,GQY1XT001DIZUQ,GQY1XT001D8ZDK,GQY1XT001D27MV,GQY1XT001BUQYE,GQY1XT001BSHS9,GQY1XT001A2KRA,GQY1XT001AEY6R,GQY1XT001DGO87,GQY1XT001BU41X,GQY1XT001EHAH5,GQY1XT001DXFP1,GQY1XT001DTWI3,GQY1XT001BCOT4,GQY1XT001BHGGN,GQY1XT001EGVKO,GQY1XT001A5NV5,GQY1XT001BP6U6,GQY1XT001BT2IS,GQY1XT001E32AW,GQY1XT001AH7QM,GQY1XT001AM8S8,GQY1XT001B7U1E,GQY1XT001ERHBS,GQY1XT001ECX6Q,GQY1XT001C5EO6,GQY1XT001E0WPD,GQY1XT001EJ4IU,GQY1XT001EG5HK,GQY1XT001AXHNA,GQY1XT001CEWUS,GQY1XT001EF4SX,GQY1XT001CEPER,GQY1XT001A0UJ6,GQY1XT001B9EGP,GQY1XT001DUNI0,GQY1XT001CTT6C,GQY1XT001CQ370,GQY1XT001BDAZQ,GQY1XT001DUEL3,GQY1XT001A538V,GQY1XT001ESCCC,GQY1XT001AHWNA,GQY1XT001BEXSV,GQY1XT001A6J3K,GQY1XT001DJIW7,GQY1XT001C3HP6,GQY1XT001BUUL6,GQY1XT001AVC3D,GQY1XT001BCW3W,GQY1XT001DEB1B,GQY1XT001A0164,GQY1XT001CCCES,GQY1XT001AM08M,GQY1XT001EV5RA,GQY1XT001D5TVI,GQY1XT001AJGQL,GQY1XT001ES2EC,GQY1XT001ESZZ9,GQY1XT001BZVYX,GQY1XT001BX5KL,GQY1XT001B507Z,GQY1XT001EBYG2,GQY1XT001BJMX4,GQY1XT001AIN71,GQY1XT001D3367,GQY1XT001C2CIO,GQY1XT001A9T51"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWZS4"; +secondCol = "GQY1XT001CWZS4,GQY1XT001CIJZ8,GQY1XT001CL9YO,GQY1XT001BS8LI,GQY1XT001EIH33,GQY1XT001B9NF0,GQY1XT001CM6ZH,GQY1XT001CYU1S,GQY1XT001CLL5E,GQY1XT001A2039,GQY1XT001ECSE8,GQY1XT001BR4YM,GQY1XT001A52N7,GQY1XT001DSL6A,GQY1XT001CRB3G,GQY1XT001DA7LL,GQY1XT001EYS0D,GQY1XT001BFHU2,GQY1XT001DBMFJ,GQY1XT001ELXZA,GQY1XT001DLFCB,GQY1XT001CHJU5,GQY1XT001BLZO4,GQY1XT001B4Q1Y,GQY1XT001EH730,GQY1XT001E32E0,GQY1XT001AIIC7,GQY1XT001AMMM7,GQY1XT001ETFVD,GQY1XT001A104L,GQY1XT001CSXWO,GQY1XT001DW1KW,GQY1XT001CJ9PC,GQY1XT001CJ7Z1,GQY1XT001C61I4,GQY1XT001DHSHX,GQY1XT001A3MGB,GQY1XT001CKD65,GQY1XT001DWDLJ,GQY1XT001AD34Z,GQY1XT001D73A0,GQY1XT001A650O,GQY1XT001D6SRG,GQY1XT001B4V3Y,GQY1XT001B6UKY,GQY1XT001AVAU5,GQY1XT001AQB3T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF21Z"; +secondCol = "GQY1XT001BF21Z,GQY1XT001EVZFX,GQY1XT001CMDWD,GQY1XT001EZOJC,GQY1XT001CW1G6,GQY1XT001DR3TG,GQY1XT001CQR0I,GQY1XT001D43M2,GQY1XT001CSODF,GQY1XT001D8DLS,GQY1XT001ECN9G,GQY1XT001EB3NH,GQY1XT001C1M62,GQY1XT001D77RW,GQY1XT001DLYXR,GQY1XT001BVM71,GQY1XT001CWSYD,GQY1XT001CSE10,GQY1XT001D1G4X,GQY1XT001DXBQ2,GQY1XT001EZ3NA,GQY1XT001E3083,GQY1XT001EW68X,GQY1XT001EUB00,GQY1XT001ETMYI,GQY1XT001BK67E,GQY1XT001C2DSA,GQY1XT001AOBR1,GQY1XT001ASH4I,GQY1XT001BIA6P,GQY1XT001B01LF,GQY1XT001BYB48,GQY1XT001CBSXY,GQY1XT001BP57N,GQY1XT001BR1XO,GQY1XT001ENQ59,GQY1XT001D70V3,GQY1XT001DCNRF,GQY1XT001EGJ33,GQY1XT001A8OFT,GQY1XT001DJ9LZ,GQY1XT001DV6RX,GQY1XT001CFEM6,GQY1XT001AMXQ4,GQY1XT001CDNKX,GQY1XT001EEZWU,GQY1XT001DJP3D,GQY1XT001AV88W,GQY1XT001D2DTS,GQY1XT001BYGHB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSUXQ"; +secondCol = "GQY1XT001BSUXQ,GQY1XT001BUESE,GQY1XT001BPUA8,GQY1XT001CEUAU,GQY1XT001CO0IX,GQY1XT001E2GMY,GQY1XT001DZNQH,GQY1XT001C272N,GQY1XT001D42GA,GQY1XT001DINK4,GQY1XT001A2XX3,GQY1XT001BR7NR,GQY1XT001BMVTQ,GQY1XT001CYITB,GQY1XT001CEPY1,GQY1XT001CH9PM,GQY1XT001AGC9N,GQY1XT001BFAU3,GQY1XT001CSIL4,GQY1XT001ALJIX,GQY1XT001CGUYT,GQY1XT001D5640,GQY1XT001B85M8,GQY1XT001C93F5,GQY1XT001CM8ER,GQY1XT001DIL7D,GQY1XT001EKLQI,GQY1XT001A25GF,GQY1XT001ENTG8,GQY1XT001BNHR7,GQY1XT001CNTCK,GQY1XT001DR8K9,GQY1XT001DT2NT,GQY1XT001AN92D,GQY1XT001ELZHX,GQY1XT001DHOHT,GQY1XT001AX5I2,GQY1XT001AM43T,GQY1XT001AM1W2,GQY1XT001DS6F3,GQY1XT001D2IL3,GQY1XT001B59GU,GQY1XT001B9S7G,GQY1XT001BBEIT,GQY1XT001CVAMB,GQY1XT001EPO4Q,GQY1XT001CHPKE,GQY1XT001B5IK7,GQY1XT001CQYM6,GQY1XT001DIIX1,GQY1XT001A8JMI,GQY1XT001BYVX3,GQY1XT001E0PHD,GQY1XT001B6Z09,GQY1XT001DK0ZS,GQY1XT001CMYXO,GQY1XT001D0FZN,GQY1XT001A258S,GQY1XT001CEHZG,GQY1XT001CLR22,GQY1XT001B1B9V,GQY1XT001CLE7C,GQY1XT001BPX9Q,GQY1XT001B9HO6,GQY1XT001D7XQQ,GQY1XT001C11TN,GQY1XT001BW5UV,GQY1XT001EC311,GQY1XT001DV3LP,GQY1XT001D0EBM,GQY1XT001CNQNK,GQY1XT001BR9WD,GQY1XT001BNKIL,GQY1XT001AVZ14,GQY1XT001ASFCO,GQY1XT001A847X,GQY1XT001C2W3I,GQY1XT001ERSEV,GQY1XT001A9HW3,GQY1XT001BHB5C,GQY1XT001DD21Z,GQY1XT001CVJ9M,GQY1XT001C22NE,GQY1XT001DF6RU,GQY1XT001A9K6C,GQY1XT001EYGJZ,GQY1XT001CVA2P,GQY1XT001D9FM2,GQY1XT001ASFUE,GQY1XT001CUU03,GQY1XT001DHFGP,GQY1XT001CIMQX,GQY1XT001AITIT,GQY1XT001AKK1J,GQY1XT001DXATY,GQY1XT001CVUJH,GQY1XT001CQWFU,GQY1XT001ARR5Y,GQY1XT001A5LNZ,GQY1XT001BC5PJ,GQY1XT001DG66D,GQY1XT001BKQR6,GQY1XT001DJTPH,GQY1XT001DXU4Q,GQY1XT001DIEXN,GQY1XT001CHW6W,GQY1XT001BO9YS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEAMX"; +secondCol = "GQY1XT001DEAMX,GQY1XT001EGQ8N,GQY1XT001B35OM,GQY1XT001ASUN6,GQY1XT001CLHEJ,GQY1XT001BL5RV,GQY1XT001AUS24,GQY1XT001CRDH2,GQY1XT001DCY9G,GQY1XT001AKXLY,GQY1XT001BGV7G,GQY1XT001CA9UC,GQY1XT001BNBD1,GQY1XT001BU3B3,GQY1XT001CG3IB,GQY1XT001BN8G1,GQY1XT001DHNM1,GQY1XT001CQ71I,GQY1XT001C254C,GQY1XT001DAOET,GQY1XT001CZ00K,GQY1XT001E12NX,GQY1XT001ESJJ1,GQY1XT001BWE26,GQY1XT001DCMGV,GQY1XT001EGVKD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHQ8W"; +secondCol = "GQY1XT001BHQ8W,GQY1XT001EN8E4,GQY1XT001AJYAE,GQY1XT001DYGUF,GQY1XT001AUPXZ,GQY1XT001CCOUK,GQY1XT001CDD3L,GQY1XT001DZBCP,GQY1XT001B61OM,GQY1XT001AMBKR,GQY1XT001C927Y,GQY1XT001COFPX,GQY1XT001CKKTX,GQY1XT001C3M9H,GQY1XT001BBF1Z,GQY1XT001A1NQK,GQY1XT001DOE65,GQY1XT001A22QK,GQY1XT001DJZ5Q,GQY1XT001CUI37,GQY1XT001CPPHH,GQY1XT001EV471,GQY1XT001CHB91,GQY1XT001B7596,GQY1XT001EDIVH,GQY1XT001BD2SD,GQY1XT001AP7MO,GQY1XT001CLNKR,GQY1XT001E02T8,GQY1XT001E20GR,GQY1XT001EKBKB,GQY1XT001D9EGP,GQY1XT001EV290,GQY1XT001CU8O9,GQY1XT001DT1Y5,GQY1XT001DO6WK,GQY1XT001EW42P,GQY1XT001AUNQG,GQY1XT001CQXSN,GQY1XT001CGHCX,GQY1XT001DLOWZ,GQY1XT001C0W5X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH6RQ"; +secondCol = "GQY1XT001BH6RQ,GQY1XT001DNZGG,GQY1XT001BTZ1J,GQY1XT001CAE27,GQY1XT001DFCJ3,GQY1XT001BORTK,GQY1XT001AHFCH,GQY1XT001D8PPS,GQY1XT001DE7LL,GQY1XT001DQEHW,GQY1XT001DFOHR,GQY1XT001BYJCQ,GQY1XT001CRY8Z,GQY1XT001BMJYS,GQY1XT001ECIPF,GQY1XT001B826D,GQY1XT001DHFLG,GQY1XT001ES5AW,GQY1XT001CVMAW,GQY1XT001BVUID,GQY1XT001EKTO9,GQY1XT001CPGQU,GQY1XT001BANLP,GQY1XT001A72QI,GQY1XT001CI8S0,GQY1XT001B6WBE,GQY1XT001AS7EV,GQY1XT001CY1MQ,GQY1XT001EN6MH,GQY1XT001BEV2S,GQY1XT001BJ2C2,GQY1XT001DLQUP,GQY1XT001E3156,GQY1XT001BMUTY,GQY1XT001CV5MD,GQY1XT001EHYYA,GQY1XT001CXKTH,GQY1XT001A86J7,GQY1XT001AI9RP,GQY1XT001AMUYI,GQY1XT001B5CMM,GQY1XT001DITYM,GQY1XT001BL845,GQY1XT001CVBVM,GQY1XT001C245R,GQY1XT001ELR6O,GQY1XT001BHE6N,GQY1XT001DR3AZ,GQY1XT001B0VBM,GQY1XT001COMWC,GQY1XT001BCR82,GQY1XT001EI65H,GQY1XT001A9S4E,GQY1XT001CVJCF,GQY1XT001CTNTF,GQY1XT001B2VXO,GQY1XT001B7YCD,GQY1XT001EE89E,GQY1XT001B5A8D,GQY1XT001BH7AZ,GQY1XT001D3IHQ,GQY1XT001BCW49,GQY1XT001BOYUI,GQY1XT001CUUNJ,GQY1XT001EDNRM,GQY1XT001BK8R3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYPWE"; +secondCol = "GQY1XT001EYPWE,GQY1XT001DL0RH,GQY1XT001BJR6L,GQY1XT001ANLWG,GQY1XT001BGHGI,GQY1XT001DR9GF,GQY1XT001BGWBH,GQY1XT001C4KUF,GQY1XT001AG6J0,GQY1XT001EZATD,GQY1XT001EANQN,GQY1XT001CFSQW,GQY1XT001BOYAO,GQY1XT001CH3P1,GQY1XT001DA2DX,GQY1XT001CQGQK,GQY1XT001A41GY,GQY1XT001BDIFS,GQY1XT001DXRFY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DG39T"; +secondCol = "GQY1XT001DG39T,GQY1XT001BRLXA,GQY1XT001DNWM7,GQY1XT001B9OHW,GQY1XT001B5DQO,GQY1XT001DB0YZ,GQY1XT001EURYI,GQY1XT001DQ2ZI,GQY1XT001BQ31A,GQY1XT001DLGUM,GQY1XT001EG516,GQY1XT001CNGO6,GQY1XT001BI1JA,GQY1XT001BARW5,GQY1XT001A0E7X,GQY1XT001DTLQ8,GQY1XT001B7U28,GQY1XT001C3VFM,GQY1XT001DFFMI,GQY1XT001CT68Y,GQY1XT001EPK1O,GQY1XT001CDA0G,GQY1XT001A11JI,GQY1XT001D8DCW,GQY1XT001DPXIR,GQY1XT001DS14Y,GQY1XT001BGD31,GQY1XT001DFTCN,GQY1XT001BJ1M6,GQY1XT001C9GA4,GQY1XT001B7QOW,GQY1XT001EJZTO,GQY1XT001DJ7CQ,GQY1XT001DS2YZ,GQY1XT001AY6X3,GQY1XT001A2UOL,GQY1XT001ASB76,GQY1XT001DEXRU,GQY1XT001EANVU,GQY1XT001EHXT4,GQY1XT001DTVN6,GQY1XT001CG9F8,GQY1XT001C5TU0,GQY1XT001BTKOB,GQY1XT001EPEG9,GQY1XT001D9DZ2,GQY1XT001AD3OQ,GQY1XT001AXQIH,GQY1XT001A2SN2,GQY1XT001C4ZOR,GQY1XT001CEXSO,GQY1XT001CVWGR,GQY1XT001CRLXH,GQY1XT001DO8AU,GQY1XT001CZ2Y3,GQY1XT001ATSID,GQY1XT001EZHTL,GQY1XT001D6I9K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYPCU"; +secondCol = "GQY1XT001EYPCU,GQY1XT001AQK3Z,GQY1XT001DS9T6,GQY1XT001AUXN5,GQY1XT001C29P8,GQY1XT001BJ2AQ,GQY1XT001DAQ6Q,GQY1XT001CA2ZS,GQY1XT001C4PIZ,GQY1XT001BWHYS,GQY1XT001BI1M4,GQY1XT001BI2ND,GQY1XT001EYQ0B,GQY1XT001AR20Z,GQY1XT001A4QKJ,GQY1XT001BENKB,GQY1XT001EF9TU,GQY1XT001C1U0J,GQY1XT001EKOLO,GQY1XT001DJDST,GQY1XT001CLEPU,GQY1XT001DA3HL,GQY1XT001D3A57,GQY1XT001EHTW7,GQY1XT001DUSMR,GQY1XT001BZLL5,GQY1XT001BN58H,GQY1XT001A1FEC,GQY1XT001C2FJD,GQY1XT001EKEXD,GQY1XT001AE52Q,GQY1XT001AUNDC,GQY1XT001ELOVB,GQY1XT001ED4RR,GQY1XT001B5KI8,GQY1XT001EVU4P,GQY1XT001E2H1I,GQY1XT001BEYVJ,GQY1XT001BJZSQ,GQY1XT001CYDUK,GQY1XT001DRRR8,GQY1XT001A1C6K,GQY1XT001BWKCJ,GQY1XT001BJU7N,GQY1XT001BJSRQ,GQY1XT001D8N04,GQY1XT001C76X2,GQY1XT001CE5NG,GQY1XT001EPJKH,GQY1XT001BLFQP,GQY1XT001APB2Y,GQY1XT001C2QYC,GQY1XT001A47AD,GQY1XT001EJXKZ,GQY1XT001BS7JB,GQY1XT001BH75U,GQY1XT001DF5HV,GQY1XT001E3M2Q,GQY1XT001CK0HQ,GQY1XT001CDS1M,GQY1XT001A9VT0,GQY1XT001B6LU7,GQY1XT001B68DM,GQY1XT001BK0PC,GQY1XT001E3X3I,GQY1XT001DHLX0,GQY1XT001BZ35Y,GQY1XT001D7IGK,GQY1XT001CWJPP,GQY1XT001COFWM,GQY1XT001BP6M2,GQY1XT001B234O,GQY1XT001A9BRF,GQY1XT001EW34G,GQY1XT001EPUNP,GQY1XT001CGTNK,GQY1XT001B1W8P,GQY1XT001C0P1F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGKMY"; +secondCol = "GQY1XT001EGKMY,GQY1XT001AHD4Q,GQY1XT001CDL68,GQY1XT001AUH6D,GQY1XT001BTXHC,GQY1XT001AT1QC,GQY1XT001D1WMF,GQY1XT001BB9YV,GQY1XT001DVMIE,GQY1XT001BFEAO,GQY1XT001EB0JE,GQY1XT001DFMQ1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C40V6"; +secondCol = "GQY1XT001C40V6,GQY1XT001D9ZGF,GQY1XT001CL3VM,GQY1XT001ANK4O,GQY1XT001EUBF4,GQY1XT001BHDPY,GQY1XT001B76YB,GQY1XT001CIWQM,GQY1XT001CKCYV,GQY1XT001AMORF,GQY1XT001EF39F,GQY1XT001C7SQH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHCCH"; +secondCol = "GQY1XT001EHCCH,GQY1XT001COOZQ,GQY1XT001AM95V,GQY1XT001E1EZI,GQY1XT001DUJXJ,GQY1XT001DA39Y,GQY1XT001C2BA5,GQY1XT001BG5H9,GQY1XT001B9ZD1,GQY1XT001ALK8K,GQY1XT001CMPIY,GQY1XT001D36D2,GQY1XT001D9ISB,GQY1XT001CONSJ,GQY1XT001D2DHX,GQY1XT001D7PWG,GQY1XT001BWZ39,GQY1XT001AYU4O,GQY1XT001EQ9EJ,GQY1XT001BXYKP,GQY1XT001BEI4F,GQY1XT001A8JFZ,GQY1XT001EVGZR,GQY1XT001DR2T7,GQY1XT001DL3O1,GQY1XT001EX91Y,GQY1XT001CLI5K,GQY1XT001CUS6E,GQY1XT001B4V8D,GQY1XT001C73OO,GQY1XT001EBINR,GQY1XT001BN559,GQY1XT001AWI1B,GQY1XT001EZXOH,GQY1XT001AZ934,GQY1XT001BUN8B,GQY1XT001EEVRF,GQY1XT001C52UU,GQY1XT001D7L6A,GQY1XT001DW4VP,GQY1XT001DJHRK,GQY1XT001C18US,GQY1XT001APBDX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSKV4"; +secondCol = "GQY1XT001DSKV4,GQY1XT001DY2WZ,GQY1XT001DP4EC,GQY1XT001AYIGP,GQY1XT001D9VJ5,GQY1XT001ALHZN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBATA"; +secondCol = "GQY1XT001DBATA,GQY1XT001DBS9J,GQY1XT001EVF9A,GQY1XT001EA9L9,GQY1XT001B20Y9,GQY1XT001AN85U,GQY1XT001B3KY2,GQY1XT001CJ19Q,GQY1XT001EIUA5,GQY1XT001DVK4B,GQY1XT001CZOXX,GQY1XT001DHGYS,GQY1XT001DAYS8,GQY1XT001CMFBR,GQY1XT001C3SYF,GQY1XT001BE74S,GQY1XT001CY4MU,GQY1XT001D9PTC,GQY1XT001DRJET,GQY1XT001DBVZ3,GQY1XT001CJUWO,GQY1XT001CPDI4,GQY1XT001B5EHA,GQY1XT001BS6OA,GQY1XT001A2AOP,GQY1XT001D8ZWY,GQY1XT001EQS7Q,GQY1XT001EFNCU,GQY1XT001EQ696,GQY1XT001BVVTO,GQY1XT001B1538"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMQ72"; +secondCol = "GQY1XT001BMQ72,GQY1XT001ARVIV,GQY1XT001DY8XE,GQY1XT001EGIWX,GQY1XT001BWKB4,GQY1XT001A8NOW,GQY1XT001E053M,GQY1XT001DQZIG,GQY1XT001DAYDU,GQY1XT001AGJ38,GQY1XT001BN6LL,GQY1XT001CGBE4,GQY1XT001DOBN0,GQY1XT001DGYM7,GQY1XT001A6OX1,GQY1XT001BQWIF,GQY1XT001BCBRW,GQY1XT001EOQA7,GQY1XT001BO1J7,GQY1XT001AXOL8,GQY1XT001A87FT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENQS7"; +secondCol = "GQY1XT001ENQS7,GQY1XT001A427W,GQY1XT001BR9D3,GQY1XT001BBT3H,GQY1XT001D0XJY,GQY1XT001B4XR5,GQY1XT001B1UII,GQY1XT001AOWAQ,GQY1XT001EEQCR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDG3L"; +secondCol = "GQY1XT001EDG3L,GQY1XT001D5QBY,GQY1XT001B5GU3,GQY1XT001D9I34,GQY1XT001EE8H2,GQY1XT001BZFOQ,GQY1XT001C0PQA,GQY1XT001D25YQ,GQY1XT001AREY9,GQY1XT001DMQ1X,GQY1XT001ES7QN,GQY1XT001DU8CR,GQY1XT001DVXID,GQY1XT001BYPI8,GQY1XT001CVRMS,GQY1XT001BZFLW,GQY1XT001DH5PH,GQY1XT001DV591,GQY1XT001C7VAV,GQY1XT001BJQ5H,GQY1XT001DVZFV,GQY1XT001A7BMM,GQY1XT001BKKX0,GQY1XT001D7RZG,GQY1XT001D2ZIL,GQY1XT001EU61I,GQY1XT001CQQX3,GQY1XT001CM4OR,GQY1XT001D94OC,GQY1XT001BG0XK,GQY1XT001BDDB3,GQY1XT001C9GPM,GQY1XT001DM35M,GQY1XT001CBZ7K,GQY1XT001CBJO0,GQY1XT001AH7KO,GQY1XT001B73YL,GQY1XT001CE5B2,GQY1XT001DZUGB,GQY1XT001BSNHK,GQY1XT001APEKG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW4OA"; +secondCol = "GQY1XT001DW4OA,GQY1XT001DU6RJ,GQY1XT001D6YFF,GQY1XT001EWO70,GQY1XT001BJ2WC,GQY1XT001BOQ39,GQY1XT001BNGMU,GQY1XT001BAPXF,GQY1XT001AGX0Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D559F"; +secondCol = "GQY1XT001D559F,GQY1XT001AYGP9,GQY1XT001CDX4C,GQY1XT001C9G3I,GQY1XT001A9H55,GQY1XT001C9HOE,GQY1XT001ESJO5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C74CB"; +secondCol = "GQY1XT001C74CB,GQY1XT001CJCUR,GQY1XT001EKZEA,GQY1XT001CQA3H,GQY1XT001A3RPU,GQY1XT001BX4JN,GQY1XT001CX3JV,GQY1XT001DMFFC,GQY1XT001CD39X,GQY1XT001APIDT,GQY1XT001DEFRV,GQY1XT001AXJ6S,GQY1XT001EI6ND,GQY1XT001A1JMC,GQY1XT001DY3DT,GQY1XT001DEEJ2,GQY1XT001BEZGQ,GQY1XT001CAO7X,GQY1XT001BQX3N,GQY1XT001C5OUU,GQY1XT001EX30O,GQY1XT001EM7QP,GQY1XT001D7HEY,GQY1XT001AD3O6,GQY1XT001A28IW,GQY1XT001BQ99D,GQY1XT001BK5BP,GQY1XT001BD3KR,GQY1XT001C5ARN,GQY1XT001BRSZ4,GQY1XT001AIEZ5,GQY1XT001CUDWP,GQY1XT001E5VK1,GQY1XT001CZJJL,GQY1XT001BD9BB,GQY1XT001AF0RD,GQY1XT001BWQ3J,GQY1XT001CUU1D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYB9O"; +secondCol = "GQY1XT001BYB9O,GQY1XT001BHLNK,GQY1XT001D0C30,GQY1XT001BTEXE,GQY1XT001B0C3O,GQY1XT001EI628,GQY1XT001DYT4B,GQY1XT001D52M1,GQY1XT001BABAC,GQY1XT001DKZ4I,GQY1XT001DO8YO,GQY1XT001DL8FI,GQY1XT001DOBWT,GQY1XT001BPFOR,GQY1XT001BLTSR,GQY1XT001CHMF5,GQY1XT001AQNQD,GQY1XT001A6ZZ0,GQY1XT001BKDR3,GQY1XT001CAG7X,GQY1XT001BZIN7,GQY1XT001BJZPU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGXA5"; +secondCol = "GQY1XT001BGXA5,GQY1XT001B6UT4,GQY1XT001C03YJ,GQY1XT001D5JJ7,GQY1XT001EYNRK,GQY1XT001DRAPN,GQY1XT001DEIBB,GQY1XT001AZMJJ,GQY1XT001BY1YT,GQY1XT001B41G5,GQY1XT001DBT1Q,GQY1XT001A8UCR,GQY1XT001DU3JL,GQY1XT001BLKVW,GQY1XT001BJU9E,GQY1XT001CM9UQ,GQY1XT001B5TGO,GQY1XT001AXQ5P,GQY1XT001AZEH5,GQY1XT001DWVR2,GQY1XT001ERTVT,GQY1XT001D8ZNX,GQY1XT001DQ20I,GQY1XT001DJ9YF,GQY1XT001EEE8L,GQY1XT001BXSGN,GQY1XT001CKLML,GQY1XT001EZ3DC,GQY1XT001AXQOH,GQY1XT001C5U7P,GQY1XT001C828R,GQY1XT001AQ7FU,GQY1XT001AII4O,GQY1XT001D8TN5,GQY1XT001BQGBO,GQY1XT001A6N06,GQY1XT001D7PGM,GQY1XT001DLIZQ,GQY1XT001DIDI7,GQY1XT001DBHDF,GQY1XT001BKEI4,GQY1XT001BMU9A,GQY1XT001DQEJ9,GQY1XT001CD50H,GQY1XT001C9QYJ,GQY1XT001ESMCA,GQY1XT001AMFV4,GQY1XT001AN1DL,GQY1XT001DM81M,GQY1XT001C3K3J,GQY1XT001D3L06,GQY1XT001DN0EZ,GQY1XT001EN4QL,GQY1XT001CXGSC,GQY1XT001BOX2T,GQY1XT001B6F75,GQY1XT001BQ8CZ,GQY1XT001CFRKI,GQY1XT001EPZKU,GQY1XT001DK3BJ,GQY1XT001BEONC,GQY1XT001B7RJ7,GQY1XT001DMLBR,GQY1XT001DQ3X0,GQY1XT001DOWUE,GQY1XT001B2IOD,GQY1XT001EYX1F,GQY1XT001ATD1E,GQY1XT001EZGQ6,GQY1XT001BMS6W,GQY1XT001CQ50M,GQY1XT001EDAZQ,GQY1XT001EMGON,GQY1XT001B734B,GQY1XT001DRKLW,GQY1XT001C1UIG,GQY1XT001CDY61,GQY1XT001BKLS3,GQY1XT001DKZI3,GQY1XT001CMDK5,GQY1XT001A40VI,GQY1XT001EP17V,GQY1XT001CZWME,GQY1XT001DF8ZJ,GQY1XT001AXIEE,GQY1XT001D0789,GQY1XT001BYB83,GQY1XT001B716U,GQY1XT001B2CNR,GQY1XT001CDESQ,GQY1XT001D020S,GQY1XT001E52EH,GQY1XT001C7KWM,GQY1XT001CSFW7,GQY1XT001ASKIL,GQY1XT001A968R,GQY1XT001DZPSG,GQY1XT001CD9T9,GQY1XT001BI8PT,GQY1XT001B6REA,GQY1XT001D80GO,GQY1XT001A006L,GQY1XT001C3V6H,GQY1XT001EM7MO,GQY1XT001B62AP,GQY1XT001DG5RU,GQY1XT001EPEDX,GQY1XT001CPX8L,GQY1XT001BCQRQ,GQY1XT001C23VX,GQY1XT001DHVMV,GQY1XT001AIZA7,GQY1XT001CMFXF,GQY1XT001EQCGI,GQY1XT001DTQFD,GQY1XT001CPDTK,GQY1XT001C7PN0,GQY1XT001BYMHS,GQY1XT001ERN7Q,GQY1XT001EQES9,GQY1XT001CHKEI,GQY1XT001AVVU6,GQY1XT001B9YKI,GQY1XT001CU1BE,GQY1XT001A69FV,GQY1XT001C78IE,GQY1XT001ES3GS,GQY1XT001A9V79,GQY1XT001AI5NU,GQY1XT001A4JJS,GQY1XT001BFEI4,GQY1XT001CTTDZ,GQY1XT001D1VNW,GQY1XT001BW7U8,GQY1XT001BZY2R,GQY1XT001CE3CM,GQY1XT001AOR7R,GQY1XT001C56BD,GQY1XT001A6YYO,GQY1XT001EE46A,GQY1XT001A61V9,GQY1XT001BOP8S,GQY1XT001DPCC5,GQY1XT001B7RX8,GQY1XT001BCKAF,GQY1XT001AFY3N,GQY1XT001CC4B5,GQY1XT001DZRVQ,GQY1XT001BKZF9,GQY1XT001EMO4P,GQY1XT001CXCW9,GQY1XT001BRB35,GQY1XT001CVJX3,GQY1XT001BQZJ6,GQY1XT001CBT2T,GQY1XT001A1QQ5,GQY1XT001D65BG,GQY1XT001E2HHY,GQY1XT001B6T2L,GQY1XT001CDC0Q,GQY1XT001CY646,GQY1XT001D5T6Y,GQY1XT001C7SCH,GQY1XT001AFBTL,GQY1XT001CYO7I,GQY1XT001CK3C7,GQY1XT001ELNRD,GQY1XT001CZET7,GQY1XT001BOF2L,GQY1XT001EPNWP,GQY1XT001C2KS2,GQY1XT001DKINU,GQY1XT001B44LH,GQY1XT001DR6LS,GQY1XT001E1XGH,GQY1XT001AY5EH,GQY1XT001CX7M4,GQY1XT001BB5D0,GQY1XT001BRJZ9,GQY1XT001DR3A6,GQY1XT001CFOUO,GQY1XT001CPH7X,GQY1XT001DN0AL,GQY1XT001CZYK1,GQY1XT001BOKEA,GQY1XT001DVO5B,GQY1XT001CW9IU,GQY1XT001BEVF2,GQY1XT001EGFD8,GQY1XT001CTKZ4,GQY1XT001BTUAI,GQY1XT001ESNJT,GQY1XT001ELZNU,GQY1XT001DYLQS,GQY1XT001DUL44,GQY1XT001CN7FW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A69AD"; +secondCol = "GQY1XT001A69AD,GQY1XT001D84X3,GQY1XT001E23AN,GQY1XT001BG9L6,GQY1XT001CNC13,GQY1XT001A2B1R,GQY1XT001DOPPQ,GQY1XT001CA4TG,GQY1XT001EDMOR,GQY1XT001DCCA3,GQY1XT001A4AH3,GQY1XT001EE0JB,GQY1XT001DS7LM,GQY1XT001A2BQO,GQY1XT001A8C4F,GQY1XT001DDG8F,GQY1XT001BSZ5H,GQY1XT001EN0S2,GQY1XT001CNBG2,GQY1XT001APKSB,GQY1XT001BUY1F,GQY1XT001EUCAM,GQY1XT001E0WSE,GQY1XT001EOUEW,GQY1XT001BYXN1,GQY1XT001CCQGK,GQY1XT001E0SU6,GQY1XT001D2UR4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZ7ET"; +secondCol = "GQY1XT001EZ7ET,GQY1XT001AO1J9,GQY1XT001A99T1,GQY1XT001AXR4K,GQY1XT001EG6NC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1YNT"; +secondCol = "GQY1XT001E1YNT,GQY1XT001DV4P0,GQY1XT001EPYXU,GQY1XT001EN3H8,GQY1XT001BO43V,GQY1XT001CJ6EF,GQY1XT001C050P,GQY1XT001EMJR7,GQY1XT001DIF8P,GQY1XT001ETVJ1,GQY1XT001DGX06,GQY1XT001AMUEK,GQY1XT001BYXJS,GQY1XT001BH4UD,GQY1XT001AKL9C,GQY1XT001B5Z18,GQY1XT001BC7OW,GQY1XT001AX46W,GQY1XT001B85LA,GQY1XT001CWEF3,GQY1XT001DSEB6,GQY1XT001D6MVT,GQY1XT001CDO91,GQY1XT001C0ZD5,GQY1XT001CVNFJ,GQY1XT001AUGLI,GQY1XT001AV9RQ,GQY1XT001AMJBH,GQY1XT001DA7D6,GQY1XT001D7EEI,GQY1XT001EU0R8,GQY1XT001C8MDW,GQY1XT001B12YM,GQY1XT001BWKPN,GQY1XT001D8DJ5,GQY1XT001C02S1,GQY1XT001E0T7N,GQY1XT001AH3QR,GQY1XT001BE46G,GQY1XT001EVHKW,GQY1XT001B6NMT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDQVF"; +secondCol = "GQY1XT001DDQVF,GQY1XT001B52K1,GQY1XT001BZJ25"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTZM0"; +secondCol = "GQY1XT001CTZM0,GQY1XT001CH8AS,GQY1XT001BEI10"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCJT7"; +secondCol = "GQY1XT001CCJT7,GQY1XT001EIDTC,GQY1XT001D4W2B,GQY1XT001BIN1M,GQY1XT001AMVS5,GQY1XT001CPYPQ,GQY1XT001A1CTR,GQY1XT001C1EWQ,GQY1XT001C7UVE,GQY1XT001BHJAW,GQY1XT001DLQDC,GQY1XT001BBSNC,GQY1XT001COUM2,GQY1XT001CGYHM,GQY1XT001DXE6F,GQY1XT001EUM6N,GQY1XT001AV920,GQY1XT001D0O87,GQY1XT001AYGZK,GQY1XT001B9V4U,GQY1XT001EK3HI,GQY1XT001EN814,GQY1XT001EIEE6,GQY1XT001BTYT3,GQY1XT001DV45O,GQY1XT001CI380,GQY1XT001A3FO4,GQY1XT001A25I4,GQY1XT001DKO3T,GQY1XT001COMU2,GQY1XT001BRFJC,GQY1XT001CC0YZ,GQY1XT001BQV5X,GQY1XT001DG5KF,GQY1XT001EJEIU,GQY1XT001DGYOB,GQY1XT001AD69X,GQY1XT001EME5P,GQY1XT001BXTGL,GQY1XT001ANUCG,GQY1XT001B1OOD,GQY1XT001CJDF3,GQY1XT001CMDSQ,GQY1XT001BQMY3,GQY1XT001DCO5J,GQY1XT001B8UKO,GQY1XT001B8BTX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9JY3"; +secondCol = "GQY1XT001C9JY3,GQY1XT001B5BNC,GQY1XT001EW4AS,GQY1XT001AJIQ9,GQY1XT001ARDSA,GQY1XT001B8L77,GQY1XT001BWH2F,GQY1XT001AHX3Y,GQY1XT001EV5Y3,GQY1XT001C943L,GQY1XT001A3F5N,GQY1XT001DHYX1,GQY1XT001EIGRR,GQY1XT001C5ART,GQY1XT001C6PXX,GQY1XT001EEY39,GQY1XT001CTMSV,GQY1XT001C863F,GQY1XT001A69GH,GQY1XT001D08H4,GQY1XT001AGHAM,GQY1XT001EM0OH,GQY1XT001DKP38,GQY1XT001CK4C3,GQY1XT001BBS7E,GQY1XT001BOG0X,GQY1XT001DAZCI,GQY1XT001D1REX,GQY1XT001CO1YG,GQY1XT001A5GKE,GQY1XT001D6UC3,GQY1XT001EBZ5Z,GQY1XT001AGQ0W,GQY1XT001CQPSP,GQY1XT001A8YMF,GQY1XT001DZ5T8,GQY1XT001CXSL2,GQY1XT001B0KO3,GQY1XT001ALV7X,GQY1XT001EZ6ID,GQY1XT001DMHEK,GQY1XT001BKRRF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5F0S"; +secondCol = "GQY1XT001C5F0S,GQY1XT001ATFVU,GQY1XT001AKL06,GQY1XT001DZ49C,GQY1XT001C9LAW,GQY1XT001BX0ZX,GQY1XT001BRR4G,GQY1XT001ELJEQ,GQY1XT001DEJWE,GQY1XT001EAT8K,GQY1XT001AROGS,GQY1XT001CSQRM,GQY1XT001EDO9X,GQY1XT001CP5EL,GQY1XT001D522A,GQY1XT001APWCC,GQY1XT001EGBQB,GQY1XT001BQO5O,GQY1XT001CBQBH,GQY1XT001D7NRU,GQY1XT001CU1VJ,GQY1XT001D1ZPM,GQY1XT001ANNS5,GQY1XT001CPVWV,GQY1XT001DWEMN,GQY1XT001CM9BX,GQY1XT001EA9KA,GQY1XT001BG5IP,GQY1XT001CF5H0,GQY1XT001CEC4S,GQY1XT001CTLAF,GQY1XT001B56QC,GQY1XT001BNRM4,GQY1XT001DX0TW,GQY1XT001AQGPL,GQY1XT001EH7ND,GQY1XT001AQQMF,GQY1XT001B1CWT,GQY1XT001E1KI9,GQY1XT001AKUVU,GQY1XT001DBVBX,GQY1XT001CP3KM,GQY1XT001AW1J5,GQY1XT001BPCXF,GQY1XT001CYWQR,GQY1XT001D68SX,GQY1XT001CRVW0,GQY1XT001COZ37,GQY1XT001BJ3G9,GQY1XT001ELAX1,GQY1XT001D72M9,GQY1XT001DFK15,GQY1XT001C8G5J,GQY1XT001CVV17,GQY1XT001AI584,GQY1XT001CLO49,GQY1XT001BUIJ8,GQY1XT001EQG9K,GQY1XT001B1VVF,GQY1XT001AK475,GQY1XT001AXTDH,GQY1XT001C3P4C,GQY1XT001DM1NZ,GQY1XT001BH6CT,GQY1XT001EUX8M,GQY1XT001DDKXQ,GQY1XT001A7K6V,GQY1XT001A2B2J,GQY1XT001BP4X0,GQY1XT001B9UX1,GQY1XT001A6FPJ,GQY1XT001AWAOQ,GQY1XT001AOZGN,GQY1XT001BAZSR,GQY1XT001ENPQA,GQY1XT001BJFHM,GQY1XT001D0NNP,GQY1XT001ALJ8Y,GQY1XT001CFI2K,GQY1XT001AZFPQ,GQY1XT001C27LS,GQY1XT001B0LNH,GQY1XT001BLLRJ,GQY1XT001B4U5O,GQY1XT001CP87H,GQY1XT001DV8HQ,GQY1XT001B4OUY,GQY1XT001DYNKU,GQY1XT001DYVN2,GQY1XT001CF83J,GQY1XT001DMCAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSRO2"; +secondCol = "GQY1XT001BSRO2,GQY1XT001AKA90,GQY1XT001DSGIU,GQY1XT001BKXZO,GQY1XT001BH1YG,GQY1XT001EQ6QY,GQY1XT001CHB1H,GQY1XT001B133Q,GQY1XT001AI7MM,GQY1XT001ESCYN,GQY1XT001C9ZDT,GQY1XT001BCXVD,GQY1XT001EIJF4,GQY1XT001BKPSW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9VA2"; +secondCol = "GQY1XT001B9VA2,GQY1XT001DI6OT,GQY1XT001B8646,GQY1XT001AQYJC,GQY1XT001DZHHG,GQY1XT001DEU9K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARVHF"; +secondCol = "GQY1XT001ARVHF,GQY1XT001ALJBO,GQY1XT001DY2ZG,GQY1XT001C5NJX,GQY1XT001B5PHQ,GQY1XT001CEZ6C,GQY1XT001ARGJP,GQY1XT001CDNIX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOG78"; +secondCol = "GQY1XT001AOG78,GQY1XT001EX30Y,GQY1XT001EKTOV,GQY1XT001DUWQ1,GQY1XT001API9V,GQY1XT001DHGZB,GQY1XT001B109U,GQY1XT001CM29J,GQY1XT001APQWZ,GQY1XT001B097Z,GQY1XT001CI63T,GQY1XT001CA62K,GQY1XT001EZ1C3,GQY1XT001E2GV2,GQY1XT001DP0LA,GQY1XT001CE1ML,GQY1XT001BQABI,GQY1XT001EC072,GQY1XT001DT2IS,GQY1XT001CTOPJ,GQY1XT001CDXFR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEGP7"; +secondCol = "GQY1XT001AEGP7,GQY1XT001EO3PE,GQY1XT001AO5X4,GQY1XT001D9PCH,GQY1XT001CJWGJ,GQY1XT001B5IWB,GQY1XT001A6DYJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX0ZP"; +secondCol = "GQY1XT001EX0ZP,GQY1XT001DCMGR,GQY1XT001C3A3A,GQY1XT001BU8G0,GQY1XT001CS0Z1,GQY1XT001E5MG3,GQY1XT001DUSFE,GQY1XT001AY7S4,GQY1XT001CMGSX,GQY1XT001CAUSB,GQY1XT001AT29C,GQY1XT001CLJ6S,GQY1XT001CYKVD,GQY1XT001APKRW,GQY1XT001EF2WW,GQY1XT001CN34Q,GQY1XT001C8H95,GQY1XT001BUWFU,GQY1XT001BIYI3,GQY1XT001D7JEB,GQY1XT001CE174,GQY1XT001B7OOA,GQY1XT001EXX40,GQY1XT001EQILP,GQY1XT001B1008,GQY1XT001BGAWP,GQY1XT001ASYBF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPHS5"; +secondCol = "GQY1XT001EPHS5,GQY1XT001EOLXN,GQY1XT001DZYQS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EP1JC"; +secondCol = "GQY1XT001EP1JC,GQY1XT001CBN0M,GQY1XT001EAXW4,GQY1XT001C0XC7,GQY1XT001BJK4X,GQY1XT001A9SFA,GQY1XT001BEXT8,GQY1XT001E1EJF,GQY1XT001EHS5U,GQY1XT001D8TG2,GQY1XT001EI906,GQY1XT001EEPJX,GQY1XT001B82QP,GQY1XT001DYDTF,GQY1XT001CCY3H,GQY1XT001DN796,GQY1XT001B20ZC,GQY1XT001EKYUV,GQY1XT001EE7LC,GQY1XT001A8AK9,GQY1XT001DS3L2,GQY1XT001EXB8L,GQY1XT001ETX5U,GQY1XT001ELOQC,GQY1XT001ECZCK,GQY1XT001EZCAS,GQY1XT001BPUZA,GQY1XT001CIDZG,GQY1XT001CR903,GQY1XT001C4NHQ,GQY1XT001A79NZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHN7S"; +secondCol = "GQY1XT001EHN7S,GQY1XT001CC0VW,GQY1XT001CSNYI,GQY1XT001EVKCP,GQY1XT001CRIJ6,GQY1XT001BK0FK,GQY1XT001BXKY1,GQY1XT001AOIJB,GQY1XT001CKYW2,GQY1XT001EJ2GK,GQY1XT001D5IL9,GQY1XT001EGSLM,GQY1XT001AQC5E,GQY1XT001AHPOH,GQY1XT001B08X7,GQY1XT001CAFEM,GQY1XT001CFO6U,GQY1XT001BN9PS,GQY1XT001DSB7S,GQY1XT001B9OAX,GQY1XT001E09WV,GQY1XT001C9LG2,GQY1XT001D8AU5,GQY1XT001BSQ3G,GQY1XT001CUD9C,GQY1XT001BY6RP,GQY1XT001BES79,GQY1XT001CPQM0,GQY1XT001EH7DR,GQY1XT001BIBWA,GQY1XT001BKA3P,GQY1XT001C0N9M,GQY1XT001AF0LE,GQY1XT001A3324,GQY1XT001DWQXY,GQY1XT001DQSWK,GQY1XT001A6GYF,GQY1XT001C5QA2,GQY1XT001CZL20,GQY1XT001DAIRX,GQY1XT001AWHB6,GQY1XT001DD803,GQY1XT001BNDA3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFUZQ"; +secondCol = "GQY1XT001EFUZQ,GQY1XT001AWK9Q,GQY1XT001AREW3,GQY1XT001B6RTN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDYY1"; +secondCol = "GQY1XT001EDYY1,GQY1XT001ES6JZ,GQY1XT001DGW60,GQY1XT001A8H8U,GQY1XT001BYKRD,GQY1XT001BF79D,GQY1XT001CICAJ,GQY1XT001BG3LZ,GQY1XT001DSXE6,GQY1XT001APBXW,GQY1XT001BCNWH,GQY1XT001BR1UE,GQY1XT001C2A31,GQY1XT001DQUKQ,GQY1XT001DDE9Q,GQY1XT001EAQ9T,GQY1XT001BPGAJ,GQY1XT001COTXK,GQY1XT001B9JL9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECG24"; +secondCol = "GQY1XT001ECG24,GQY1XT001DZVCU,GQY1XT001BCI0R,GQY1XT001A6IK6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EB301"; +secondCol = "GQY1XT001EB301,GQY1XT001BOB9M,GQY1XT001BCGW9,GQY1XT001ATFNJ,GQY1XT001DOAX3,GQY1XT001C4UUS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQWXH"; +secondCol = "GQY1XT001DQWXH,GQY1XT001DD26I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOMXB"; +secondCol = "GQY1XT001DOMXB,GQY1XT001ANI6N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGEAP"; +secondCol = "GQY1XT001DGEAP,GQY1XT001EMN1P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYFOT"; +secondCol = "GQY1XT001CYFOT,GQY1XT001CRNL0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYCIB"; +secondCol = "GQY1XT001CYCIB,GQY1XT001C2I8D,GQY1XT001BG6E6,GQY1XT001D0CF9,GQY1XT001C1H0L,GQY1XT001DNLW7,GQY1XT001DKDNB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXUJD"; +secondCol = "GQY1XT001CXUJD,GQY1XT001DECPO,GQY1XT001E0XMC,GQY1XT001BCVGJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXMNA"; +secondCol = "GQY1XT001CXMNA,GQY1XT001C1QHW,GQY1XT001B58EJ,GQY1XT001AWSJ5,GQY1XT001EDVIZ,GQY1XT001BZA6F,GQY1XT001B350O,GQY1XT001BY8U5,GQY1XT001BU4ZL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW602"; +secondCol = "GQY1XT001CW602,GQY1XT001BCIF4,GQY1XT001C6JO3,GQY1XT001BR0SP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVQSF"; +secondCol = "GQY1XT001CVQSF,GQY1XT001EEJC8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMS04"; +secondCol = "GQY1XT001CMS04,GQY1XT001BQLM3,GQY1XT001CPMDS,GQY1XT001B21I5,GQY1XT001B2ALA,GQY1XT001E0P8E,GQY1XT001DN0K8,GQY1XT001CRI3N,GQY1XT001DINHV,GQY1XT001AQ846,GQY1XT001A8YXA,GQY1XT001CNMIN,GQY1XT001C7IFB,GQY1XT001D8U9T,GQY1XT001CYTID,GQY1XT001BDYX8,GQY1XT001CJV33,GQY1XT001CP3WK,GQY1XT001CA5Q7,GQY1XT001AFYGK,GQY1XT001B97Y1,GQY1XT001EJOEY,GQY1XT001E0YJB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIFR7"; +secondCol = "GQY1XT001CIFR7,GQY1XT001D5SSO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHEOP"; +secondCol = "GQY1XT001CHEOP,GQY1XT001AK3MK,GQY1XT001D9UET,GQY1XT001DVQCP,GQY1XT001ATEWB,GQY1XT001DH2CB,GQY1XT001ER2SL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUH2B"; +secondCol = "GQY1XT001BUH2B,GQY1XT001DCT0C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTJY0"; +secondCol = "GQY1XT001BTJY0,GQY1XT001ERMYR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPBAW"; +secondCol = "GQY1XT001BPBAW,GQY1XT001BQ869,GQY1XT001C8W19,GQY1XT001C60L0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGSX9"; +secondCol = "GQY1XT001BGSX9,GQY1XT001ECRLE,GQY1XT001CXW7E,GQY1XT001E4KXA,GQY1XT001ATYYL,GQY1XT001EF94R,GQY1XT001ESDX4,GQY1XT001AR65H,GQY1XT001AFH8Z,GQY1XT001B7FHX,GQY1XT001AGH26,GQY1XT001D4D33,GQY1XT001B85TS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGF0U"; +secondCol = "GQY1XT001BGF0U,GQY1XT001BJQ1X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDDJJ"; +secondCol = "GQY1XT001BDDJJ,GQY1XT001EVYU1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC7OS"; +secondCol = "GQY1XT001BC7OS,GQY1XT001EASAL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0P0B"; +secondCol = "GQY1XT001B0P0B,GQY1XT001BFIMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ42D"; +secondCol = "GQY1XT001AZ42D,GQY1XT001EYFXZ,GQY1XT001D6UIK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKTCW"; +secondCol = "GQY1XT001AKTCW,GQY1XT001DMVUJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0V8W"; +secondCol = "GQY1XT001A0V8W,GQY1XT001C35HL,GQY1XT001C37PY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A058D"; +secondCol = "GQY1XT001A058D,GQY1XT001DN36E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZCXH"; +secondCol = "GQY1XT001EZCXH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZ8GE"; +secondCol = "GQY1XT001EZ8GE,GQY1XT001ASKYU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYYS5"; +secondCol = "GQY1XT001EYYS5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYPAX"; +secondCol = "GQY1XT001EYPAX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYIV1"; +secondCol = "GQY1XT001EYIV1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXIVG"; +secondCol = "GQY1XT001EXIVG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXEU5"; +secondCol = "GQY1XT001EXEU5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXAZ7"; +secondCol = "GQY1XT001EXAZ7,GQY1XT001DDTJY,GQY1XT001AKVRT,GQY1XT001BS4EF,GQY1XT001DCJWF,GQY1XT001CMENL,GQY1XT001AEVAN,GQY1XT001CGTJA,GQY1XT001A2JS3,GQY1XT001AWM5F,GQY1XT001APU7W,GQY1XT001EK8R7,GQY1XT001C5X5T,GQY1XT001BR585,GQY1XT001BRX5Q,GQY1XT001APL9U,GQY1XT001AHKSY,GQY1XT001A92CD,GQY1XT001A5ELS,GQY1XT001EKR58,GQY1XT001DW0OQ,GQY1XT001EJPTG,GQY1XT001B90IL,GQY1XT001DBUVX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWK0A"; +secondCol = "GQY1XT001EWK0A,GQY1XT001DUJTL,GQY1XT001DRW98,GQY1XT001EHVXH,GQY1XT001B7SNL,GQY1XT001CWBLI,GQY1XT001A3WXB,GQY1XT001DCCB1,GQY1XT001DDX5C,GQY1XT001BX7UA,GQY1XT001EWVIS,GQY1XT001EUBAQ,GQY1XT001COXK7,GQY1XT001D4FTX,GQY1XT001DYWMV,GQY1XT001E1BZD,GQY1XT001DQAVX,GQY1XT001C9NAW,GQY1XT001BOPPY,GQY1XT001BIF5H,GQY1XT001AW2ZQ,GQY1XT001ARZGE,GQY1XT001D61XS,GQY1XT001ERTGK,GQY1XT001DWSLD,GQY1XT001D7UJD,GQY1XT001DNZVI,GQY1XT001DKZWB,GQY1XT001C75ZA,GQY1XT001D4TSW,GQY1XT001EQGRX,GQY1XT001AX7QB,GQY1XT001ALW8S,GQY1XT001A7ZI5,GQY1XT001BQBZL,GQY1XT001AZZGW,GQY1XT001D1BSJ,GQY1XT001B8FC3,GQY1XT001ELXOQ,GQY1XT001BKO0L,GQY1XT001BCSWN,GQY1XT001CMWGH,GQY1XT001A669D,GQY1XT001A2JRC,GQY1XT001CWFLS,GQY1XT001CK9IM,GQY1XT001EVJGM,GQY1XT001DCYHS,GQY1XT001AL6I8,GQY1XT001C7R2V,GQY1XT001EPP96,GQY1XT001EKRRE,GQY1XT001EXKUT,GQY1XT001DKE2B,GQY1XT001DH51S,GQY1XT001D69K4,GQY1XT001D452W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EW7MF"; +secondCol = "GQY1XT001EW7MF,GQY1XT001BYLW1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EW2K2"; +secondCol = "GQY1XT001EW2K2,GQY1XT001B6ZBO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVP92"; +secondCol = "GQY1XT001EVP92,GQY1XT001BYJIG,GQY1XT001EDTPE,GQY1XT001BEI6R,GQY1XT001DPA05,GQY1XT001CS2JR,GQY1XT001EC39U,GQY1XT001BJME1,GQY1XT001BN57L,GQY1XT001AV9F9,GQY1XT001BJELX,GQY1XT001EZEID,GQY1XT001EXAQC,GQY1XT001C32BR,GQY1XT001BTT3U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVHL0"; +secondCol = "GQY1XT001EVHL0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EV8AL"; +secondCol = "GQY1XT001EV8AL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EV1R0"; +secondCol = "GQY1XT001EV1R0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EURY9"; +secondCol = "GQY1XT001EURY9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUIOC"; +secondCol = "GQY1XT001EUIOC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU9X6"; +secondCol = "GQY1XT001EU9X6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETFKQ"; +secondCol = "GQY1XT001ETFKQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETF05"; +secondCol = "GQY1XT001ETF05"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETDKY"; +secondCol = "GQY1XT001ETDKY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ET5SK"; +secondCol = "GQY1XT001ET5SK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQWOD"; +secondCol = "GQY1XT001EQWOD,GQY1XT001CVABT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQIV5"; +secondCol = "GQY1XT001EQIV5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPE74"; +secondCol = "GQY1XT001EPE74,GQY1XT001AGWJG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EP30T"; +secondCol = "GQY1XT001EP30T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENZ1M"; +secondCol = "GQY1XT001ENZ1M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENH1J"; +secondCol = "GQY1XT001ENH1J,GQY1XT001CUQY4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMKVP"; +secondCol = "GQY1XT001EMKVP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMC11"; +secondCol = "GQY1XT001EMC11"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMATT"; +secondCol = "GQY1XT001EMATT,GQY1XT001EBTQ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMAQQ"; +secondCol = "GQY1XT001EMAQQ,GQY1XT001C1AT3,GQY1XT001AR5A9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM827"; +secondCol = "GQY1XT001EM827"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM7A3"; +secondCol = "GQY1XT001EM7A3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM6RV"; +secondCol = "GQY1XT001EM6RV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELZVI"; +secondCol = "GQY1XT001ELZVI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKQHH"; +secondCol = "GQY1XT001EKQHH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKMAO"; +secondCol = "GQY1XT001EKMAO,GQY1XT001CIK6J,GQY1XT001CTGWG,GQY1XT001BITW8,GQY1XT001DB6MX,GQY1XT001DA4RH,GQY1XT001C5SNO,GQY1XT001BLP13"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKHHJ"; +secondCol = "GQY1XT001EKHHJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJU1D"; +secondCol = "GQY1XT001EJU1D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ2FF"; +secondCol = "GQY1XT001EJ2FF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHO81"; +secondCol = "GQY1XT001EHO81"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGVLY"; +secondCol = "GQY1XT001EGVLY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGSME"; +secondCol = "GQY1XT001EGSME,GQY1XT001C6RZ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGAZT"; +secondCol = "GQY1XT001EGAZT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEXO8"; +secondCol = "GQY1XT001EEXO8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EENTR"; +secondCol = "GQY1XT001EENTR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEIYW"; +secondCol = "GQY1XT001EEIYW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDTAQ"; +secondCol = "GQY1XT001EDTAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECTBL"; +secondCol = "GQY1XT001ECTBL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECQ1R"; +secondCol = "GQY1XT001ECQ1R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA3NI"; +secondCol = "GQY1XT001EA3NI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E3JUH"; +secondCol = "GQY1XT001E3JUH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E2UEG"; +secondCol = "GQY1XT001E2UEG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E10W9"; +secondCol = "GQY1XT001E10W9,GQY1XT001CZMRK,GQY1XT001ECR7H,GQY1XT001D1IXC,GQY1XT001EINUF,GQY1XT001EDC64,GQY1XT001CGBIX,GQY1XT001E1XOU,GQY1XT001B02XG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0KPB"; +secondCol = "GQY1XT001E0KPB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0777"; +secondCol = "GQY1XT001E0777"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E02IL"; +secondCol = "GQY1XT001E02IL,GQY1XT001CMMY0,GQY1XT001ELYOW,GQY1XT001DYU95,GQY1XT001D9R3A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZXJA"; +secondCol = "GQY1XT001DZXJA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZJKO"; +secondCol = "GQY1XT001DZJKO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYOCU"; +secondCol = "GQY1XT001DYOCU,GQY1XT001ECPCN,GQY1XT001AP1DP,GQY1XT001BQK66,GQY1XT001A7JDP,GQY1XT001DZI7E,GQY1XT001EQC87,GQY1XT001B1JTV,GQY1XT001CXQ4N,GQY1XT001ENAWS,GQY1XT001DC901,GQY1XT001DW2KZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYGKE"; +secondCol = "GQY1XT001DYGKE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXUGT"; +secondCol = "GQY1XT001DXUGT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX0D5"; +secondCol = "GQY1XT001DX0D5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX0CQ"; +secondCol = "GQY1XT001DX0CQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWG63"; +secondCol = "GQY1XT001DWG63,GQY1XT001DG1L6,GQY1XT001C6CQK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW6TO"; +secondCol = "GQY1XT001DW6TO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVLUO"; +secondCol = "GQY1XT001DVLUO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUDVJ"; +secondCol = "GQY1XT001DUDVJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DT2OI"; +secondCol = "GQY1XT001DT2OI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSPP3"; +secondCol = "GQY1XT001DSPP3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSLZ5"; +secondCol = "GQY1XT001DSLZ5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSCYV"; +secondCol = "GQY1XT001DSCYV,GQY1XT001BW9BK,GQY1XT001DSNHY,GQY1XT001B1795,GQY1XT001A7N6N,GQY1XT001BLE5B,GQY1XT001EP4D4,GQY1XT001A98RT,GQY1XT001D4NON"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRNKQ"; +secondCol = "GQY1XT001DRNKQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRMG3"; +secondCol = "GQY1XT001DRMG3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ4UV"; +secondCol = "GQY1XT001DQ4UV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPYJ6"; +secondCol = "GQY1XT001DPYJ6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOJ3N"; +secondCol = "GQY1XT001DOJ3N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN337"; +secondCol = "GQY1XT001DN337"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN193"; +secondCol = "GQY1XT001DN193,GQY1XT001BZ5BA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMV4N"; +secondCol = "GQY1XT001DMV4N,GQY1XT001BDSTZ,GQY1XT001COITB,GQY1XT001DWHN5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DM54B"; +secondCol = "GQY1XT001DM54B,GQY1XT001AZU9N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLXQL"; +secondCol = "GQY1XT001DLXQL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLSU0"; +secondCol = "GQY1XT001DLSU0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL380"; +secondCol = "GQY1XT001DL380"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKSU0"; +secondCol = "GQY1XT001DKSU0,GQY1XT001CODSM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKKIC"; +secondCol = "GQY1XT001DKKIC,GQY1XT001D8J8L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKIM9"; +secondCol = "GQY1XT001DKIM9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DK8XV"; +secondCol = "GQY1XT001DK8XV,GQY1XT001D4U8A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJFPN"; +secondCol = "GQY1XT001DJFPN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJ8OY"; +secondCol = "GQY1XT001DJ8OY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIGSI"; +secondCol = "GQY1XT001DIGSI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH9T4"; +secondCol = "GQY1XT001DH9T4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH5LL"; +secondCol = "GQY1XT001DH5LL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGUTC"; +secondCol = "GQY1XT001DGUTC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGUJB"; +secondCol = "GQY1XT001DGUJB,GQY1XT001EEWDZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGLDS"; +secondCol = "GQY1XT001DGLDS,GQY1XT001EVF3N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGLC1"; +secondCol = "GQY1XT001DGLC1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGL64"; +secondCol = "GQY1XT001DGL64"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DG1MD"; +secondCol = "GQY1XT001DG1MD,GQY1XT001AYVDM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEX8G"; +secondCol = "GQY1XT001DEX8G,GQY1XT001BHKML"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DET7J"; +secondCol = "GQY1XT001DET7J,GQY1XT001AXM89,GQY1XT001DL0P0,GQY1XT001DNWIU,GQY1XT001D8KZ0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDWCI"; +secondCol = "GQY1XT001DDWCI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDLUW"; +secondCol = "GQY1XT001DDLUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDAN0"; +secondCol = "GQY1XT001DDAN0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCR8A"; +secondCol = "GQY1XT001DCR8A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCR44"; +secondCol = "GQY1XT001DCR44,GQY1XT001AOGR5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBLBC"; +secondCol = "GQY1XT001DBLBC,GQY1XT001BZC1G,GQY1XT001CS1LB,GQY1XT001B5R82,GQY1XT001DHO9E,GQY1XT001C6P1N,GQY1XT001APLP4,GQY1XT001CDXHR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DB2I6"; +secondCol = "GQY1XT001DB2I6,GQY1XT001EYYTM,GQY1XT001DJJYT,GQY1XT001CNL0X,GQY1XT001C1XNK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DABCU"; +secondCol = "GQY1XT001DABCU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9Y8F"; +secondCol = "GQY1XT001D9Y8F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7Y5M"; +secondCol = "GQY1XT001D7Y5M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7XCR"; +secondCol = "GQY1XT001D7XCR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7GRK"; +secondCol = "GQY1XT001D7GRK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D63XM"; +secondCol = "GQY1XT001D63XM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D50JU"; +secondCol = "GQY1XT001D50JU,GQY1XT001E0APX,GQY1XT001DKI4V,GQY1XT001C26FB,GQY1XT001D4DHF,GQY1XT001BZK5Z,GQY1XT001EFR1L,GQY1XT001AHIUR,GQY1XT001CE1TD,GQY1XT001A4BPB,GQY1XT001A2KN3,GQY1XT001ANN56,GQY1XT001BNQQF,GQY1XT001EB44D,GQY1XT001B9GBV,GQY1XT001A8MQI,GQY1XT001EHWHO,GQY1XT001DPC3S,GQY1XT001ESLCS,GQY1XT001CLN6Q,GQY1XT001EE5IG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4JG2"; +secondCol = "GQY1XT001D4JG2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4C8Y"; +secondCol = "GQY1XT001D4C8Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D37QE"; +secondCol = "GQY1XT001D37QE,GQY1XT001C8N2C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D26Z9"; +secondCol = "GQY1XT001D26Z9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D17ZG"; +secondCol = "GQY1XT001D17ZG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0ZS2"; +secondCol = "GQY1XT001D0ZS2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0XR5"; +secondCol = "GQY1XT001D0XR5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZEGP"; +secondCol = "GQY1XT001CZEGP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYRVV"; +secondCol = "GQY1XT001CYRVV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYQ63"; +secondCol = "GQY1XT001CYQ63"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXKEA"; +secondCol = "GQY1XT001CXKEA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX3Z9"; +secondCol = "GQY1XT001CX3Z9,GQY1XT001CI3XL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWSQ6"; +secondCol = "GQY1XT001CWSQ6,GQY1XT001AEMPO,GQY1XT001EF2EL,GQY1XT001DJ9SD,GQY1XT001DL5UG,GQY1XT001DNJLQ,GQY1XT001A6YYK,GQY1XT001CQHSX,GQY1XT001CHSCH,GQY1XT001BAUH5,GQY1XT001A0KP0,GQY1XT001EPRQT,GQY1XT001DUTPW,GQY1XT001BTXBC,GQY1XT001CTI24,GQY1XT001A5AYH,GQY1XT001DJ2UX,GQY1XT001E0PBG,GQY1XT001DQ3SG,GQY1XT001D3114,GQY1XT001CMQEN,GQY1XT001CHR2S,GQY1XT001CRE79,GQY1XT001A5HMQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWP9L"; +secondCol = "GQY1XT001CWP9L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWL08"; +secondCol = "GQY1XT001CWL08"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW00N"; +secondCol = "GQY1XT001CW00N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVAAI"; +secondCol = "GQY1XT001CVAAI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU0DC"; +secondCol = "GQY1XT001CU0DC,GQY1XT001B1N7R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU014"; +secondCol = "GQY1XT001CU014"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTH8F"; +secondCol = "GQY1XT001CTH8F,GQY1XT001CBTBB,GQY1XT001CZ6FR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CT7MI"; +secondCol = "GQY1XT001CT7MI,GQY1XT001A7HQB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CT48N"; +secondCol = "GQY1XT001CT48N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSO5P"; +secondCol = "GQY1XT001CSO5P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS3JZ"; +secondCol = "GQY1XT001CS3JZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CREXW"; +secondCol = "GQY1XT001CREXW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQMXT"; +secondCol = "GQY1XT001CQMXT,GQY1XT001BNK1M,GQY1XT001BAAOW,GQY1XT001DJCMS,GQY1XT001CWVY5,GQY1XT001C2Y5P,GQY1XT001A2TUB,GQY1XT001C5BNE,GQY1XT001C55AR,GQY1XT001DCZGO,GQY1XT001B4GD1,GQY1XT001C07VS,GQY1XT001EFJ7L,GQY1XT001DHR2X,GQY1XT001AUN8Z,GQY1XT001EUPEW,GQY1XT001CSRWY,GQY1XT001BWDX2,GQY1XT001EJ5HW,GQY1XT001B1U6N,GQY1XT001BFHEB,GQY1XT001EZM6Z,GQY1XT001CKL5O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQJTC"; +secondCol = "GQY1XT001CQJTC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPDJX"; +secondCol = "GQY1XT001CPDJX,GQY1XT001CMPZY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COZPO"; +secondCol = "GQY1XT001COZPO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COXEE"; +secondCol = "GQY1XT001COXEE,GQY1XT001CL7B2,GQY1XT001BE5F9,GQY1XT001BNZX8,GQY1XT001BK3MI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CON9S"; +secondCol = "GQY1XT001CON9S,GQY1XT001EI8SG,GQY1XT001AZOM6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNX9I"; +secondCol = "GQY1XT001CNX9I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNBJ0"; +secondCol = "GQY1XT001CNBJ0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLKQS"; +secondCol = "GQY1XT001CLKQS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKMKE"; +secondCol = "GQY1XT001CKMKE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CK4HA"; +secondCol = "GQY1XT001CK4HA,GQY1XT001AD6B0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ4OA"; +secondCol = "GQY1XT001CJ4OA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ4BB"; +secondCol = "GQY1XT001CJ4BB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIWFS"; +secondCol = "GQY1XT001CIWFS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIELQ"; +secondCol = "GQY1XT001CIELQ,GQY1XT001BC02G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHZHN"; +secondCol = "GQY1XT001CHZHN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH6TQ"; +secondCol = "GQY1XT001CH6TQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGX5Q"; +secondCol = "GQY1XT001CGX5Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGU9N"; +secondCol = "GQY1XT001CGU9N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGNFH"; +secondCol = "GQY1XT001CGNFH,GQY1XT001C8W56,GQY1XT001CH5JM,GQY1XT001COBFF,GQY1XT001CRO35,GQY1XT001C1ZTO,GQY1XT001DIH2I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFHVA"; +secondCol = "GQY1XT001CFHVA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEW6A"; +secondCol = "GQY1XT001CEW6A,GQY1XT001D7JJW,GQY1XT001EORON,GQY1XT001CI93M,GQY1XT001BI8DC,GQY1XT001DS8FK,GQY1XT001A5IVN,GQY1XT001E5SD0,GQY1XT001A5X0T,GQY1XT001A36W2,GQY1XT001CM9R2,GQY1XT001BFXBC,GQY1XT001EWKCN,GQY1XT001EB094,GQY1XT001DG1XK,GQY1XT001BDDVL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CETAI"; +secondCol = "GQY1XT001CETAI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDZ21"; +secondCol = "GQY1XT001CDZ21"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCZ3D"; +secondCol = "GQY1XT001CCZ3D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCX22"; +secondCol = "GQY1XT001CCX22"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCMSC"; +secondCol = "GQY1XT001CCMSC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCDO5"; +secondCol = "GQY1XT001CCDO5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CC4MW"; +secondCol = "GQY1XT001CC4MW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBZH8"; +secondCol = "GQY1XT001CBZH8,GQY1XT001C2Q3X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBQMW"; +secondCol = "GQY1XT001CBQMW,GQY1XT001C7VPL,GQY1XT001BPF7Q,GQY1XT001DVCIT,GQY1XT001DYDQS,GQY1XT001BAKMG,GQY1XT001EKWXZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9VTR"; +secondCol = "GQY1XT001C9VTR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9PNP"; +secondCol = "GQY1XT001C9PNP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9D54"; +secondCol = "GQY1XT001C9D54"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C94DS"; +secondCol = "GQY1XT001C94DS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8DG5"; +secondCol = "GQY1XT001C8DG5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C87G9"; +secondCol = "GQY1XT001C87G9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C85TH"; +secondCol = "GQY1XT001C85TH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7K6X"; +secondCol = "GQY1XT001C7K6X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5X81"; +secondCol = "GQY1XT001C5X81"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5RKW"; +secondCol = "GQY1XT001C5RKW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5R30"; +secondCol = "GQY1XT001C5R30"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5OQA"; +secondCol = "GQY1XT001C5OQA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5OF6"; +secondCol = "GQY1XT001C5OF6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5JUW"; +secondCol = "GQY1XT001C5JUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5GUL"; +secondCol = "GQY1XT001C5GUL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C59AH"; +secondCol = "GQY1XT001C59AH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3K31"; +secondCol = "GQY1XT001C3K31,GQY1XT001CIENU,GQY1XT001CH4LF,GQY1XT001CMUX8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3J66"; +secondCol = "GQY1XT001C3J66"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2HG4"; +secondCol = "GQY1XT001C2HG4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2GSX"; +secondCol = "GQY1XT001C2GSX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1ZEV"; +secondCol = "GQY1XT001C1ZEV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1QWT"; +secondCol = "GQY1XT001C1QWT,GQY1XT001BMFPB,GQY1XT001AU035,GQY1XT001ASTUW,GQY1XT001E1X00,GQY1XT001AG9EN,GQY1XT001DH0U6,GQY1XT001CLH4Z,GQY1XT001CIMTD,GQY1XT001E07VE,GQY1XT001BK1AK,GQY1XT001C3H3U,GQY1XT001DSQN9,GQY1XT001BRXMY,GQY1XT001AIE1W,GQY1XT001AGHVA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C136W"; +secondCol = "GQY1XT001C136W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0R97"; +secondCol = "GQY1XT001C0R97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0JOK"; +secondCol = "GQY1XT001C0JOK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C09ZC"; +secondCol = "GQY1XT001C09ZC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C07XU"; +secondCol = "GQY1XT001C07XU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZ1JQ"; +secondCol = "GQY1XT001BZ1JQ,GQY1XT001BWCLW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXU25"; +secondCol = "GQY1XT001BXU25"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXOYU"; +secondCol = "GQY1XT001BXOYU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWXPR"; +secondCol = "GQY1XT001BWXPR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWNL7"; +secondCol = "GQY1XT001BWNL7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV5DU"; +secondCol = "GQY1XT001BV5DU,GQY1XT001A7IHX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTPWD"; +secondCol = "GQY1XT001BTPWD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSM39"; +secondCol = "GQY1XT001BSM39"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSIYP"; +secondCol = "GQY1XT001BSIYP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BR1RG"; +secondCol = "GQY1XT001BR1RG,GQY1XT001BJMRN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQOC4"; +secondCol = "GQY1XT001BQOC4,GQY1XT001CDF2M,GQY1XT001CXMSU,GQY1XT001C473M,GQY1XT001DX6S1,GQY1XT001BYYPR,GQY1XT001DFJDU,GQY1XT001CO6I9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ6PL"; +secondCol = "GQY1XT001BQ6PL,GQY1XT001BLGDF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ5P4"; +secondCol = "GQY1XT001BQ5P4,GQY1XT001BPUOQ,GQY1XT001AZQ92,GQY1XT001AV30J,GQY1XT001CBPIQ,GQY1XT001EKLTO,GQY1XT001BZ3S4,GQY1XT001ANL2O,GQY1XT001CGCU4,GQY1XT001EMPSH,GQY1XT001D0D4S,GQY1XT001AFBUU,GQY1XT001D8A11,GQY1XT001BZ20U,GQY1XT001CAM9S,GQY1XT001ECP4V,GQY1XT001AK837,GQY1XT001B0B3W,GQY1XT001B89EI,GQY1XT001AXN40,GQY1XT001ESW1A,GQY1XT001COXXF,GQY1XT001BAKMY,GQY1XT001C9JRD,GQY1XT001D1F3U,GQY1XT001B68NY,GQY1XT001BH082,GQY1XT001A0OMQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPLGT"; +secondCol = "GQY1XT001BPLGT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPJSB"; +secondCol = "GQY1XT001BPJSB,GQY1XT001DVDNN,GQY1XT001EMLV9,GQY1XT001CLYZB,GQY1XT001BSKQ3,GQY1XT001AX1FR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BORQD"; +secondCol = "GQY1XT001BORQD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BODJS"; +secondCol = "GQY1XT001BODJS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BODBA"; +secondCol = "GQY1XT001BODBA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOBWZ"; +secondCol = "GQY1XT001BOBWZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNP5A"; +secondCol = "GQY1XT001BNP5A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLW7T"; +secondCol = "GQY1XT001BLW7T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLL0X"; +secondCol = "GQY1XT001BLL0X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLGDV"; +secondCol = "GQY1XT001BLGDV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLF40"; +secondCol = "GQY1XT001BLF40"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLEJH"; +secondCol = "GQY1XT001BLEJH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKFDJ"; +secondCol = "GQY1XT001BKFDJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJGWI"; +secondCol = "GQY1XT001BJGWI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIZXC"; +secondCol = "GQY1XT001BIZXC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIRIE"; +secondCol = "GQY1XT001BIRIE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIC49"; +secondCol = "GQY1XT001BIC49"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI4NP"; +secondCol = "GQY1XT001BI4NP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHX1B"; +secondCol = "GQY1XT001BHX1B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHSU0"; +secondCol = "GQY1XT001BHSU0,GQY1XT001DRGD7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH3PR"; +secondCol = "GQY1XT001BH3PR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGZRP"; +secondCol = "GQY1XT001BGZRP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGXQP"; +secondCol = "GQY1XT001BGXQP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFXWS"; +secondCol = "GQY1XT001BFXWS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFWOA"; +secondCol = "GQY1XT001BFWOA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF5QA"; +secondCol = "GQY1XT001BF5QA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDRKB"; +secondCol = "GQY1XT001BDRKB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCL2I"; +secondCol = "GQY1XT001BCL2I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCCY2"; +secondCol = "GQY1XT001BCCY2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC5ZU"; +secondCol = "GQY1XT001BC5ZU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBVJO"; +secondCol = "GQY1XT001BBVJO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBFG5"; +secondCol = "GQY1XT001BBFG5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAG3V"; +secondCol = "GQY1XT001BAG3V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9TIV"; +secondCol = "GQY1XT001B9TIV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9I8C"; +secondCol = "GQY1XT001B9I8C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9GME"; +secondCol = "GQY1XT001B9GME"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7GQG"; +secondCol = "GQY1XT001B7GQG,GQY1XT001DH0YX,GQY1XT001AR9SI,GQY1XT001A6ZFT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6YL8"; +secondCol = "GQY1XT001B6YL8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6W23"; +secondCol = "GQY1XT001B6W23"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6E9B"; +secondCol = "GQY1XT001B6E9B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5BKI"; +secondCol = "GQY1XT001B5BKI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4UWB"; +secondCol = "GQY1XT001B4UWB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4M8E"; +secondCol = "GQY1XT001B4M8E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4J0M"; +secondCol = "GQY1XT001B4J0M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4H50"; +secondCol = "GQY1XT001B4H50"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3PMW"; +secondCol = "GQY1XT001B3PMW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B32FR"; +secondCol = "GQY1XT001B32FR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2GF9"; +secondCol = "GQY1XT001B2GF9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZX5J"; +secondCol = "GQY1XT001AZX5J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZW3I"; +secondCol = "GQY1XT001AZW3I,GQY1XT001CG9KS,GQY1XT001BIH0K,GQY1XT001A51K2,GQY1XT001BY8JJ,GQY1XT001C9CXP,GQY1XT001CZXUC,GQY1XT001EQNYE,GQY1XT001EPYNT,GQY1XT001BZMIG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ0Q5"; +secondCol = "GQY1XT001AZ0Q5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYX5B"; +secondCol = "GQY1XT001AYX5B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXGVN"; +secondCol = "GQY1XT001AXGVN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXFH3"; +secondCol = "GQY1XT001AXFH3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWXTO"; +secondCol = "GQY1XT001AWXTO,GQY1XT001DM9O2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWQD2"; +secondCol = "GQY1XT001AWQD2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWCF3"; +secondCol = "GQY1XT001AWCF3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW9VM"; +secondCol = "GQY1XT001AW9VM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVNVM"; +secondCol = "GQY1XT001AVNVM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV50O"; +secondCol = "GQY1XT001AV50O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV0AG"; +secondCol = "GQY1XT001AV0AG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUH91"; +secondCol = "GQY1XT001AUH91"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUEHA"; +secondCol = "GQY1XT001AUEHA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASTYP"; +secondCol = "GQY1XT001ASTYP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AS6OS"; +secondCol = "GQY1XT001AS6OS,GQY1XT001A9TKX,GQY1XT001A1Q19,GQY1XT001EPYEM,GQY1XT001CLNA1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARMXF"; +secondCol = "GQY1XT001ARMXF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQXRW"; +secondCol = "GQY1XT001AQXRW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQWB0"; +secondCol = "GQY1XT001AQWB0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQSSN"; +secondCol = "GQY1XT001AQSSN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQKX4"; +secondCol = "GQY1XT001AQKX4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQ61I"; +secondCol = "GQY1XT001AQ61I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOO50"; +secondCol = "GQY1XT001AOO50"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANP6T"; +secondCol = "GQY1XT001ANP6T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANOK9"; +secondCol = "GQY1XT001ANOK9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMRUB"; +secondCol = "GQY1XT001AMRUB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALJLO"; +secondCol = "GQY1XT001ALJLO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ2QW"; +secondCol = "GQY1XT001AJ2QW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHUSC"; +secondCol = "GQY1XT001AHUSC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHUAL"; +secondCol = "GQY1XT001AHUAL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGOD0"; +secondCol = "GQY1XT001AGOD0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG9L4"; +secondCol = "GQY1XT001AG9L4,GQY1XT001DNS62,GQY1XT001EBV71,GQY1XT001BAB36"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF8KT"; +secondCol = "GQY1XT001AF8KT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF4C6"; +secondCol = "GQY1XT001AF4C6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEZPI"; +secondCol = "GQY1XT001AEZPI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEYWL"; +secondCol = "GQY1XT001AEYWL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9O5F"; +secondCol = "GQY1XT001A9O5F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9M51"; +secondCol = "GQY1XT001A9M51"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9L9E"; +secondCol = "GQY1XT001A9L9E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9ETE"; +secondCol = "GQY1XT001A9ETE,GQY1XT001CN60U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A95IK"; +secondCol = "GQY1XT001A95IK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A913G"; +secondCol = "GQY1XT001A913G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8KO0"; +secondCol = "GQY1XT001A8KO0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A84F0"; +secondCol = "GQY1XT001A84F0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7RP1"; +secondCol = "GQY1XT001A7RP1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7CBN"; +secondCol = "GQY1XT001A7CBN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A79DG"; +secondCol = "GQY1XT001A79DG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6ZCJ"; +secondCol = "GQY1XT001A6ZCJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6TCB"; +secondCol = "GQY1XT001A6TCB,GQY1XT001BX8RH,GQY1XT001B0G3L,GQY1XT001B5Q0H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6PVD"; +secondCol = "GQY1XT001A6PVD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5XMR"; +secondCol = "GQY1XT001A5XMR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5HB1"; +secondCol = "GQY1XT001A5HB1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4YSE"; +secondCol = "GQY1XT001A4YSE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4NL2"; +secondCol = "GQY1XT001A4NL2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3MZI"; +secondCol = "GQY1XT001A3MZI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3K6U"; +secondCol = "GQY1XT001A3K6U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3DE2"; +secondCol = "GQY1XT001A3DE2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3B9P"; +secondCol = "GQY1XT001A3B9P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3680"; +secondCol = "GQY1XT001A3680"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2FJ5"; +secondCol = "GQY1XT001A2FJ5,GQY1XT001EQK26,GQY1XT001DEBTZ,GQY1XT001CXXC5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2E5Q"; +secondCol = "GQY1XT001A2E5Q,GQY1XT001A7UKH,GQY1XT001CK3YU,GQY1XT001CQUA5,GQY1XT001AYETA,GQY1XT001D2FKE,GQY1XT001DQDTV,GQY1XT001A7MGU,GQY1XT001EAVIA,GQY1XT001AIPHE,GQY1XT001C2B3I,GQY1XT001EOC32,GQY1XT001DWK40,GQY1XT001DHQZQ,GQY1XT001AUT23,GQY1XT001EJMK6,GQY1XT001AJCS3,GQY1XT001CILNE,GQY1XT001A8E5K,GQY1XT001CLGIY,GQY1XT001EJCSK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1NGX"; +secondCol = "GQY1XT001A1NGX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0Y0K"; +secondCol = "GQY1XT001A0Y0K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8WLX"; +secondCol = "GQY1XT001C8WLX,GQY1XT001EPUYV,GQY1XT001CZ6C1,GQY1XT001CZ7RS,GQY1XT001DA27O,GQY1XT001AV2V7,GQY1XT001A2BI4,GQY1XT001CWMWX,GQY1XT001A37TF,GQY1XT001D7Q4W,GQY1XT001ALVQF,GQY1XT001DCV0M,GQY1XT001E461T,GQY1XT001BULTJ,GQY1XT001DMVC3,GQY1XT001CJFAA,GQY1XT001C2FDM,GQY1XT001BY1EW,GQY1XT001BBWJZ,GQY1XT001B2XYO,GQY1XT001D2MDV,GQY1XT001EXBQ2,GQY1XT001C4GF7,GQY1XT001BHOYO,GQY1XT001BDZZD,GQY1XT001BTBBZ,GQY1XT001A0J9I,GQY1XT001C2KND,GQY1XT001AGGF3,GQY1XT001CYZMH,GQY1XT001BEPE6,GQY1XT001DL4PP,GQY1XT001DWAUM,GQY1XT001A2ILS,GQY1XT001BJPKJ,GQY1XT001DR4ZA,GQY1XT001B58VK,GQY1XT001AHLVR,GQY1XT001AI1AF,GQY1XT001EZWUZ,GQY1XT001D35D3,GQY1XT001E1EN2,GQY1XT001DK1AF,GQY1XT001AP3PO,GQY1XT001BDGKV,GQY1XT001CRVKM,GQY1XT001AVEAJ,GQY1XT001B9Z3U,GQY1XT001EI8ZW,GQY1XT001ELFDK,GQY1XT001CUYG8,GQY1XT001AL3C4,GQY1XT001CULQ2,GQY1XT001DRPCG,GQY1XT001EEQTW,GQY1XT001BVCQD,GQY1XT001AO6K5,GQY1XT001BCE1K,GQY1XT001BG5IY,GQY1XT001DS4JP,GQY1XT001DYO5M,GQY1XT001ESD9U,GQY1XT001CFKFO,GQY1XT001DORP6,GQY1XT001D7K90,GQY1XT001CFI7B,GQY1XT001C5IPF,GQY1XT001C83QE,GQY1XT001CEL2Q,GQY1XT001ASRJ7,GQY1XT001EOAOM,GQY1XT001EOLOU,GQY1XT001ALQHC,GQY1XT001AZWXK,GQY1XT001CK3KY,GQY1XT001BF73E,GQY1XT001BTFI2,GQY1XT001CSDFJ,GQY1XT001DT8WZ,GQY1XT001C7UTJ,GQY1XT001CAREQ,GQY1XT001CTGUT,GQY1XT001BYFO0,GQY1XT001CKT59,GQY1XT001C0GGI,GQY1XT001CJVYG,GQY1XT001EXUP4,GQY1XT001CS4DN,GQY1XT001AXK30,GQY1XT001ER0ZL,GQY1XT001BCXY8,GQY1XT001AT54S,GQY1XT001DFDYG,GQY1XT001D3NE9,GQY1XT001DXDL7,GQY1XT001BAMV9,GQY1XT001EU855,GQY1XT001CCTAT,GQY1XT001B8A1H,GQY1XT001A10GD,GQY1XT001EE313,GQY1XT001AX56U,GQY1XT001BQB86,GQY1XT001CC9L0,GQY1XT001AIDBU,GQY1XT001EJOZ9,GQY1XT001AR2JM,GQY1XT001AZU9V,GQY1XT001EVG08,GQY1XT001DCMCO,GQY1XT001A3JLT,GQY1XT001C1J4X,GQY1XT001EY9UF,GQY1XT001B9H1X,GQY1XT001AHY5U,GQY1XT001EN2AD,GQY1XT001CP85E,GQY1XT001CJWT4,GQY1XT001D1Z3A,GQY1XT001B1V9R,GQY1XT001C7N3U,GQY1XT001A54TK,GQY1XT001C3CRM,GQY1XT001CEYJK,GQY1XT001EQT99,GQY1XT001EOH7D,GQY1XT001CXLS5,GQY1XT001DNADJ,GQY1XT001AIT98,GQY1XT001BE0AF,GQY1XT001EGDQL,GQY1XT001CGTY2,GQY1XT001DTYXT,GQY1XT001B620O,GQY1XT001B2DWY,GQY1XT001DURI7,GQY1XT001D8B40,GQY1XT001B7OWY,GQY1XT001BIBP0,GQY1XT001EVP4Q,GQY1XT001C8SLZ,GQY1XT001ECHUF,GQY1XT001A3MUS,GQY1XT001C3DY8,GQY1XT001AUFD5,GQY1XT001BTNHK,GQY1XT001EI8IN,GQY1XT001D0ARH,GQY1XT001BUGGI,GQY1XT001A7K9S,GQY1XT001BKIL4,GQY1XT001ESW8F,GQY1XT001D7W07,GQY1XT001C82N7,GQY1XT001BIL4C,GQY1XT001ATI06,GQY1XT001A2O0G,GQY1XT001CO5JU,GQY1XT001EEG29,GQY1XT001A97KY,GQY1XT001BQN32,GQY1XT001DRJ4U,GQY1XT001DVNWK,GQY1XT001BHO3G,GQY1XT001AU3GB,GQY1XT001EE8L4,GQY1XT001CZRXD,GQY1XT001AP2HG,GQY1XT001EIWW1,GQY1XT001CNPYJ,GQY1XT001DD3YE,GQY1XT001A9I15,GQY1XT001DS05K,GQY1XT001CZZ2E,GQY1XT001BJZ3D,GQY1XT001ELC9B,GQY1XT001BNGKJ,GQY1XT001CRZDU,GQY1XT001DV0KG,GQY1XT001D406L,GQY1XT001DVBON,GQY1XT001C9J5T,GQY1XT001EY4VA,GQY1XT001AT44T,GQY1XT001AKHFO,GQY1XT001DS5CS,GQY1XT001BKDG3,GQY1XT001AMBXC,GQY1XT001B0579,GQY1XT001CQHZX,GQY1XT001CZY04,GQY1XT001D69LM,GQY1XT001AZ94F,GQY1XT001CEQ0D,GQY1XT001CCJE3,GQY1XT001AKXHR,GQY1XT001BD6I5,GQY1XT001BS8CY,GQY1XT001CEY7E,GQY1XT001DSXMS,GQY1XT001CH48H,GQY1XT001BK3EI,GQY1XT001CGRM1,GQY1XT001BE3F2,GQY1XT001AK3FS,GQY1XT001ET989,GQY1XT001D8QU3,GQY1XT001DKWF2,GQY1XT001DFXTD,GQY1XT001B0NMS,GQY1XT001DZNQ0,GQY1XT001A27ZA,GQY1XT001EP5ZG,GQY1XT001BC2OD,GQY1XT001CS0UB,GQY1XT001A835B,GQY1XT001A77LM,GQY1XT001C7BMG,GQY1XT001CSLYH,GQY1XT001AYVSY,GQY1XT001AFCM4,GQY1XT001BAOGW,GQY1XT001C8YPX,GQY1XT001DVJEN,GQY1XT001C79IQ,GQY1XT001EAKC4,GQY1XT001DXN0V,GQY1XT001EN2RG,GQY1XT001DC4Z2,GQY1XT001D2CGN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARWIN"; +secondCol = "GQY1XT001ARWIN,GQY1XT001DX3R6,GQY1XT001C2R0R,GQY1XT001CKSR2,GQY1XT001DVLEY,GQY1XT001EOBEE,GQY1XT001CR08Q,GQY1XT001DF08S,GQY1XT001AF9F7,GQY1XT001EK81J,GQY1XT001D35MK,GQY1XT001EQ9XO,GQY1XT001ESUW5,GQY1XT001CEG0X,GQY1XT001CJX10,GQY1XT001C0F3V,GQY1XT001A2DEI,GQY1XT001C4TZI,GQY1XT001A7QQQ,GQY1XT001EJ4ZO,GQY1XT001D28ZN,GQY1XT001B7KKQ,GQY1XT001BJRBE,GQY1XT001CUFOC,GQY1XT001EMNTG,GQY1XT001E173G,GQY1XT001DVXE8,GQY1XT001DYFRJ,GQY1XT001EGC6L,GQY1XT001EWTJR,GQY1XT001CRVPG,GQY1XT001CJIGO,GQY1XT001A9IXZ,GQY1XT001AHS0C,GQY1XT001EW7GC,GQY1XT001CNN9B,GQY1XT001CO0YP,GQY1XT001AF1R1,GQY1XT001A1OYP,GQY1XT001BL7YN,GQY1XT001BL0KZ,GQY1XT001CDTJF,GQY1XT001AP99L,GQY1XT001BVGDV,GQY1XT001DK7M4,GQY1XT001CLJ23,GQY1XT001DT1I3,GQY1XT001DEXIH,GQY1XT001D51QR,GQY1XT001C9SFI,GQY1XT001ASYDB,GQY1XT001BUSXC,GQY1XT001CYTOA,GQY1XT001EIGDI,GQY1XT001C1LEY,GQY1XT001ELC0G,GQY1XT001C4VKW,GQY1XT001B8X90,GQY1XT001DJL9U,GQY1XT001AHCIW,GQY1XT001DLDY9,GQY1XT001BIY9K,GQY1XT001EZSI8,GQY1XT001AW1CK,GQY1XT001CVUFQ,GQY1XT001B28QD,GQY1XT001DTN1I,GQY1XT001AIQQQ,GQY1XT001EWKYW,GQY1XT001APJK6,GQY1XT001A0W2V,GQY1XT001EDK4N,GQY1XT001DWKT6,GQY1XT001ASZH9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWF91"; +secondCol = "GQY1XT001DWF91,GQY1XT001ELOOE,GQY1XT001BUEBW,GQY1XT001BAQYL,GQY1XT001BDCUR,GQY1XT001EKHZY,GQY1XT001B96RP,GQY1XT001CBMRX,GQY1XT001DXJHM,GQY1XT001AWGNA,GQY1XT001AVDJW,GQY1XT001CJ5YR,GQY1XT001A7L3F,GQY1XT001CMVTM,GQY1XT001DAGLG,GQY1XT001A96B0,GQY1XT001BC477,GQY1XT001BWHAR,GQY1XT001EJ1QQ,GQY1XT001DJ1FS,GQY1XT001AFVSS,GQY1XT001C183P,GQY1XT001D3BYD,GQY1XT001APUX8,GQY1XT001C4K6P,GQY1XT001BX25J,GQY1XT001BRV0Z,GQY1XT001CJU5G,GQY1XT001A5HTK,GQY1XT001E26I2,GQY1XT001DY3ON,GQY1XT001B073D,GQY1XT001A9HV9,GQY1XT001B3Y65,GQY1XT001AZCPT,GQY1XT001BDZRA,GQY1XT001AIX4R,GQY1XT001B8ZXM,GQY1XT001DG66O,GQY1XT001CAV7J,GQY1XT001EXKJ2,GQY1XT001A7YAR,GQY1XT001ESEG6,GQY1XT001CLPH1,GQY1XT001BSA6K,GQY1XT001BE66V,GQY1XT001AR8M4,GQY1XT001E0W06,GQY1XT001DHW8S,GQY1XT001AI4EA,GQY1XT001D1TEK,GQY1XT001CLALY,GQY1XT001ED5NG,GQY1XT001DPRWL,GQY1XT001DI6SN,GQY1XT001CHOYY,GQY1XT001EKVK5,GQY1XT001EJOF8,GQY1XT001CPAMS,GQY1XT001BNYH3,GQY1XT001A556S,GQY1XT001EG0GQ,GQY1XT001E2DHD,GQY1XT001D83YS,GQY1XT001CPW6W,GQY1XT001AMKZS,GQY1XT001CU3L1,GQY1XT001AXO5B,GQY1XT001DR0K7,GQY1XT001CZ1HR,GQY1XT001A6P1G,GQY1XT001AQES7,GQY1XT001CYAIE,GQY1XT001CCWLY,GQY1XT001CZYAW,GQY1XT001AKG92,GQY1XT001ATWD4,GQY1XT001E381W,GQY1XT001DIEK7,GQY1XT001BR43A,GQY1XT001CJRF3,GQY1XT001BXW0F,GQY1XT001BD8HD,GQY1XT001D5WP2,GQY1XT001ASXGD,GQY1XT001EMXBB,GQY1XT001DS6U6,GQY1XT001A2592,GQY1XT001CABWM,GQY1XT001C9G4G,GQY1XT001BKP4C,GQY1XT001CM4MW,GQY1XT001D3MWX,GQY1XT001DPNRB,GQY1XT001DBETG,GQY1XT001CV0ID,GQY1XT001EGZFV,GQY1XT001CDFY0,GQY1XT001DF9JH,GQY1XT001AUIUB,GQY1XT001EM2C3,GQY1XT001DSBIS,GQY1XT001DN3YC,GQY1XT001CX474,GQY1XT001B376N,GQY1XT001BBB9H,GQY1XT001DKUW2,GQY1XT001EKX84,GQY1XT001DKBNN,GQY1XT001CLAWN,GQY1XT001CBE5K,GQY1XT001BF6QK,GQY1XT001B41UW,GQY1XT001D6QRO,GQY1XT001B7E52,GQY1XT001CFL4V,GQY1XT001BWS2G,GQY1XT001BL8Q9,GQY1XT001BSD8A,GQY1XT001BUYN5,GQY1XT001EDQNH,GQY1XT001AGWTY,GQY1XT001D27PY,GQY1XT001BF5MG,GQY1XT001CGJ63,GQY1XT001CINKC,GQY1XT001DXKIU,GQY1XT001ANQE8,GQY1XT001AV1T3,GQY1XT001EQ9Q8,GQY1XT001DKUK4,GQY1XT001CXD9S,GQY1XT001A7U5R,GQY1XT001A622Y,GQY1XT001AVD4V,GQY1XT001EUZVA,GQY1XT001D0LJB,GQY1XT001CBQKQ,GQY1XT001BYR88,GQY1XT001BE3K8,GQY1XT001A6YE4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6L7F"; +secondCol = "GQY1XT001A6L7F,GQY1XT001CHY2B,GQY1XT001EQM88,GQY1XT001B6KI0,GQY1XT001BOT6R,GQY1XT001BQ3NG,GQY1XT001CISTV,GQY1XT001C2SBK,GQY1XT001BIFYA,GQY1XT001EQDF3,GQY1XT001CFKGX,GQY1XT001BGYKP,GQY1XT001B64D3,GQY1XT001D138I,GQY1XT001BF3XE,GQY1XT001B506Z,GQY1XT001ARFP1,GQY1XT001B03X5,GQY1XT001EMW3H,GQY1XT001AWE8E,GQY1XT001B00QC,GQY1XT001D8P40,GQY1XT001CHU93,GQY1XT001EJJY0,GQY1XT001CO7R2,GQY1XT001BM7P2,GQY1XT001D7FP2,GQY1XT001CY8T4,GQY1XT001EAFA2,GQY1XT001DWLVT,GQY1XT001BMGN1,GQY1XT001DL0HW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCSAA"; +secondCol = "GQY1XT001DCSAA,GQY1XT001DM05P,GQY1XT001EM4TU,GQY1XT001CP58H,GQY1XT001AYFT2,GQY1XT001DDSX2,GQY1XT001A2CSO,GQY1XT001D4LZ5,GQY1XT001CHYDP,GQY1XT001CYAQ9,GQY1XT001AQH89,GQY1XT001EO5IQ,GQY1XT001EL0R8,GQY1XT001AP4HS,GQY1XT001DDNDS,GQY1XT001CM1FL,GQY1XT001DSW6G,GQY1XT001DAOE9,GQY1XT001D1ZMZ,GQY1XT001CWX8X,GQY1XT001B51AX,GQY1XT001CYAUV,GQY1XT001B7Z5H,GQY1XT001CZJ60,GQY1XT001AKXB5,GQY1XT001DOSZ3,GQY1XT001BLDJN,GQY1XT001BZ11O,GQY1XT001CLB0W,GQY1XT001AHX9Y,GQY1XT001A06BY,GQY1XT001CQSCP,GQY1XT001ECWJW,GQY1XT001AG6UK,GQY1XT001B1ZZM,GQY1XT001AWCSA,GQY1XT001EB08G,GQY1XT001E2K8P,GQY1XT001D5G4D,GQY1XT001EASO8,GQY1XT001EP7FY,GQY1XT001DQZP8,GQY1XT001DGSSP,GQY1XT001CZ09G,GQY1XT001BPBIX,GQY1XT001B2XCM,GQY1XT001DGZ0X,GQY1XT001EE2AO,GQY1XT001DI09K,GQY1XT001DTD40,GQY1XT001D8W2L,GQY1XT001DUW7G,GQY1XT001EJ777,GQY1XT001BZ6HC,GQY1XT001BI0AQ,GQY1XT001BGWLS,GQY1XT001ASSX1,GQY1XT001CWU05,GQY1XT001D7XDA,GQY1XT001DE59C,GQY1XT001D7J8J,GQY1XT001A6YR2,GQY1XT001EXJBZ,GQY1XT001DIRNB,GQY1XT001BDTJ9,GQY1XT001DV598,GQY1XT001EPKKJ,GQY1XT001CNYQ7,GQY1XT001C7NR8,GQY1XT001BM9AQ,GQY1XT001BLOBQ,GQY1XT001CPIJY,GQY1XT001BWZAR,GQY1XT001CDNOM,GQY1XT001D9GXZ,GQY1XT001ATVVA,GQY1XT001CRXZT,GQY1XT001C4JRI,GQY1XT001BSMWO,GQY1XT001EK0V0,GQY1XT001DEFMJ,GQY1XT001C91OE,GQY1XT001AT9DO,GQY1XT001A2UXV,GQY1XT001EAMYT,GQY1XT001DPNX8,GQY1XT001CUM19,GQY1XT001BLYGW,GQY1XT001B1SYX,GQY1XT001APHFJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO4OF"; +secondCol = "GQY1XT001AO4OF,GQY1XT001C0RZB,GQY1XT001CXHRB,GQY1XT001C4ERS,GQY1XT001EZ3Y2,GQY1XT001C7Y9U,GQY1XT001C67OK,GQY1XT001CWQ3H,GQY1XT001CNFHK,GQY1XT001CFOB6,GQY1XT001CA946,GQY1XT001C9XAH,GQY1XT001DRNJ4,GQY1XT001ED55X,GQY1XT001A1O7D,GQY1XT001D571Q,GQY1XT001BOWHG,GQY1XT001CM1DO,GQY1XT001D5HGT,GQY1XT001CRY9P,GQY1XT001EFN3U,GQY1XT001BS7KQ,GQY1XT001AVPM6,GQY1XT001AY9I0,GQY1XT001AZDTX,GQY1XT001DB960,GQY1XT001DIWTM,GQY1XT001C0G30"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYTUJ"; +secondCol = "GQY1XT001EYTUJ,GQY1XT001DB37J,GQY1XT001DFIGM,GQY1XT001D224C,GQY1XT001E2NBO,GQY1XT001AVWJ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX7JG"; +secondCol = "GQY1XT001DX7JG,GQY1XT001ETTWL,GQY1XT001EA4B6,GQY1XT001DYVGL,GQY1XT001CY4CH,GQY1XT001APERY,GQY1XT001E3VQH,GQY1XT001DMDNI,GQY1XT001D4AYN,GQY1XT001E1IQX,GQY1XT001CU66U,GQY1XT001EBO4Z,GQY1XT001CPB1A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD6MN"; +secondCol = "GQY1XT001DD6MN,GQY1XT001DTB9K,GQY1XT001BXLNT,GQY1XT001ESVTP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2X6V"; +secondCol = "GQY1XT001A2X6V,GQY1XT001C5FKN,GQY1XT001EYX9J,GQY1XT001B36Y4,GQY1XT001CKXGF,GQY1XT001AM7TN,GQY1XT001CVPON,GQY1XT001DEAM1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ER71E"; +secondCol = "GQY1XT001ER71E,GQY1XT001CDZXV,GQY1XT001CM3EL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK6NY"; +secondCol = "GQY1XT001EK6NY,GQY1XT001EFJSM,GQY1XT001BHMUZ,GQY1XT001DFOI4,GQY1XT001EBEL2,GQY1XT001C7Y9J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0S28"; +secondCol = "GQY1XT001E0S28,GQY1XT001DSW0K,GQY1XT001CMU3X,GQY1XT001DUWJJ,GQY1XT001BHRSV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWQKZ"; +secondCol = "GQY1XT001DWQKZ,GQY1XT001DU0G8,GQY1XT001E5YQY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMFJ7"; +secondCol = "GQY1XT001DMFJ7,GQY1XT001CZLEZ,GQY1XT001B791M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEIXZ"; +secondCol = "GQY1XT001DEIXZ,GQY1XT001CT0R1,GQY1XT001DKLD5,GQY1XT001AXLZ3,GQY1XT001C8S2V,GQY1XT001EJJ77"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRU7B"; +secondCol = "GQY1XT001CRU7B,GQY1XT001BBA4J,GQY1XT001BWZOV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQC5Q"; +secondCol = "GQY1XT001CQC5Q,GQY1XT001BLJ5V,GQY1XT001DZ3PD,GQY1XT001CY6L2,GQY1XT001D1A3J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EURNN"; +secondCol = "GQY1XT001EURNN,GQY1XT001EAENN,GQY1XT001CEUEX,GQY1XT001D0H1E,GQY1XT001EE9TK,GQY1XT001DWV4P,GQY1XT001BPI76,GQY1XT001DXR0D,GQY1XT001EFXZ8,GQY1XT001EGF4Y,GQY1XT001CMOSV,GQY1XT001CY930,GQY1XT001ETDO9,GQY1XT001C6T52,GQY1XT001AO426,GQY1XT001CA813,GQY1XT001C3RYB,GQY1XT001DWVSO,GQY1XT001BJ1GY,GQY1XT001A21HK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETZ76"; +secondCol = "GQY1XT001ETZ76,GQY1XT001AMS48,GQY1XT001D99LZ,GQY1XT001DKJ14,GQY1XT001BBAIU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E25J6"; +secondCol = "GQY1XT001E25J6,GQY1XT001DVN8I,GQY1XT001D3GGF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUTRF"; +secondCol = "GQY1XT001DUTRF,GQY1XT001B9ATC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DP8X2"; +secondCol = "GQY1XT001DP8X2,GQY1XT001ES5HC,GQY1XT001E5Y6Y,GQY1XT001DD1M6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDM4B"; +secondCol = "GQY1XT001DDM4B,GQY1XT001EM8A7,GQY1XT001AXHQK,GQY1XT001B39PI,GQY1XT001BQSUE,GQY1XT001AUBD8,GQY1XT001D3723,GQY1XT001COU26,GQY1XT001AFYZV,GQY1XT001DF9W6,GQY1XT001CM9DN,GQY1XT001DPQ7V,GQY1XT001AFTVU,GQY1XT001DWJK7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CV0CL"; +secondCol = "GQY1XT001CV0CL,GQY1XT001DTZZ0,GQY1XT001DNUVS,GQY1XT001AN3G4,GQY1XT001BQ738,GQY1XT001ERNSB,GQY1XT001CH6PF,GQY1XT001CH2JS,GQY1XT001C5JEI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRXFZ"; +secondCol = "GQY1XT001CRXFZ,GQY1XT001B3RSF,GQY1XT001BGKO4,GQY1XT001BNT1D,GQY1XT001C2HMG,GQY1XT001AW59X,GQY1XT001C7D3I,GQY1XT001B90XP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJN5F"; +secondCol = "GQY1XT001CJN5F,GQY1XT001ANP9J,GQY1XT001CL9FV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8VP3"; +secondCol = "GQY1XT001C8VP3,GQY1XT001AFO8V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWP2E"; +secondCol = "GQY1XT001BWP2E,GQY1XT001CJQ0E,GQY1XT001B9E6J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPR6V"; +secondCol = "GQY1XT001BPR6V,GQY1XT001BTXCT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH3F6"; +secondCol = "GQY1XT001BH3F6,GQY1XT001EPT81,GQY1XT001AX5D9,GQY1XT001BWTZ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6491"; +secondCol = "GQY1XT001B6491,GQY1XT001D1GW7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUFBS"; +secondCol = "GQY1XT001AUFBS,GQY1XT001EIH2C,GQY1XT001CTNE4,GQY1XT001CABNX,GQY1XT001C4PRZ,GQY1XT001CV1QO,GQY1XT001D9JGO,GQY1XT001D5CQH,GQY1XT001B96U6,GQY1XT001CH3TT,GQY1XT001CQ3S6,GQY1XT001EV1NE,GQY1XT001ED471,GQY1XT001D2QQD,GQY1XT001BPGJ9,GQY1XT001AS0LZ,GQY1XT001EEJY1,GQY1XT001ERQAQ,GQY1XT001C8U1I,GQY1XT001D8WWO,GQY1XT001E3SMX,GQY1XT001AJO5G,GQY1XT001AIOXR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AT9WW"; +secondCol = "GQY1XT001AT9WW,GQY1XT001CL10P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APJL5"; +secondCol = "GQY1XT001APJL5,GQY1XT001AG3U6,GQY1XT001E0WDP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A79Q2"; +secondCol = "GQY1XT001A79Q2,GQY1XT001DH4K9,GQY1XT001C5ELD,GQY1XT001B6ZME,GQY1XT001AJ5GP,GQY1XT001DFH18,GQY1XT001BIEJ0,GQY1XT001BKG8J,GQY1XT001BOEZM,GQY1XT001DTVV8,GQY1XT001E3SG3,GQY1XT001C4P49,GQY1XT001EMBXM,GQY1XT001ENTV9,GQY1XT001ERNN0,GQY1XT001A54VD,GQY1XT001EHIZU,GQY1XT001CG57K,GQY1XT001DEOPW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5DY7"; +secondCol = "GQY1XT001A5DY7,GQY1XT001DKT0L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A57CJ"; +secondCol = "GQY1XT001A57CJ,GQY1XT001C0RMS,GQY1XT001AVTC0,GQY1XT001BBZIV,GQY1XT001B4B71,GQY1XT001BPWJI,GQY1XT001DV3TJ,GQY1XT001CUZ0A,GQY1XT001CJW2T,GQY1XT001BLVRK,GQY1XT001CTWH4,GQY1XT001CDVSN,GQY1XT001A0DYC,GQY1XT001BKQHN,GQY1XT001D7QBP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A180R"; +secondCol = "GQY1XT001A180R,GQY1XT001BQQLQ,GQY1XT001ELREE,GQY1XT001B8J3F,GQY1XT001CKZA8,GQY1XT001C65GE,GQY1XT001C4URK,GQY1XT001AJ3MM,GQY1XT001ANVBO,GQY1XT001EP9XM,GQY1XT001EB6KJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZ0T4"; +secondCol = "GQY1XT001EZ0T4,GQY1XT001DVDIA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYASV"; +secondCol = "GQY1XT001EYASV,GQY1XT001AEJ3Q,GQY1XT001EIS4K,GQY1XT001CKSRB,GQY1XT001BH9BG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX8JH"; +secondCol = "GQY1XT001EX8JH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWSQ7"; +secondCol = "GQY1XT001EWSQ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWJ0G"; +secondCol = "GQY1XT001EWJ0G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWCLZ"; +secondCol = "GQY1XT001EWCLZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EW4SG"; +secondCol = "GQY1XT001EW4SG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVMR1"; +secondCol = "GQY1XT001EVMR1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESC8I"; +secondCol = "GQY1XT001ESC8I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES7A7"; +secondCol = "GQY1XT001ES7A7,GQY1XT001DLNXO,GQY1XT001B4H1S,GQY1XT001AO1L7,GQY1XT001CZ4QM,GQY1XT001ARS51,GQY1XT001DF48R,GQY1XT001EH621,GQY1XT001D2XCP,GQY1XT001ELT1L,GQY1XT001CK3O5,GQY1XT001DNILG,GQY1XT001D1J7H,GQY1XT001BBLIY,GQY1XT001EOXYH,GQY1XT001ER98G,GQY1XT001BUFPF,GQY1XT001BOOF0,GQY1XT001EOC5Z,GQY1XT001DVXCW,GQY1XT001DAK9J,GQY1XT001CXGDM,GQY1XT001AOKBZ,GQY1XT001APO8A,GQY1XT001DKDYR,GQY1XT001DZMV9,GQY1XT001BZZMF,GQY1XT001CW8PX,GQY1XT001EG8QZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERCRU"; +secondCol = "GQY1XT001ERCRU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPXLK"; +secondCol = "GQY1XT001EPXLK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPRKA"; +secondCol = "GQY1XT001EPRKA,GQY1XT001C2FQY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EP50F"; +secondCol = "GQY1XT001EP50F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENIJK"; +secondCol = "GQY1XT001ENIJK,GQY1XT001BYN8Y,GQY1XT001DUBK9,GQY1XT001DRUMJ,GQY1XT001AY5L3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELQAV"; +secondCol = "GQY1XT001ELQAV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL1XN"; +secondCol = "GQY1XT001EL1XN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK9UC"; +secondCol = "GQY1XT001EK9UC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ6IE"; +secondCol = "GQY1XT001EJ6IE,GQY1XT001BXQEM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EINOB"; +secondCol = "GQY1XT001EINOB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHR1D"; +secondCol = "GQY1XT001EHR1D,GQY1XT001C49K0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG89W"; +secondCol = "GQY1XT001EG89W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EE7HC"; +secondCol = "GQY1XT001EE7HC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDX2L"; +secondCol = "GQY1XT001EDX2L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECV6N"; +secondCol = "GQY1XT001ECV6N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC768"; +secondCol = "GQY1XT001EC768"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC5ZD"; +secondCol = "GQY1XT001EC5ZD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBILS"; +secondCol = "GQY1XT001EBILS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E5VFY"; +secondCol = "GQY1XT001E5VFY,GQY1XT001A29MU,GQY1XT001A6WVR,GQY1XT001C80W6,GQY1XT001CW5YH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E4RC6"; +secondCol = "GQY1XT001E4RC6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E26E5"; +secondCol = "GQY1XT001E26E5,GQY1XT001B88T6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZGN2"; +secondCol = "GQY1XT001DZGN2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY9EE"; +secondCol = "GQY1XT001DY9EE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXZ94"; +secondCol = "GQY1XT001DXZ94"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXXRY"; +secondCol = "GQY1XT001DXXRY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX5YX"; +secondCol = "GQY1XT001DX5YX,GQY1XT001AGXL6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWB8A"; +secondCol = "GQY1XT001DWB8A,GQY1XT001BXO2B,GQY1XT001ESZMV,GQY1XT001AIRTG,GQY1XT001BN7K9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW661"; +secondCol = "GQY1XT001DW661"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVVV9"; +secondCol = "GQY1XT001DVVV9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVRMX"; +secondCol = "GQY1XT001DVRMX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUGOQ"; +secondCol = "GQY1XT001DUGOQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSKYO"; +secondCol = "GQY1XT001DSKYO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQEX4"; +secondCol = "GQY1XT001DQEX4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPQ0U"; +secondCol = "GQY1XT001DPQ0U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DP988"; +secondCol = "GQY1XT001DP988"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOEFT"; +secondCol = "GQY1XT001DOEFT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMV73"; +secondCol = "GQY1XT001DMV73"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMAIL"; +secondCol = "GQY1XT001DMAIL,GQY1XT001BN4E5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJKAP"; +secondCol = "GQY1XT001DJKAP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIY7I"; +secondCol = "GQY1XT001DIY7I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DI2F4"; +secondCol = "GQY1XT001DI2F4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DG89M"; +secondCol = "GQY1XT001DG89M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFPOZ"; +secondCol = "GQY1XT001DFPOZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFNZA"; +secondCol = "GQY1XT001DFNZA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFFH1"; +secondCol = "GQY1XT001DFFH1,GQY1XT001DJ5B3,GQY1XT001CLHXL,GQY1XT001AX4MT,GQY1XT001ARUA5,GQY1XT001AGEAM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DECCK"; +secondCol = "GQY1XT001DECCK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDP54"; +secondCol = "GQY1XT001DDP54"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCWXL"; +secondCol = "GQY1XT001DCWXL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCROU"; +secondCol = "GQY1XT001DCROU,GQY1XT001BEHZS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCHHZ"; +secondCol = "GQY1XT001DCHHZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBR6R"; +secondCol = "GQY1XT001DBR6R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBR15"; +secondCol = "GQY1XT001DBR15"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DB6W5"; +secondCol = "GQY1XT001DB6W5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DB48V"; +secondCol = "GQY1XT001DB48V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAXHO"; +secondCol = "GQY1XT001DAXHO,GQY1XT001C5X6Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DA3NK"; +secondCol = "GQY1XT001DA3NK,GQY1XT001EUWBE,GQY1XT001AWZQD,GQY1XT001B72OX,GQY1XT001B1G68,GQY1XT001EOMCY,GQY1XT001CAI1Q,GQY1XT001BN3XL,GQY1XT001EBPVF,GQY1XT001BVXYF,GQY1XT001CWQ1E,GQY1XT001DVX09"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9XV0"; +secondCol = "GQY1XT001D9XV0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9PEI"; +secondCol = "GQY1XT001D9PEI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9NS0"; +secondCol = "GQY1XT001D9NS0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9LBF"; +secondCol = "GQY1XT001D9LBF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D90UB"; +secondCol = "GQY1XT001D90UB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7SQ4"; +secondCol = "GQY1XT001D7SQ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D73BL"; +secondCol = "GQY1XT001D73BL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6WIL"; +secondCol = "GQY1XT001D6WIL,GQY1XT001EQFWO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D54HY"; +secondCol = "GQY1XT001D54HY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4WJX"; +secondCol = "GQY1XT001D4WJX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4IMR"; +secondCol = "GQY1XT001D4IMR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4AF7"; +secondCol = "GQY1XT001D4AF7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D404H"; +secondCol = "GQY1XT001D404H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3JL9"; +secondCol = "GQY1XT001D3JL9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D36LX"; +secondCol = "GQY1XT001D36LX,GQY1XT001DUELP,GQY1XT001DVGXF,GQY1XT001CD9JJ,GQY1XT001C5LTP,GQY1XT001EL9JG,GQY1XT001ALAD7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D34SX"; +secondCol = "GQY1XT001D34SX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2Z78"; +secondCol = "GQY1XT001D2Z78"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D26TY"; +secondCol = "GQY1XT001D26TY,GQY1XT001BX7DJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0PS5"; +secondCol = "GQY1XT001D0PS5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D096N"; +secondCol = "GQY1XT001D096N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZLBS"; +secondCol = "GQY1XT001CZLBS,GQY1XT001CC7FR,GQY1XT001BQC4F,GQY1XT001BXVDO,GQY1XT001DUZC6,GQY1XT001C8S6T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZJDF"; +secondCol = "GQY1XT001CZJDF,GQY1XT001CF9DG,GQY1XT001C9LO5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZIDF"; +secondCol = "GQY1XT001CZIDF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYTB5"; +secondCol = "GQY1XT001CYTB5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXSFV"; +secondCol = "GQY1XT001CXSFV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVW9J"; +secondCol = "GQY1XT001CVW9J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVNYD"; +secondCol = "GQY1XT001CVNYD,GQY1XT001BVPNV,GQY1XT001DZCHP,GQY1XT001D35PG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVDAV"; +secondCol = "GQY1XT001CVDAV,GQY1XT001D4LW4,GQY1XT001CYFMZ,GQY1XT001DR6H8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTR8U"; +secondCol = "GQY1XT001CTR8U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CT03W"; +secondCol = "GQY1XT001CT03W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSFPB"; +secondCol = "GQY1XT001CSFPB,GQY1XT001CSJXU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSE8M"; +secondCol = "GQY1XT001CSE8M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS75Q"; +secondCol = "GQY1XT001CS75Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRCO3"; +secondCol = "GQY1XT001CRCO3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CR3OY"; +secondCol = "GQY1XT001CR3OY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQNP0"; +secondCol = "GQY1XT001CQNP0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQISV"; +secondCol = "GQY1XT001CQISV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO2B2"; +secondCol = "GQY1XT001CO2B2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO0A6"; +secondCol = "GQY1XT001CO0A6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN21H"; +secondCol = "GQY1XT001CN21H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMSDB"; +secondCol = "GQY1XT001CMSDB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMP9R"; +secondCol = "GQY1XT001CMP9R,GQY1XT001BXDKT,GQY1XT001E3EXL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM9OV"; +secondCol = "GQY1XT001CM9OV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM539"; +secondCol = "GQY1XT001CM539"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM0Q4"; +secondCol = "GQY1XT001CM0Q4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLDR0"; +secondCol = "GQY1XT001CLDR0,GQY1XT001DTAK7,GQY1XT001EBQY4,GQY1XT001E1XYL,GQY1XT001E05JB,GQY1XT001B7MJ8,GQY1XT001D22F5,GQY1XT001DRPC1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKNS4"; +secondCol = "GQY1XT001CKNS4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJLK2"; +secondCol = "GQY1XT001CJLK2,GQY1XT001ALVR4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJIIR"; +secondCol = "GQY1XT001CJIIR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJAFS"; +secondCol = "GQY1XT001CJAFS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ3M8"; +secondCol = "GQY1XT001CJ3M8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ0AB"; +secondCol = "GQY1XT001CJ0AB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIODF"; +secondCol = "GQY1XT001CIODF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CID7T"; +secondCol = "GQY1XT001CID7T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIB8G"; +secondCol = "GQY1XT001CIB8G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH8FI"; +secondCol = "GQY1XT001CH8FI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFUS2"; +secondCol = "GQY1XT001CFUS2,GQY1XT001DSCU7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFEOC"; +secondCol = "GQY1XT001CFEOC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFDUW"; +secondCol = "GQY1XT001CFDUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CED3S"; +secondCol = "GQY1XT001CED3S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CE5F9"; +secondCol = "GQY1XT001CE5F9,GQY1XT001AGNJI,GQY1XT001A0Z22,GQY1XT001BNFF0,GQY1XT001D969Z,GQY1XT001D3RUI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCIDU"; +secondCol = "GQY1XT001CCIDU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBTVR"; +secondCol = "GQY1XT001CBTVR,GQY1XT001BJ1S8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CB6LJ"; +secondCol = "GQY1XT001CB6LJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAO9E"; +secondCol = "GQY1XT001CAO9E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9TKV"; +secondCol = "GQY1XT001C9TKV,GQY1XT001B3AOV,GQY1XT001CS5J4,GQY1XT001CF3MW,GQY1XT001AGTAO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9NXV"; +secondCol = "GQY1XT001C9NXV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8JHR"; +secondCol = "GQY1XT001C8JHR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7ZUB"; +secondCol = "GQY1XT001C7ZUB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7O3D"; +secondCol = "GQY1XT001C7O3D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6LWA"; +secondCol = "GQY1XT001C6LWA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6HBD"; +secondCol = "GQY1XT001C6HBD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C653P"; +secondCol = "GQY1XT001C653P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5MUK"; +secondCol = "GQY1XT001C5MUK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4W7P"; +secondCol = "GQY1XT001C4W7P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C34WE"; +secondCol = "GQY1XT001C34WE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2MZ1"; +secondCol = "GQY1XT001C2MZ1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C24KA"; +secondCol = "GQY1XT001C24KA,GQY1XT001BIGGE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1J8R"; +secondCol = "GQY1XT001C1J8R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C063V"; +secondCol = "GQY1XT001C063V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZVNE"; +secondCol = "GQY1XT001BZVNE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZDM7"; +secondCol = "GQY1XT001BZDM7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY007"; +secondCol = "GQY1XT001BY007"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXHIS"; +secondCol = "GQY1XT001BXHIS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BX11Y"; +secondCol = "GQY1XT001BX11Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWODL"; +secondCol = "GQY1XT001BWODL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW0YY"; +secondCol = "GQY1XT001BW0YY,GQY1XT001BD0J7,GQY1XT001CQ1F6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVIE9"; +secondCol = "GQY1XT001BVIE9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVA7U"; +secondCol = "GQY1XT001BVA7U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUF2I"; +secondCol = "GQY1XT001BUF2I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSJ6O"; +secondCol = "GQY1XT001BSJ6O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BROZN"; +secondCol = "GQY1XT001BROZN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPYYS"; +secondCol = "GQY1XT001BPYYS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BN5O9"; +secondCol = "GQY1XT001BN5O9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLPCS"; +secondCol = "GQY1XT001BLPCS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKAZ3"; +secondCol = "GQY1XT001BKAZ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJITH"; +secondCol = "GQY1XT001BJITH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJIGU"; +secondCol = "GQY1XT001BJIGU,GQY1XT001B98TG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ3FA"; +secondCol = "GQY1XT001BJ3FA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIZB8"; +secondCol = "GQY1XT001BIZB8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI4HN"; +secondCol = "GQY1XT001BI4HN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH4H2"; +secondCol = "GQY1XT001BH4H2,GQY1XT001CVSJM,GQY1XT001AU8I8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGGFI"; +secondCol = "GQY1XT001BGGFI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFQBJ"; +secondCol = "GQY1XT001BFQBJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE8ZJ"; +secondCol = "GQY1XT001BE8ZJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDSVG"; +secondCol = "GQY1XT001BDSVG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDGGT"; +secondCol = "GQY1XT001BDGGT,GQY1XT001AR3G9,GQY1XT001CM14B,GQY1XT001CJXRL,GQY1XT001DPB1K,GQY1XT001DN1EM,GQY1XT001D5P5Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDBLL"; +secondCol = "GQY1XT001BDBLL,GQY1XT001AXCT8,GQY1XT001ENN9Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCIU5"; +secondCol = "GQY1XT001BCIU5,GQY1XT001DF6SQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BADJQ"; +secondCol = "GQY1XT001BADJQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9ID3"; +secondCol = "GQY1XT001B9ID3,GQY1XT001EDSJJ,GQY1XT001CTDXB,GQY1XT001AQ5GG,GQY1XT001CLLR8,GQY1XT001D562G,GQY1XT001DTBMO,GQY1XT001A6YG6,GQY1XT001DCCO7,GQY1XT001EVNMK,GQY1XT001EK4GZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B948Z"; +secondCol = "GQY1XT001B948Z,GQY1XT001CTIBP,GQY1XT001BTF1X,GQY1XT001A2N31,GQY1XT001AX6RH,GQY1XT001CPNTI,GQY1XT001BUYFR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B92EF"; +secondCol = "GQY1XT001B92EF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B91G9"; +secondCol = "GQY1XT001B91G9,GQY1XT001A90XS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8YZD"; +secondCol = "GQY1XT001B8YZD,GQY1XT001CO50N,GQY1XT001BDVZB,GQY1XT001APOHN,GQY1XT001BUCM4,GQY1XT001BQKOR,GQY1XT001C3H76,GQY1XT001CNMPZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8ILX"; +secondCol = "GQY1XT001B8ILX,GQY1XT001DZ35U,GQY1XT001CIDYK,GQY1XT001ESIO9,GQY1XT001C4GD9,GQY1XT001BQOAX,GQY1XT001AFWCT,GQY1XT001C45HM,GQY1XT001CLAQ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7HR5"; +secondCol = "GQY1XT001B7HR5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B78LF"; +secondCol = "GQY1XT001B78LF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B760U"; +secondCol = "GQY1XT001B760U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5012"; +secondCol = "GQY1XT001B5012"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3JPS"; +secondCol = "GQY1XT001B3JPS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2Z3X"; +secondCol = "GQY1XT001B2Z3X,GQY1XT001BHO3N,GQY1XT001DGM9A,GQY1XT001EFOZ9,GQY1XT001BAVO0,GQY1XT001C3VM1,GQY1XT001A2U79,GQY1XT001AN9XZ,GQY1XT001A7ORK,GQY1XT001B7F4Q,GQY1XT001C62AV,GQY1XT001CLDIL,GQY1XT001BZ70Z,GQY1XT001DE15V,GQY1XT001CYPSR,GQY1XT001C4JCG,GQY1XT001DG2JP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2WW2"; +secondCol = "GQY1XT001B2WW2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2ISN"; +secondCol = "GQY1XT001B2ISN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZODE"; +secondCol = "GQY1XT001AZODE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZIY5"; +secondCol = "GQY1XT001AZIY5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ137"; +secondCol = "GQY1XT001AZ137"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ0J0"; +secondCol = "GQY1XT001AZ0J0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXWM2"; +secondCol = "GQY1XT001AXWM2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXWKG"; +secondCol = "GQY1XT001AXWKG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXFW6"; +secondCol = "GQY1XT001AXFW6,GQY1XT001ANA3U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWGFR"; +secondCol = "GQY1XT001AWGFR,GQY1XT001AW2VI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVIEN"; +secondCol = "GQY1XT001AVIEN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARHZE"; +secondCol = "GQY1XT001ARHZE,GQY1XT001C9KNB,GQY1XT001BGM1W,GQY1XT001DFU7T,GQY1XT001A74AF,GQY1XT001DAPPU,GQY1XT001ATDNU,GQY1XT001AEWC6,GQY1XT001AU90I,GQY1XT001BH1PX,GQY1XT001BSB25"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APWQ4"; +secondCol = "GQY1XT001APWQ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP3GC"; +secondCol = "GQY1XT001AP3GC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOY82"; +secondCol = "GQY1XT001AOY82"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOTBI"; +secondCol = "GQY1XT001AOTBI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANPOD"; +secondCol = "GQY1XT001ANPOD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN0O0"; +secondCol = "GQY1XT001AN0O0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AM04G"; +secondCol = "GQY1XT001AM04G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJDZP"; +secondCol = "GQY1XT001AJDZP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJBW8"; +secondCol = "GQY1XT001AJBW8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ8JE"; +secondCol = "GQY1XT001AJ8JE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHQ4E"; +secondCol = "GQY1XT001AHQ4E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGQKS"; +secondCol = "GQY1XT001AGQKS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFW2U"; +secondCol = "GQY1XT001AFW2U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF3OR"; +secondCol = "GQY1XT001AF3OR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEJCX"; +secondCol = "GQY1XT001AEJCX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9WRU"; +secondCol = "GQY1XT001A9WRU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9CWO"; +secondCol = "GQY1XT001A9CWO,GQY1XT001BH2UW,GQY1XT001C0YAD,GQY1XT001C274E,GQY1XT001EBMVQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A90IT"; +secondCol = "GQY1XT001A90IT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8LEY"; +secondCol = "GQY1XT001A8LEY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6JJ4"; +secondCol = "GQY1XT001A6JJ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5ZJV"; +secondCol = "GQY1XT001A5ZJV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5X5F"; +secondCol = "GQY1XT001A5X5F,GQY1XT001EUL48,GQY1XT001DZ9K3,GQY1XT001C9LQJ,GQY1XT001D61QW,GQY1XT001CBAG8,GQY1XT001CVU15,GQY1XT001CVD02,GQY1XT001AH9RQ,GQY1XT001DIP35,GQY1XT001CYZT8,GQY1XT001BI6CW,GQY1XT001BG7PZ,GQY1XT001BWPKE,GQY1XT001BY508,GQY1XT001CTKFI,GQY1XT001EM7HX,GQY1XT001D9HM7,GQY1XT001ATS69,GQY1XT001A8YQA,GQY1XT001BNJPN,GQY1XT001CVDFY,GQY1XT001DI5Q0,GQY1XT001CM7AO,GQY1XT001DA1CO,GQY1XT001COV0A,GQY1XT001AZVLU,GQY1XT001AZVB3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4Y95"; +secondCol = "GQY1XT001A4Y95"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3TPF"; +secondCol = "GQY1XT001A3TPF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A35IX"; +secondCol = "GQY1XT001A35IX,GQY1XT001A7SF3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2MTB"; +secondCol = "GQY1XT001A2MTB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A103Z"; +secondCol = "GQY1XT001A103Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AH00T"; +secondCol = "GQY1XT001AH00T,GQY1XT001BF1SN,GQY1XT001C3M22,GQY1XT001A91EU,GQY1XT001BAALL,GQY1XT001DK7MT,GQY1XT001C8T77,GQY1XT001DOQXC,GQY1XT001EVPYY,GQY1XT001BRCJ1,GQY1XT001DBRZG,GQY1XT001C86TT,GQY1XT001DX62X,GQY1XT001EBROS,GQY1XT001B546T,GQY1XT001C4CBP,GQY1XT001B4MWS,GQY1XT001A497K,GQY1XT001ED940,GQY1XT001A3B09,GQY1XT001AJRFY,GQY1XT001AVK2K,GQY1XT001BOKJR,GQY1XT001B9UW4,GQY1XT001DK3P8,GQY1XT001AGJH4,GQY1XT001BE2SR,GQY1XT001B4FF4,GQY1XT001DV8H0,GQY1XT001BI627,GQY1XT001DZOUM,GQY1XT001DDRXZ,GQY1XT001C37T4,GQY1XT001BSO6R,GQY1XT001CDGSQ,GQY1XT001B6W88"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2VYN"; +secondCol = "GQY1XT001B2VYN,GQY1XT001AT552,GQY1XT001BYLYZ,GQY1XT001BKZRT,GQY1XT001CHYU4,GQY1XT001ETHGA,GQY1XT001DFDG1,GQY1XT001DYVO9,GQY1XT001CNLV1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5VZB"; +secondCol = "GQY1XT001C5VZB,GQY1XT001EYKA9,GQY1XT001A7CG4,GQY1XT001BNI15,GQY1XT001DY0HH,GQY1XT001AZWCN,GQY1XT001EBKDV,GQY1XT001D3CP6,GQY1XT001CIGXB,GQY1XT001BL9ML,GQY1XT001BKU6T,GQY1XT001EMYXI,GQY1XT001B33XS,GQY1XT001CQKZI,GQY1XT001CKG8U,GQY1XT001AR05W,GQY1XT001C9PNM,GQY1XT001C4PJ3,GQY1XT001DXEWE,GQY1XT001D3OVW,GQY1XT001EFG3K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3CGW"; +secondCol = "GQY1XT001C3CGW,GQY1XT001DKBMB,GQY1XT001DOK43,GQY1XT001AVEUV,GQY1XT001A3V3X,GQY1XT001C16P0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BX1WD"; +secondCol = "GQY1XT001BX1WD,GQY1XT001CYYF6,GQY1XT001BBAED,GQY1XT001A4TMW,GQY1XT001BIBSZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERPB8"; +secondCol = "GQY1XT001ERPB8,GQY1XT001DT1GR,GQY1XT001EBPU8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK4QD"; +secondCol = "GQY1XT001EK4QD,GQY1XT001DRHNA,GQY1XT001D4GOD,GQY1XT001EXJBF,GQY1XT001EBHXX,GQY1XT001CNPKY,GQY1XT001BUEHW,GQY1XT001AP7DE,GQY1XT001DAXLL,GQY1XT001D80X4,GQY1XT001D9ZE2,GQY1XT001A4Q8B,GQY1XT001AELGV,GQY1XT001EXH7D,GQY1XT001EI0NQ,GQY1XT001DSLB4,GQY1XT001EL5FX,GQY1XT001A4JHG,GQY1XT001E3E6Q,GQY1XT001EQTXU,GQY1XT001B683D,GQY1XT001D10F2,GQY1XT001B4DGD,GQY1XT001BIP8F,GQY1XT001D3SKJ,GQY1XT001BXHAY,GQY1XT001CJY1V,GQY1XT001BVS1L,GQY1XT001DM7FT,GQY1XT001COHRT,GQY1XT001COKQQ,GQY1XT001AO4VG,GQY1XT001CL1SV,GQY1XT001CA3LD,GQY1XT001BYMS4,GQY1XT001ER02J,GQY1XT001BWC6W,GQY1XT001CL0BE,GQY1XT001ET53E,GQY1XT001AHY45,GQY1XT001AWB6Y,GQY1XT001ER13J,GQY1XT001DUIFX,GQY1XT001B2WSX,GQY1XT001ANHMW,GQY1XT001CM7IS,GQY1XT001A7X5W,GQY1XT001AT2U5,GQY1XT001BPQ7N,GQY1XT001AWR1B,GQY1XT001AO3V8,GQY1XT001BHKBF,GQY1XT001AM8T1,GQY1XT001BZEKY,GQY1XT001CGRPU,GQY1XT001A0D9C,GQY1XT001BWCVB,GQY1XT001E1F5N,GQY1XT001DI2NV,GQY1XT001CWGOW,GQY1XT001C3TH6,GQY1XT001D6GYM,GQY1XT001AQ0U4,GQY1XT001DSBQL,GQY1XT001DT9IS,GQY1XT001BKJYT,GQY1XT001BFWPJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0JJ6"; +secondCol = "GQY1XT001E0JJ6,GQY1XT001CULCC,GQY1XT001EQ8DL,GQY1XT001EVTSG,GQY1XT001EGWQI,GQY1XT001AV0W0,GQY1XT001AJA5R,GQY1XT001BCK8K,GQY1XT001DFDSS,GQY1XT001EKU3O,GQY1XT001E4KTA,GQY1XT001B00RW,GQY1XT001B3ORE,GQY1XT001C4T3G,GQY1XT001EZKU4,GQY1XT001DBCET,GQY1XT001D00JD,GQY1XT001E0QFN,GQY1XT001CDX0I,GQY1XT001AN63N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DI6MT"; +secondCol = "GQY1XT001DI6MT,GQY1XT001CZCXQ,GQY1XT001CPDFR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTMYM"; +secondCol = "GQY1XT001CTMYM,GQY1XT001EKVOR,GQY1XT001BG6OY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGMM4"; +secondCol = "GQY1XT001CGMM4,GQY1XT001EWV0L,GQY1XT001DCRW5,GQY1XT001DE34I,GQY1XT001CRZON,GQY1XT001C8VJZ,GQY1XT001ECYKW,GQY1XT001CVBIM,GQY1XT001DWSMH,GQY1XT001ESUY8,GQY1XT001CKG2I,GQY1XT001D2P2A,GQY1XT001COEA0,GQY1XT001D0XYI,GQY1XT001AO54Q,GQY1XT001EYMN1,GQY1XT001BA7T6,GQY1XT001D65K6,GQY1XT001E116B,GQY1XT001BN3ZR,GQY1XT001AUBAB,GQY1XT001DF23T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8CYT"; +secondCol = "GQY1XT001C8CYT,GQY1XT001AIIS4,GQY1XT001D2IKB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1TAA"; +secondCol = "GQY1XT001C1TAA,GQY1XT001DPTW8,GQY1XT001EHQCV,GQY1XT001CXYDB,GQY1XT001AW3FN,GQY1XT001EO9AV,GQY1XT001BKCSV,GQY1XT001A6U0A,GQY1XT001ERWKR,GQY1XT001CB496"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARJ71"; +secondCol = "GQY1XT001ARJ71,GQY1XT001D7HC0,GQY1XT001AKOP8,GQY1XT001AW4T4,GQY1XT001BA0S4,GQY1XT001BYA1D,GQY1XT001COAU5,GQY1XT001EMP2H,GQY1XT001AW49X,GQY1XT001CFK48"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANOGE"; +secondCol = "GQY1XT001ANOGE,GQY1XT001CKFLV,GQY1XT001BC8YT,GQY1XT001BOBNA,GQY1XT001A8PWG,GQY1XT001BNO0I,GQY1XT001E2E2T,GQY1XT001AWDNG,GQY1XT001CJ3GC,GQY1XT001CGJKY,GQY1XT001EYN8C,GQY1XT001B0NOO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1PQ5"; +secondCol = "GQY1XT001A1PQ5,GQY1XT001C5W5K,GQY1XT001CULT7,GQY1XT001DGBUB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWMVA"; +secondCol = "GQY1XT001EWMVA,GQY1XT001EXM2W,GQY1XT001CDUK8,GQY1XT001D1CGN,GQY1XT001BAA9D,GQY1XT001B0RO7,GQY1XT001AJNG8,GQY1XT001EBHWK,GQY1XT001EEB64,GQY1XT001CX05M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU4WB"; +secondCol = "GQY1XT001EU4WB,GQY1XT001EY06B,GQY1XT001EJ1KF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES0JB"; +secondCol = "GQY1XT001ES0JB,GQY1XT001CXK83,GQY1XT001CQLU7,GQY1XT001AKBPB,GQY1XT001C7NLQ,GQY1XT001AMYCH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENTCB"; +secondCol = "GQY1XT001ENTCB,GQY1XT001AWO1P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EN26C"; +secondCol = "GQY1XT001EN26C,GQY1XT001BTJQ1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK1FO"; +secondCol = "GQY1XT001EK1FO,GQY1XT001EOUKJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECKCE"; +secondCol = "GQY1XT001ECKCE,GQY1XT001C761F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWTG9"; +secondCol = "GQY1XT001DWTG9,GQY1XT001CSRLP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DG6NS"; +secondCol = "GQY1XT001DG6NS,GQY1XT001A6719,GQY1XT001EDO8U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDPZU"; +secondCol = "GQY1XT001DDPZU,GQY1XT001DWWGN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBZNZ"; +secondCol = "GQY1XT001DBZNZ,GQY1XT001E38NU,GQY1XT001CQB0M,GQY1XT001CFHVO,GQY1XT001D79TY,GQY1XT001EKUJZ,GQY1XT001C2RRA,GQY1XT001EM3J7,GQY1XT001ECLTL,GQY1XT001B9QB3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DA6U8"; +secondCol = "GQY1XT001DA6U8,GQY1XT001BRL2O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU13S"; +secondCol = "GQY1XT001CU13S,GQY1XT001DQUX9,GQY1XT001BINEA,GQY1XT001AHQCV,GQY1XT001DESZJ,GQY1XT001D2IDH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COMF5"; +secondCol = "GQY1XT001COMF5,GQY1XT001CPRE5,GQY1XT001A0KVS,GQY1XT001A5K0F,GQY1XT001EUKFO,GQY1XT001CUNZ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLMLV"; +secondCol = "GQY1XT001CLMLV,GQY1XT001DSQPO,GQY1XT001DDKTF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CK4OI"; +secondCol = "GQY1XT001CK4OI,GQY1XT001ENW9I,GQY1XT001CUQ0S,GQY1XT001BEH9I,GQY1XT001B5JJD,GQY1XT001C7B9F,GQY1XT001CJP97,GQY1XT001AH5SP,GQY1XT001CX0LB,GQY1XT001BNKLD,GQY1XT001B7D4R,GQY1XT001COOW7,GQY1XT001BY796,GQY1XT001A0BDB,GQY1XT001CIOXA,GQY1XT001BQH6J,GQY1XT001B1JXD,GQY1XT001AIEY4,GQY1XT001D1BQW,GQY1XT001C1I5C,GQY1XT001CN2QQ,GQY1XT001DHBHL,GQY1XT001ALJ0N,GQY1XT001EZ1M4,GQY1XT001AXB91,GQY1XT001A1Y5Y,GQY1XT001DXY3M,GQY1XT001AFEMD,GQY1XT001DS9NW,GQY1XT001A3KBZ,GQY1XT001CFD24,GQY1XT001A7PSN,GQY1XT001DHZAJ,GQY1XT001BVYDY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGNXV"; +secondCol = "GQY1XT001CGNXV,GQY1XT001D20KO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAUVT"; +secondCol = "GQY1XT001CAUVT,GQY1XT001BTNS1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRZLF"; +secondCol = "GQY1XT001BRZLF,GQY1XT001AMHDV,GQY1XT001BGSWT,GQY1XT001DREQG,GQY1XT001EXBKV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNGMO"; +secondCol = "GQY1XT001BNGMO,GQY1XT001CZ2VV,GQY1XT001A1WDT,GQY1XT001B8TJJ,GQY1XT001DXNXI,GQY1XT001AV02F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLEL1"; +secondCol = "GQY1XT001BLEL1,GQY1XT001AJWXQ,GQY1XT001E0ZEH,GQY1XT001AH8DK,GQY1XT001AKY5X,GQY1XT001A5Z7K,GQY1XT001EC0GC,GQY1XT001CQJLK,GQY1XT001BSI02,GQY1XT001ENTJR,GQY1XT001A1VV9,GQY1XT001E1R8W,GQY1XT001ESFAC,GQY1XT001DZQ07,GQY1XT001AMMN7,GQY1XT001A12YA,GQY1XT001EOBCJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI8Q8"; +secondCol = "GQY1XT001BI8Q8,GQY1XT001EYDB9,GQY1XT001D8ESZ,GQY1XT001CEMG9,GQY1XT001A7NF9,GQY1XT001EYHDK,GQY1XT001CGXQM,GQY1XT001CCLON,GQY1XT001CZ8KY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGINZ"; +secondCol = "GQY1XT001BGINZ,GQY1XT001ETQBC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAFIL"; +secondCol = "GQY1XT001BAFIL,GQY1XT001DEUR4,GQY1XT001DEFS3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BADAL"; +secondCol = "GQY1XT001BADAL,GQY1XT001BWLIQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9YU3"; +secondCol = "GQY1XT001B9YU3,GQY1XT001CTP9Q,GQY1XT001A3VB3,GQY1XT001BWXZO,GQY1XT001A70D5,GQY1XT001CA0K3,GQY1XT001BYMUM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9LVE"; +secondCol = "GQY1XT001B9LVE,GQY1XT001DLRR3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7LFF"; +secondCol = "GQY1XT001B7LFF,GQY1XT001A5YTB,GQY1XT001CVD8C,GQY1XT001AY49I,GQY1XT001AD0AD,GQY1XT001CJKMC,GQY1XT001A6K02,GQY1XT001D5WBZ,GQY1XT001C55CH,GQY1XT001C6OD8,GQY1XT001CTQLT,GQY1XT001EK966,GQY1XT001EDPVH,GQY1XT001EGZIL,GQY1XT001CRS3Y,GQY1XT001CFLLB,GQY1XT001BXPT9,GQY1XT001BQNV7,GQY1XT001B0XG8,GQY1XT001CBWU9,GQY1XT001ASWTS,GQY1XT001BUSQD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVZNJ"; +secondCol = "GQY1XT001AVZNJ,GQY1XT001EKYM5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALAP8"; +secondCol = "GQY1XT001ALAP8,GQY1XT001DZ8UB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AK5P4"; +secondCol = "GQY1XT001AK5P4,GQY1XT001AYAMS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A44RE"; +secondCol = "GQY1XT001A44RE,GQY1XT001DI935,GQY1XT001EGZXO,GQY1XT001D68O6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A41BE"; +secondCol = "GQY1XT001A41BE,GQY1XT001DJF6H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYW01"; +secondCol = "GQY1XT001EYW01,GQY1XT001DMN7Q,GQY1XT001CKB2R,GQY1XT001CI1DJ,GQY1XT001BTSCZ,GQY1XT001B19M3,GQY1XT001DD1T4,GQY1XT001EF6BX,GQY1XT001EEIN4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EY2DY"; +secondCol = "GQY1XT001EY2DY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXARN"; +secondCol = "GQY1XT001EXARN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX4SQ"; +secondCol = "GQY1XT001EX4SQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWW6P"; +secondCol = "GQY1XT001EWW6P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWMHC"; +secondCol = "GQY1XT001EWMHC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVYE7"; +secondCol = "GQY1XT001EVYE7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVK6W"; +secondCol = "GQY1XT001EVK6W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVDLH"; +secondCol = "GQY1XT001EVDLH,GQY1XT001DJ37S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUNUL"; +secondCol = "GQY1XT001EUNUL,GQY1XT001BUX1B,GQY1XT001C1Y0W,GQY1XT001DBI4S,GQY1XT001CSM3R,GQY1XT001AIMCX,GQY1XT001B9O30"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUAHK"; +secondCol = "GQY1XT001EUAHK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETWIV"; +secondCol = "GQY1XT001ETWIV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETHDG"; +secondCol = "GQY1XT001ETHDG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ET3LN"; +secondCol = "GQY1XT001ET3LN,GQY1XT001ETYTC,GQY1XT001BSRZG,GQY1XT001B6T9B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ET2GC"; +secondCol = "GQY1XT001ET2GC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESW3T"; +secondCol = "GQY1XT001ESW3T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES5NN"; +secondCol = "GQY1XT001ES5NN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPGP5"; +secondCol = "GQY1XT001EPGP5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPEVX"; +secondCol = "GQY1XT001EPEVX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EO96Y"; +secondCol = "GQY1XT001EO96Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENU0Z"; +secondCol = "GQY1XT001ENU0Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EN3AH"; +secondCol = "GQY1XT001EN3AH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM72G"; +secondCol = "GQY1XT001EM72G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELD3K"; +secondCol = "GQY1XT001ELD3K,GQY1XT001B4AKU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELBY4"; +secondCol = "GQY1XT001ELBY4,GQY1XT001B2UOA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL950"; +secondCol = "GQY1XT001EL950,GQY1XT001C2QO5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL0JX"; +secondCol = "GQY1XT001EL0JX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK28K"; +secondCol = "GQY1XT001EK28K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJ1PO"; +secondCol = "GQY1XT001EJ1PO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EIXO1"; +secondCol = "GQY1XT001EIXO1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EITFI"; +secondCol = "GQY1XT001EITFI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EIQRA"; +secondCol = "GQY1XT001EIQRA,GQY1XT001DNBL8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI0LV"; +secondCol = "GQY1XT001EI0LV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGXAQ"; +secondCol = "GQY1XT001EGXAQ,GQY1XT001ARBVC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EF612"; +secondCol = "GQY1XT001EF612"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EF5T3"; +secondCol = "GQY1XT001EF5T3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDEJO"; +secondCol = "GQY1XT001EDEJO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDD2Q"; +secondCol = "GQY1XT001EDD2Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDCRZ"; +secondCol = "GQY1XT001EDCRZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED2KQ"; +secondCol = "GQY1XT001ED2KQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECP6K"; +secondCol = "GQY1XT001ECP6K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECKQ8"; +secondCol = "GQY1XT001ECKQ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBZGK"; +secondCol = "GQY1XT001EBZGK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBMY4"; +secondCol = "GQY1XT001EBMY4,GQY1XT001DA04X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBJEN"; +secondCol = "GQY1XT001EBJEN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAR1W"; +secondCol = "GQY1XT001EAR1W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAKA8"; +secondCol = "GQY1XT001EAKA8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAB4X"; +secondCol = "GQY1XT001EAB4X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E6HLG"; +secondCol = "GQY1XT001E6HLG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E5SDM"; +secondCol = "GQY1XT001E5SDM,GQY1XT001CT1CB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E5SA2"; +secondCol = "GQY1XT001E5SA2,GQY1XT001CCYAR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E46CM"; +secondCol = "GQY1XT001E46CM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E20HL"; +secondCol = "GQY1XT001E20HL,GQY1XT001B6Y02,GQY1XT001DKCEY,GQY1XT001C6W1S,GQY1XT001AXIL2,GQY1XT001DTIBP,GQY1XT001AWLDG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1M0P"; +secondCol = "GQY1XT001E1M0P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E15F4"; +secondCol = "GQY1XT001E15F4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0UJM"; +secondCol = "GQY1XT001E0UJM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZNGQ"; +secondCol = "GQY1XT001DZNGQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZEW1"; +secondCol = "GQY1XT001DZEW1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ8GV"; +secondCol = "GQY1XT001DZ8GV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ0KY"; +secondCol = "GQY1XT001DZ0KY,GQY1XT001B0KXD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY0CK"; +secondCol = "GQY1XT001DY0CK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWHYF"; +secondCol = "GQY1XT001DWHYF,GQY1XT001A2R89"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWDBA"; +secondCol = "GQY1XT001DWDBA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVNA6"; +secondCol = "GQY1XT001DVNA6,GQY1XT001CXBDS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVCOB"; +secondCol = "GQY1XT001DVCOB,GQY1XT001CNXZ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DV35L"; +secondCol = "GQY1XT001DV35L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUECS"; +secondCol = "GQY1XT001DUECS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU444"; +secondCol = "GQY1XT001DU444,GQY1XT001CKGOD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU3CY"; +secondCol = "GQY1XT001DU3CY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSCKH"; +secondCol = "GQY1XT001DSCKH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DS64R"; +secondCol = "GQY1XT001DS64R,GQY1XT001COR2A,GQY1XT001BR9RG,GQY1XT001AK0WO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRX66"; +secondCol = "GQY1XT001DRX66,GQY1XT001A2EFE,GQY1XT001DDWF9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRTLT"; +secondCol = "GQY1XT001DRTLT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRDE3"; +secondCol = "GQY1XT001DRDE3,GQY1XT001D2LMY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR8SK"; +secondCol = "GQY1XT001DR8SK,GQY1XT001ASM7W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQXNX"; +secondCol = "GQY1XT001DQXNX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQGHU"; +secondCol = "GQY1XT001DQGHU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPRCM"; +secondCol = "GQY1XT001DPRCM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNTMI"; +secondCol = "GQY1XT001DNTMI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNKEL"; +secondCol = "GQY1XT001DNKEL,GQY1XT001CISXE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMLLT"; +secondCol = "GQY1XT001DMLLT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLWAK"; +secondCol = "GQY1XT001DLWAK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL86Q"; +secondCol = "GQY1XT001DL86Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKH2H"; +secondCol = "GQY1XT001DKH2H,GQY1XT001D9YA3,GQY1XT001BW39Z,GQY1XT001BVZPF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJZXU"; +secondCol = "GQY1XT001DJZXU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJTQD"; +secondCol = "GQY1XT001DJTQD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJSTQ"; +secondCol = "GQY1XT001DJSTQ,GQY1XT001D2NFO,GQY1XT001EU8JQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJGVS"; +secondCol = "GQY1XT001DJGVS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIT11"; +secondCol = "GQY1XT001DIT11"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DI0XA"; +secondCol = "GQY1XT001DI0XA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHLN2"; +secondCol = "GQY1XT001DHLN2,GQY1XT001EP69D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGULU"; +secondCol = "GQY1XT001DGULU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFWED"; +secondCol = "GQY1XT001DFWED"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFKHN"; +secondCol = "GQY1XT001DFKHN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF84J"; +secondCol = "GQY1XT001DF84J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF1JP"; +secondCol = "GQY1XT001DF1JP,GQY1XT001DE3G8,GQY1XT001B84UP,GQY1XT001ELZ51,GQY1XT001EE34H,GQY1XT001CA1TZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDZ64"; +secondCol = "GQY1XT001DDZ64"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDYWL"; +secondCol = "GQY1XT001DDYWL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDUAP"; +secondCol = "GQY1XT001DDUAP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCOLP"; +secondCol = "GQY1XT001DCOLP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCECZ"; +secondCol = "GQY1XT001DCECZ,GQY1XT001CHVUO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCDRA"; +secondCol = "GQY1XT001DCDRA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC9ED"; +secondCol = "GQY1XT001DC9ED"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC57H"; +secondCol = "GQY1XT001DC57H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC2D4"; +secondCol = "GQY1XT001DC2D4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBXHE"; +secondCol = "GQY1XT001DBXHE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBI9W"; +secondCol = "GQY1XT001DBI9W,GQY1XT001EP8U7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAGYA"; +secondCol = "GQY1XT001DAGYA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D99ZR"; +secondCol = "GQY1XT001D99ZR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D91DA"; +secondCol = "GQY1XT001D91DA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8IRX"; +secondCol = "GQY1XT001D8IRX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8D82"; +secondCol = "GQY1XT001D8D82,GQY1XT001DSXL4,GQY1XT001CAZDD,GQY1XT001ARVSO,GQY1XT001AL54B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D71UW"; +secondCol = "GQY1XT001D71UW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6ZO3"; +secondCol = "GQY1XT001D6ZO3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6G48"; +secondCol = "GQY1XT001D6G48"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6CXP"; +secondCol = "GQY1XT001D6CXP,GQY1XT001CTJZ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6BVE"; +secondCol = "GQY1XT001D6BVE,GQY1XT001CG48B,GQY1XT001C0LCQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D685S"; +secondCol = "GQY1XT001D685S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D65FP"; +secondCol = "GQY1XT001D65FP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5NPT"; +secondCol = "GQY1XT001D5NPT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4OGY"; +secondCol = "GQY1XT001D4OGY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D44LT"; +secondCol = "GQY1XT001D44LT,GQY1XT001COTPD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D41V5"; +secondCol = "GQY1XT001D41V5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3GTN"; +secondCol = "GQY1XT001D3GTN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3FCE"; +secondCol = "GQY1XT001D3FCE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D35QL"; +secondCol = "GQY1XT001D35QL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2XVX"; +secondCol = "GQY1XT001D2XVX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D29U4"; +secondCol = "GQY1XT001D29U4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D20M4"; +secondCol = "GQY1XT001D20M4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1UIA"; +secondCol = "GQY1XT001D1UIA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1RMM"; +secondCol = "GQY1XT001D1RMM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D190O"; +secondCol = "GQY1XT001D190O,GQY1XT001EI6MG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1555"; +secondCol = "GQY1XT001D1555"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0VK0"; +secondCol = "GQY1XT001D0VK0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0SW9"; +secondCol = "GQY1XT001D0SW9,GQY1XT001BJ2WF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0KKO"; +secondCol = "GQY1XT001D0KKO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D059N"; +secondCol = "GQY1XT001D059N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZDP6"; +secondCol = "GQY1XT001CZDP6,GQY1XT001CSTOB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZD5D"; +secondCol = "GQY1XT001CZD5D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZ6YY"; +secondCol = "GQY1XT001CZ6YY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYV83"; +secondCol = "GQY1XT001CYV83"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYM11"; +secondCol = "GQY1XT001CYM11"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXU0W"; +secondCol = "GQY1XT001CXU0W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXAOY"; +secondCol = "GQY1XT001CXAOY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX782"; +secondCol = "GQY1XT001CX782"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWR6V"; +secondCol = "GQY1XT001CWR6V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWIZ7"; +secondCol = "GQY1XT001CWIZ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW6Y0"; +secondCol = "GQY1XT001CW6Y0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVXRA"; +secondCol = "GQY1XT001CVXRA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CV6D0"; +secondCol = "GQY1XT001CV6D0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUJ97"; +secondCol = "GQY1XT001CUJ97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUE16"; +secondCol = "GQY1XT001CUE16,GQY1XT001AVXJY,GQY1XT001ARP99"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU7PP"; +secondCol = "GQY1XT001CU7PP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU6OX"; +secondCol = "GQY1XT001CU6OX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSFEZ"; +secondCol = "GQY1XT001CSFEZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRSPD"; +secondCol = "GQY1XT001CRSPD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRPGT"; +secondCol = "GQY1XT001CRPGT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRDDY"; +secondCol = "GQY1XT001CRDDY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPIDA"; +secondCol = "GQY1XT001CPIDA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COYQ7"; +secondCol = "GQY1XT001COYQ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COVAB"; +secondCol = "GQY1XT001COVAB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO8VV"; +secondCol = "GQY1XT001CO8VV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO0K0"; +secondCol = "GQY1XT001CO0K0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNVA3"; +secondCol = "GQY1XT001CNVA3,GQY1XT001AXNI0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNJGA"; +secondCol = "GQY1XT001CNJGA,GQY1XT001A5QM4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMX16"; +secondCol = "GQY1XT001CMX16"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMV43"; +secondCol = "GQY1XT001CMV43"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMRMZ"; +secondCol = "GQY1XT001CMRMZ,GQY1XT001D4GZU,GQY1XT001C5YG2,GQY1XT001AJPWF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CML6P"; +secondCol = "GQY1XT001CML6P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLRD6"; +secondCol = "GQY1XT001CLRD6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKIUP"; +secondCol = "GQY1XT001CKIUP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKACU"; +secondCol = "GQY1XT001CKACU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIO6Z"; +secondCol = "GQY1XT001CIO6Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CINOS"; +secondCol = "GQY1XT001CINOS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIG4J"; +secondCol = "GQY1XT001CIG4J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CI3UJ"; +secondCol = "GQY1XT001CI3UJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHXQQ"; +secondCol = "GQY1XT001CHXQQ,GQY1XT001BF28M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH8ZD"; +secondCol = "GQY1XT001CH8ZD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGZI2"; +secondCol = "GQY1XT001CGZI2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGMGM"; +secondCol = "GQY1XT001CGMGM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFTZL"; +secondCol = "GQY1XT001CFTZL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEU3H"; +secondCol = "GQY1XT001CEU3H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CES55"; +secondCol = "GQY1XT001CES55"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CENGR"; +secondCol = "GQY1XT001CENGR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEHFU"; +secondCol = "GQY1XT001CEHFU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CE091"; +secondCol = "GQY1XT001CE091"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDWT4"; +secondCol = "GQY1XT001CDWT4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDMZ4"; +secondCol = "GQY1XT001CDMZ4,GQY1XT001B0DO9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDA2V"; +secondCol = "GQY1XT001CDA2V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCF82"; +secondCol = "GQY1XT001CCF82"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBCVJ"; +secondCol = "GQY1XT001CBCVJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAKVS"; +secondCol = "GQY1XT001CAKVS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CA3UA"; +secondCol = "GQY1XT001CA3UA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9V0H"; +secondCol = "GQY1XT001C9V0H,GQY1XT001AF1N0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8RQZ"; +secondCol = "GQY1XT001C8RQZ,GQY1XT001CO0NA,GQY1XT001AUS0U,GQY1XT001D2OYO,GQY1XT001EKKJ9,GQY1XT001BAKAG,GQY1XT001B8H6R,GQY1XT001DL32B,GQY1XT001A3402,GQY1XT001B3LCH,GQY1XT001CQXDP,GQY1XT001ETRLO,GQY1XT001BN5HA,GQY1XT001AQ5OI,GQY1XT001CIONA,GQY1XT001EB8G5,GQY1XT001EI3VF,GQY1XT001CZPOS,GQY1XT001CCWMC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C80S1"; +secondCol = "GQY1XT001C80S1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7PAI"; +secondCol = "GQY1XT001C7PAI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C61J8"; +secondCol = "GQY1XT001C61J8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5P4N"; +secondCol = "GQY1XT001C5P4N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5MQ7"; +secondCol = "GQY1XT001C5MQ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4S0G"; +secondCol = "GQY1XT001C4S0G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2WHP"; +secondCol = "GQY1XT001C2WHP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2KSO"; +secondCol = "GQY1XT001C2KSO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C23JD"; +secondCol = "GQY1XT001C23JD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1L1B"; +secondCol = "GQY1XT001C1L1B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1CJH"; +secondCol = "GQY1XT001C1CJH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1A4H"; +secondCol = "GQY1XT001C1A4H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C18EI"; +secondCol = "GQY1XT001C18EI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0EIP"; +secondCol = "GQY1XT001C0EIP,GQY1XT001EFEXW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C054B"; +secondCol = "GQY1XT001C054B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C02H7"; +secondCol = "GQY1XT001C02H7,GQY1XT001D0K7F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C01OE"; +secondCol = "GQY1XT001C01OE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZL9H"; +secondCol = "GQY1XT001BZL9H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYOHC"; +secondCol = "GQY1XT001BYOHC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY7Q5"; +secondCol = "GQY1XT001BY7Q5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY4XC"; +secondCol = "GQY1XT001BY4XC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY2VC"; +secondCol = "GQY1XT001BY2VC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWH5Q"; +secondCol = "GQY1XT001BWH5Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW5LP"; +secondCol = "GQY1XT001BW5LP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW0GJ"; +secondCol = "GQY1XT001BW0GJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVJKI"; +secondCol = "GQY1XT001BVJKI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVJ8N"; +secondCol = "GQY1XT001BVJ8N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVATR"; +secondCol = "GQY1XT001BVATR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV86B"; +secondCol = "GQY1XT001BV86B,GQY1XT001BGKMN,GQY1XT001CXW7O,GQY1XT001CHPWM,GQY1XT001A5TEQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUYF3"; +secondCol = "GQY1XT001BUYF3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUUF4"; +secondCol = "GQY1XT001BUUF4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTLTU"; +secondCol = "GQY1XT001BTLTU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BT9DZ"; +secondCol = "GQY1XT001BT9DZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSGSM"; +secondCol = "GQY1XT001BSGSM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRS3S"; +secondCol = "GQY1XT001BRS3S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRN8Y"; +secondCol = "GQY1XT001BRN8Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRIHM"; +secondCol = "GQY1XT001BRIHM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRBY0"; +secondCol = "GQY1XT001BRBY0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRB2B"; +secondCol = "GQY1XT001BRB2B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BR3TH"; +secondCol = "GQY1XT001BR3TH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPB9Y"; +secondCol = "GQY1XT001BPB9Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BP0GH"; +secondCol = "GQY1XT001BP0GH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOZ60"; +secondCol = "GQY1XT001BOZ60"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOTKM"; +secondCol = "GQY1XT001BOTKM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOCH0"; +secondCol = "GQY1XT001BOCH0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BO5AY"; +secondCol = "GQY1XT001BO5AY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BO26H"; +secondCol = "GQY1XT001BO26H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BO0VB"; +secondCol = "GQY1XT001BO0VB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMANE"; +secondCol = "GQY1XT001BMANE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJW91"; +secondCol = "GQY1XT001BJW91"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ5VY"; +secondCol = "GQY1XT001BJ5VY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIQ0Y"; +secondCol = "GQY1XT001BIQ0Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI1VW"; +secondCol = "GQY1XT001BI1VW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI0RV"; +secondCol = "GQY1XT001BI0RV,GQY1XT001AF6IW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHY85"; +secondCol = "GQY1XT001BHY85,GQY1XT001AT6TZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHU11"; +secondCol = "GQY1XT001BHU11"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHQEM"; +secondCol = "GQY1XT001BHQEM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHK64"; +secondCol = "GQY1XT001BHK64"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH4GI"; +secondCol = "GQY1XT001BH4GI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGQGA"; +secondCol = "GQY1XT001BGQGA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BG448"; +secondCol = "GQY1XT001BG448,GQY1XT001CN6VS,GQY1XT001B8P92,GQY1XT001C6XDF,GQY1XT001DBKJS,GQY1XT001D8DXA,GQY1XT001A66NJ,GQY1XT001DC4JN,GQY1XT001CA2VP,GQY1XT001ES25U,GQY1XT001B69QK,GQY1XT001EF7O8,GQY1XT001EEHY4,GQY1XT001BOYX9,GQY1XT001A5EWN,GQY1XT001B875K,GQY1XT001CUR6I,GQY1XT001AW2UP,GQY1XT001EBSO0,GQY1XT001D1X60,GQY1XT001EQD2R,GQY1XT001E3VWM,GQY1XT001CYJER,GQY1XT001BDQ7H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFPNU"; +secondCol = "GQY1XT001BFPNU,GQY1XT001AERPZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEKGR"; +secondCol = "GQY1XT001BEKGR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCOC6"; +secondCol = "GQY1XT001BCOC6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC1WQ"; +secondCol = "GQY1XT001BC1WQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB3UG"; +secondCol = "GQY1XT001BB3UG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8ZUW"; +secondCol = "GQY1XT001B8ZUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B899B"; +secondCol = "GQY1XT001B899B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B874Y"; +secondCol = "GQY1XT001B874Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B81VY"; +secondCol = "GQY1XT001B81VY,GQY1XT001C95O0,GQY1XT001AYIDF,GQY1XT001DL9BR,GQY1XT001CLVLJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7U5I"; +secondCol = "GQY1XT001B7U5I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7CX2"; +secondCol = "GQY1XT001B7CX2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6Y9C"; +secondCol = "GQY1XT001B6Y9C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6PJY"; +secondCol = "GQY1XT001B6PJY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5Y52"; +secondCol = "GQY1XT001B5Y52"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5VPJ"; +secondCol = "GQY1XT001B5VPJ,GQY1XT001BXRH5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5S1X"; +secondCol = "GQY1XT001B5S1X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5GOX"; +secondCol = "GQY1XT001B5GOX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4XAQ"; +secondCol = "GQY1XT001B4XAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4D1T"; +secondCol = "GQY1XT001B4D1T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4056"; +secondCol = "GQY1XT001B4056"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3J69"; +secondCol = "GQY1XT001B3J69"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2Z07"; +secondCol = "GQY1XT001B2Z07"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2UVD"; +secondCol = "GQY1XT001B2UVD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B264Y"; +secondCol = "GQY1XT001B264Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0B7S"; +secondCol = "GQY1XT001B0B7S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B02KN"; +secondCol = "GQY1XT001B02KN,GQY1XT001BNP95"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZEJX"; +secondCol = "GQY1XT001AZEJX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ91Q"; +secondCol = "GQY1XT001AZ91Q,GQY1XT001AMEY5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXWID"; +secondCol = "GQY1XT001AXWID"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW4XW"; +secondCol = "GQY1XT001AW4XW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV5RM"; +secondCol = "GQY1XT001AV5RM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUZKM"; +secondCol = "GQY1XT001AUZKM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUA36"; +secondCol = "GQY1XT001AUA36"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU7GQ"; +secondCol = "GQY1XT001AU7GQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU0ZO"; +secondCol = "GQY1XT001AU0ZO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU0YX"; +secondCol = "GQY1XT001AU0YX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATICR"; +secondCol = "GQY1XT001ATICR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATCH2"; +secondCol = "GQY1XT001ATCH2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AT098"; +secondCol = "GQY1XT001AT098,GQY1XT001DP1K1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASHNW"; +secondCol = "GQY1XT001ASHNW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQAE2"; +secondCol = "GQY1XT001AQAE2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APT2N"; +secondCol = "GQY1XT001APT2N,GQY1XT001BSR8P,GQY1XT001AS1VR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APR6R"; +secondCol = "GQY1XT001APR6R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APLM5"; +secondCol = "GQY1XT001APLM5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP3ZY"; +secondCol = "GQY1XT001AP3ZY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOT7K"; +secondCol = "GQY1XT001AOT7K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOB8V"; +secondCol = "GQY1XT001AOB8V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO39T"; +secondCol = "GQY1XT001AO39T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANM2O"; +secondCol = "GQY1XT001ANM2O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANEPB"; +secondCol = "GQY1XT001ANEPB,GQY1XT001BY0MM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN52Q"; +secondCol = "GQY1XT001AN52Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMT3B"; +secondCol = "GQY1XT001AMT3B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMFIX"; +secondCol = "GQY1XT001AMFIX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALORM"; +secondCol = "GQY1XT001ALORM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALJR9"; +secondCol = "GQY1XT001ALJR9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AL7YW"; +secondCol = "GQY1XT001AL7YW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKDWB"; +secondCol = "GQY1XT001AKDWB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJW7Z"; +secondCol = "GQY1XT001AJW7Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJMTR"; +secondCol = "GQY1XT001AJMTR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJCQ5"; +secondCol = "GQY1XT001AJCQ5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ4TJ"; +secondCol = "GQY1XT001AJ4TJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AI9J5"; +secondCol = "GQY1XT001AI9J5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGTZA"; +secondCol = "GQY1XT001AGTZA,GQY1XT001A89XS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFNJT"; +secondCol = "GQY1XT001AFNJT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFCLT"; +secondCol = "GQY1XT001AFCLT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9Q52"; +secondCol = "GQY1XT001A9Q52"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9KYL"; +secondCol = "GQY1XT001A9KYL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9094"; +secondCol = "GQY1XT001A9094"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8IDN"; +secondCol = "GQY1XT001A8IDN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8AXM"; +secondCol = "GQY1XT001A8AXM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7E5Q"; +secondCol = "GQY1XT001A7E5Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6E93"; +secondCol = "GQY1XT001A6E93"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6BRC"; +secondCol = "GQY1XT001A6BRC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5J2H"; +secondCol = "GQY1XT001A5J2H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A59OZ"; +secondCol = "GQY1XT001A59OZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4Q0L"; +secondCol = "GQY1XT001A4Q0L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3WVS"; +secondCol = "GQY1XT001A3WVS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3WQR"; +secondCol = "GQY1XT001A3WQR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3TQ3"; +secondCol = "GQY1XT001A3TQ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2QK9"; +secondCol = "GQY1XT001A2QK9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1SOP"; +secondCol = "GQY1XT001A1SOP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1ONR"; +secondCol = "GQY1XT001A1ONR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1A4Q"; +secondCol = "GQY1XT001A1A4Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A12RU"; +secondCol = "GQY1XT001A12RU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVHT3"; +secondCol = "GQY1XT001EVHT3,GQY1XT001BV3UE,GQY1XT001C2FEX,GQY1XT001A7YQJ,GQY1XT001A0RH2,GQY1XT001CTWOB,GQY1XT001DILM2,GQY1XT001B40DU,GQY1XT001AQ6EQ,GQY1XT001DCC70,GQY1XT001D9XUQ,GQY1XT001D7SX1,GQY1XT001DJCGT,GQY1XT001D9RCI,GQY1XT001E0D0V,GQY1XT001DFHWQ,GQY1XT001BPMTN,GQY1XT001AEAW4,GQY1XT001EVS02,GQY1XT001D1K7U,GQY1XT001CLCI9,GQY1XT001CWVGN,GQY1XT001DET69,GQY1XT001C8JN2,GQY1XT001BIRFE,GQY1XT001ETP1G,GQY1XT001BU77G,GQY1XT001D1Z61,GQY1XT001E3SGJ,GQY1XT001CD5ET,GQY1XT001EHAGA,GQY1XT001A9YWU,GQY1XT001A4SQR,GQY1XT001BXIEX,GQY1XT001C9GYF,GQY1XT001EW2NO,GQY1XT001BTPOQ,GQY1XT001C8LBM,GQY1XT001EWIVX,GQY1XT001AGP69,GQY1XT001BOIT7,GQY1XT001ES9RY,GQY1XT001CX64O,GQY1XT001ECO9Z,GQY1XT001BULXO,GQY1XT001BOI7X,GQY1XT001BBVTG,GQY1XT001DGHQB,GQY1XT001D4U0V,GQY1XT001AFBDS,GQY1XT001CNXF9,GQY1XT001BL1R4,GQY1XT001C3789,GQY1XT001CNRW6,GQY1XT001D3DYO,GQY1XT001ELEHZ,GQY1XT001BD316,GQY1XT001B0RRZ,GQY1XT001ASPFE,GQY1XT001D6NG6,GQY1XT001CGOGG,GQY1XT001EFMY7,GQY1XT001BWNWN,GQY1XT001BLHDB,GQY1XT001E5GA3,GQY1XT001DREGR,GQY1XT001CFRAW,GQY1XT001B2F5X,GQY1XT001EZP8M,GQY1XT001BC067,GQY1XT001CQDPV,GQY1XT001DWS61,GQY1XT001B3ZWW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC1OQ"; +secondCol = "GQY1XT001BC1OQ,GQY1XT001AWVAE,GQY1XT001EZJ1J,GQY1XT001BD0RV,GQY1XT001B499P,GQY1XT001A0AGO,GQY1XT001ARFIS,GQY1XT001BIAGI,GQY1XT001D0T88,GQY1XT001EI2Z8,GQY1XT001AJMN1,GQY1XT001B6KP7,GQY1XT001EW5AY,GQY1XT001ALTF8,GQY1XT001CBJC3,GQY1XT001DRK3B,GQY1XT001EZUTT,GQY1XT001BGMUN,GQY1XT001DKLZF,GQY1XT001EN24N,GQY1XT001CEC2O,GQY1XT001B9UAC,GQY1XT001D5I2I,GQY1XT001DHQKZ,GQY1XT001DJB6W,GQY1XT001BKIJ0,GQY1XT001B1DXE,GQY1XT001CBYRT,GQY1XT001CZH4O,GQY1XT001DUCWG,GQY1XT001D81K8,GQY1XT001C6VGO,GQY1XT001AI86L,GQY1XT001AK4TP,GQY1XT001B21TQ,GQY1XT001A8N3M,GQY1XT001D9LYF,GQY1XT001D5QRX,GQY1XT001AJWAG,GQY1XT001A4DGI,GQY1XT001CERIT,GQY1XT001E2ZYQ,GQY1XT001DEQXK,GQY1XT001CNH55,GQY1XT001CIZO9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CV3PG"; +secondCol = "GQY1XT001CV3PG,GQY1XT001EHCIL,GQY1XT001CHZTV,GQY1XT001CF4Z7,GQY1XT001BSGP7,GQY1XT001BYPSQ,GQY1XT001A7TF8,GQY1XT001CC4XT,GQY1XT001DWHKL,GQY1XT001EVTKD,GQY1XT001A2NFS,GQY1XT001BSSQJ,GQY1XT001CJROT,GQY1XT001BZM4A,GQY1XT001AQST9,GQY1XT001BBHDP,GQY1XT001CYWJI,GQY1XT001A4VQR,GQY1XT001D6TOW,GQY1XT001BR16N,GQY1XT001A5WLN,GQY1XT001DY7NG,GQY1XT001EYKBU,GQY1XT001DB3AI,GQY1XT001DTVAY,GQY1XT001B31GG,GQY1XT001EP8GT,GQY1XT001A1YS3,GQY1XT001BSVXY,GQY1XT001BZ07X,GQY1XT001DK3HN,GQY1XT001CNLWD,GQY1XT001DESRE,GQY1XT001D2UNE,GQY1XT001CXAS0,GQY1XT001CG3ZL,GQY1XT001A9M17,GQY1XT001DD6JF,GQY1XT001EEJ25,GQY1XT001A4JQ3,GQY1XT001BXMV2,GQY1XT001CIB1N,GQY1XT001CZLBI,GQY1XT001D2EHD,GQY1XT001ET8J9,GQY1XT001BQBD8,GQY1XT001C4DDF,GQY1XT001DUTJF,GQY1XT001AI7HH,GQY1XT001AFQ14,GQY1XT001AEKBZ,GQY1XT001D26MR,GQY1XT001E28TT,GQY1XT001B655P,GQY1XT001EIK9C,GQY1XT001D7XH6,GQY1XT001ERVB9,GQY1XT001DN67S,GQY1XT001CRF5I,GQY1XT001CDKSX,GQY1XT001C5X5B,GQY1XT001AMHSY,GQY1XT001AKY88,GQY1XT001BFXJ8,GQY1XT001C7H1Z,GQY1XT001D3NFN,GQY1XT001EPTRK,GQY1XT001BTXR6,GQY1XT001EOPDU,GQY1XT001C781A,GQY1XT001BPT1H,GQY1XT001B69RH,GQY1XT001DTB2L,GQY1XT001AJAWH,GQY1XT001CQNX8,GQY1XT001EJHJ8,GQY1XT001B8VHD,GQY1XT001BERMM,GQY1XT001C1MCX,GQY1XT001DO3XP,GQY1XT001B3LHH,GQY1XT001EPDQT,GQY1XT001AU36E,GQY1XT001CD0VS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKP7A"; +secondCol = "GQY1XT001CKP7A,GQY1XT001CFGVH,GQY1XT001DKGGD,GQY1XT001EK0T3,GQY1XT001BH456,GQY1XT001DNWOA,GQY1XT001C29KO,GQY1XT001EGHO1,GQY1XT001D8LCB,GQY1XT001A13BN,GQY1XT001ELTIE,GQY1XT001A3GH3,GQY1XT001A8Z9F,GQY1XT001AVHK9,GQY1XT001CEIIQ,GQY1XT001D2Z5C,GQY1XT001C926L,GQY1XT001EE81Q,GQY1XT001AM6NE,GQY1XT001D66ON,GQY1XT001EZ7NC,GQY1XT001BM6SA,GQY1XT001EYWMW,GQY1XT001A8S5Z,GQY1XT001E3RVO,GQY1XT001EKKEW,GQY1XT001D3AWS,GQY1XT001C9XE5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4XF1"; +secondCol = "GQY1XT001A4XF1,GQY1XT001BDRKN,GQY1XT001EUK2C,GQY1XT001DVXSN,GQY1XT001CT4YV,GQY1XT001DXTLY,GQY1XT001DVZV4,GQY1XT001BUPQ1,GQY1XT001DF8Q5,GQY1XT001CL2T7,GQY1XT001CWXT9,GQY1XT001B4SXX,GQY1XT001C6NDT,GQY1XT001CASZJ,GQY1XT001DKVR2,GQY1XT001D2A56,GQY1XT001CT3NY,GQY1XT001DQWL7,GQY1XT001CEZNF,GQY1XT001D8N4L,GQY1XT001ELGYM,GQY1XT001ASJFS,GQY1XT001EAT79,GQY1XT001CS8PT,GQY1XT001B3EO4,GQY1XT001B4CG1,GQY1XT001DYUJ4,GQY1XT001BMHXZ,GQY1XT001CK2JI,GQY1XT001C65QJ,GQY1XT001BZYKN,GQY1XT001AMXMQ,GQY1XT001EDLQD,GQY1XT001ATCN3,GQY1XT001CSIE4,GQY1XT001DTTET,GQY1XT001DODML,GQY1XT001CKEEZ,GQY1XT001A71EM,GQY1XT001AX0YC,GQY1XT001ANZ73,GQY1XT001C73T4,GQY1XT001AKUIY,GQY1XT001E1RNS,GQY1XT001EEI1N,GQY1XT001BT79A,GQY1XT001D4OTQ,GQY1XT001ET68P,GQY1XT001B0EF6,GQY1XT001AUTAU,GQY1XT001CGHOK,GQY1XT001C4QUO,GQY1XT001AVZK4,GQY1XT001AJQFS,GQY1XT001C0N5L,GQY1XT001CUNZF,GQY1XT001DHDV0,GQY1XT001BWU30,GQY1XT001AO6M2,GQY1XT001B6SOA,GQY1XT001CWZNP,GQY1XT001CM950,GQY1XT001AMXJF,GQY1XT001ETJHR,GQY1XT001EGKMA,GQY1XT001DTLLS,GQY1XT001BAA7B,GQY1XT001CPWSO,GQY1XT001C5HMS,GQY1XT001AKQOD,GQY1XT001C82P8,GQY1XT001DVI1D,GQY1XT001D8AGW,GQY1XT001BCBZ0,GQY1XT001ECBXW,GQY1XT001DJ4NL,GQY1XT001EMEKK,GQY1XT001CWNFJ,GQY1XT001DHQJI,GQY1XT001B99W3,GQY1XT001ED991,GQY1XT001BXHVT,GQY1XT001BIP3L,GQY1XT001DO9R3,GQY1XT001BBAHE,GQY1XT001ENRYM,GQY1XT001DVMCN,GQY1XT001C46R8,GQY1XT001B26N7,GQY1XT001ECFQI,GQY1XT001BIYK5,GQY1XT001BZUXH,GQY1XT001DRVRS,GQY1XT001A2FOZ,GQY1XT001D2Y0G,GQY1XT001BUFRD,GQY1XT001A0UMH,GQY1XT001D5WS7,GQY1XT001A18M4,GQY1XT001DICO3,GQY1XT001DYNOT,GQY1XT001CV306,GQY1XT001A7PEQ,GQY1XT001CZSRK,GQY1XT001B0UFF,GQY1XT001DO078,GQY1XT001BT7L5,GQY1XT001B4TZ0,GQY1XT001DHGY2,GQY1XT001BZ161,GQY1XT001DOM8D,GQY1XT001ALA4Y,GQY1XT001CS3CN,GQY1XT001EK7BQ,GQY1XT001DQDVV,GQY1XT001DKLNV,GQY1XT001DKDFG,GQY1XT001DJGYC,GQY1XT001CU7BA,GQY1XT001CA8RT,GQY1XT001C6W6A,GQY1XT001A00NC,GQY1XT001EZDTY,GQY1XT001DKTBH,GQY1XT001CPSPJ,GQY1XT001AZLJI,GQY1XT001AFSE4,GQY1XT001AL0NL,GQY1XT001BQ97K,GQY1XT001EKCBG,GQY1XT001CCKQA,GQY1XT001BWTAE,GQY1XT001BIVPT,GQY1XT001BWBY4,GQY1XT001B6OO3,GQY1XT001CHBD3,GQY1XT001B4JIM,GQY1XT001AR0Y6,GQY1XT001A61CJ,GQY1XT001A7U3S,GQY1XT001BE3NZ,GQY1XT001ANU26,GQY1XT001DTP9A,GQY1XT001AQEYV,GQY1XT001A84LK,GQY1XT001EXU2H,GQY1XT001DWOZJ,GQY1XT001CZ49U,GQY1XT001D9EZK,GQY1XT001EHZ4N,GQY1XT001B0JZ5,GQY1XT001BALXF,GQY1XT001BKV04,GQY1XT001DIRCS,GQY1XT001E4EB4,GQY1XT001ALV0I,GQY1XT001DZWSK,GQY1XT001C8PJD,GQY1XT001CX0V8,GQY1XT001C4XKD,GQY1XT001EGG2V,GQY1XT001A5ZNB,GQY1XT001BIZ8F,GQY1XT001EL6JV,GQY1XT001ESRMG,GQY1XT001D0N5C,GQY1XT001A0HT9,GQY1XT001ECLIU,GQY1XT001B9VUB,GQY1XT001BZV0D,GQY1XT001CR3KO,GQY1XT001DW13F,GQY1XT001EECG7,GQY1XT001B2H92,GQY1XT001EYXZQ,GQY1XT001CP1GP,GQY1XT001DZ0HA,GQY1XT001DJF5U,GQY1XT001BAB40,GQY1XT001BIXNV,GQY1XT001EEDVS,GQY1XT001ARRHH,GQY1XT001EAO4P,GQY1XT001AZPCV,GQY1XT001B03DF,GQY1XT001DY2T1,GQY1XT001CDOTF,GQY1XT001CAH53,GQY1XT001BTZCO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBEPN"; +secondCol = "GQY1XT001CBEPN,GQY1XT001AIP2W,GQY1XT001AF7Z6,GQY1XT001BYX5R,GQY1XT001ELOVL,GQY1XT001DH9JD,GQY1XT001EQPKG,GQY1XT001BUNIH,GQY1XT001CQD4D,GQY1XT001BLD54,GQY1XT001C6STP,GQY1XT001B5WRI,GQY1XT001D3NSM,GQY1XT001C2HEX,GQY1XT001CWNCC,GQY1XT001CGL5K,GQY1XT001C0HD3,GQY1XT001DSLNF,GQY1XT001COTM7,GQY1XT001E0MB8,GQY1XT001DI2DR,GQY1XT001AJPE0,GQY1XT001A6N7U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVFWB"; +secondCol = "GQY1XT001CVFWB,GQY1XT001AHIWE,GQY1XT001CTUA6,GQY1XT001AEZHM,GQY1XT001CBP1V,GQY1XT001DHEA2,GQY1XT001BUT2Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CA4CP"; +secondCol = "GQY1XT001CA4CP,GQY1XT001CK548,GQY1XT001D5XYI,GQY1XT001AXL4R,GQY1XT001CQEW0,GQY1XT001DMOKH,GQY1XT001C8OXT,GQY1XT001DJMCF,GQY1XT001AS3H3,GQY1XT001CWV2B,GQY1XT001AGK5I,GQY1XT001CBE2W,GQY1XT001BV3H0,GQY1XT001BBDXF,GQY1XT001BMC93,GQY1XT001CZ6SP,GQY1XT001DT2CB,GQY1XT001BKAJW,GQY1XT001DEYTQ,GQY1XT001DD06D,GQY1XT001BCI2T,GQY1XT001CZELL,GQY1XT001CG0E7,GQY1XT001D5ABX,GQY1XT001EXRS9,GQY1XT001CJE1A,GQY1XT001B7D9Y,GQY1XT001C44HP,GQY1XT001A0AWX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYO88"; +secondCol = "GQY1XT001BYO88,GQY1XT001D51YW,GQY1XT001DCAWT,GQY1XT001DA2BW,GQY1XT001DLKVF,GQY1XT001C8LRN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQZ93"; +secondCol = "GQY1XT001BQZ93,GQY1XT001EKW9M,GQY1XT001ECTEL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJD55"; +secondCol = "GQY1XT001BJD55,GQY1XT001BVPZR,GQY1XT001C13Y8,GQY1XT001EU0U9,GQY1XT001COQ5G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5TIJ"; +secondCol = "GQY1XT001B5TIJ,GQY1XT001DBGCJ,GQY1XT001BGHI0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVQRK"; +secondCol = "GQY1XT001AVQRK,GQY1XT001DW5JL,GQY1XT001EES0A,GQY1XT001AMMJ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV8ZM"; +secondCol = "GQY1XT001AV8ZM,GQY1XT001BTIE1,GQY1XT001DFQ97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EROXS"; +secondCol = "GQY1XT001EROXS,GQY1XT001EPAO6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJWHQ"; +secondCol = "GQY1XT001EJWHQ,GQY1XT001B4VKO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJN8I"; +secondCol = "GQY1XT001EJN8I,GQY1XT001ED3XI,GQY1XT001D3V2M,GQY1XT001BE6OQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJGNG"; +secondCol = "GQY1XT001EJGNG,GQY1XT001CODST,GQY1XT001BQMNT,GQY1XT001CQHRH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFJ4B"; +secondCol = "GQY1XT001EFJ4B,GQY1XT001DNQ7M,GQY1XT001AYXG3,GQY1XT001A98KV,GQY1XT001DIUXF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECB3X"; +secondCol = "GQY1XT001ECB3X,GQY1XT001DELWE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAC3N"; +secondCol = "GQY1XT001EAC3N,GQY1XT001AJUI5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0PCI"; +secondCol = "GQY1XT001E0PCI,GQY1XT001BBKCJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR760"; +secondCol = "GQY1XT001DR760,GQY1XT001D0I33"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9PSL"; +secondCol = "GQY1XT001D9PSL,GQY1XT001AH401,GQY1XT001A90RY,GQY1XT001C296H,GQY1XT001E459D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9LQM"; +secondCol = "GQY1XT001D9LQM,GQY1XT001DKYBB,GQY1XT001D69MM,GQY1XT001EG4AT,GQY1XT001BYIIT,GQY1XT001E2G1Y,GQY1XT001E3JLG,GQY1XT001CFEFK,GQY1XT001AODZU,GQY1XT001C7LEA,GQY1XT001ETGMI,GQY1XT001AYGVC,GQY1XT001ECNMV,GQY1XT001BNFXQ,GQY1XT001B78F8,GQY1XT001E0UQ5,GQY1XT001A8ZUI,GQY1XT001BQ0MO,GQY1XT001DBKSI,GQY1XT001E1H14,GQY1XT001DNXZW,GQY1XT001E40CK,GQY1XT001CIBHU,GQY1XT001ENQSG,GQY1XT001CJJWY,GQY1XT001B8JTP,GQY1XT001AY2MF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0BXA"; +secondCol = "GQY1XT001D0BXA,GQY1XT001B2VFY,GQY1XT001EP55F,GQY1XT001EE0RQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSFK4"; +secondCol = "GQY1XT001CSFK4,GQY1XT001ERNSL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS9RH"; +secondCol = "GQY1XT001CS9RH,GQY1XT001CBJMP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNG65"; +secondCol = "GQY1XT001CNG65,GQY1XT001CB2GS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3Y4F"; +secondCol = "GQY1XT001C3Y4F,GQY1XT001CEJD1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C20JS"; +secondCol = "GQY1XT001C20JS,GQY1XT001DBCHR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXN5D"; +secondCol = "GQY1XT001BXN5D,GQY1XT001DJEFW,GQY1XT001CIZJ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVPBJ"; +secondCol = "GQY1XT001BVPBJ,GQY1XT001C8K56"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHQ0I"; +secondCol = "GQY1XT001BHQ0I,GQY1XT001EH3PY,GQY1XT001EE129"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD68A"; +secondCol = "GQY1XT001BD68A,GQY1XT001CI308,GQY1XT001ALDI5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD5WD"; +secondCol = "GQY1XT001BD5WD,GQY1XT001APXFB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAM0T"; +secondCol = "GQY1XT001BAM0T,GQY1XT001DB0VA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1Z38"; +secondCol = "GQY1XT001B1Z38,GQY1XT001CYXQM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHFN5"; +secondCol = "GQY1XT001AHFN5,GQY1XT001BMANN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A96BG"; +secondCol = "GQY1XT001A96BG,GQY1XT001BJMFL,GQY1XT001AJTYS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A37W3"; +secondCol = "GQY1XT001A37W3,GQY1XT001EXONJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZSGA"; +secondCol = "GQY1XT001EZSGA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXW1N"; +secondCol = "GQY1XT001EXW1N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXH2J"; +secondCol = "GQY1XT001EXH2J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXGNL"; +secondCol = "GQY1XT001EXGNL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX06G"; +secondCol = "GQY1XT001EX06G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWF9Y"; +secondCol = "GQY1XT001EWF9Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EW08O"; +secondCol = "GQY1XT001EW08O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVBLO"; +secondCol = "GQY1XT001EVBLO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUDD8"; +secondCol = "GQY1XT001EUDD8,GQY1XT001AGTV5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETQFN"; +secondCol = "GQY1XT001ETQFN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESRP4"; +secondCol = "GQY1XT001ESRP4,GQY1XT001BHGL8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ER70P"; +secondCol = "GQY1XT001ER70P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ER69B"; +secondCol = "GQY1XT001ER69B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQC7D"; +secondCol = "GQY1XT001EQC7D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EP7ZP"; +secondCol = "GQY1XT001EP7ZP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOV2A"; +secondCol = "GQY1XT001EOV2A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOFW7"; +secondCol = "GQY1XT001EOFW7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENVYC"; +secondCol = "GQY1XT001ENVYC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMTPI"; +secondCol = "GQY1XT001EMTPI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMGX3"; +secondCol = "GQY1XT001EMGX3,GQY1XT001EJSOF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM07L"; +secondCol = "GQY1XT001EM07L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELLXI"; +secondCol = "GQY1XT001ELLXI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELBS5"; +secondCol = "GQY1XT001ELBS5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL25N"; +secondCol = "GQY1XT001EL25N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKYBD"; +secondCol = "GQY1XT001EKYBD,GQY1XT001DEYNR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK5N6"; +secondCol = "GQY1XT001EK5N6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJPJY"; +secondCol = "GQY1XT001EJPJY,GQY1XT001BCPH1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJLS1"; +secondCol = "GQY1XT001EJLS1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI6M7"; +secondCol = "GQY1XT001EI6M7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI1UI"; +secondCol = "GQY1XT001EI1UI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH7V8"; +secondCol = "GQY1XT001EH7V8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG39J"; +secondCol = "GQY1XT001EG39J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFORW"; +secondCol = "GQY1XT001EFORW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFMJE"; +secondCol = "GQY1XT001EFMJE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EF6C6"; +secondCol = "GQY1XT001EF6C6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEYEJ"; +secondCol = "GQY1XT001EEYEJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEGJS"; +secondCol = "GQY1XT001EEGJS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDXO4"; +secondCol = "GQY1XT001EDXO4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECYZV"; +secondCol = "GQY1XT001ECYZV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECO3L"; +secondCol = "GQY1XT001ECO3L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC680"; +secondCol = "GQY1XT001EC680"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBV6C"; +secondCol = "GQY1XT001EBV6C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAZSN"; +secondCol = "GQY1XT001EAZSN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAZPN"; +secondCol = "GQY1XT001EAZPN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAXU4"; +secondCol = "GQY1XT001EAXU4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA66J"; +secondCol = "GQY1XT001EA66J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA1KP"; +secondCol = "GQY1XT001EA1KP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1UQP"; +secondCol = "GQY1XT001E1UQP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E18R9"; +secondCol = "GQY1XT001E18R9,GQY1XT001CF2IN,GQY1XT001A8OBL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E11J6"; +secondCol = "GQY1XT001E11J6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZFOE"; +secondCol = "GQY1XT001DZFOE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ7T4"; +secondCol = "GQY1XT001DZ7T4,GQY1XT001CE3WH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYMWW"; +secondCol = "GQY1XT001DYMWW,GQY1XT001AULPH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXVZE"; +secondCol = "GQY1XT001DXVZE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXOHI"; +secondCol = "GQY1XT001DXOHI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXF3E"; +secondCol = "GQY1XT001DXF3E,GQY1XT001B328N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX6EC"; +secondCol = "GQY1XT001DX6EC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWP39"; +secondCol = "GQY1XT001DWP39"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVUS5"; +secondCol = "GQY1XT001DVUS5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRVRB"; +secondCol = "GQY1XT001DRVRB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRPT7"; +secondCol = "GQY1XT001DRPT7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR86K"; +secondCol = "GQY1XT001DR86K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ0O7"; +secondCol = "GQY1XT001DQ0O7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPPPW"; +secondCol = "GQY1XT001DPPPW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPO3P"; +secondCol = "GQY1XT001DPO3P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DP5ZJ"; +secondCol = "GQY1XT001DP5ZJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOST9"; +secondCol = "GQY1XT001DOST9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DONIK"; +secondCol = "GQY1XT001DONIK,GQY1XT001B9QH5,GQY1XT001BD6H0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOCNR"; +secondCol = "GQY1XT001DOCNR,GQY1XT001DR4R5,GQY1XT001CY4EV,GQY1XT001CX6Q7,GQY1XT001B70KF,GQY1XT001C6IH0,GQY1XT001C51NS,GQY1XT001BE3UK,GQY1XT001CFAFQ,GQY1XT001E23TC,GQY1XT001A8Y8M,GQY1XT001EFSCU,GQY1XT001BLANC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DO0R3"; +secondCol = "GQY1XT001DO0R3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNSLC"; +secondCol = "GQY1XT001DNSLC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMF03"; +secondCol = "GQY1XT001DMF03,GQY1XT001CHEXE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLAEE"; +secondCol = "GQY1XT001DLAEE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL079"; +secondCol = "GQY1XT001DL079"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKNZ2"; +secondCol = "GQY1XT001DKNZ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKNON"; +secondCol = "GQY1XT001DKNON"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJXKJ"; +secondCol = "GQY1XT001DJXKJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DINZJ"; +secondCol = "GQY1XT001DINZJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHTB1"; +secondCol = "GQY1XT001DHTB1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH92M"; +secondCol = "GQY1XT001DH92M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH8CG"; +secondCol = "GQY1XT001DH8CG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF3CS"; +secondCol = "GQY1XT001DF3CS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEFEX"; +secondCol = "GQY1XT001DEFEX,GQY1XT001AH7QJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DE9CC"; +secondCol = "GQY1XT001DE9CC,GQY1XT001DALRB,GQY1XT001D4IKG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDNR5"; +secondCol = "GQY1XT001DDNR5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDE64"; +secondCol = "GQY1XT001DDE64"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDALJ"; +secondCol = "GQY1XT001DDALJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCVNJ"; +secondCol = "GQY1XT001DCVNJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCQHM"; +secondCol = "GQY1XT001DCQHM,GQY1XT001AQ13O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCI72"; +secondCol = "GQY1XT001DCI72"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCCEH"; +secondCol = "GQY1XT001DCCEH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC1XU"; +secondCol = "GQY1XT001DC1XU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAEXS"; +secondCol = "GQY1XT001DAEXS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9C0M"; +secondCol = "GQY1XT001D9C0M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9196"; +secondCol = "GQY1XT001D9196"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D768K"; +secondCol = "GQY1XT001D768K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D73IR"; +secondCol = "GQY1XT001D73IR,GQY1XT001A87H2,GQY1XT001EWZUH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6H9H"; +secondCol = "GQY1XT001D6H9H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D61WR"; +secondCol = "GQY1XT001D61WR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D61AN"; +secondCol = "GQY1XT001D61AN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5U9U"; +secondCol = "GQY1XT001D5U9U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5BKZ"; +secondCol = "GQY1XT001D5BKZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4OH9"; +secondCol = "GQY1XT001D4OH9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4MLK"; +secondCol = "GQY1XT001D4MLK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3I8P"; +secondCol = "GQY1XT001D3I8P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3A2N"; +secondCol = "GQY1XT001D3A2N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D39GQ"; +secondCol = "GQY1XT001D39GQ,GQY1XT001BUFOB,GQY1XT001EYZ41,GQY1XT001C2UB3,GQY1XT001D5KV2,GQY1XT001DHPU2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2OKK"; +secondCol = "GQY1XT001D2OKK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1TL6"; +secondCol = "GQY1XT001D1TL6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1QQZ"; +secondCol = "GQY1XT001D1QQZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1I3B"; +secondCol = "GQY1XT001D1I3B,GQY1XT001A1HF6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0WF6"; +secondCol = "GQY1XT001D0WF6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0NMQ"; +secondCol = "GQY1XT001D0NMQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZE5B"; +secondCol = "GQY1XT001CZE5B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZ9U1"; +secondCol = "GQY1XT001CZ9U1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYYLW"; +secondCol = "GQY1XT001CYYLW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYVZR"; +secondCol = "GQY1XT001CYVZR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXZ3M"; +secondCol = "GQY1XT001CXZ3M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXL4B"; +secondCol = "GQY1XT001CXL4B,GQY1XT001CRBEK,GQY1XT001AYNUM,GQY1XT001AGTP0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWJP3"; +secondCol = "GQY1XT001CWJP3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW27H"; +secondCol = "GQY1XT001CW27H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVKWG"; +secondCol = "GQY1XT001CVKWG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVGUG"; +secondCol = "GQY1XT001CVGUG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTZ1C"; +secondCol = "GQY1XT001CTZ1C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS7SI"; +secondCol = "GQY1XT001CS7SI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS7KX"; +secondCol = "GQY1XT001CS7KX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS736"; +secondCol = "GQY1XT001CS736"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRZXT"; +secondCol = "GQY1XT001CRZXT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRNDK"; +secondCol = "GQY1XT001CRNDK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRM3D"; +secondCol = "GQY1XT001CRM3D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPMSQ"; +secondCol = "GQY1XT001CPMSQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPHCR"; +secondCol = "GQY1XT001CPHCR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN67L"; +secondCol = "GQY1XT001CN67L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN3YQ"; +secondCol = "GQY1XT001CN3YQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMILT"; +secondCol = "GQY1XT001CMILT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLZ2E"; +secondCol = "GQY1XT001CLZ2E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLELR"; +secondCol = "GQY1XT001CLELR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKOMV"; +secondCol = "GQY1XT001CKOMV,GQY1XT001D01FL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CK9DQ"; +secondCol = "GQY1XT001CK9DQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJX38"; +secondCol = "GQY1XT001CJX38"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIZ7Q"; +secondCol = "GQY1XT001CIZ7Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIROP"; +secondCol = "GQY1XT001CIROP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIP8X"; +secondCol = "GQY1XT001CIP8X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CI21F"; +secondCol = "GQY1XT001CI21F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGPLI"; +secondCol = "GQY1XT001CGPLI,GQY1XT001E1CLB,GQY1XT001CDNPQ,GQY1XT001CXPPX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFP5W"; +secondCol = "GQY1XT001CFP5W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFMGK"; +secondCol = "GQY1XT001CFMGK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFADH"; +secondCol = "GQY1XT001CFADH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CF6LR"; +secondCol = "GQY1XT001CF6LR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CF37K"; +secondCol = "GQY1XT001CF37K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEXMY"; +secondCol = "GQY1XT001CEXMY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CC5UW"; +secondCol = "GQY1XT001CC5UW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBOLF"; +secondCol = "GQY1XT001CBOLF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CB4GZ"; +secondCol = "GQY1XT001CB4GZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAAJI"; +secondCol = "GQY1XT001CAAJI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9V9V"; +secondCol = "GQY1XT001C9V9V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C99RM"; +secondCol = "GQY1XT001C99RM,GQY1XT001B11Q0,GQY1XT001DBJQW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8NWP"; +secondCol = "GQY1XT001C8NWP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8I85"; +secondCol = "GQY1XT001C8I85"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7QEH"; +secondCol = "GQY1XT001C7QEH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6TKL"; +secondCol = "GQY1XT001C6TKL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6R9H"; +secondCol = "GQY1XT001C6R9H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5WDQ"; +secondCol = "GQY1XT001C5WDQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5QY5"; +secondCol = "GQY1XT001C5QY5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5NG3"; +secondCol = "GQY1XT001C5NG3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5M1V"; +secondCol = "GQY1XT001C5M1V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5M0Q"; +secondCol = "GQY1XT001C5M0Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5B0O"; +secondCol = "GQY1XT001C5B0O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3H6L"; +secondCol = "GQY1XT001C3H6L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2UBP"; +secondCol = "GQY1XT001C2UBP,GQY1XT001AYG37"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2PYQ"; +secondCol = "GQY1XT001C2PYQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C221X"; +secondCol = "GQY1XT001C221X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1EYP"; +secondCol = "GQY1XT001C1EYP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C16TB"; +secondCol = "GQY1XT001C16TB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0OMN"; +secondCol = "GQY1XT001C0OMN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C00MG"; +secondCol = "GQY1XT001C00MG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZCH8"; +secondCol = "GQY1XT001BZCH8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYU6O"; +secondCol = "GQY1XT001BYU6O,GQY1XT001AHPB1,GQY1XT001A96RM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYF9U"; +secondCol = "GQY1XT001BYF9U,GQY1XT001BJ7EM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY8RG"; +secondCol = "GQY1XT001BY8RG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXWIR"; +secondCol = "GQY1XT001BXWIR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXHAR"; +secondCol = "GQY1XT001BXHAR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWH3N"; +secondCol = "GQY1XT001BWH3N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW3VD"; +secondCol = "GQY1XT001BW3VD,GQY1XT001A5Q2F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVV4N"; +secondCol = "GQY1XT001BVV4N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVRGQ"; +secondCol = "GQY1XT001BVRGQ,GQY1XT001DK70D,GQY1XT001EAGFC,GQY1XT001BB584,GQY1XT001DYZZQ,GQY1XT001CJVJA,GQY1XT001BY8VX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV1S2"; +secondCol = "GQY1XT001BV1S2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUHFQ"; +secondCol = "GQY1XT001BUHFQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BU854"; +secondCol = "GQY1XT001BU854"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRWKV"; +secondCol = "GQY1XT001BRWKV,GQY1XT001AOB8B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRG77"; +secondCol = "GQY1XT001BRG77"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQJ6A"; +secondCol = "GQY1XT001BQJ6A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQJ2K"; +secondCol = "GQY1XT001BQJ2K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQH3H"; +secondCol = "GQY1XT001BQH3H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQE0T"; +secondCol = "GQY1XT001BQE0T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ1IR"; +secondCol = "GQY1XT001BQ1IR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPXQV"; +secondCol = "GQY1XT001BPXQV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BP06R"; +secondCol = "GQY1XT001BP06R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOS3Q"; +secondCol = "GQY1XT001BOS3Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKUXJ"; +secondCol = "GQY1XT001BKUXJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKF8J"; +secondCol = "GQY1XT001BKF8J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJBFJ"; +secondCol = "GQY1XT001BJBFJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ17T"; +secondCol = "GQY1XT001BJ17T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BISR7"; +secondCol = "GQY1XT001BISR7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIS33"; +secondCol = "GQY1XT001BIS33"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI6HC"; +secondCol = "GQY1XT001BI6HC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH407"; +secondCol = "GQY1XT001BH407"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGM3L"; +secondCol = "GQY1XT001BGM3L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGE4C"; +secondCol = "GQY1XT001BGE4C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFVIT"; +secondCol = "GQY1XT001BFVIT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFPZ4"; +secondCol = "GQY1XT001BFPZ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFPG2"; +secondCol = "GQY1XT001BFPG2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF6A3"; +secondCol = "GQY1XT001BF6A3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BERPN"; +secondCol = "GQY1XT001BERPN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEJKR"; +secondCol = "GQY1XT001BEJKR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE3DR"; +secondCol = "GQY1XT001BE3DR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE160"; +secondCol = "GQY1XT001BE160"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDKOG"; +secondCol = "GQY1XT001BDKOG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD35A"; +secondCol = "GQY1XT001BD35A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCHZQ"; +secondCol = "GQY1XT001BCHZQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB5QV"; +secondCol = "GQY1XT001BB5QV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB3IM"; +secondCol = "GQY1XT001BB3IM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB2I1"; +secondCol = "GQY1XT001BB2I1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAE4D"; +secondCol = "GQY1XT001BAE4D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B82M4"; +secondCol = "GQY1XT001B82M4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7II3"; +secondCol = "GQY1XT001B7II3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B79XZ"; +secondCol = "GQY1XT001B79XZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4KMH"; +secondCol = "GQY1XT001B4KMH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4CWV"; +secondCol = "GQY1XT001B4CWV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3O5L"; +secondCol = "GQY1XT001B3O5L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3NK9"; +secondCol = "GQY1XT001B3NK9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3G81"; +secondCol = "GQY1XT001B3G81"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3DGI"; +secondCol = "GQY1XT001B3DGI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2XRI"; +secondCol = "GQY1XT001B2XRI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2X2X"; +secondCol = "GQY1XT001B2X2X,GQY1XT001AGWCH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1Q23"; +secondCol = "GQY1XT001B1Q23"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B198G"; +secondCol = "GQY1XT001B198G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B18RP"; +secondCol = "GQY1XT001B18RP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B125S"; +secondCol = "GQY1XT001B125S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0PAO"; +secondCol = "GQY1XT001B0PAO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYZV4"; +secondCol = "GQY1XT001AYZV4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AY9X7"; +secondCol = "GQY1XT001AY9X7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXWLP"; +secondCol = "GQY1XT001AXWLP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVOTP"; +secondCol = "GQY1XT001AVOTP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVHY2"; +secondCol = "GQY1XT001AVHY2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV0Z7"; +secondCol = "GQY1XT001AV0Z7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUAZ1"; +secondCol = "GQY1XT001AUAZ1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU8BF"; +secondCol = "GQY1XT001AU8BF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATTEW"; +secondCol = "GQY1XT001ATTEW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASJY7"; +secondCol = "GQY1XT001ASJY7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASGKK"; +secondCol = "GQY1XT001ASGKK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARJ5H"; +secondCol = "GQY1XT001ARJ5H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQ6RI"; +secondCol = "GQY1XT001AQ6RI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANHGU"; +secondCol = "GQY1XT001ANHGU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANAR9"; +secondCol = "GQY1XT001ANAR9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AML81"; +secondCol = "GQY1XT001AML81"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMF77"; +secondCol = "GQY1XT001AMF77"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALM9Y"; +secondCol = "GQY1XT001ALM9Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AL02A"; +secondCol = "GQY1XT001AL02A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKR2J"; +secondCol = "GQY1XT001AKR2J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKLZB"; +secondCol = "GQY1XT001AKLZB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJQ84"; +secondCol = "GQY1XT001AJQ84"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJA87"; +secondCol = "GQY1XT001AJA87"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ9NL"; +secondCol = "GQY1XT001AJ9NL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AH6WY"; +secondCol = "GQY1XT001AH6WY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGY0S"; +secondCol = "GQY1XT001AGY0S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF930"; +secondCol = "GQY1XT001AF930"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF1T5"; +secondCol = "GQY1XT001AF1T5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEDAY"; +secondCol = "GQY1XT001AEDAY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9X7Q"; +secondCol = "GQY1XT001A9X7Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9EON"; +secondCol = "GQY1XT001A9EON"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9C7P"; +secondCol = "GQY1XT001A9C7P,GQY1XT001DIS3V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7UQG"; +secondCol = "GQY1XT001A7UQG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7R0H"; +secondCol = "GQY1XT001A7R0H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7L8W"; +secondCol = "GQY1XT001A7L8W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7C1T"; +secondCol = "GQY1XT001A7C1T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5QIO"; +secondCol = "GQY1XT001A5QIO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A40A8"; +secondCol = "GQY1XT001A40A8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3XZV"; +secondCol = "GQY1XT001A3XZV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A38QD"; +secondCol = "GQY1XT001A38QD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2D3Z"; +secondCol = "GQY1XT001A2D3Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A21FJ"; +secondCol = "GQY1XT001A21FJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A21BT"; +secondCol = "GQY1XT001A21BT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1Q4W"; +secondCol = "GQY1XT001A1Q4W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1OWI"; +secondCol = "GQY1XT001A1OWI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0U24"; +secondCol = "GQY1XT001A0U24"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0CJ8"; +secondCol = "GQY1XT001A0CJ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A09FJ"; +secondCol = "GQY1XT001A09FJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A04J0"; +secondCol = "GQY1XT001A04J0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASJ0W"; +secondCol = "GQY1XT001ASJ0W,GQY1XT001DQHW3,GQY1XT001A5T8H,GQY1XT001BOTFT,GQY1XT001D6249,GQY1XT001E2HWV,GQY1XT001EEHFF,GQY1XT001DEDMZ,GQY1XT001BSMLW,GQY1XT001DO2YY,GQY1XT001BJQ3I,GQY1XT001CCDDZ,GQY1XT001AF6M3,GQY1XT001B2I07,GQY1XT001BEJL0,GQY1XT001CT526,GQY1XT001BEDN9,GQY1XT001BV6EL,GQY1XT001CTMC8,GQY1XT001A90YI,GQY1XT001E1X8D,GQY1XT001C9T6W,GQY1XT001C0DN3,GQY1XT001CFLDN,GQY1XT001C3XS5,GQY1XT001EULS1,GQY1XT001EI82C,GQY1XT001BAJXI,GQY1XT001C4KLS,GQY1XT001C3A9Z,GQY1XT001BGZQC,GQY1XT001B8XPW,GQY1XT001DIW5Z,GQY1XT001EK8OQ,GQY1XT001BH8X7,GQY1XT001DXGK4,GQY1XT001BKYEL,GQY1XT001D9WIH,GQY1XT001EYGLZ,GQY1XT001BS5CD,GQY1XT001CSFY9,GQY1XT001A6AF6,GQY1XT001BEDEM,GQY1XT001C539N,GQY1XT001CSGXL,GQY1XT001C7UEA,GQY1XT001A3FTV,GQY1XT001CBSCJ,GQY1XT001BRQWH,GQY1XT001D2IVO,GQY1XT001C5TZC,GQY1XT001CSHJX,GQY1XT001DTOGD,GQY1XT001EB48K,GQY1XT001DS9UU,GQY1XT001DSV6R,GQY1XT001DQQ7F,GQY1XT001BI64B,GQY1XT001DUMML,GQY1XT001B0XY4,GQY1XT001B8L3C,GQY1XT001CKTCT,GQY1XT001CPK7O,GQY1XT001AUEKT,GQY1XT001D6DOL,GQY1XT001BWHM3,GQY1XT001CUSVZ,GQY1XT001BKJ7W,GQY1XT001C91BD,GQY1XT001D4KL8,GQY1XT001C88O5,GQY1XT001A45WW,GQY1XT001ERNZ4,GQY1XT001CJYPJ,GQY1XT001DXTBK,GQY1XT001C09Z0,GQY1XT001C1FLJ,GQY1XT001EUORB,GQY1XT001BUO1G,GQY1XT001DI70A,GQY1XT001DJACQ,GQY1XT001EFD25,GQY1XT001B6XAZ,GQY1XT001DYPF0,GQY1XT001BGQ9U,GQY1XT001E09NJ,GQY1XT001A4O0C,GQY1XT001C62FN,GQY1XT001AOQOY,GQY1XT001BQDGF,GQY1XT001C8GPE,GQY1XT001EYZQX,GQY1XT001CLYJU,GQY1XT001A1EG0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZGV8"; +secondCol = "GQY1XT001EZGV8,GQY1XT001CEMAT,GQY1XT001DXGQV,GQY1XT001DAKRQ,GQY1XT001DWAG8,GQY1XT001BXVRE,GQY1XT001B7OMD,GQY1XT001DOGMN,GQY1XT001CDFQ1,GQY1XT001BI1IS,GQY1XT001D6Z13,GQY1XT001CFMXC,GQY1XT001B190I,GQY1XT001BKSBF,GQY1XT001DZPBC,GQY1XT001AJR8S,GQY1XT001BN7KZ,GQY1XT001EAQSE,GQY1XT001BKG0B,GQY1XT001AG9HV,GQY1XT001DD9WC,GQY1XT001DNLTH,GQY1XT001AFUFV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D11RT"; +secondCol = "GQY1XT001D11RT,GQY1XT001EXOE2,GQY1XT001EFXGP,GQY1XT001EGA2O,GQY1XT001BKXYV,GQY1XT001A8F06,GQY1XT001BWUG9,GQY1XT001D3WW1,GQY1XT001E26Z0,GQY1XT001BCDUK,GQY1XT001B1E36,GQY1XT001C8TZY,GQY1XT001DP7KN,GQY1XT001BDWZ3,GQY1XT001DLJIK,GQY1XT001E4QHI,GQY1XT001DGKL2,GQY1XT001D7T6D,GQY1XT001AYO7J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CABID"; +secondCol = "GQY1XT001CABID,GQY1XT001D8HMN,GQY1XT001DYN08,GQY1XT001CKK9P,GQY1XT001B8X5I,GQY1XT001C559B,GQY1XT001EDKVP,GQY1XT001CKIJV,GQY1XT001DMSIT,GQY1XT001CYF8X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AR262"; +secondCol = "GQY1XT001AR262,GQY1XT001E1OY8,GQY1XT001DSIWH,GQY1XT001EJ58G,GQY1XT001DOZ7R,GQY1XT001DO03Z,GQY1XT001BCHIE,GQY1XT001CNTG3,GQY1XT001B391O,GQY1XT001DH39A,GQY1XT001C62RS,GQY1XT001DF512,GQY1XT001D3XDO,GQY1XT001EI6KA,GQY1XT001AXWZX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEZTO"; +secondCol = "GQY1XT001CEZTO,GQY1XT001DFGIY,GQY1XT001DLKTV,GQY1XT001C99VG,GQY1XT001D41GW,GQY1XT001B8TEO,GQY1XT001B1RQY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ET5U1"; +secondCol = "GQY1XT001ET5U1,GQY1XT001EQAV8,GQY1XT001EAP23,GQY1XT001B90CA,GQY1XT001CRZ47,GQY1XT001BJNG4,GQY1XT001A9SIN,GQY1XT001A35SR,GQY1XT001D0Z67,GQY1XT001BQ9DR,GQY1XT001D05QB,GQY1XT001DPK5I,GQY1XT001EQKZS,GQY1XT001B1V8Y,GQY1XT001ATYFI,GQY1XT001AQ8NT,GQY1XT001BPQH3,GQY1XT001CU24B,GQY1XT001DO3H3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPTUR"; +secondCol = "GQY1XT001DPTUR,GQY1XT001DD4DM,GQY1XT001AYXFJ,GQY1XT001DA080,GQY1XT001BV4IK,GQY1XT001D5DL4,GQY1XT001B2IO2,GQY1XT001AL6OL,GQY1XT001EA04H,GQY1XT001CJO7G,GQY1XT001D74PV,GQY1XT001BFUZN,GQY1XT001BFROK,GQY1XT001BFIS5,GQY1XT001EN1TA,GQY1XT001EIL2B,GQY1XT001D9YGU,GQY1XT001DB6K9,GQY1XT001C8TNC,GQY1XT001A57HS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D98L5"; +secondCol = "GQY1XT001D98L5,GQY1XT001CG5EO,GQY1XT001AJK0O,GQY1XT001BUSTS,GQY1XT001DG3G6,GQY1XT001CZC2V,GQY1XT001BSWEE,GQY1XT001A7PK4,GQY1XT001ESQ3R,GQY1XT001CC8N1,GQY1XT001EHS2H,GQY1XT001DWLQA,GQY1XT001DWLSQ,GQY1XT001DA0NT,GQY1XT001DI67I,GQY1XT001EXRGG,GQY1XT001AWC4B,GQY1XT001DHEPS,GQY1XT001AG3LS,GQY1XT001A79NV,GQY1XT001B41VS,GQY1XT001A7V45,GQY1XT001DQAIG,GQY1XT001BYTNU,GQY1XT001BRTR9,GQY1XT001EKPQA,GQY1XT001B8WA3,GQY1XT001DS64N,GQY1XT001ER4UP,GQY1XT001CWJVG,GQY1XT001EZFNT,GQY1XT001CFMFZ,GQY1XT001B767Q,GQY1XT001APD7N,GQY1XT001D9CRY,GQY1XT001CF3YE,GQY1XT001EQM84,GQY1XT001EQA2Z,GQY1XT001C8EU0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2WCH"; +secondCol = "GQY1XT001D2WCH,GQY1XT001EJ616,GQY1XT001AWZFJ,GQY1XT001AY1H0,GQY1XT001EJQKH,GQY1XT001EKYZC,GQY1XT001AYJRC,GQY1XT001D3OWK,GQY1XT001D8ZQC,GQY1XT001BTFWY,GQY1XT001B2B36,GQY1XT001B8WL0,GQY1XT001ANEEA,GQY1XT001EA222,GQY1XT001DYHX8,GQY1XT001ESUOA,GQY1XT001APX63,GQY1XT001ANLPS,GQY1XT001AP7GK,GQY1XT001B66ON,GQY1XT001CE7BI,GQY1XT001AH4IF,GQY1XT001A5DLQ,GQY1XT001BKGGK,GQY1XT001ESDP2,GQY1XT001EXHY3,GQY1XT001DWTKX,GQY1XT001EHYE5,GQY1XT001A2X4H,GQY1XT001CHM9K,GQY1XT001A35GR,GQY1XT001C6E8L,GQY1XT001B1A2W,GQY1XT001B45R4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCEJ4"; +secondCol = "GQY1XT001BCEJ4,GQY1XT001AI3F2,GQY1XT001C8FOU,GQY1XT001DF8YB,GQY1XT001E37MF,GQY1XT001A40K6,GQY1XT001BWGX6,GQY1XT001CQWST,GQY1XT001AMDHR,GQY1XT001EPUNN,GQY1XT001A2SLB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIM3N"; +secondCol = "GQY1XT001AIM3N,GQY1XT001ECVB8,GQY1XT001D7UO9,GQY1XT001E0EKM,GQY1XT001BEUJB,GQY1XT001E1MSH,GQY1XT001BWYAF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMIR6"; +secondCol = "GQY1XT001EMIR6,GQY1XT001DKCJI,GQY1XT001C1JP1,GQY1XT001EPD8P,GQY1XT001BD9PL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD3UK"; +secondCol = "GQY1XT001DD3UK,GQY1XT001ED9RO,GQY1XT001C9FLB,GQY1XT001EDDA2,GQY1XT001BI4Y4,GQY1XT001AYYLT,GQY1XT001BAGGU,GQY1XT001EK26E,GQY1XT001DUJ5Z,GQY1XT001DOSQ6,GQY1XT001CF21L,GQY1XT001BMLUK,GQY1XT001BMHV3,GQY1XT001AUU8K,GQY1XT001CYZLG,GQY1XT001BP5G1,GQY1XT001EFXRA,GQY1XT001DE8YQ,GQY1XT001CX0WC,GQY1XT001B1QDF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1UQN"; +secondCol = "GQY1XT001C1UQN,GQY1XT001EVIPV,GQY1XT001DX4OC,GQY1XT001BO2MY,GQY1XT001DYS4R,GQY1XT001BKEMU,GQY1XT001EIPX3,GQY1XT001EVR5U,GQY1XT001BTELR,GQY1XT001EWRUR,GQY1XT001E2DUD,GQY1XT001C26R4,GQY1XT001EREJ8,GQY1XT001D4SEF,GQY1XT001A35RB,GQY1XT001EORP3,GQY1XT001EODNG,GQY1XT001AJOKT,GQY1XT001BQPU7,GQY1XT001EESKC,GQY1XT001ANVZQ,GQY1XT001B25R3,GQY1XT001ESK5Q,GQY1XT001A2J58,GQY1XT001C9JUG,GQY1XT001CFY53,GQY1XT001CRTXA,GQY1XT001BVNW1,GQY1XT001BCR65,GQY1XT001BLQ3Y,GQY1XT001BK75I,GQY1XT001EUUOI,GQY1XT001C9J1L,GQY1XT001BIZL4,GQY1XT001B5R5W,GQY1XT001BXK2V,GQY1XT001BEF3T,GQY1XT001EJ0TQ,GQY1XT001BYHME,GQY1XT001BTT4O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV6MJ"; +secondCol = "GQY1XT001BV6MJ,GQY1XT001ED12E,GQY1XT001AXUPM,GQY1XT001A8N23,GQY1XT001A03UB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQTT3"; +secondCol = "GQY1XT001BQTT3,GQY1XT001D1PYV,GQY1XT001D5UEU,GQY1XT001DOGG3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B788F"; +secondCol = "GQY1XT001B788F,GQY1XT001A2R2L,GQY1XT001CI3CY,GQY1XT001BL9C1,GQY1XT001B61IH,GQY1XT001CEAD0,GQY1XT001AT9W2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXNP6"; +secondCol = "GQY1XT001AXNP6,GQY1XT001BNEAN,GQY1XT001BWHBI,GQY1XT001COWQY,GQY1XT001BXRAV,GQY1XT001B5XT5,GQY1XT001AKE6N,GQY1XT001CIX6M,GQY1XT001ERGD3,GQY1XT001AYVVU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVVIE"; +secondCol = "GQY1XT001EVVIE,GQY1XT001CZHEK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EN9CW"; +secondCol = "GQY1XT001EN9CW,GQY1XT001DXZVU,GQY1XT001DFERS,GQY1XT001CWVU7,GQY1XT001BZ8RH,GQY1XT001ETG5D,GQY1XT001ERCSE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGDVE"; +secondCol = "GQY1XT001EGDVE,GQY1XT001BGT6I,GQY1XT001DUVH7,GQY1XT001CX97E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECS7B"; +secondCol = "GQY1XT001ECS7B,GQY1XT001AXK8C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZZW5"; +secondCol = "GQY1XT001DZZW5,GQY1XT001CGWOM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXJXL"; +secondCol = "GQY1XT001DXJXL,GQY1XT001DZ7XF,GQY1XT001CCLXO,GQY1XT001A2D4N,GQY1XT001B2VJY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTTTZ"; +secondCol = "GQY1XT001DTTTZ,GQY1XT001EEQZ9,GQY1XT001C3Q2J,GQY1XT001EOV9A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN3FQ"; +secondCol = "GQY1XT001DN3FQ,GQY1XT001D8YPS,GQY1XT001B5IK0,GQY1XT001A7GRF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCSDO"; +secondCol = "GQY1XT001DCSDO,GQY1XT001DPHNZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4RB5"; +secondCol = "GQY1XT001D4RB5,GQY1XT001EURAY,GQY1XT001BU3CH,GQY1XT001ESIH7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZGJX"; +secondCol = "GQY1XT001CZGJX,GQY1XT001AKR1Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX3VR"; +secondCol = "GQY1XT001CX3VR,GQY1XT001BD30V,GQY1XT001EWYP8,GQY1XT001CDWAO,GQY1XT001CBCMN,GQY1XT001B8956,GQY1XT001CLU7R,GQY1XT001C6RZO,GQY1XT001BAWGE,GQY1XT001AWNWB,GQY1XT001AK7QU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COCAA"; +secondCol = "GQY1XT001COCAA,GQY1XT001C2DY9,GQY1XT001DC8XO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMOGO"; +secondCol = "GQY1XT001CMOGO,GQY1XT001A27J1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM5V7"; +secondCol = "GQY1XT001CM5V7,GQY1XT001DUPZJ,GQY1XT001D74VU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDHSC"; +secondCol = "GQY1XT001CDHSC,GQY1XT001BF0FW,GQY1XT001DFGVO,GQY1XT001B7BNU,GQY1XT001ETBK5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBZ32"; +secondCol = "GQY1XT001CBZ32,GQY1XT001C30OV,GQY1XT001BVDCU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAJ93"; +secondCol = "GQY1XT001CAJ93,GQY1XT001BMMWR,GQY1XT001CB0YZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9TUG"; +secondCol = "GQY1XT001C9TUG,GQY1XT001D9YJK,GQY1XT001ANHHC,GQY1XT001A31G9,GQY1XT001CV54W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9B6T"; +secondCol = "GQY1XT001C9B6T,GQY1XT001ELK06,GQY1XT001AQ3G1,GQY1XT001A2GLS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8S1G"; +secondCol = "GQY1XT001C8S1G,GQY1XT001C4Q6G,GQY1XT001DBH76"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6NLZ"; +secondCol = "GQY1XT001C6NLZ,GQY1XT001D9UBJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYYDK"; +secondCol = "GQY1XT001BYYDK,GQY1XT001DF4NQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY3AD"; +secondCol = "GQY1XT001BY3AD,GQY1XT001D4TY5,GQY1XT001A146I,GQY1XT001DMN8W,GQY1XT001CZPV5,GQY1XT001BKGZK,GQY1XT001D61GC,GQY1XT001CYPU5,GQY1XT001BSINA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRBLS"; +secondCol = "GQY1XT001BRBLS,GQY1XT001C9VGT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGUGL"; +secondCol = "GQY1XT001BGUGL,GQY1XT001AIWZ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBFUD"; +secondCol = "GQY1XT001BBFUD,GQY1XT001ECZ7U,GQY1XT001C2MMK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B956I"; +secondCol = "GQY1XT001B956I,GQY1XT001B4G56"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6JAI"; +secondCol = "GQY1XT001B6JAI,GQY1XT001BS5YX,GQY1XT001EQXQ0,GQY1XT001D21R5,GQY1XT001A8F36"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3ZEU"; +secondCol = "GQY1XT001B3ZEU,GQY1XT001CINXM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXPEJ"; +secondCol = "GQY1XT001AXPEJ,GQY1XT001BFGHP,GQY1XT001E1LWB,GQY1XT001AP6P9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALKX4"; +secondCol = "GQY1XT001ALKX4,GQY1XT001A5GYE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGK3C"; +secondCol = "GQY1XT001AGK3C,GQY1XT001DOMPO,GQY1XT001ET20K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG9FR"; +secondCol = "GQY1XT001AG9FR,GQY1XT001EO8Y2,GQY1XT001BL80Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZ1BL"; +secondCol = "GQY1XT001EZ1BL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYWBT"; +secondCol = "GQY1XT001EYWBT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYO8K"; +secondCol = "GQY1XT001EYO8K,GQY1XT001BQP5G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYKIH"; +secondCol = "GQY1XT001EYKIH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYG3J"; +secondCol = "GQY1XT001EYG3J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EY82N"; +secondCol = "GQY1XT001EY82N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EY1VL"; +secondCol = "GQY1XT001EY1VL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXXWG"; +secondCol = "GQY1XT001EXXWG,GQY1XT001D0D1B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXE4L"; +secondCol = "GQY1XT001EXE4L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EW1VI"; +secondCol = "GQY1XT001EW1VI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUARD"; +secondCol = "GQY1XT001EUARD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETWVR"; +secondCol = "GQY1XT001ETWVR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETW81"; +secondCol = "GQY1XT001ETW81"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETQPK"; +secondCol = "GQY1XT001ETQPK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQDIW"; +secondCol = "GQY1XT001EQDIW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQBK2"; +secondCol = "GQY1XT001EQBK2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPJJ2"; +secondCol = "GQY1XT001EPJJ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOQBJ"; +secondCol = "GQY1XT001EOQBJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOLRV"; +secondCol = "GQY1XT001EOLRV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EO54E"; +secondCol = "GQY1XT001EO54E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENXKK"; +secondCol = "GQY1XT001ENXKK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENSFC"; +secondCol = "GQY1XT001ENSFC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENMRU"; +secondCol = "GQY1XT001ENMRU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENMPD"; +secondCol = "GQY1XT001ENMPD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EN34T"; +secondCol = "GQY1XT001EN34T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EN0BU"; +secondCol = "GQY1XT001EN0BU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMN18"; +secondCol = "GQY1XT001EMN18"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EML96"; +secondCol = "GQY1XT001EML96"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM3U5"; +secondCol = "GQY1XT001EM3U5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM1H3"; +secondCol = "GQY1XT001EM1H3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM0QH"; +secondCol = "GQY1XT001EM0QH,GQY1XT001CDPZ1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM0O7"; +secondCol = "GQY1XT001EM0O7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELWEQ"; +secondCol = "GQY1XT001ELWEQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELQCK"; +secondCol = "GQY1XT001ELQCK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELHWX"; +secondCol = "GQY1XT001ELHWX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELEZO"; +secondCol = "GQY1XT001ELEZO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKI6F"; +secondCol = "GQY1XT001EKI6F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK9KU"; +secondCol = "GQY1XT001EK9KU,GQY1XT001EFEF1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK37G"; +secondCol = "GQY1XT001EK37G,GQY1XT001CMM6V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK258"; +secondCol = "GQY1XT001EK258"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJTED"; +secondCol = "GQY1XT001EJTED"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJRAK"; +secondCol = "GQY1XT001EJRAK,GQY1XT001EW1Y1,GQY1XT001D6NFH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJMF9"; +secondCol = "GQY1XT001EJMF9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHXXG"; +secondCol = "GQY1XT001EHXXG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHWUE"; +secondCol = "GQY1XT001EHWUE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHOA2"; +secondCol = "GQY1XT001EHOA2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH6SV"; +secondCol = "GQY1XT001EH6SV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH38T"; +secondCol = "GQY1XT001EH38T,GQY1XT001BPG25,GQY1XT001C2JRH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH12M"; +secondCol = "GQY1XT001EH12M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGV0R"; +secondCol = "GQY1XT001EGV0R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGIMR"; +secondCol = "GQY1XT001EGIMR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFKVR"; +secondCol = "GQY1XT001EFKVR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFCVQ"; +secondCol = "GQY1XT001EFCVQ,GQY1XT001B7CNY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFBM5"; +secondCol = "GQY1XT001EFBM5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EF1BF"; +secondCol = "GQY1XT001EF1BF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEW2G"; +secondCol = "GQY1XT001EEW2G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EESPD"; +secondCol = "GQY1XT001EESPD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEA4E"; +secondCol = "GQY1XT001EEA4E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EE9GI"; +secondCol = "GQY1XT001EE9GI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDTJ0"; +secondCol = "GQY1XT001EDTJ0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDI9C"; +secondCol = "GQY1XT001EDI9C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBK3E"; +secondCol = "GQY1XT001EBK3E,GQY1XT001B5NX2,GQY1XT001AFMGA,GQY1XT001EL8E7,GQY1XT001BG6GC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EB03N"; +secondCol = "GQY1XT001EB03N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EB01F"; +secondCol = "GQY1XT001EB01F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAOYD"; +secondCol = "GQY1XT001EAOYD,GQY1XT001DFU6A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E5FM5"; +secondCol = "GQY1XT001E5FM5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E5CON"; +secondCol = "GQY1XT001E5CON"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E2TM6"; +secondCol = "GQY1XT001E2TM6,GQY1XT001DA6C7,GQY1XT001CZ6J6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E2H4O"; +secondCol = "GQY1XT001E2H4O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E2D7X"; +secondCol = "GQY1XT001E2D7X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1PLX"; +secondCol = "GQY1XT001E1PLX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E15V8"; +secondCol = "GQY1XT001E15V8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E10TY"; +secondCol = "GQY1XT001E10TY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0DEM"; +secondCol = "GQY1XT001E0DEM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZV9Q"; +secondCol = "GQY1XT001DZV9Q,GQY1XT001BALH7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYW57"; +secondCol = "GQY1XT001DYW57"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYM6V"; +secondCol = "GQY1XT001DYM6V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY2KC"; +secondCol = "GQY1XT001DY2KC,GQY1XT001C9ZJT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXL8F"; +secondCol = "GQY1XT001DXL8F,GQY1XT001DLU9K,GQY1XT001B6QWV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX4S1"; +secondCol = "GQY1XT001DX4S1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWVAQ"; +secondCol = "GQY1XT001DWVAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWTVA"; +secondCol = "GQY1XT001DWTVA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWF5R"; +secondCol = "GQY1XT001DWF5R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW8RG"; +secondCol = "GQY1XT001DW8RG,GQY1XT001BXXQ9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DW1GN"; +secondCol = "GQY1XT001DW1GN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVW4B"; +secondCol = "GQY1XT001DVW4B,GQY1XT001B2YYY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVNJ0"; +secondCol = "GQY1XT001DVNJ0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DVED9"; +secondCol = "GQY1XT001DVED9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUQH1"; +secondCol = "GQY1XT001DUQH1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUOF1"; +secondCol = "GQY1XT001DUOF1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUNV0"; +secondCol = "GQY1XT001DUNV0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUFHE"; +secondCol = "GQY1XT001DUFHE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUA2T"; +secondCol = "GQY1XT001DUA2T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTC7H"; +secondCol = "GQY1XT001DTC7H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DT9LA"; +secondCol = "GQY1XT001DT9LA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSUJF"; +secondCol = "GQY1XT001DSUJF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSSPW"; +secondCol = "GQY1XT001DSSPW,GQY1XT001CWP9F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DS9WE"; +secondCol = "GQY1XT001DS9WE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR9VE"; +secondCol = "GQY1XT001DR9VE,GQY1XT001BWYX2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR038"; +secondCol = "GQY1XT001DR038"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQZK0"; +secondCol = "GQY1XT001DQZK0,GQY1XT001D9UPB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQUFK"; +secondCol = "GQY1XT001DQUFK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQNEZ"; +secondCol = "GQY1XT001DQNEZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ915"; +secondCol = "GQY1XT001DQ915"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ8IM"; +secondCol = "GQY1XT001DQ8IM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPV47"; +secondCol = "GQY1XT001DPV47"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPTZA"; +secondCol = "GQY1XT001DPTZA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPHDL"; +secondCol = "GQY1XT001DPHDL,GQY1XT001BX0NH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DONB7"; +secondCol = "GQY1XT001DONB7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN4K7"; +secondCol = "GQY1XT001DN4K7,GQY1XT001ETJSI,GQY1XT001BCV7C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMBHH"; +secondCol = "GQY1XT001DMBHH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DM4OG"; +secondCol = "GQY1XT001DM4OG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLHTI"; +secondCol = "GQY1XT001DLHTI,GQY1XT001BI67P,GQY1XT001A7TZ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DK3EL"; +secondCol = "GQY1XT001DK3EL,GQY1XT001ANWRG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJS6C"; +secondCol = "GQY1XT001DJS6C,GQY1XT001B0Z1M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJ51Z"; +secondCol = "GQY1XT001DJ51Z,GQY1XT001C95EO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHGCR"; +secondCol = "GQY1XT001DHGCR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGXZT"; +secondCol = "GQY1XT001DGXZT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGTVC"; +secondCol = "GQY1XT001DGTVC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGJN3"; +secondCol = "GQY1XT001DGJN3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGBZ3"; +secondCol = "GQY1XT001DGBZ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFZCJ"; +secondCol = "GQY1XT001DFZCJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFJPE"; +secondCol = "GQY1XT001DFJPE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFE4U"; +secondCol = "GQY1XT001DFE4U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF8IK"; +secondCol = "GQY1XT001DF8IK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEXPM"; +secondCol = "GQY1XT001DEXPM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DERAL"; +secondCol = "GQY1XT001DERAL,GQY1XT001DVAH4,GQY1XT001B40V9,GQY1XT001EAY11"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEDV1"; +secondCol = "GQY1XT001DEDV1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DE4MT"; +secondCol = "GQY1XT001DE4MT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBSD9"; +secondCol = "GQY1XT001DBSD9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBPAC"; +secondCol = "GQY1XT001DBPAC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBOLU"; +secondCol = "GQY1XT001DBOLU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DB8F3"; +secondCol = "GQY1XT001DB8F3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DARFS"; +secondCol = "GQY1XT001DARFS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAPRN"; +secondCol = "GQY1XT001DAPRN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DA93A"; +secondCol = "GQY1XT001DA93A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9MTI"; +secondCol = "GQY1XT001D9MTI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8D72"; +secondCol = "GQY1XT001D8D72,GQY1XT001C9R6K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7K8Y"; +secondCol = "GQY1XT001D7K8Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7G24"; +secondCol = "GQY1XT001D7G24"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D75WE"; +secondCol = "GQY1XT001D75WE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6QT9"; +secondCol = "GQY1XT001D6QT9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6NM5"; +secondCol = "GQY1XT001D6NM5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6JYV"; +secondCol = "GQY1XT001D6JYV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D668E"; +secondCol = "GQY1XT001D668E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5MFV"; +secondCol = "GQY1XT001D5MFV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4N08"; +secondCol = "GQY1XT001D4N08"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4I9I"; +secondCol = "GQY1XT001D4I9I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4CDR"; +secondCol = "GQY1XT001D4CDR,GQY1XT001AYU4S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D41JD"; +secondCol = "GQY1XT001D41JD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3UVI"; +secondCol = "GQY1XT001D3UVI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3TGT"; +secondCol = "GQY1XT001D3TGT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2V7O"; +secondCol = "GQY1XT001D2V7O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2O2I"; +secondCol = "GQY1XT001D2O2I,GQY1XT001C5X0V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1TIS"; +secondCol = "GQY1XT001D1TIS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1KCQ"; +secondCol = "GQY1XT001D1KCQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1H65"; +secondCol = "GQY1XT001D1H65,GQY1XT001CWXHD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D15SY"; +secondCol = "GQY1XT001D15SY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D12JD"; +secondCol = "GQY1XT001D12JD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0UXA"; +secondCol = "GQY1XT001D0UXA,GQY1XT001A29LT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0LWE"; +secondCol = "GQY1XT001D0LWE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D03JZ"; +secondCol = "GQY1XT001D03JZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZRIA"; +secondCol = "GQY1XT001CZRIA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZ88P"; +secondCol = "GQY1XT001CZ88P,GQY1XT001ASBZ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZ2XN"; +secondCol = "GQY1XT001CZ2XN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYFLO"; +secondCol = "GQY1XT001CYFLO,GQY1XT001CSU2A,GQY1XT001AKSGW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXZ3R"; +secondCol = "GQY1XT001CXZ3R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXQN8"; +secondCol = "GQY1XT001CXQN8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX4XX"; +secondCol = "GQY1XT001CX4XX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX3XD"; +secondCol = "GQY1XT001CX3XD,GQY1XT001A0QV0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX0JZ"; +secondCol = "GQY1XT001CX0JZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWGHE"; +secondCol = "GQY1XT001CWGHE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWBXI"; +secondCol = "GQY1XT001CWBXI,GQY1XT001E282Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWANE"; +secondCol = "GQY1XT001CWANE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVCCU"; +secondCol = "GQY1XT001CVCCU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSSBN"; +secondCol = "GQY1XT001CSSBN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSN03"; +secondCol = "GQY1XT001CSN03"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSGXE"; +secondCol = "GQY1XT001CSGXE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CP95M"; +secondCol = "GQY1XT001CP95M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CP169"; +secondCol = "GQY1XT001CP169,GQY1XT001BH51H,GQY1XT001CPO4N,GQY1XT001BYN0D,GQY1XT001BEJO7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001COGSY"; +secondCol = "GQY1XT001COGSY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO68U"; +secondCol = "GQY1XT001CO68U,GQY1XT001B955X,GQY1XT001B8FOO,GQY1XT001B86H7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNKEX"; +secondCol = "GQY1XT001CNKEX,GQY1XT001BJCCD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM5YX"; +secondCol = "GQY1XT001CM5YX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CK485"; +secondCol = "GQY1XT001CK485"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJQYC"; +secondCol = "GQY1XT001CJQYC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ6I6"; +secondCol = "GQY1XT001CJ6I6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIDBM"; +secondCol = "GQY1XT001CIDBM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHSVD"; +secondCol = "GQY1XT001CHSVD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH9SM"; +secondCol = "GQY1XT001CH9SM,GQY1XT001A17PE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH86G"; +secondCol = "GQY1XT001CH86G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH2DV"; +secondCol = "GQY1XT001CH2DV,GQY1XT001C13EQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGHIY"; +secondCol = "GQY1XT001CGHIY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CG8RD"; +secondCol = "GQY1XT001CG8RD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CG85R"; +secondCol = "GQY1XT001CG85R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFXQH"; +secondCol = "GQY1XT001CFXQH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFGXK"; +secondCol = "GQY1XT001CFGXK,GQY1XT001D4744"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFGWX"; +secondCol = "GQY1XT001CFGWX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEY38"; +secondCol = "GQY1XT001CEY38"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEXOW"; +secondCol = "GQY1XT001CEXOW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CE3M2"; +secondCol = "GQY1XT001CE3M2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CE01N"; +secondCol = "GQY1XT001CE01N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDIOE"; +secondCol = "GQY1XT001CDIOE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDDN6"; +secondCol = "GQY1XT001CDDN6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CD3K3"; +secondCol = "GQY1XT001CD3K3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCS4A"; +secondCol = "GQY1XT001CCS4A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CABV8"; +secondCol = "GQY1XT001CABV8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9YVV"; +secondCol = "GQY1XT001C9YVV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9E53"; +secondCol = "GQY1XT001C9E53"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7RLB"; +secondCol = "GQY1XT001C7RLB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7AIP"; +secondCol = "GQY1XT001C7AIP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C75MF"; +secondCol = "GQY1XT001C75MF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6K9P"; +secondCol = "GQY1XT001C6K9P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5MGN"; +secondCol = "GQY1XT001C5MGN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C58KW"; +secondCol = "GQY1XT001C58KW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C523Y"; +secondCol = "GQY1XT001C523Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4NZY"; +secondCol = "GQY1XT001C4NZY,GQY1XT001AHPU0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4LW9"; +secondCol = "GQY1XT001C4LW9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4865"; +secondCol = "GQY1XT001C4865"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C40WB"; +secondCol = "GQY1XT001C40WB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C397Z"; +secondCol = "GQY1XT001C397Z,GQY1XT001DLT0J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3304"; +secondCol = "GQY1XT001C3304"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2T69"; +secondCol = "GQY1XT001C2T69,GQY1XT001AMN8H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2IXZ"; +secondCol = "GQY1XT001C2IXZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C26LW"; +secondCol = "GQY1XT001C26LW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C25U9"; +secondCol = "GQY1XT001C25U9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1I37"; +secondCol = "GQY1XT001C1I37"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1CCS"; +secondCol = "GQY1XT001C1CCS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0IH9"; +secondCol = "GQY1XT001C0IH9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C09HT"; +secondCol = "GQY1XT001C09HT,GQY1XT001BMHS1,GQY1XT001BCTHY,GQY1XT001B610J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZSFO"; +secondCol = "GQY1XT001BZSFO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZP8J"; +secondCol = "GQY1XT001BZP8J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZJJ2"; +secondCol = "GQY1XT001BZJJ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZIJ4"; +secondCol = "GQY1XT001BZIJ4,GQY1XT001AVGJZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYS0K"; +secondCol = "GQY1XT001BYS0K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYOEW"; +secondCol = "GQY1XT001BYOEW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYB50"; +secondCol = "GQY1XT001BYB50,GQY1XT001ARYCZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVOX9"; +secondCol = "GQY1XT001BVOX9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVI50"; +secondCol = "GQY1XT001BVI50,GQY1XT001BN7ZX,GQY1XT001EF4JP,GQY1XT001D9A12,GQY1XT001EHCOP,GQY1XT001A7O9R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVE7A"; +secondCol = "GQY1XT001BVE7A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV1YB"; +secondCol = "GQY1XT001BV1YB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSJJO"; +secondCol = "GQY1XT001BSJJO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSAZ7"; +secondCol = "GQY1XT001BSAZ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BS4PJ"; +secondCol = "GQY1XT001BS4PJ,GQY1XT001BEL4B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQNRJ"; +secondCol = "GQY1XT001BQNRJ,GQY1XT001DE4RL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQI6Q"; +secondCol = "GQY1XT001BQI6Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BP6T4"; +secondCol = "GQY1XT001BP6T4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BO1B9"; +secondCol = "GQY1XT001BO1B9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNHFP"; +secondCol = "GQY1XT001BNHFP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BM3N7"; +secondCol = "GQY1XT001BM3N7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLX3A"; +secondCol = "GQY1XT001BLX3A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BL4UA"; +secondCol = "GQY1XT001BL4UA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKWUQ"; +secondCol = "GQY1XT001BKWUQ,GQY1XT001ANAAG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ7J6"; +secondCol = "GQY1XT001BJ7J6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIB5H"; +secondCol = "GQY1XT001BIB5H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIAMP"; +secondCol = "GQY1XT001BIAMP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHZMM"; +secondCol = "GQY1XT001BHZMM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHZH4"; +secondCol = "GQY1XT001BHZH4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGP18"; +secondCol = "GQY1XT001BGP18"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGNFF"; +secondCol = "GQY1XT001BGNFF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE830"; +secondCol = "GQY1XT001BE830,GQY1XT001AP954"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE1VD"; +secondCol = "GQY1XT001BE1VD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDUN6"; +secondCol = "GQY1XT001BDUN6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCPKR"; +secondCol = "GQY1XT001BCPKR,GQY1XT001A734B,GQY1XT001A3O9P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCMUX"; +secondCol = "GQY1XT001BCMUX,GQY1XT001B65QN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCHP8"; +secondCol = "GQY1XT001BCHP8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBYUK"; +secondCol = "GQY1XT001BBYUK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAKTQ"; +secondCol = "GQY1XT001BAKTQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA91D"; +secondCol = "GQY1XT001BA91D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA7J8"; +secondCol = "GQY1XT001BA7J8,GQY1XT001AMV59"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA5GH"; +secondCol = "GQY1XT001BA5GH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9Q5E"; +secondCol = "GQY1XT001B9Q5E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9A2V"; +secondCol = "GQY1XT001B9A2V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8RLN"; +secondCol = "GQY1XT001B8RLN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8MID"; +secondCol = "GQY1XT001B8MID"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B80IP"; +secondCol = "GQY1XT001B80IP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6S1X"; +secondCol = "GQY1XT001B6S1X,GQY1XT001AQQZ7,GQY1XT001A6EAW,GQY1XT001B8UKY,GQY1XT001CM7FD,GQY1XT001DNEAX,GQY1XT001C2U9U,GQY1XT001A8H68,GQY1XT001CLYIX,GQY1XT001BBGUO,GQY1XT001EU3CY,GQY1XT001B85VK,GQY1XT001ER06F,GQY1XT001BL01T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6NYW"; +secondCol = "GQY1XT001B6NYW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6L4H"; +secondCol = "GQY1XT001B6L4H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6GNO"; +secondCol = "GQY1XT001B6GNO,GQY1XT001A41R6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B66RF"; +secondCol = "GQY1XT001B66RF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B61RV"; +secondCol = "GQY1XT001B61RV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5CKB"; +secondCol = "GQY1XT001B5CKB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B51KL"; +secondCol = "GQY1XT001B51KL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4924"; +secondCol = "GQY1XT001B4924,GQY1XT001AWWZJ,GQY1XT001A7IHM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B43PG"; +secondCol = "GQY1XT001B43PG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B42UM"; +secondCol = "GQY1XT001B42UM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3AAS"; +secondCol = "GQY1XT001B3AAS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B351W"; +secondCol = "GQY1XT001B351W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2B02"; +secondCol = "GQY1XT001B2B02"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1O66"; +secondCol = "GQY1XT001B1O66"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1KJB"; +secondCol = "GQY1XT001B1KJB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ0YY"; +secondCol = "GQY1XT001AZ0YY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYWN9"; +secondCol = "GQY1XT001AYWN9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AXE4L"; +secondCol = "GQY1XT001AXE4L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWZ90"; +secondCol = "GQY1XT001AWZ90"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWJD3"; +secondCol = "GQY1XT001AWJD3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWJ4F"; +secondCol = "GQY1XT001AWJ4F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWGSE"; +secondCol = "GQY1XT001AWGSE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW0PD"; +secondCol = "GQY1XT001AW0PD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV6XZ"; +secondCol = "GQY1XT001AV6XZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV240"; +secondCol = "GQY1XT001AV240"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUVTV"; +secondCol = "GQY1XT001AUVTV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AURRM"; +secondCol = "GQY1XT001AURRM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATUWN"; +secondCol = "GQY1XT001ATUWN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATI5U"; +secondCol = "GQY1XT001ATI5U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATHKA"; +secondCol = "GQY1XT001ATHKA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQ17Y"; +secondCol = "GQY1XT001AQ17Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APSXD"; +secondCol = "GQY1XT001APSXD,GQY1XT001COF5A,GQY1XT001B2DEL,GQY1XT001C44DT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APKVT"; +secondCol = "GQY1XT001APKVT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP9K8"; +secondCol = "GQY1XT001AP9K8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP779"; +secondCol = "GQY1XT001AP779"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AP0HA"; +secondCol = "GQY1XT001AP0HA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO016"; +secondCol = "GQY1XT001AO016"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANRDN"; +secondCol = "GQY1XT001ANRDN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN2YO"; +secondCol = "GQY1XT001AN2YO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMQH4"; +secondCol = "GQY1XT001AMQH4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMERS"; +secondCol = "GQY1XT001AMERS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AM67G"; +secondCol = "GQY1XT001AM67G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALQ0I"; +secondCol = "GQY1XT001ALQ0I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALOK9"; +secondCol = "GQY1XT001ALOK9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALNXT"; +secondCol = "GQY1XT001ALNXT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKOR4"; +secondCol = "GQY1XT001AKOR4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AI1FE"; +secondCol = "GQY1XT001AI1FE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHY9K"; +secondCol = "GQY1XT001AHY9K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHWOL"; +secondCol = "GQY1XT001AHWOL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG8EU"; +secondCol = "GQY1XT001AG8EU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG3B8"; +secondCol = "GQY1XT001AG3B8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFRIJ"; +secondCol = "GQY1XT001AFRIJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFQZ9"; +secondCol = "GQY1XT001AFQZ9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFH4C"; +secondCol = "GQY1XT001AFH4C,GQY1XT001DPNWW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEYVK"; +secondCol = "GQY1XT001AEYVK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEL2X"; +secondCol = "GQY1XT001AEL2X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8DPO"; +secondCol = "GQY1XT001A8DPO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7W4P"; +secondCol = "GQY1XT001A7W4P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7V7C"; +secondCol = "GQY1XT001A7V7C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A774H"; +secondCol = "GQY1XT001A774H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6X4L"; +secondCol = "GQY1XT001A6X4L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A64OH"; +secondCol = "GQY1XT001A64OH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A60MM"; +secondCol = "GQY1XT001A60MM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5Q2R"; +secondCol = "GQY1XT001A5Q2R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4AB5"; +secondCol = "GQY1XT001A4AB5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1I70"; +secondCol = "GQY1XT001A1I70"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1DE5"; +secondCol = "GQY1XT001A1DE5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A15A7"; +secondCol = "GQY1XT001A15A7,GQY1XT001AFHMQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A03YW"; +secondCol = "GQY1XT001A03YW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9BAI"; +secondCol = "GQY1XT001A9BAI,GQY1XT001EGUL7,GQY1XT001DO1NH,GQY1XT001D4LBO,GQY1XT001BKDQP,GQY1XT001B927G,GQY1XT001APX4C,GQY1XT001BCATV,GQY1XT001EG3GH,GQY1XT001ETZQR,GQY1XT001DMYYF,GQY1XT001DEKWP,GQY1XT001DAQ5J,GQY1XT001CAA7M,GQY1XT001BXWNO,GQY1XT001B7WVU,GQY1XT001CWY08,GQY1XT001EHVDX,GQY1XT001DJXD7,GQY1XT001CR1UX,GQY1XT001BT7Q6,GQY1XT001A3CH4,GQY1XT001A159D,GQY1XT001E3OUH,GQY1XT001EMRIH,GQY1XT001EVNPP,GQY1XT001EDEKN,GQY1XT001BCNGR,GQY1XT001DTC4R,GQY1XT001C4CTD,GQY1XT001EV29D,GQY1XT001DPHRD,GQY1XT001DPQXF,GQY1XT001D7BGH,GQY1XT001BQA8D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9OS4"; +secondCol = "GQY1XT001D9OS4,GQY1XT001BEBK8,GQY1XT001CMBJ7,GQY1XT001BZRJ7,GQY1XT001DI23J,GQY1XT001DYJ4L,GQY1XT001BXQ0C,GQY1XT001ENTEU,GQY1XT001BCHZ0,GQY1XT001ELM3A,GQY1XT001AK4UE,GQY1XT001ER6UP,GQY1XT001DXGMK,GQY1XT001DQY1F,GQY1XT001CU6OB,GQY1XT001CRDX8,GQY1XT001A63DM,GQY1XT001B39D2,GQY1XT001ATAGH,GQY1XT001EVWPZ,GQY1XT001EUXTN,GQY1XT001A4N4I,GQY1XT001AL2MA,GQY1XT001DTID9,GQY1XT001DRHS3,GQY1XT001CLF7E,GQY1XT001C381P,GQY1XT001DWZX8,GQY1XT001C1JWQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBY45"; +secondCol = "GQY1XT001CBY45,GQY1XT001B4ASX,GQY1XT001D2B4R,GQY1XT001CD124,GQY1XT001A7KHS,GQY1XT001EMFIU,GQY1XT001CIK3C,GQY1XT001BM3Y7,GQY1XT001AJAW6,GQY1XT001AMC7G,GQY1XT001BMZFO,GQY1XT001BUCPK,GQY1XT001BRGY3,GQY1XT001A88HL,GQY1XT001C8MX8,GQY1XT001E5F9X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL7AU"; +secondCol = "GQY1XT001DL7AU,GQY1XT001BWB1R,GQY1XT001DR1SH,GQY1XT001A28KQ,GQY1XT001D6HYX,GQY1XT001B4IVG,GQY1XT001BEY70,GQY1XT001A3R98,GQY1XT001EF8S0,GQY1XT001AYD00,GQY1XT001EH4FA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHH60"; +secondCol = "GQY1XT001CHH60,GQY1XT001ELVVE,GQY1XT001BA28T,GQY1XT001AVNNS,GQY1XT001AY6LZ,GQY1XT001CQNM2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPGSI"; +secondCol = "GQY1XT001BPGSI,GQY1XT001B91E3,GQY1XT001DBPK2,GQY1XT001BHBG2,GQY1XT001BJAMK,GQY1XT001AWBC0,GQY1XT001D6AL4,GQY1XT001E11RA,GQY1XT001BT94R,GQY1XT001DV6ZG,GQY1XT001BWDA3,GQY1XT001A54YX,GQY1XT001EZIRM,GQY1XT001CR8P2,GQY1XT001BZORL,GQY1XT001A1BM9,GQY1XT001CXUCW,GQY1XT001A0ZRG,GQY1XT001D80DB,GQY1XT001AH1QQ,GQY1XT001DR84V,GQY1XT001C3E02"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU562"; +secondCol = "GQY1XT001DU562,GQY1XT001DP9XT,GQY1XT001CV69B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYXHS"; +secondCol = "GQY1XT001CYXHS,GQY1XT001BZ58R,GQY1XT001DV6PP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIBAJ"; +secondCol = "GQY1XT001AIBAJ,GQY1XT001EOKR5,GQY1XT001D2KDQ,GQY1XT001EID8A,GQY1XT001ED618,GQY1XT001E4TN9,GQY1XT001DW1TX,GQY1XT001DG872,GQY1XT001DD9Z8,GQY1XT001AE2KD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFWU4"; +secondCol = "GQY1XT001EFWU4,GQY1XT001CNN5O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFCWF"; +secondCol = "GQY1XT001EFCWF,GQY1XT001CO3JC,GQY1XT001AOCMO,GQY1XT001A8C2L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9HMJ"; +secondCol = "GQY1XT001D9HMJ,GQY1XT001B0IL0,GQY1XT001AX3IS,GQY1XT001A8E9H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CY9R7"; +secondCol = "GQY1XT001CY9R7,GQY1XT001EFZCG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQRKG"; +secondCol = "GQY1XT001CQRKG,GQY1XT001CUMGI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJDEI"; +secondCol = "GQY1XT001CJDEI,GQY1XT001EQ2P3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CF1T3"; +secondCol = "GQY1XT001CF1T3,GQY1XT001BXWWH,GQY1XT001AG9LY,GQY1XT001AHRSL,GQY1XT001BZBQF,GQY1XT001EC02V,GQY1XT001AIVT3,GQY1XT001CEC0D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBCXW"; +secondCol = "GQY1XT001CBCXW,GQY1XT001DE1BA,GQY1XT001DFLM1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE1NB"; +secondCol = "GQY1XT001BE1NB,GQY1XT001ERL2V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCA6U"; +secondCol = "GQY1XT001BCA6U,GQY1XT001AX2FC,GQY1XT001DVY8V,GQY1XT001BYQY0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B68W9"; +secondCol = "GQY1XT001B68W9,GQY1XT001CH6TK,GQY1XT001EKZM3,GQY1XT001DLSMH,GQY1XT001B8URH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYQUX"; +secondCol = "GQY1XT001AYQUX,GQY1XT001B1VZ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AX5T9"; +secondCol = "GQY1XT001AX5T9,GQY1XT001CCD6M,GQY1XT001EERHC,GQY1XT001AFQDJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALN4T"; +secondCol = "GQY1XT001ALN4T,GQY1XT001CW7A2,GQY1XT001D3W17"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJG87"; +secondCol = "GQY1XT001AJG87,GQY1XT001AV9S9,GQY1XT001DUBUK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJ30Z"; +secondCol = "GQY1XT001AJ30Z,GQY1XT001EA4T9,GQY1XT001EO7U5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7WE9"; +secondCol = "GQY1XT001A7WE9,GQY1XT001DTSGL,GQY1XT001B8WKB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6VBJ"; +secondCol = "GQY1XT001A6VBJ,GQY1XT001DY5KW,GQY1XT001EU14N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZYSM"; +secondCol = "GQY1XT001EZYSM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZQ8T"; +secondCol = "GQY1XT001EZQ8T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXSA0"; +secondCol = "GQY1XT001EXSA0,GQY1XT001BUWG5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVJL8"; +secondCol = "GQY1XT001EVJL8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ET74J"; +secondCol = "GQY1XT001ET74J,GQY1XT001B9HZA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESNSJ"; +secondCol = "GQY1XT001ESNSJ,GQY1XT001BCZ44,GQY1XT001AHBUQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERL66"; +secondCol = "GQY1XT001ERL66"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPVS7"; +secondCol = "GQY1XT001EPVS7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPP77"; +secondCol = "GQY1XT001EPP77"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPLB3"; +secondCol = "GQY1XT001EPLB3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPJT4"; +secondCol = "GQY1XT001EPJT4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EP2GW"; +secondCol = "GQY1XT001EP2GW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENZ2E"; +secondCol = "GQY1XT001ENZ2E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENUI2"; +secondCol = "GQY1XT001ENUI2,GQY1XT001DVMSB,GQY1XT001CET19"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENHB8"; +secondCol = "GQY1XT001ENHB8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMW73"; +secondCol = "GQY1XT001EMW73"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMEEK"; +secondCol = "GQY1XT001EMEEK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EM78I"; +secondCol = "GQY1XT001EM78I,GQY1XT001DUQT1,GQY1XT001BCBGA,GQY1XT001EDJTP,GQY1XT001A3XDZ,GQY1XT001DTC8A,GQY1XT001DCOHU,GQY1XT001D534M,GQY1XT001B9GLV,GQY1XT001DZXBY,GQY1XT001DGCON,GQY1XT001CC5YR,GQY1XT001EDH1L,GQY1XT001EKLWY,GQY1XT001AYXR2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELEJ9"; +secondCol = "GQY1XT001ELEJ9,GQY1XT001AI7EY,GQY1XT001D6IS1,GQY1XT001EDQJ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKJWY"; +secondCol = "GQY1XT001EKJWY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGNVG"; +secondCol = "GQY1XT001EGNVG,GQY1XT001AY695"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG269"; +secondCol = "GQY1XT001EG269"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEQKJ"; +secondCol = "GQY1XT001EEQKJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDTK5"; +secondCol = "GQY1XT001EDTK5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDMS3"; +secondCol = "GQY1XT001EDMS3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDABE"; +secondCol = "GQY1XT001EDABE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED3D6"; +secondCol = "GQY1XT001ED3D6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED0QA"; +secondCol = "GQY1XT001ED0QA,GQY1XT001C4TWC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECE4O"; +secondCol = "GQY1XT001ECE4O,GQY1XT001CRVI0,GQY1XT001ANGS4,GQY1XT001A9VF8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBDSU"; +secondCol = "GQY1XT001EBDSU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EB6IM"; +secondCol = "GQY1XT001EB6IM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA4MU"; +secondCol = "GQY1XT001EA4MU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E6KSQ"; +secondCol = "GQY1XT001E6KSQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E5F5G"; +secondCol = "GQY1XT001E5F5G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E2NOM"; +secondCol = "GQY1XT001E2NOM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1YYS"; +secondCol = "GQY1XT001E1YYS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1W7A"; +secondCol = "GQY1XT001E1W7A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1QXS"; +secondCol = "GQY1XT001E1QXS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E14P0"; +secondCol = "GQY1XT001E14P0,GQY1XT001BUT09"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0KUT"; +secondCol = "GQY1XT001E0KUT,GQY1XT001DGIAQ,GQY1XT001BA8C2,GQY1XT001BV8ER,GQY1XT001D8HPB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0684"; +secondCol = "GQY1XT001E0684"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZPW9"; +secondCol = "GQY1XT001DZPW9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZK4V"; +secondCol = "GQY1XT001DZK4V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZDRG"; +secondCol = "GQY1XT001DZDRG,GQY1XT001CDS3A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYZ2Q"; +secondCol = "GQY1XT001DYZ2Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY77C"; +secondCol = "GQY1XT001DY77C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY30Y"; +secondCol = "GQY1XT001DY30Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXPG7"; +secondCol = "GQY1XT001DXPG7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXJEY"; +secondCol = "GQY1XT001DXJEY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWS7R"; +secondCol = "GQY1XT001DWS7R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWDQE"; +secondCol = "GQY1XT001DWDQE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWAKO"; +secondCol = "GQY1XT001DWAKO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUOZH"; +secondCol = "GQY1XT001DUOZH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUIYM"; +secondCol = "GQY1XT001DUIYM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUBJQ"; +secondCol = "GQY1XT001DUBJQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTJB2"; +secondCol = "GQY1XT001DTJB2,GQY1XT001DNR6O,GQY1XT001DB7KY,GQY1XT001D5VZU,GQY1XT001BU8RM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRC21"; +secondCol = "GQY1XT001DRC21,GQY1XT001BI6Z7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOVY1"; +secondCol = "GQY1XT001DOVY1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNYAN"; +secondCol = "GQY1XT001DNYAN,GQY1XT001ASOEH,GQY1XT001AQ63V,GQY1XT001C9QZF,GQY1XT001ER6R5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNCE2"; +secondCol = "GQY1XT001DNCE2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMKCG"; +secondCol = "GQY1XT001DMKCG,GQY1XT001DWIX9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLSKT"; +secondCol = "GQY1XT001DLSKT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKLBS"; +secondCol = "GQY1XT001DKLBS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKBL4"; +secondCol = "GQY1XT001DKBL4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIWN1"; +secondCol = "GQY1XT001DIWN1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIEVS"; +secondCol = "GQY1XT001DIEVS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHSDW"; +secondCol = "GQY1XT001DHSDW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGZGE"; +secondCol = "GQY1XT001DGZGE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGFCV"; +secondCol = "GQY1XT001DGFCV,GQY1XT001D9UY3,GQY1XT001BXA6S,GQY1XT001AL09M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFPDZ"; +secondCol = "GQY1XT001DFPDZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF5YP"; +secondCol = "GQY1XT001DF5YP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEDYU"; +secondCol = "GQY1XT001DEDYU,GQY1XT001BYQ3B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDOTJ"; +secondCol = "GQY1XT001DDOTJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDH6M"; +secondCol = "GQY1XT001DDH6M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD43P"; +secondCol = "GQY1XT001DD43P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAR0U"; +secondCol = "GQY1XT001DAR0U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAFKD"; +secondCol = "GQY1XT001DAFKD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAC2U"; +secondCol = "GQY1XT001DAC2U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DABXK"; +secondCol = "GQY1XT001DABXK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9S7R"; +secondCol = "GQY1XT001D9S7R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9I4B"; +secondCol = "GQY1XT001D9I4B,GQY1XT001AWMAQ,GQY1XT001BX6U1,GQY1XT001B1WZE,GQY1XT001A4ABL,GQY1XT001BT4SH,GQY1XT001BNJN9,GQY1XT001B0TVP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8PRO"; +secondCol = "GQY1XT001D8PRO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8BBD"; +secondCol = "GQY1XT001D8BBD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7ZPN"; +secondCol = "GQY1XT001D7ZPN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6M5O"; +secondCol = "GQY1XT001D6M5O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5RB1"; +secondCol = "GQY1XT001D5RB1,GQY1XT001APW9V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D54SK"; +secondCol = "GQY1XT001D54SK,GQY1XT001BNYEI,GQY1XT001B6C78"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D477O"; +secondCol = "GQY1XT001D477O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2XTB"; +secondCol = "GQY1XT001D2XTB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2GAU"; +secondCol = "GQY1XT001D2GAU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2742"; +secondCol = "GQY1XT001D2742"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D22UC"; +secondCol = "GQY1XT001D22UC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0UBD"; +secondCol = "GQY1XT001D0UBD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D042F"; +secondCol = "GQY1XT001D042F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D03O7"; +secondCol = "GQY1XT001D03O7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZVKT"; +secondCol = "GQY1XT001CZVKT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZU7K"; +secondCol = "GQY1XT001CZU7K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZQ2T"; +secondCol = "GQY1XT001CZQ2T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZLMA"; +secondCol = "GQY1XT001CZLMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZ9WR"; +secondCol = "GQY1XT001CZ9WR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CY98E"; +secondCol = "GQY1XT001CY98E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXX5V"; +secondCol = "GQY1XT001CXX5V,GQY1XT001BT3RH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWVW0"; +secondCol = "GQY1XT001CWVW0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWIPD"; +secondCol = "GQY1XT001CWIPD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWFGU"; +secondCol = "GQY1XT001CWFGU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW1IR"; +secondCol = "GQY1XT001CW1IR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVOHN"; +secondCol = "GQY1XT001CVOHN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVIV0"; +secondCol = "GQY1XT001CVIV0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUYCW"; +secondCol = "GQY1XT001CUYCW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS85M"; +secondCol = "GQY1XT001CS85M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRNLX"; +secondCol = "GQY1XT001CRNLX,GQY1XT001AS3HW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CR03K"; +secondCol = "GQY1XT001CR03K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQF64"; +secondCol = "GQY1XT001CQF64"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQE7X"; +secondCol = "GQY1XT001CQE7X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPXGG"; +secondCol = "GQY1XT001CPXGG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNBWQ"; +secondCol = "GQY1XT001CNBWQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CL6NZ"; +secondCol = "GQY1XT001CL6NZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CL13S"; +secondCol = "GQY1XT001CL13S,GQY1XT001DNEYB,GQY1XT001BGV6N,GQY1XT001DXGFH,GQY1XT001CYSD1,GQY1XT001CSLYR,GQY1XT001BMO0R,GQY1XT001CYK2O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKXY1"; +secondCol = "GQY1XT001CKXY1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJU75"; +secondCol = "GQY1XT001CJU75"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGYXS"; +secondCol = "GQY1XT001CGYXS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGEXZ"; +secondCol = "GQY1XT001CGEXZ,GQY1XT001BIR4P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFOI3"; +secondCol = "GQY1XT001CFOI3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFK1I"; +secondCol = "GQY1XT001CFK1I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEZSI"; +secondCol = "GQY1XT001CEZSI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDXSI"; +secondCol = "GQY1XT001CDXSI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDVGA"; +secondCol = "GQY1XT001CDVGA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCEVI"; +secondCol = "GQY1XT001CCEVI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CC81T"; +secondCol = "GQY1XT001CC81T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAPQV"; +secondCol = "GQY1XT001CAPQV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAKFP"; +secondCol = "GQY1XT001CAKFP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAK22"; +secondCol = "GQY1XT001CAK22"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAHF0"; +secondCol = "GQY1XT001CAHF0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CACEV"; +secondCol = "GQY1XT001CACEV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9E0N"; +secondCol = "GQY1XT001C9E0N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C94DM"; +secondCol = "GQY1XT001C94DM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9343"; +secondCol = "GQY1XT001C9343"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8Y34"; +secondCol = "GQY1XT001C8Y34"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C85B2"; +secondCol = "GQY1XT001C85B2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6M6H"; +secondCol = "GQY1XT001C6M6H,GQY1XT001BI1LZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5IR3"; +secondCol = "GQY1XT001C5IR3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4RLX"; +secondCol = "GQY1XT001C4RLX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4R21"; +secondCol = "GQY1XT001C4R21"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4G56"; +secondCol = "GQY1XT001C4G56"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C42HX"; +secondCol = "GQY1XT001C42HX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2UUY"; +secondCol = "GQY1XT001C2UUY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYRAT"; +secondCol = "GQY1XT001BYRAT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYR1O"; +secondCol = "GQY1XT001BYR1O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BY259"; +secondCol = "GQY1XT001BY259"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWW4P"; +secondCol = "GQY1XT001BWW4P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWNZB"; +secondCol = "GQY1XT001BWNZB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWFU4"; +secondCol = "GQY1XT001BWFU4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW0IA"; +secondCol = "GQY1XT001BW0IA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVWMR"; +secondCol = "GQY1XT001BVWMR,GQY1XT001A5A6T,GQY1XT001DL9UL,GQY1XT001CX7ZO,GQY1XT001BC0Z4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSZ5K"; +secondCol = "GQY1XT001BSZ5K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BS3HC"; +secondCol = "GQY1XT001BS3HC,GQY1XT001ELZSQ,GQY1XT001BDLML,GQY1XT001DFPYV,GQY1XT001A2GVA,GQY1XT001C3N0E,GQY1XT001BQEUQ,GQY1XT001BRMR5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRFWE"; +secondCol = "GQY1XT001BRFWE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQVU9"; +secondCol = "GQY1XT001BQVU9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQQH8"; +secondCol = "GQY1XT001BQQH8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQCEO"; +secondCol = "GQY1XT001BQCEO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ5GN"; +secondCol = "GQY1XT001BQ5GN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BODSF"; +secondCol = "GQY1XT001BODSF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKZES"; +secondCol = "GQY1XT001BKZES"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKPHF"; +secondCol = "GQY1XT001BKPHF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ3SU"; +secondCol = "GQY1XT001BJ3SU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ1XX"; +secondCol = "GQY1XT001BJ1XX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIZCD"; +secondCol = "GQY1XT001BIZCD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIPNI"; +secondCol = "GQY1XT001BIPNI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIGP0"; +secondCol = "GQY1XT001BIGP0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH2BI"; +secondCol = "GQY1XT001BH2BI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFJXC"; +secondCol = "GQY1XT001BFJXC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF5FW"; +secondCol = "GQY1XT001BF5FW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF0VF"; +secondCol = "GQY1XT001BF0VF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BECMA"; +secondCol = "GQY1XT001BECMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE5XX"; +secondCol = "GQY1XT001BE5XX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDYDN"; +secondCol = "GQY1XT001BDYDN,GQY1XT001AEDRK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDF2Y"; +secondCol = "GQY1XT001BDF2Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCJXM"; +secondCol = "GQY1XT001BCJXM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCJTJ"; +secondCol = "GQY1XT001BCJTJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCBWQ"; +secondCol = "GQY1XT001BCBWQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBYRK"; +secondCol = "GQY1XT001BBYRK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBTI4"; +secondCol = "GQY1XT001BBTI4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBE9K"; +secondCol = "GQY1XT001BBE9K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB4X7"; +secondCol = "GQY1XT001BB4X7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAVPM"; +secondCol = "GQY1XT001BAVPM,GQY1XT001BC9Y9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BACNK"; +secondCol = "GQY1XT001BACNK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7N9C"; +secondCol = "GQY1XT001B7N9C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7EVD"; +secondCol = "GQY1XT001B7EVD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B637B"; +secondCol = "GQY1XT001B637B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5QTM"; +secondCol = "GQY1XT001B5QTM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B586P"; +secondCol = "GQY1XT001B586P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B31Y2"; +secondCol = "GQY1XT001B31Y2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2LJX"; +secondCol = "GQY1XT001B2LJX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2CND"; +secondCol = "GQY1XT001B2CND"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B26ZN"; +secondCol = "GQY1XT001B26ZN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1FPP"; +secondCol = "GQY1XT001B1FPP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1BHQ"; +secondCol = "GQY1XT001B1BHQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZUBU"; +secondCol = "GQY1XT001AZUBU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZU52"; +secondCol = "GQY1XT001AZU52"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYT4G"; +secondCol = "GQY1XT001AYT4G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYPVB"; +secondCol = "GQY1XT001AYPVB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AY3TM"; +secondCol = "GQY1XT001AY3TM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWZCV"; +secondCol = "GQY1XT001AWZCV,GQY1XT001AE49T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWRFH"; +secondCol = "GQY1XT001AWRFH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU8IP"; +secondCol = "GQY1XT001AU8IP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATYMR"; +secondCol = "GQY1XT001ATYMR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATWPZ"; +secondCol = "GQY1XT001ATWPZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATIMP"; +secondCol = "GQY1XT001ATIMP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATCV1"; +secondCol = "GQY1XT001ATCV1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASY0A"; +secondCol = "GQY1XT001ASY0A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASSY3"; +secondCol = "GQY1XT001ASSY3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARTOG"; +secondCol = "GQY1XT001ARTOG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARQXX"; +secondCol = "GQY1XT001ARQXX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AR1EX"; +secondCol = "GQY1XT001AR1EX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQ7P5"; +secondCol = "GQY1XT001AQ7P5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APQN8"; +secondCol = "GQY1XT001APQN8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APIAZ"; +secondCol = "GQY1XT001APIAZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO87U"; +secondCol = "GQY1XT001AO87U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN6AX"; +secondCol = "GQY1XT001AN6AX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AM894"; +secondCol = "GQY1XT001AM894"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALN0X"; +secondCol = "GQY1XT001ALN0X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKNCJ"; +secondCol = "GQY1XT001AKNCJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKAZ4"; +secondCol = "GQY1XT001AKAZ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJD71"; +secondCol = "GQY1XT001AJD71"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJCX3"; +secondCol = "GQY1XT001AJCX3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHDII"; +secondCol = "GQY1XT001AHDII"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AH7BT"; +secondCol = "GQY1XT001AH7BT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AH30T"; +secondCol = "GQY1XT001AH30T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFS2O"; +secondCol = "GQY1XT001AFS2O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF7GX"; +secondCol = "GQY1XT001AF7GX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AE2FW"; +secondCol = "GQY1XT001AE2FW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9NHQ"; +secondCol = "GQY1XT001A9NHQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A79AD"; +secondCol = "GQY1XT001A79AD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A61DU"; +secondCol = "GQY1XT001A61DU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4ZU2"; +secondCol = "GQY1XT001A4ZU2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3P4Z"; +secondCol = "GQY1XT001A3P4Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3602"; +secondCol = "GQY1XT001A3602"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2IMA"; +secondCol = "GQY1XT001A2IMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2AND"; +secondCol = "GQY1XT001A2AND"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A28M3"; +secondCol = "GQY1XT001A28M3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A20I8"; +secondCol = "GQY1XT001A20I8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1KL2"; +secondCol = "GQY1XT001A1KL2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1EIN"; +secondCol = "GQY1XT001A1EIN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A18SE"; +secondCol = "GQY1XT001A18SE,GQY1XT001B93H9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0YTE"; +secondCol = "GQY1XT001A0YTE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0UZX"; +secondCol = "GQY1XT001A0UZX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A01Z9"; +secondCol = "GQY1XT001A01Z9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQPF6"; +secondCol = "GQY1XT001CQPF6,GQY1XT001DNOPX,GQY1XT001C7ZBS,GQY1XT001A5BSA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESPNA"; +secondCol = "GQY1XT001ESPNA,GQY1XT001A2QCH,GQY1XT001EMH8V,GQY1XT001D5QFL,GQY1XT001AXH6B,GQY1XT001B891R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFY7C"; +secondCol = "GQY1XT001EFY7C,GQY1XT001EU9QR,GQY1XT001BKSZV,GQY1XT001DW6Q2,GQY1XT001C0RPC,GQY1XT001DQBZ8,GQY1XT001AJ640,GQY1XT001C3B8Y,GQY1XT001EFICB,GQY1XT001D63IM,GQY1XT001B8TVQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C52ON"; +secondCol = "GQY1XT001C52ON,GQY1XT001B52BD,GQY1XT001C921A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFREK"; +secondCol = "GQY1XT001AFREK,GQY1XT001CQWTR,GQY1XT001DS1LZ,GQY1XT001DU0Z2,GQY1XT001CUSXU,GQY1XT001BC859,GQY1XT001B95D3,GQY1XT001B1Y7X,GQY1XT001BLIOJ,GQY1XT001BO2CO,GQY1XT001DMPTD,GQY1XT001DFI8F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2KKR"; +secondCol = "GQY1XT001A2KKR,GQY1XT001AP10P,GQY1XT001CO9W6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUDI9"; +secondCol = "GQY1XT001EUDI9,GQY1XT001E0M6X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQAG9"; +secondCol = "GQY1XT001EQAG9,GQY1XT001BYAM3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKQ9B"; +secondCol = "GQY1XT001EKQ9B,GQY1XT001CYPF4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGMEX"; +secondCol = "GQY1XT001EGMEX,GQY1XT001DLDRH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAPDN"; +secondCol = "GQY1XT001EAPDN,GQY1XT001AZAEE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAEI8"; +secondCol = "GQY1XT001EAEI8,GQY1XT001A35X5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZOIH"; +secondCol = "GQY1XT001DZOIH,GQY1XT001CBTG5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRPMC"; +secondCol = "GQY1XT001DRPMC,GQY1XT001BFDSY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD10D"; +secondCol = "GQY1XT001DD10D,GQY1XT001B2PPJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCLB4"; +secondCol = "GQY1XT001DCLB4,GQY1XT001AKN5M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBLYX"; +secondCol = "GQY1XT001DBLYX,GQY1XT001EGRSJ,GQY1XT001ENHVT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7R6H"; +secondCol = "GQY1XT001D7R6H,GQY1XT001BAT5E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5MDQ"; +secondCol = "GQY1XT001D5MDQ,GQY1XT001BFHI0,GQY1XT001CW4SG,GQY1XT001D1N1S,GQY1XT001BTT8L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH6AQ"; +secondCol = "GQY1XT001CH6AQ,GQY1XT001ESQJT,GQY1XT001A9KPE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFTQ9"; +secondCol = "GQY1XT001CFTQ9,GQY1XT001D51I0,GQY1XT001C9G4N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3X6G"; +secondCol = "GQY1XT001C3X6G,GQY1XT001DT7SW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0QXK"; +secondCol = "GQY1XT001C0QXK,GQY1XT001BLSNL,GQY1XT001CX6TA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BP0RL"; +secondCol = "GQY1XT001BP0RL,GQY1XT001BJ9RN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOY57"; +secondCol = "GQY1XT001BOY57,GQY1XT001C5NPP,GQY1XT001BPLEA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJS15"; +secondCol = "GQY1XT001BJS15,GQY1XT001EJBGR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDVFC"; +secondCol = "GQY1XT001BDVFC,GQY1XT001DXIXU,GQY1XT001EHGDI,GQY1XT001CRD36"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO05Y"; +secondCol = "GQY1XT001AO05Y,GQY1XT001BTM06"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZ0IY"; +secondCol = "GQY1XT001EZ0IY,GQY1XT001BZMT1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYPY1"; +secondCol = "GQY1XT001EYPY1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXYD1"; +secondCol = "GQY1XT001EXYD1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXLNQ"; +secondCol = "GQY1XT001EXLNQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX03D"; +secondCol = "GQY1XT001EX03D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWN6H"; +secondCol = "GQY1XT001EWN6H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWEG9"; +secondCol = "GQY1XT001EWEG9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWDMI"; +secondCol = "GQY1XT001EWDMI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVM9I"; +secondCol = "GQY1XT001EVM9I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVEML"; +secondCol = "GQY1XT001EVEML"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUUVE"; +secondCol = "GQY1XT001EUUVE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUUH0"; +secondCol = "GQY1XT001EUUH0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUI4W"; +secondCol = "GQY1XT001EUI4W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETVRK"; +secondCol = "GQY1XT001ETVRK,GQY1XT001BV4GJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETGG3"; +secondCol = "GQY1XT001ETGG3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETFRQ"; +secondCol = "GQY1XT001ETFRQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESSG9"; +secondCol = "GQY1XT001ESSG9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESMTR"; +secondCol = "GQY1XT001ESMTR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES38D"; +secondCol = "GQY1XT001ES38D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERZRE"; +secondCol = "GQY1XT001ERZRE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERS7R"; +secondCol = "GQY1XT001ERS7R,GQY1XT001CYR17"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERPCN"; +secondCol = "GQY1XT001ERPCN,GQY1XT001DNK3J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERK36"; +secondCol = "GQY1XT001ERK36,GQY1XT001A5E15"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERI8E"; +secondCol = "GQY1XT001ERI8E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERHVC"; +secondCol = "GQY1XT001ERHVC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERBDS"; +secondCol = "GQY1XT001ERBDS,GQY1XT001BEBNR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ER672"; +secondCol = "GQY1XT001ER672"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQQCT"; +secondCol = "GQY1XT001EQQCT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQPNK"; +secondCol = "GQY1XT001EQPNK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPXUN"; +secondCol = "GQY1XT001EPXUN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOXJY"; +secondCol = "GQY1XT001EOXJY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOG66"; +secondCol = "GQY1XT001EOG66"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENTKH"; +secondCol = "GQY1XT001ENTKH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENGO0"; +secondCol = "GQY1XT001ENGO0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMYG1"; +secondCol = "GQY1XT001EMYG1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMJ56"; +secondCol = "GQY1XT001EMJ56"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL6BO"; +secondCol = "GQY1XT001EL6BO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EL11Y"; +secondCol = "GQY1XT001EL11Y,GQY1XT001EPCBT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKMUS"; +secondCol = "GQY1XT001EKMUS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EIRP1"; +secondCol = "GQY1XT001EIRP1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI2G3"; +secondCol = "GQY1XT001EI2G3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI08T"; +secondCol = "GQY1XT001EI08T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHIY8"; +secondCol = "GQY1XT001EHIY8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH7HS"; +secondCol = "GQY1XT001EH7HS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH4XS"; +secondCol = "GQY1XT001EH4XS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGCSH"; +secondCol = "GQY1XT001EGCSH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG8TX"; +secondCol = "GQY1XT001EG8TX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFOMH"; +secondCol = "GQY1XT001EFOMH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFH1N"; +secondCol = "GQY1XT001EFH1N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFD5H"; +secondCol = "GQY1XT001EFD5H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFBVD"; +secondCol = "GQY1XT001EFBVD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFB3L"; +secondCol = "GQY1XT001EFB3L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EF074"; +secondCol = "GQY1XT001EF074"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EETIS"; +secondCol = "GQY1XT001EETIS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEKHZ"; +secondCol = "GQY1XT001EEKHZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EE6EW"; +secondCol = "GQY1XT001EE6EW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDZ0Y"; +secondCol = "GQY1XT001EDZ0Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDOTS"; +secondCol = "GQY1XT001EDOTS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED3XA"; +secondCol = "GQY1XT001ED3XA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBVPB"; +secondCol = "GQY1XT001EBVPB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBDZ0"; +secondCol = "GQY1XT001EBDZ0,GQY1XT001D65KY,GQY1XT001AIINW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBD2E"; +secondCol = "GQY1XT001EBD2E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAZ0R"; +secondCol = "GQY1XT001EAZ0R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAIUO"; +secondCol = "GQY1XT001EAIUO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E3APG"; +secondCol = "GQY1XT001E3APG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1YLT"; +secondCol = "GQY1XT001E1YLT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E11Z6"; +secondCol = "GQY1XT001E11Z6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0NF1"; +secondCol = "GQY1XT001E0NF1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZLBF"; +secondCol = "GQY1XT001DZLBF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ3WH"; +secondCol = "GQY1XT001DZ3WH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZ0YL"; +secondCol = "GQY1XT001DZ0YL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY5A4"; +secondCol = "GQY1XT001DY5A4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY3E7"; +secondCol = "GQY1XT001DY3E7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXHGE"; +secondCol = "GQY1XT001DXHGE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXH1N"; +secondCol = "GQY1XT001DXH1N,GQY1XT001BHRS7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX618"; +secondCol = "GQY1XT001DX618,GQY1XT001BBK05"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DV9A2"; +secondCol = "GQY1XT001DV9A2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DV1JX"; +secondCol = "GQY1XT001DV1JX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUYA6"; +secondCol = "GQY1XT001DUYA6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUKLW"; +secondCol = "GQY1XT001DUKLW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU09X"; +secondCol = "GQY1XT001DU09X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTGU0"; +secondCol = "GQY1XT001DTGU0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSN5G"; +secondCol = "GQY1XT001DSN5G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSLA5"; +secondCol = "GQY1XT001DSLA5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRU1T"; +secondCol = "GQY1XT001DRU1T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPY63"; +secondCol = "GQY1XT001DPY63"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DPE3X"; +secondCol = "GQY1XT001DPE3X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DP0JO"; +secondCol = "GQY1XT001DP0JO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOY1X"; +secondCol = "GQY1XT001DOY1X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOWC4"; +secondCol = "GQY1XT001DOWC4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DO8JK"; +secondCol = "GQY1XT001DO8JK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DO5K9"; +secondCol = "GQY1XT001DO5K9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DO0UV"; +secondCol = "GQY1XT001DO0UV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMXH6"; +secondCol = "GQY1XT001DMXH6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMVV9"; +secondCol = "GQY1XT001DMVV9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DM438"; +secondCol = "GQY1XT001DM438"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLHT6"; +secondCol = "GQY1XT001DLHT6,GQY1XT001BGJO9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLEJH"; +secondCol = "GQY1XT001DLEJH,GQY1XT001E4A0L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL4E7"; +secondCol = "GQY1XT001DL4E7,GQY1XT001BLE8S,GQY1XT001A1W8H,GQY1XT001A0CD5,GQY1XT001D3BV4,GQY1XT001CXUL5,GQY1XT001BMAD5,GQY1XT001BD4ZJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL25U"; +secondCol = "GQY1XT001DL25U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKSRV"; +secondCol = "GQY1XT001DKSRV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKLMW"; +secondCol = "GQY1XT001DKLMW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJ4FI"; +secondCol = "GQY1XT001DJ4FI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGZES"; +secondCol = "GQY1XT001DGZES"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGTAF"; +secondCol = "GQY1XT001DGTAF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGRU5"; +secondCol = "GQY1XT001DGRU5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DG30A"; +secondCol = "GQY1XT001DG30A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFJGD"; +secondCol = "GQY1XT001DFJGD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFHOP"; +secondCol = "GQY1XT001DFHOP,GQY1XT001BZYTQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFBTA"; +secondCol = "GQY1XT001DFBTA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF70T"; +secondCol = "GQY1XT001DF70T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEB0Q"; +secondCol = "GQY1XT001DEB0Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDVL1"; +secondCol = "GQY1XT001DDVL1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DDUZD"; +secondCol = "GQY1XT001DDUZD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD4N2"; +secondCol = "GQY1XT001DD4N2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCJII"; +secondCol = "GQY1XT001DCJII"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCAT8"; +secondCol = "GQY1XT001DCAT8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBA8M"; +secondCol = "GQY1XT001DBA8M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAI5C"; +secondCol = "GQY1XT001DAI5C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9S3I"; +secondCol = "GQY1XT001D9S3I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9OYH"; +secondCol = "GQY1XT001D9OYH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8ZVZ"; +secondCol = "GQY1XT001D8ZVZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8WTL"; +secondCol = "GQY1XT001D8WTL,GQY1XT001CJ0AD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8UUW"; +secondCol = "GQY1XT001D8UUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D88NT"; +secondCol = "GQY1XT001D88NT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7ZIX"; +secondCol = "GQY1XT001D7ZIX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7FAQ"; +secondCol = "GQY1XT001D7FAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7A8I"; +secondCol = "GQY1XT001D7A8I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D661K"; +secondCol = "GQY1XT001D661K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D64ZW"; +secondCol = "GQY1XT001D64ZW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5YW6"; +secondCol = "GQY1XT001D5YW6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5N31"; +secondCol = "GQY1XT001D5N31"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5E9Q"; +secondCol = "GQY1XT001D5E9Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D58KF"; +secondCol = "GQY1XT001D58KF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4UWX"; +secondCol = "GQY1XT001D4UWX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4OM4"; +secondCol = "GQY1XT001D4OM4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4BZG"; +secondCol = "GQY1XT001D4BZG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3JIS"; +secondCol = "GQY1XT001D3JIS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1Q1F"; +secondCol = "GQY1XT001D1Q1F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1JTO"; +secondCol = "GQY1XT001D1JTO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1DR6"; +secondCol = "GQY1XT001D1DR6,GQY1XT001CAS0H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1C1C"; +secondCol = "GQY1XT001D1C1C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0Z1Y"; +secondCol = "GQY1XT001D0Z1Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D0SOX"; +secondCol = "GQY1XT001D0SOX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D03ZL"; +secondCol = "GQY1XT001D03ZL,GQY1XT001CZFC1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZL5R"; +secondCol = "GQY1XT001CZL5R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZHD0"; +secondCol = "GQY1XT001CZHD0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CY8ET"; +secondCol = "GQY1XT001CY8ET"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXWWL"; +secondCol = "GQY1XT001CXWWL,GQY1XT001BM0LN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXEXU"; +secondCol = "GQY1XT001CXEXU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX2B8"; +secondCol = "GQY1XT001CX2B8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CWDSO"; +secondCol = "GQY1XT001CWDSO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW5HC"; +secondCol = "GQY1XT001CW5HC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVKHJ"; +secondCol = "GQY1XT001CVKHJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUNPP"; +secondCol = "GQY1XT001CUNPP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU5SJ"; +secondCol = "GQY1XT001CU5SJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CT30S"; +secondCol = "GQY1XT001CT30S,GQY1XT001AQGXN,GQY1XT001ALMBN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSL5I"; +secondCol = "GQY1XT001CSL5I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CS1FN"; +secondCol = "GQY1XT001CS1FN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRDHR"; +secondCol = "GQY1XT001CRDHR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQV4Q"; +secondCol = "GQY1XT001CQV4Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQNHC"; +secondCol = "GQY1XT001CQNHC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPKJR"; +secondCol = "GQY1XT001CPKJR,GQY1XT001BX5SP,GQY1XT001A9DXY,GQY1XT001CL9KU,GQY1XT001AMUCK,GQY1XT001EZ27A,GQY1XT001DH8UN,GQY1XT001B0FNR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO1K4"; +secondCol = "GQY1XT001CO1K4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNH3Y"; +secondCol = "GQY1XT001CNH3Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMZX0"; +secondCol = "GQY1XT001CMZX0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMT5M"; +secondCol = "GQY1XT001CMT5M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMC8Q"; +secondCol = "GQY1XT001CMC8Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMBQP"; +secondCol = "GQY1XT001CMBQP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM05N"; +secondCol = "GQY1XT001CM05N,GQY1XT001BP0NE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CK32O"; +secondCol = "GQY1XT001CK32O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CINU1"; +secondCol = "GQY1XT001CINU1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIC4L"; +secondCol = "GQY1XT001CIC4L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHGBL"; +secondCol = "GQY1XT001CHGBL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFKR3"; +secondCol = "GQY1XT001CFKR3,GQY1XT001B7PXJ,GQY1XT001ALMJN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEUY5"; +secondCol = "GQY1XT001CEUY5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDLHY"; +secondCol = "GQY1XT001CDLHY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDAP7"; +secondCol = "GQY1XT001CDAP7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCY5K"; +secondCol = "GQY1XT001CCY5K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CCHZC"; +secondCol = "GQY1XT001CCHZC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CC8Y4"; +secondCol = "GQY1XT001CC8Y4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAY17"; +secondCol = "GQY1XT001CAY17"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CA81N"; +secondCol = "GQY1XT001CA81N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CA6LU"; +secondCol = "GQY1XT001CA6LU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9LY6"; +secondCol = "GQY1XT001C9LY6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8B04"; +secondCol = "GQY1XT001C8B04"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C89WT"; +secondCol = "GQY1XT001C89WT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7NIM"; +secondCol = "GQY1XT001C7NIM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7IR0"; +secondCol = "GQY1XT001C7IR0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7572"; +secondCol = "GQY1XT001C7572"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6N6K"; +secondCol = "GQY1XT001C6N6K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5XMJ"; +secondCol = "GQY1XT001C5XMJ,GQY1XT001CGNGQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5XB9"; +secondCol = "GQY1XT001C5XB9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5C1Z"; +secondCol = "GQY1XT001C5C1Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4RVB"; +secondCol = "GQY1XT001C4RVB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4EBJ"; +secondCol = "GQY1XT001C4EBJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C4DLZ"; +secondCol = "GQY1XT001C4DLZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C42O2"; +secondCol = "GQY1XT001C42O2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C41Q3"; +secondCol = "GQY1XT001C41Q3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3ZUM"; +secondCol = "GQY1XT001C3ZUM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3YP2"; +secondCol = "GQY1XT001C3YP2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3JSH"; +secondCol = "GQY1XT001C3JSH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3I5Y"; +secondCol = "GQY1XT001C3I5Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3C4K"; +secondCol = "GQY1XT001C3C4K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C338B"; +secondCol = "GQY1XT001C338B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2WHZ"; +secondCol = "GQY1XT001C2WHZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2DKZ"; +secondCol = "GQY1XT001C2DKZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1X1X"; +secondCol = "GQY1XT001C1X1X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1CBA"; +secondCol = "GQY1XT001C1CBA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C15GZ"; +secondCol = "GQY1XT001C15GZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0WU2"; +secondCol = "GQY1XT001C0WU2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0MK7"; +secondCol = "GQY1XT001C0MK7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0JER"; +secondCol = "GQY1XT001C0JER"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYZNI"; +secondCol = "GQY1XT001BYZNI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXZY4"; +secondCol = "GQY1XT001BXZY4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXRLW"; +secondCol = "GQY1XT001BXRLW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BWTCG"; +secondCol = "GQY1XT001BWTCG,GQY1XT001CJ114"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BV3MG"; +secondCol = "GQY1XT001BV3MG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUZ72"; +secondCol = "GQY1XT001BUZ72,GQY1XT001BZD9J,GQY1XT001BE2EH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUP8E"; +secondCol = "GQY1XT001BUP8E,GQY1XT001AXQ9T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUE45"; +secondCol = "GQY1XT001BUE45"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTYK2"; +secondCol = "GQY1XT001BTYK2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTV43"; +secondCol = "GQY1XT001BTV43"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BT3JN"; +secondCol = "GQY1XT001BT3JN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRRLA"; +secondCol = "GQY1XT001BRRLA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BREFK"; +secondCol = "GQY1XT001BREFK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQYLZ"; +secondCol = "GQY1XT001BQYLZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQMIR"; +secondCol = "GQY1XT001BQMIR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPY8I"; +secondCol = "GQY1XT001BPY8I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPJ6C"; +secondCol = "GQY1XT001BPJ6C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPAEC"; +secondCol = "GQY1XT001BPAEC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNZ2F"; +secondCol = "GQY1XT001BNZ2F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNSFU"; +secondCol = "GQY1XT001BNSFU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNRCL"; +secondCol = "GQY1XT001BNRCL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMOQL"; +secondCol = "GQY1XT001BMOQL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMFOG"; +secondCol = "GQY1XT001BMFOG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BLN6A"; +secondCol = "GQY1XT001BLN6A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BL6MD"; +secondCol = "GQY1XT001BL6MD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BL1GO"; +secondCol = "GQY1XT001BL1GO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKY75"; +secondCol = "GQY1XT001BKY75"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJTZX"; +secondCol = "GQY1XT001BJTZX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ24E"; +secondCol = "GQY1XT001BJ24E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI7O5"; +secondCol = "GQY1XT001BI7O5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI6VE"; +secondCol = "GQY1XT001BI6VE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGT7L"; +secondCol = "GQY1XT001BGT7L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGHYK"; +secondCol = "GQY1XT001BGHYK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BG4OI"; +secondCol = "GQY1XT001BG4OI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEQ7K"; +secondCol = "GQY1XT001BEQ7K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEKC6"; +secondCol = "GQY1XT001BEKC6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCSKH"; +secondCol = "GQY1XT001BCSKH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BB8NC"; +secondCol = "GQY1XT001BB8NC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9X2U"; +secondCol = "GQY1XT001B9X2U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7V18"; +secondCol = "GQY1XT001B7V18"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6Z19"; +secondCol = "GQY1XT001B6Z19"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6H08"; +secondCol = "GQY1XT001B6H08"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5YKG"; +secondCol = "GQY1XT001B5YKG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5U3V"; +secondCol = "GQY1XT001B5U3V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5GBB"; +secondCol = "GQY1XT001B5GBB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4RK2"; +secondCol = "GQY1XT001B4RK2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4JGN"; +secondCol = "GQY1XT001B4JGN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B46L2"; +secondCol = "GQY1XT001B46L2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3S4A"; +secondCol = "GQY1XT001B3S4A,GQY1XT001BCX43,GQY1XT001CMOMY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B349K"; +secondCol = "GQY1XT001B349K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B24JY"; +secondCol = "GQY1XT001B24JY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B21UE"; +secondCol = "GQY1XT001B21UE,GQY1XT001AHR0R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B17UZ"; +secondCol = "GQY1XT001B17UZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0KSM"; +secondCol = "GQY1XT001B0KSM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZNS8"; +secondCol = "GQY1XT001AZNS8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZCFZ"; +secondCol = "GQY1XT001AZCFZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AY31C"; +secondCol = "GQY1XT001AY31C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AY2B7"; +secondCol = "GQY1XT001AY2B7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AX52M"; +secondCol = "GQY1XT001AX52M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWBPY"; +secondCol = "GQY1XT001AWBPY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW03O"; +secondCol = "GQY1XT001AW03O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVN7L"; +secondCol = "GQY1XT001AVN7L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVKKZ"; +secondCol = "GQY1XT001AVKKZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVARK"; +secondCol = "GQY1XT001AVARK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV8X9"; +secondCol = "GQY1XT001AV8X9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AV3Y6"; +secondCol = "GQY1XT001AV3Y6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUI53"; +secondCol = "GQY1XT001AUI53"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUEE4"; +secondCol = "GQY1XT001AUEE4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AU8KX"; +secondCol = "GQY1XT001AU8KX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATX0K"; +secondCol = "GQY1XT001ATX0K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AT3Y2"; +secondCol = "GQY1XT001AT3Y2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASVQN"; +secondCol = "GQY1XT001ASVQN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASD8S"; +secondCol = "GQY1XT001ASD8S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AS1SB"; +secondCol = "GQY1XT001AS1SB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQBXP"; +secondCol = "GQY1XT001AQBXP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APBB9"; +secondCol = "GQY1XT001APBB9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOQAZ"; +secondCol = "GQY1XT001AOQAZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOF14"; +secondCol = "GQY1XT001AOF14"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO7R0"; +secondCol = "GQY1XT001AO7R0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANIYW"; +secondCol = "GQY1XT001ANIYW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AN6MK"; +secondCol = "GQY1XT001AN6MK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALYPN"; +secondCol = "GQY1XT001ALYPN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ALP7S"; +secondCol = "GQY1XT001ALP7S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKD17"; +secondCol = "GQY1XT001AKD17"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJTRJ"; +secondCol = "GQY1XT001AJTRJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJB5H"; +secondCol = "GQY1XT001AJB5H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIVIO"; +secondCol = "GQY1XT001AIVIO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AI63N"; +secondCol = "GQY1XT001AI63N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHPOD"; +secondCol = "GQY1XT001AHPOD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHK6O"; +secondCol = "GQY1XT001AHK6O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGTL4"; +secondCol = "GQY1XT001AGTL4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGKBL"; +secondCol = "GQY1XT001AGKBL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG68G"; +secondCol = "GQY1XT001AG68G"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEPK3"; +secondCol = "GQY1XT001AEPK3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AE53O"; +secondCol = "GQY1XT001AE53O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AE0CQ"; +secondCol = "GQY1XT001AE0CQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8SUO"; +secondCol = "GQY1XT001A8SUO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7RC7"; +secondCol = "GQY1XT001A7RC7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7POV"; +secondCol = "GQY1XT001A7POV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A78ET"; +secondCol = "GQY1XT001A78ET"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A74MB"; +secondCol = "GQY1XT001A74MB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6568"; +secondCol = "GQY1XT001A6568"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5I0H"; +secondCol = "GQY1XT001A5I0H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A47SX"; +secondCol = "GQY1XT001A47SX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3YSL"; +secondCol = "GQY1XT001A3YSL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3H9J"; +secondCol = "GQY1XT001A3H9J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A32GR"; +secondCol = "GQY1XT001A32GR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2OIZ"; +secondCol = "GQY1XT001A2OIZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2676"; +secondCol = "GQY1XT001A2676"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A21F1"; +secondCol = "GQY1XT001A21F1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1MK4"; +secondCol = "GQY1XT001A1MK4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1FU0"; +secondCol = "GQY1XT001A1FU0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1DTO"; +secondCol = "GQY1XT001A1DTO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYVBA"; +secondCol = "GQY1XT001CYVBA,GQY1XT001B9EHX,GQY1XT001BHNU5,GQY1XT001BRPLP,GQY1XT001EOYYY,GQY1XT001CZ6Y8,GQY1XT001EI53D,GQY1XT001CEBYE,GQY1XT001ET53S,GQY1XT001CAHMK,GQY1XT001D2YIR,GQY1XT001CZW8L,GQY1XT001AZ1CJ,GQY1XT001ETP94,GQY1XT001DW8ZQ,GQY1XT001DG5QU,GQY1XT001C3OB2,GQY1XT001A6ZBN,GQY1XT001C1ZJ3,GQY1XT001DKM32,GQY1XT001BK001,GQY1XT001AQHUK,GQY1XT001EJ2AV,GQY1XT001EEYCI,GQY1XT001BTYMA,GQY1XT001BO7ZH,GQY1XT001CLIEG,GQY1XT001EFB69,GQY1XT001EBYHJ,GQY1XT001BNI6E,GQY1XT001DWFTV,GQY1XT001B6SD9,GQY1XT001ALDJT,GQY1XT001CHDPW,GQY1XT001AHWAO,GQY1XT001CC0A6,GQY1XT001ENMKV,GQY1XT001DWLNE,GQY1XT001EGCRS,GQY1XT001CI85E,GQY1XT001E2ZGH,GQY1XT001D2RK7,GQY1XT001CECMB,GQY1XT001BODTX,GQY1XT001D3O3I,GQY1XT001AQTWL,GQY1XT001CTHOG,GQY1XT001E0HJ6,GQY1XT001BFQCO,GQY1XT001CBOKM,GQY1XT001CYY6E,GQY1XT001CQV6H,GQY1XT001DX1ZF,GQY1XT001CRXU1,GQY1XT001CBY6A,GQY1XT001DRAJJ,GQY1XT001DRAMK,GQY1XT001ETIR2,GQY1XT001E25JL,GQY1XT001ALXAH,GQY1XT001DI491,GQY1XT001BNAHP,GQY1XT001BC4HP,GQY1XT001D6F38,GQY1XT001DQ36C,GQY1XT001DYMAU,GQY1XT001DSQSB,GQY1XT001A6HZW,GQY1XT001BVVP4,GQY1XT001BEVGR,GQY1XT001AY78C,GQY1XT001DKUNX,GQY1XT001A0CWV,GQY1XT001A47D0,GQY1XT001DIPQG,GQY1XT001BWJ8O,GQY1XT001DL7KI,GQY1XT001D7RH9,GQY1XT001EKOFJ,GQY1XT001EUVYU,GQY1XT001CKOKO,GQY1XT001D99DS,GQY1XT001BL530,GQY1XT001AWOGR,GQY1XT001DU3W5,GQY1XT001AR1PX,GQY1XT001BJLID,GQY1XT001DZB3B,GQY1XT001CD0TB,GQY1XT001CKXDL,GQY1XT001C4962,GQY1XT001DTDR2,GQY1XT001EWNQT,GQY1XT001EGLS1,GQY1XT001AUOS0,GQY1XT001DHF78,GQY1XT001COQMG,GQY1XT001BPPFG,GQY1XT001A6MLT,GQY1XT001CGJZF,GQY1XT001EYDU6,GQY1XT001C74TE,GQY1XT001CMCVB,GQY1XT001EUUIE,GQY1XT001BY0HA,GQY1XT001DU9XX,GQY1XT001DNBCB,GQY1XT001D41VX,GQY1XT001BQFK7,GQY1XT001CVLJR,GQY1XT001BNPXZ,GQY1XT001EXJ8Z,GQY1XT001CLYFY,GQY1XT001C4K9V,GQY1XT001A41Y5,GQY1XT001C4YL2,GQY1XT001B29IZ,GQY1XT001DGZD3,GQY1XT001AO37Z,GQY1XT001ECZM0,GQY1XT001BL966,GQY1XT001D4O99,GQY1XT001DMEB5,GQY1XT001ERO7E,GQY1XT001DB5N1,GQY1XT001DJPJO,GQY1XT001CZ1ON,GQY1XT001AEZ2O,GQY1XT001D7051,GQY1XT001DZPHT,GQY1XT001A1OVJ,GQY1XT001CHG05,GQY1XT001BOKS3,GQY1XT001ES0QR,GQY1XT001EXOXO,GQY1XT001B8ALO,GQY1XT001ETC8O,GQY1XT001BO94D,GQY1XT001EE9IU,GQY1XT001BZFON,GQY1XT001A8HEF,GQY1XT001B3B4L,GQY1XT001DFWRT,GQY1XT001CFPME,GQY1XT001EF0NJ,GQY1XT001E0TCW,GQY1XT001CUWM4,GQY1XT001DIAE0,GQY1XT001BKEHL,GQY1XT001DA9IH,GQY1XT001B8DRZ,GQY1XT001D34EA,GQY1XT001BH4BN,GQY1XT001C5KB4,GQY1XT001C220U,GQY1XT001CBLMG,GQY1XT001E5PNE,GQY1XT001CAH61,GQY1XT001CPW1R,GQY1XT001BR19R,GQY1XT001B94FQ,GQY1XT001CU3S5,GQY1XT001D074G,GQY1XT001EPTGC,GQY1XT001A8CBC,GQY1XT001CS2JF,GQY1XT001EMVFC,GQY1XT001A52SX,GQY1XT001EYYTB,GQY1XT001A2OHL,GQY1XT001EQPSI,GQY1XT001EHO66,GQY1XT001CJXGO,GQY1XT001AIDUC,GQY1XT001BZCAQ,GQY1XT001AP1UH,GQY1XT001D5VUI,GQY1XT001CE7YQ,GQY1XT001DAUZU,GQY1XT001EJXMI,GQY1XT001DS3I0,GQY1XT001A0EC4,GQY1XT001COSRE,GQY1XT001CUUM3,GQY1XT001CCVNT,GQY1XT001CPZBV,GQY1XT001E1RX5,GQY1XT001AO0HM,GQY1XT001AT4UA,GQY1XT001EIZ02,GQY1XT001BIVWV,GQY1XT001CQBQS,GQY1XT001BW8RF,GQY1XT001DXBRV,GQY1XT001EA4O2,GQY1XT001A7H1C,GQY1XT001BWBYG,GQY1XT001EITSP,GQY1XT001AHX2M,GQY1XT001D3ZNH,GQY1XT001B81HW,GQY1XT001CMBNS,GQY1XT001BC1ZN,GQY1XT001BZKIO,GQY1XT001EFZ27,GQY1XT001CLD7Z,GQY1XT001CIBDC,GQY1XT001D2CHZ,GQY1XT001CSTO6,GQY1XT001A3INK,GQY1XT001C6E0N,GQY1XT001BQSN8,GQY1XT001D571U,GQY1XT001D42E5,GQY1XT001ALOSI,GQY1XT001EPVU9,GQY1XT001BPVBS,GQY1XT001EXM1V,GQY1XT001DZWCL,GQY1XT001AOC8L,GQY1XT001EX82M,GQY1XT001CXFFS,GQY1XT001A22YJ,GQY1XT001C9SOF,GQY1XT001AHC1J,GQY1XT001EEDP4,GQY1XT001CRR5P,GQY1XT001AQA4L,GQY1XT001BS4ZW,GQY1XT001BYMO0,GQY1XT001CCLK5,GQY1XT001CKYBK,GQY1XT001D07EZ,GQY1XT001CNXUM,GQY1XT001EFWNE,GQY1XT001B5HMT,GQY1XT001APVMX,GQY1XT001BO277,GQY1XT001B7OD9,GQY1XT001D63UQ,GQY1XT001BODTJ,GQY1XT001CME4R,GQY1XT001BT6W6,GQY1XT001A79G1,GQY1XT001C6LTQ,GQY1XT001AMON8,GQY1XT001DO56L,GQY1XT001C5IXG,GQY1XT001E1FSI,GQY1XT001EXUEM,GQY1XT001CJLSS,GQY1XT001BCJMS,GQY1XT001CYZ10,GQY1XT001E1SIY,GQY1XT001E3CFV,GQY1XT001DE0BV,GQY1XT001EDJ6I,GQY1XT001BWPLN,GQY1XT001AXJON,GQY1XT001D3XN5,GQY1XT001BZO64,GQY1XT001DFDTX,GQY1XT001DDBT8,GQY1XT001AQDH6,GQY1XT001DXIZ7,GQY1XT001C4MQZ,GQY1XT001D47PC,GQY1XT001BJ5C8,GQY1XT001BINZ3,GQY1XT001B9TSM,GQY1XT001CG3X6,GQY1XT001C435F,GQY1XT001AVZ0T,GQY1XT001EZ7WT,GQY1XT001EJXNT,GQY1XT001EF66K,GQY1XT001C9FX7,GQY1XT001A1XW0,GQY1XT001B77HO,GQY1XT001BVZ51,GQY1XT001DVEDH,GQY1XT001CJ52E,GQY1XT001CJNEQ,GQY1XT001AXBTC,GQY1XT001BBT2E,GQY1XT001BM7NP,GQY1XT001CF5BE,GQY1XT001CK1NF,GQY1XT001DPLKZ,GQY1XT001C0F0F,GQY1XT001CIDQK,GQY1XT001EV3D0,GQY1XT001ERVOP,GQY1XT001D0604,GQY1XT001C19U0,GQY1XT001D9XGZ,GQY1XT001B34D7,GQY1XT001AKP5T,GQY1XT001CL0VY,GQY1XT001A4I9S,GQY1XT001EZ518,GQY1XT001ERW1J,GQY1XT001EDLXD,GQY1XT001ECGUU,GQY1XT001DW1JY,GQY1XT001DPB8H,GQY1XT001CXVE8,GQY1XT001CO856,GQY1XT001C3RD1,GQY1XT001C3B2A,GQY1XT001BUPK4,GQY1XT001B57M7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTASU"; +secondCol = "GQY1XT001BTASU,GQY1XT001BRJEH,GQY1XT001B4WUD,GQY1XT001EYIZS,GQY1XT001EZIO9,GQY1XT001BJM9H,GQY1XT001AIN8F,GQY1XT001C8RLW,GQY1XT001EAQC0,GQY1XT001DE68F,GQY1XT001ENJLF,GQY1XT001BNK8C,GQY1XT001EN24J,GQY1XT001BBL1Y,GQY1XT001DJTJ7,GQY1XT001BW3MG,GQY1XT001EJUJX,GQY1XT001EGT8C,GQY1XT001AF0CK,GQY1XT001ES36K,GQY1XT001DT1HY,GQY1XT001B2ULL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIUY1"; +secondCol = "GQY1XT001AIUY1,GQY1XT001CJ7DH,GQY1XT001ER7A8,GQY1XT001D7UM8,GQY1XT001D3W6Z,GQY1XT001CJHT6,GQY1XT001DCD7C,GQY1XT001C9O8X,GQY1XT001C35FV,GQY1XT001AJQXD,GQY1XT001A5DGD,GQY1XT001DG7NX,GQY1XT001DBBTC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C1WR1"; +secondCol = "GQY1XT001C1WR1,GQY1XT001C8EPH,GQY1XT001DZPV0,GQY1XT001APD2H,GQY1XT001BFI5I,GQY1XT001DQ19A,GQY1XT001B6M7A,GQY1XT001C9PWX,GQY1XT001BUQ6I,GQY1XT001A3GTK,GQY1XT001AK3IL,GQY1XT001ETCIQ,GQY1XT001C3HMR,GQY1XT001EDEAK,GQY1XT001C2GP2,GQY1XT001ESN9P,GQY1XT001COH4P,GQY1XT001B2PFZ,GQY1XT001DTCR1,GQY1XT001AZU4S,GQY1XT001BCYZ3,GQY1XT001AJ594,GQY1XT001B50WP,GQY1XT001EMGWS,GQY1XT001AVZYA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYWY5"; +secondCol = "GQY1XT001BYWY5,GQY1XT001CVXYN,GQY1XT001CWP7H,GQY1XT001B7CCZ,GQY1XT001B35IW,GQY1XT001AU02F,GQY1XT001BV0MY,GQY1XT001CF94S,GQY1XT001ESJJK,GQY1XT001ENW3B,GQY1XT001BNKGZ,GQY1XT001BL7ZE,GQY1XT001CU91W,GQY1XT001C1S97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJP5K"; +secondCol = "GQY1XT001EJP5K,GQY1XT001DJH0R,GQY1XT001DRSXQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZDID"; +secondCol = "GQY1XT001DZDID,GQY1XT001BR9KO,GQY1XT001DYVPF,GQY1XT001AQQCG,GQY1XT001AO0I0,GQY1XT001CUZOW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DB2M7"; +secondCol = "GQY1XT001DB2M7,GQY1XT001AHN00,GQY1XT001CCL02"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C121L"; +secondCol = "GQY1XT001C121L,GQY1XT001CX9OG,GQY1XT001DFDCU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9V6K"; +secondCol = "GQY1XT001A9V6K,GQY1XT001BGJS6,GQY1XT001A7RTW,GQY1XT001DWBDM,GQY1XT001EYHWM,GQY1XT001BVPDC,GQY1XT001A9L8A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5KO8"; +secondCol = "GQY1XT001A5KO8,GQY1XT001E3LBT,GQY1XT001D91KV,GQY1XT001CGFXQ,GQY1XT001A2024"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZFNC"; +secondCol = "GQY1XT001DZFNC,GQY1XT001AIQIT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMOMH"; +secondCol = "GQY1XT001DMOMH,GQY1XT001A3P8I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJWET"; +secondCol = "GQY1XT001DJWET,GQY1XT001D952B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTRXH"; +secondCol = "GQY1XT001CTRXH,GQY1XT001CM306,GQY1XT001AI1ZF,GQY1XT001BU0VV,GQY1XT001BHNPZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPZP8"; +secondCol = "GQY1XT001CPZP8,GQY1XT001DL02E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGFIZ"; +secondCol = "GQY1XT001CGFIZ,GQY1XT001CO3N3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9IAF"; +secondCol = "GQY1XT001C9IAF,GQY1XT001CJB67"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZ0KL"; +secondCol = "GQY1XT001BZ0KL,GQY1XT001EJTKA,GQY1XT001BB4RV,GQY1XT001BLZ3L,GQY1XT001DZY6B,GQY1XT001CXN0E,GQY1XT001A7Q98"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKB10"; +secondCol = "GQY1XT001BKB10,GQY1XT001CG9KZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5THT"; +secondCol = "GQY1XT001B5THT,GQY1XT001EIHZ1,GQY1XT001C2EIF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3WU9"; +secondCol = "GQY1XT001B3WU9,GQY1XT001BJG0Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFW4W"; +secondCol = "GQY1XT001AFW4W,GQY1XT001EBLID"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A355Y"; +secondCol = "GQY1XT001A355Y,GQY1XT001A9MJ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A1RVC"; +secondCol = "GQY1XT001A1RVC,GQY1XT001DDDMC,GQY1XT001ECC3N,GQY1XT001BDW4S,GQY1XT001ANN09"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZH20"; +secondCol = "GQY1XT001EZH20"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EYY1K"; +secondCol = "GQY1XT001EYY1K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXR5S"; +secondCol = "GQY1XT001EXR5S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EXG9I"; +secondCol = "GQY1XT001EXG9I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX3OQ"; +secondCol = "GQY1XT001EX3OQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWOFQ"; +secondCol = "GQY1XT001EWOFQ,GQY1XT001EKBA0,GQY1XT001C5HWV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVIXR"; +secondCol = "GQY1XT001EVIXR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVIL3"; +secondCol = "GQY1XT001EVIL3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EV5Z1"; +secondCol = "GQY1XT001EV5Z1,GQY1XT001DOS5B,GQY1XT001D7G15,GQY1XT001CS1QL,GQY1XT001CH23F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUB8F"; +secondCol = "GQY1XT001EUB8F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU98R"; +secondCol = "GQY1XT001EU98R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES883"; +secondCol = "GQY1XT001ES883"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ES4H3"; +secondCol = "GQY1XT001ES4H3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERRVZ"; +secondCol = "GQY1XT001ERRVZ,GQY1XT001D97UK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ER7KJ"; +secondCol = "GQY1XT001ER7KJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQUF9"; +secondCol = "GQY1XT001EQUF9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQKSR"; +secondCol = "GQY1XT001EQKSR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQ4T5"; +secondCol = "GQY1XT001EQ4T5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQ0GM"; +secondCol = "GQY1XT001EQ0GM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EP3RW"; +secondCol = "GQY1XT001EP3RW,GQY1XT001A5B9U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOJ97"; +secondCol = "GQY1XT001EOJ97"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EOBZ4"; +secondCol = "GQY1XT001EOBZ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENE25"; +secondCol = "GQY1XT001ENE25"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMLHZ"; +secondCol = "GQY1XT001EMLHZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMBCT"; +secondCol = "GQY1XT001EMBCT,GQY1XT001AENKW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELGIG"; +secondCol = "GQY1XT001ELGIG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELA3R"; +secondCol = "GQY1XT001ELA3R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKNJB"; +secondCol = "GQY1XT001EKNJB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EK7F9"; +secondCol = "GQY1XT001EK7F9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EIC6B"; +secondCol = "GQY1XT001EIC6B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI5XA"; +secondCol = "GQY1XT001EI5XA,GQY1XT001DVASI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHJ1A"; +secondCol = "GQY1XT001EHJ1A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGMQR"; +secondCol = "GQY1XT001EGMQR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG00X"; +secondCol = "GQY1XT001EG00X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFJCS"; +secondCol = "GQY1XT001EFJCS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDJOE"; +secondCol = "GQY1XT001EDJOE,GQY1XT001C29Z3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED0X4"; +secondCol = "GQY1XT001ED0X4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED0VN"; +secondCol = "GQY1XT001ED0VN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECIAV"; +secondCol = "GQY1XT001ECIAV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC4HB"; +secondCol = "GQY1XT001EC4HB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC08C"; +secondCol = "GQY1XT001EC08C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBT8D"; +secondCol = "GQY1XT001EBT8D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBJ1Q"; +secondCol = "GQY1XT001EBJ1Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAYKP"; +secondCol = "GQY1XT001EAYKP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA3K9"; +secondCol = "GQY1XT001EA3K9,GQY1XT001DZ70O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1XHD"; +secondCol = "GQY1XT001E1XHD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZXAF"; +secondCol = "GQY1XT001DZXAF,GQY1XT001DAKVZ,GQY1XT001BGP5L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZPZR"; +secondCol = "GQY1XT001DZPZR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZMBP"; +secondCol = "GQY1XT001DZMBP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZGO2"; +secondCol = "GQY1XT001DZGO2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYWDT"; +secondCol = "GQY1XT001DYWDT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DY46X"; +secondCol = "GQY1XT001DY46X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXEQX"; +secondCol = "GQY1XT001DXEQX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXDO1"; +secondCol = "GQY1XT001DXDO1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DX5H7"; +secondCol = "GQY1XT001DX5H7,GQY1XT001CUZCS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWFVW"; +secondCol = "GQY1XT001DWFVW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWEPH"; +secondCol = "GQY1XT001DWEPH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DV49J"; +secondCol = "GQY1XT001DV49J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DU0CH"; +secondCol = "GQY1XT001DU0CH,GQY1XT001B81F6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DT67S"; +secondCol = "GQY1XT001DT67S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSZ1E"; +secondCol = "GQY1XT001DSZ1E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSJH6"; +secondCol = "GQY1XT001DSJH6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DSI9W"; +secondCol = "GQY1XT001DSI9W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DS53E"; +secondCol = "GQY1XT001DS53E,GQY1XT001DIXIV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRXCI"; +secondCol = "GQY1XT001DRXCI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DRTF9"; +secondCol = "GQY1XT001DRTF9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR67U"; +secondCol = "GQY1XT001DR67U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQSZV"; +secondCol = "GQY1XT001DQSZV,GQY1XT001AMN30"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQKPP"; +secondCol = "GQY1XT001DQKPP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQIAS"; +secondCol = "GQY1XT001DQIAS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ59I"; +secondCol = "GQY1XT001DQ59I,GQY1XT001CDZQM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNKWG"; +secondCol = "GQY1XT001DNKWG,GQY1XT001D9VWV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNEQK"; +secondCol = "GQY1XT001DNEQK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN8J2"; +secondCol = "GQY1XT001DN8J2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DM9WG"; +secondCol = "GQY1XT001DM9WG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLFTW"; +secondCol = "GQY1XT001DLFTW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL09H"; +secondCol = "GQY1XT001DL09H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJPDU"; +secondCol = "GQY1XT001DJPDU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJOS0"; +secondCol = "GQY1XT001DJOS0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJ04A"; +secondCol = "GQY1XT001DJ04A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHTSP"; +secondCol = "GQY1XT001DHTSP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DH4UX"; +secondCol = "GQY1XT001DH4UX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DGQL7"; +secondCol = "GQY1XT001DGQL7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEW4M"; +secondCol = "GQY1XT001DEW4M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEKWE"; +secondCol = "GQY1XT001DEKWE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD84B"; +secondCol = "GQY1XT001DD84B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCQ93"; +secondCol = "GQY1XT001DCQ93"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DC0OE"; +secondCol = "GQY1XT001DC0OE,GQY1XT001D606O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBXXE"; +secondCol = "GQY1XT001DBXXE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAO2N"; +secondCol = "GQY1XT001DAO2N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAG5U"; +secondCol = "GQY1XT001DAG5U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9XLV"; +secondCol = "GQY1XT001D9XLV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8BJE"; +secondCol = "GQY1XT001D8BJE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D89JO"; +secondCol = "GQY1XT001D89JO,GQY1XT001C88HY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6KIF"; +secondCol = "GQY1XT001D6KIF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5NKF"; +secondCol = "GQY1XT001D5NKF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4LHV"; +secondCol = "GQY1XT001D4LHV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D2F94"; +secondCol = "GQY1XT001D2F94"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1U5E"; +secondCol = "GQY1XT001D1U5E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1B3E"; +secondCol = "GQY1XT001D1B3E,GQY1XT001A0XRM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYCXN"; +secondCol = "GQY1XT001CYCXN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXQF6"; +secondCol = "GQY1XT001CXQF6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXBCO"; +secondCol = "GQY1XT001CXBCO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVM86"; +secondCol = "GQY1XT001CVM86"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU7DV"; +secondCol = "GQY1XT001CU7DV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU69Y"; +secondCol = "GQY1XT001CU69Y,GQY1XT001CB40Z,GQY1XT001BQ9BK,GQY1XT001AYSE1,GQY1XT001A1L8I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTE6X"; +secondCol = "GQY1XT001CTE6X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSQSO"; +secondCol = "GQY1XT001CSQSO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSNC3"; +secondCol = "GQY1XT001CSNC3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSIJ8"; +secondCol = "GQY1XT001CSIJ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQ8Q3"; +secondCol = "GQY1XT001CQ8Q3,GQY1XT001DWJTA,GQY1XT001CGB5H,GQY1XT001B07YJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPHL7"; +secondCol = "GQY1XT001CPHL7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CP7MB"; +secondCol = "GQY1XT001CP7MB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNOAV"; +secondCol = "GQY1XT001CNOAV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN6GC"; +secondCol = "GQY1XT001CN6GC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN0IU"; +secondCol = "GQY1XT001CN0IU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMNKQ"; +secondCol = "GQY1XT001CMNKQ,GQY1XT001AQLZN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM77U"; +secondCol = "GQY1XT001CM77U,GQY1XT001AGGH4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLSTW"; +secondCol = "GQY1XT001CLSTW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLFS0"; +secondCol = "GQY1XT001CLFS0,GQY1XT001A3GIS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CL10B"; +secondCol = "GQY1XT001CL10B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJSM2"; +secondCol = "GQY1XT001CJSM2,GQY1XT001BBJWB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJO9T"; +secondCol = "GQY1XT001CJO9T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJEIW"; +secondCol = "GQY1XT001CJEIW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJE27"; +secondCol = "GQY1XT001CJE27"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIZFZ"; +secondCol = "GQY1XT001CIZFZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIIDQ"; +secondCol = "GQY1XT001CIIDQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHSKR"; +secondCol = "GQY1XT001CHSKR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHNIE"; +secondCol = "GQY1XT001CHNIE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHA5C"; +secondCol = "GQY1XT001CHA5C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH931"; +secondCol = "GQY1XT001CH931"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CG1BN"; +secondCol = "GQY1XT001CG1BN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFXK7"; +secondCol = "GQY1XT001CFXK7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFFM5"; +secondCol = "GQY1XT001CFFM5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDZBY"; +secondCol = "GQY1XT001CDZBY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDT8V"; +secondCol = "GQY1XT001CDT8V,GQY1XT001A5ED3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDROF"; +secondCol = "GQY1XT001CDROF,GQY1XT001AKPMM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAS6O"; +secondCol = "GQY1XT001CAS6O,GQY1XT001B2KLC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7BVW"; +secondCol = "GQY1XT001C7BVW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6ZWZ"; +secondCol = "GQY1XT001C6ZWZ,GQY1XT001ETG4D,GQY1XT001DL17F,GQY1XT001DHPA1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6FPS"; +secondCol = "GQY1XT001C6FPS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5LCN"; +secondCol = "GQY1XT001C5LCN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2O06"; +secondCol = "GQY1XT001C2O06"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2EJB"; +secondCol = "GQY1XT001C2EJB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C264J"; +secondCol = "GQY1XT001C264J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C18TC"; +secondCol = "GQY1XT001C18TC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0KVO"; +secondCol = "GQY1XT001C0KVO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZQO1"; +secondCol = "GQY1XT001BZQO1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYZTU"; +secondCol = "GQY1XT001BYZTU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYB00"; +secondCol = "GQY1XT001BYB00"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXW2F"; +secondCol = "GQY1XT001BXW2F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXRFA"; +secondCol = "GQY1XT001BXRFA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXOLD"; +secondCol = "GQY1XT001BXOLD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BX8O3"; +secondCol = "GQY1XT001BX8O3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVDRX"; +secondCol = "GQY1XT001BVDRX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUZKF"; +secondCol = "GQY1XT001BUZKF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUM3E"; +secondCol = "GQY1XT001BUM3E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BUEU9"; +secondCol = "GQY1XT001BUEU9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BTTQZ"; +secondCol = "GQY1XT001BTTQZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSELK"; +secondCol = "GQY1XT001BSELK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BP88E"; +secondCol = "GQY1XT001BP88E,GQY1XT001BOIQI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOGRP"; +secondCol = "GQY1XT001BOGRP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BODNA"; +secondCol = "GQY1XT001BODNA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BO2G3"; +secondCol = "GQY1XT001BO2G3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNPUM"; +secondCol = "GQY1XT001BNPUM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNDMF"; +secondCol = "GQY1XT001BNDMF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMLA9"; +secondCol = "GQY1XT001BMLA9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BL467"; +secondCol = "GQY1XT001BL467"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BIJ28"; +secondCol = "GQY1XT001BIJ28"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BH0W9"; +secondCol = "GQY1XT001BH0W9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BG8LX"; +secondCol = "GQY1XT001BG8LX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFVJG"; +secondCol = "GQY1XT001BFVJG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF6FK"; +secondCol = "GQY1XT001BF6FK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF379"; +secondCol = "GQY1XT001BF379"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF0W9"; +secondCol = "GQY1XT001BF0W9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BE5OV"; +secondCol = "GQY1XT001BE5OV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDOH5"; +secondCol = "GQY1XT001BDOH5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDM6L"; +secondCol = "GQY1XT001BDM6L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDKWF"; +secondCol = "GQY1XT001BDKWF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDBAF"; +secondCol = "GQY1XT001BDBAF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCRMC"; +secondCol = "GQY1XT001BCRMC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC48B"; +secondCol = "GQY1XT001BC48B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBV5E"; +secondCol = "GQY1XT001BBV5E,GQY1XT001ANES4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBP29"; +secondCol = "GQY1XT001BBP29"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9AWM"; +secondCol = "GQY1XT001B9AWM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B95M3"; +secondCol = "GQY1XT001B95M3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8L7K"; +secondCol = "GQY1XT001B8L7K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B87PN"; +secondCol = "GQY1XT001B87PN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6LMA"; +secondCol = "GQY1XT001B6LMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5F3H"; +secondCol = "GQY1XT001B5F3H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B41CK"; +secondCol = "GQY1XT001B41CK,GQY1XT001ATYGK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2Q3R"; +secondCol = "GQY1XT001B2Q3R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B13GD"; +secondCol = "GQY1XT001B13GD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B11M6"; +secondCol = "GQY1XT001B11M6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0XU3"; +secondCol = "GQY1XT001B0XU3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0XQQ"; +secondCol = "GQY1XT001B0XQQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0NAD"; +secondCol = "GQY1XT001B0NAD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZSAC"; +secondCol = "GQY1XT001AZSAC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZRUS"; +secondCol = "GQY1XT001AZRUS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ6ZX"; +secondCol = "GQY1XT001AZ6ZX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYG0R"; +secondCol = "GQY1XT001AYG0R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW9SX"; +secondCol = "GQY1XT001AW9SX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVT16"; +secondCol = "GQY1XT001AVT16"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVK8L"; +secondCol = "GQY1XT001AVK8L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVIFA"; +secondCol = "GQY1XT001AVIFA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVF4E"; +secondCol = "GQY1XT001AVF4E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AUQ1O"; +secondCol = "GQY1XT001AUQ1O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATR8J"; +secondCol = "GQY1XT001ATR8J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATMMQ"; +secondCol = "GQY1XT001ATMMQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ARSOG"; +secondCol = "GQY1XT001ARSOG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQU2W"; +secondCol = "GQY1XT001AQU2W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APHH0"; +secondCol = "GQY1XT001APHH0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOMXQ"; +secondCol = "GQY1XT001AOMXQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ANUUY"; +secondCol = "GQY1XT001ANUUY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AMYAV"; +secondCol = "GQY1XT001AMYAV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKR8Q"; +secondCol = "GQY1XT001AKR8Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AKPS7"; +secondCol = "GQY1XT001AKPS7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AK6UN"; +secondCol = "GQY1XT001AK6UN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AJDFY"; +secondCol = "GQY1XT001AJDFY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIJTW"; +secondCol = "GQY1XT001AIJTW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGXYX"; +secondCol = "GQY1XT001AGXYX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGWWC"; +secondCol = "GQY1XT001AGWWC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGT98"; +secondCol = "GQY1XT001AGT98"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEGXE"; +secondCol = "GQY1XT001AEGXE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7WSM"; +secondCol = "GQY1XT001A7WSM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A6AS9"; +secondCol = "GQY1XT001A6AS9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5P2L"; +secondCol = "GQY1XT001A5P2L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5IPZ"; +secondCol = "GQY1XT001A5IPZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A448J"; +secondCol = "GQY1XT001A448J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3EAP"; +secondCol = "GQY1XT001A3EAP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A242T"; +secondCol = "GQY1XT001A242T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DO01W"; +secondCol = "GQY1XT001DO01W,GQY1XT001DJMMD,GQY1XT001BHLBL,GQY1XT001C9Z2M,GQY1XT001C4H7X,GQY1XT001ECTC3,GQY1XT001B89OA,GQY1XT001ELS6N,GQY1XT001B0MLX,GQY1XT001CXLL3,GQY1XT001A1OJL,GQY1XT001EZQP4,GQY1XT001DI414,GQY1XT001A1ICI,GQY1XT001BWLPY,GQY1XT001CCX2Y,GQY1XT001DBOD4,GQY1XT001BZHFD,GQY1XT001EP4B0,GQY1XT001A3GHW,GQY1XT001APB8L,GQY1XT001BNCTH,GQY1XT001B0FYL,GQY1XT001B7ZZI,GQY1XT001DPLFA,GQY1XT001CD0I0,GQY1XT001AWX0T,GQY1XT001EDEYK,GQY1XT001C9T86,GQY1XT001CF3NL,GQY1XT001AIMV8,GQY1XT001ETWOW,GQY1XT001DH3QU,GQY1XT001CI3IZ,GQY1XT001BYE4T,GQY1XT001D0FMC,GQY1XT001DXFNZ,GQY1XT001BBFT2,GQY1XT001CCSL8,GQY1XT001CK5ME,GQY1XT001DAN0I,GQY1XT001CT6ZO,GQY1XT001CIMK3,GQY1XT001BR0NA,GQY1XT001AW8EW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CHVTH"; +secondCol = "GQY1XT001CHVTH,GQY1XT001C9FLS,GQY1XT001C85RC,GQY1XT001DC8IC,GQY1XT001AJDTK,GQY1XT001DO1VV,GQY1XT001D0XNK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFYPL"; +secondCol = "GQY1XT001EFYPL,GQY1XT001CEOMS,GQY1XT001CP3B0,GQY1XT001E1BNX,GQY1XT001BH5YZ,GQY1XT001BAUTR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3TV9"; +secondCol = "GQY1XT001C3TV9,GQY1XT001AZ90H,GQY1XT001AYQT1,GQY1XT001D0VN1,GQY1XT001BZ45A,GQY1XT001AGSU5,GQY1XT001BAR47,GQY1XT001CB1GY,GQY1XT001BU2BB,GQY1XT001DPAQU,GQY1XT001E1BRP,GQY1XT001BBFJS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ELUU5"; +secondCol = "GQY1XT001ELUU5,GQY1XT001EU0UU,GQY1XT001AXO4G,GQY1XT001CEEQ2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQ2GQ"; +secondCol = "GQY1XT001DQ2GQ,GQY1XT001BP6DZ,GQY1XT001DSI6F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLHWX"; +secondCol = "GQY1XT001DLHWX,GQY1XT001BFBHF,GQY1XT001A2XHK,GQY1XT001BHFFY,GQY1XT001CJPZO,GQY1XT001D5FFT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPFM8"; +secondCol = "GQY1XT001CPFM8,GQY1XT001CWC6H,GQY1XT001C9KAA,GQY1XT001D1GWG,GQY1XT001E09XE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIQK9"; +secondCol = "GQY1XT001CIQK9,GQY1XT001BIL5D,GQY1XT001B0X0R,GQY1XT001CD7M2,GQY1XT001BK8CI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EVTKL"; +secondCol = "GQY1XT001EVTKL,GQY1XT001BAMF4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJC9R"; +secondCol = "GQY1XT001EJC9R,GQY1XT001EA0GZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHN8D"; +secondCol = "GQY1XT001EHN8D,GQY1XT001A602C,GQY1XT001D12A1,GQY1XT001EV9AC,GQY1XT001BLD2R,GQY1XT001D7SCK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0EBK"; +secondCol = "GQY1XT001E0EBK,GQY1XT001BWB7Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DP3XG"; +secondCol = "GQY1XT001DP3XG,GQY1XT001C8XLL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCXDJ"; +secondCol = "GQY1XT001DCXDJ,GQY1XT001BE8N0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D72B0"; +secondCol = "GQY1XT001D72B0,GQY1XT001A6JCD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZJ7Y"; +secondCol = "GQY1XT001CZJ7Y,GQY1XT001EO7S3,GQY1XT001AG4W1,GQY1XT001EHIT9,GQY1XT001ENJHJ,GQY1XT001DVTQB,GQY1XT001DDD16,GQY1XT001CC1QV,GQY1XT001A6AY7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CUFSX"; +secondCol = "GQY1XT001CUFSX,GQY1XT001CIEM0,GQY1XT001DY8IX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CU9JC"; +secondCol = "GQY1XT001CU9JC,GQY1XT001CRYBV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CP1A6"; +secondCol = "GQY1XT001CP1A6,GQY1XT001C4VYG,GQY1XT001BXQET,GQY1XT001EL1BM,GQY1XT001D11GS,GQY1XT001A1VOL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDUN9"; +secondCol = "GQY1XT001CDUN9,GQY1XT001EFEGM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CAC92"; +secondCol = "GQY1XT001CAC92,GQY1XT001AE2R2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9NQP"; +secondCol = "GQY1XT001C9NQP,GQY1XT001DAZT7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7B7J"; +secondCol = "GQY1XT001C7B7J,GQY1XT001ENUKR,GQY1XT001EYPUU,GQY1XT001CGE8J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZMQ1"; +secondCol = "GQY1XT001BZMQ1,GQY1XT001AW5MR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGTRD"; +secondCol = "GQY1XT001BGTRD,GQY1XT001EYTZZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEO0U"; +secondCol = "GQY1XT001BEO0U,GQY1XT001A3RRL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BC4R9"; +secondCol = "GQY1XT001BC4R9,GQY1XT001ETOBJ,GQY1XT001AVE59,GQY1XT001CKLLM,GQY1XT001EYINU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BBDAM"; +secondCol = "GQY1XT001BBDAM,GQY1XT001CAOAS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA7OW"; +secondCol = "GQY1XT001BA7OW,GQY1XT001EQNVT,GQY1XT001CMTAG,GQY1XT001CJAS6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA2Z8"; +secondCol = "GQY1XT001BA2Z8,GQY1XT001ASW2U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZVWN"; +secondCol = "GQY1XT001AZVWN,GQY1XT001B9SB3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AIWV5"; +secondCol = "GQY1XT001AIWV5,GQY1XT001DPMPY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AHH7D"; +secondCol = "GQY1XT001AHH7D,GQY1XT001EQETZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFC1R"; +secondCol = "GQY1XT001AFC1R,GQY1XT001D03BI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5T5N"; +secondCol = "GQY1XT001A5T5N,GQY1XT001E31UE,GQY1XT001E0TCP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EZD5U"; +secondCol = "GQY1XT001EZD5U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EX08P"; +secondCol = "GQY1XT001EX08P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWHO5"; +secondCol = "GQY1XT001EWHO5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWC2A"; +secondCol = "GQY1XT001EWC2A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EWBQ9"; +secondCol = "GQY1XT001EWBQ9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EW9SQ"; +secondCol = "GQY1XT001EW9SQ,GQY1XT001ECTXW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EURAU"; +secondCol = "GQY1XT001EURAU,GQY1XT001A4SN9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUR5I"; +secondCol = "GQY1XT001EUR5I,GQY1XT001CPFUN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUFVJ"; +secondCol = "GQY1XT001EUFVJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EUCL8"; +secondCol = "GQY1XT001EUCL8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU9WZ"; +secondCol = "GQY1XT001EU9WZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU8HV"; +secondCol = "GQY1XT001EU8HV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EU68M"; +secondCol = "GQY1XT001EU68M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETQB6"; +secondCol = "GQY1XT001ETQB6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ETGP5"; +secondCol = "GQY1XT001ETGP5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ESQ7W"; +secondCol = "GQY1XT001ESQ7W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERVXI"; +secondCol = "GQY1XT001ERVXI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERTUE"; +secondCol = "GQY1XT001ERTUE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ERR74"; +secondCol = "GQY1XT001ERR74"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EROE2"; +secondCol = "GQY1XT001EROE2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQMAL"; +secondCol = "GQY1XT001EQMAL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQIZD"; +secondCol = "GQY1XT001EQIZD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQI8M"; +secondCol = "GQY1XT001EQI8M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EQHNJ"; +secondCol = "GQY1XT001EQHNJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EPCGG"; +secondCol = "GQY1XT001EPCGG,GQY1XT001EKTS4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ENW69"; +secondCol = "GQY1XT001ENW69"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EMHOG"; +secondCol = "GQY1XT001EMHOG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKU1S"; +secondCol = "GQY1XT001EKU1S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EKFMP"; +secondCol = "GQY1XT001EKFMP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJF0G"; +secondCol = "GQY1XT001EJF0G,GQY1XT001CQ4EY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EJA9N"; +secondCol = "GQY1XT001EJA9N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EI5GF"; +secondCol = "GQY1XT001EI5GF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHOGV"; +secondCol = "GQY1XT001EHOGV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EHFJ7"; +secondCol = "GQY1XT001EHFJ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EH8EF"; +secondCol = "GQY1XT001EH8EF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EGP61"; +secondCol = "GQY1XT001EGP61"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EG37S"; +secondCol = "GQY1XT001EG37S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EFDKT"; +secondCol = "GQY1XT001EFDKT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EEA5J"; +secondCol = "GQY1XT001EEA5J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EE9OP"; +secondCol = "GQY1XT001EE9OP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDY98"; +secondCol = "GQY1XT001EDY98"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDJBD"; +secondCol = "GQY1XT001EDJBD,GQY1XT001CD1AT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDDHT"; +secondCol = "GQY1XT001EDDHT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EDBZ5"; +secondCol = "GQY1XT001EDBZ5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ED6SW"; +secondCol = "GQY1XT001ED6SW,GQY1XT001DIQNL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ECSR1"; +secondCol = "GQY1XT001ECSR1,GQY1XT001BVEDR,GQY1XT001AJAYK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EC3JY"; +secondCol = "GQY1XT001EC3JY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EBKJB"; +secondCol = "GQY1XT001EBKJB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAZQS"; +secondCol = "GQY1XT001EAZQS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EAK70"; +secondCol = "GQY1XT001EAK70,GQY1XT001DPIQN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001EA0NA"; +secondCol = "GQY1XT001EA0NA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E49EJ"; +secondCol = "GQY1XT001E49EJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E3SKF"; +secondCol = "GQY1XT001E3SKF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E31H9"; +secondCol = "GQY1XT001E31H9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E2MU1"; +secondCol = "GQY1XT001E2MU1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E1VKU"; +secondCol = "GQY1XT001E1VKU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0YWZ"; +secondCol = "GQY1XT001E0YWZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0YUP"; +secondCol = "GQY1XT001E0YUP,GQY1XT001BGBBF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0XSE"; +secondCol = "GQY1XT001E0XSE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E0JG7"; +secondCol = "GQY1XT001E0JG7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001E011N"; +secondCol = "GQY1XT001E011N"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZHYF"; +secondCol = "GQY1XT001DZHYF,GQY1XT001BBJSI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DZARG"; +secondCol = "GQY1XT001DZARG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYKHM"; +secondCol = "GQY1XT001DYKHM,GQY1XT001AQOJS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYG9X"; +secondCol = "GQY1XT001DYG9X,GQY1XT001C0T96"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DYB7Z"; +secondCol = "GQY1XT001DYB7Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DXVQD"; +secondCol = "GQY1XT001DXVQD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWWEU"; +secondCol = "GQY1XT001DWWEU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWW8X"; +secondCol = "GQY1XT001DWW8X,GQY1XT001BFQUC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DWANV"; +secondCol = "GQY1XT001DWANV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUVQ4"; +secondCol = "GQY1XT001DUVQ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUFB3"; +secondCol = "GQY1XT001DUFB3,GQY1XT001BFQC2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DUAZG"; +secondCol = "GQY1XT001DUAZG,GQY1XT001D3NAJ,GQY1XT001AINA2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTY0A"; +secondCol = "GQY1XT001DTY0A"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTPL4"; +secondCol = "GQY1XT001DTPL4,GQY1XT001CIURO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTOJ7"; +secondCol = "GQY1XT001DTOJ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTFRN"; +secondCol = "GQY1XT001DTFRN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DTCQF"; +secondCol = "GQY1XT001DTCQF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DT5CD"; +secondCol = "GQY1XT001DT5CD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DR68L"; +secondCol = "GQY1XT001DR68L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DQJV7"; +secondCol = "GQY1XT001DQJV7,GQY1XT001D12E0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DP0ZY"; +secondCol = "GQY1XT001DP0ZY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOYGT"; +secondCol = "GQY1XT001DOYGT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DOOAO"; +secondCol = "GQY1XT001DOOAO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DODSH"; +secondCol = "GQY1XT001DODSH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNYFM"; +secondCol = "GQY1XT001DNYFM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DNRUT"; +secondCol = "GQY1XT001DNRUT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DN33J"; +secondCol = "GQY1XT001DN33J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMKPA"; +secondCol = "GQY1XT001DMKPA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMDFW"; +secondCol = "GQY1XT001DMDFW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DMAYV"; +secondCol = "GQY1XT001DMAYV,GQY1XT001DDP4Z,GQY1XT001C78OT,GQY1XT001BNEM9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DM99T"; +secondCol = "GQY1XT001DM99T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLOR2"; +secondCol = "GQY1XT001DLOR2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DLAQ3"; +secondCol = "GQY1XT001DLAQ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DL3ZL"; +secondCol = "GQY1XT001DL3ZL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKYGN"; +secondCol = "GQY1XT001DKYGN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DKRZR"; +secondCol = "GQY1XT001DKRZR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJU9C"; +secondCol = "GQY1XT001DJU9C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJTM6"; +secondCol = "GQY1XT001DJTM6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DJ3G8"; +secondCol = "GQY1XT001DJ3G8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIUQ4"; +secondCol = "GQY1XT001DIUQ4,GQY1XT001BPDKZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DITX4"; +secondCol = "GQY1XT001DITX4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DIODY"; +secondCol = "GQY1XT001DIODY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DHO1K"; +secondCol = "GQY1XT001DHO1K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DFPH2"; +secondCol = "GQY1XT001DFPH2,GQY1XT001AY5OV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DF5SO"; +secondCol = "GQY1XT001DF5SO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DEPXH"; +secondCol = "GQY1XT001DEPXH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DD0KI"; +secondCol = "GQY1XT001DD0KI,GQY1XT001CTGZM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCSTX"; +secondCol = "GQY1XT001DCSTX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DCMTB"; +secondCol = "GQY1XT001DCMTB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBW7V"; +secondCol = "GQY1XT001DBW7V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBDYX"; +secondCol = "GQY1XT001DBDYX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DBBSK"; +secondCol = "GQY1XT001DBBSK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAYUX"; +secondCol = "GQY1XT001DAYUX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DATMY"; +secondCol = "GQY1XT001DATMY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DART7"; +secondCol = "GQY1XT001DART7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAEXA"; +secondCol = "GQY1XT001DAEXA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DAC6R"; +secondCol = "GQY1XT001DAC6R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001DA16W"; +secondCol = "GQY1XT001DA16W,GQY1XT001CQ7Q1,GQY1XT001C1TIS,GQY1XT001AIVD3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9WQ7"; +secondCol = "GQY1XT001D9WQ7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9E4Z"; +secondCol = "GQY1XT001D9E4Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D9DNF"; +secondCol = "GQY1XT001D9DNF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D96WW"; +secondCol = "GQY1XT001D96WW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8LM1"; +secondCol = "GQY1XT001D8LM1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D8H0J"; +secondCol = "GQY1XT001D8H0J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D89HM"; +secondCol = "GQY1XT001D89HM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D89AO"; +secondCol = "GQY1XT001D89AO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D83YP"; +secondCol = "GQY1XT001D83YP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D83TG"; +secondCol = "GQY1XT001D83TG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7V0C"; +secondCol = "GQY1XT001D7V0C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7S3W"; +secondCol = "GQY1XT001D7S3W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D7ICJ"; +secondCol = "GQY1XT001D7ICJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6ICR"; +secondCol = "GQY1XT001D6ICR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D6GBI"; +secondCol = "GQY1XT001D6GBI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5Z5M"; +secondCol = "GQY1XT001D5Z5M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5WBP"; +secondCol = "GQY1XT001D5WBP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D5DGI"; +secondCol = "GQY1XT001D5DGI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4U2W"; +secondCol = "GQY1XT001D4U2W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D4DZQ"; +secondCol = "GQY1XT001D4DZQ,GQY1XT001BKQ5T"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D3OAC"; +secondCol = "GQY1XT001D3OAC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1YOJ"; +secondCol = "GQY1XT001D1YOJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D1XZA"; +secondCol = "GQY1XT001D1XZA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001D000W"; +secondCol = "GQY1XT001D000W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZXNI"; +secondCol = "GQY1XT001CZXNI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CZW3Z"; +secondCol = "GQY1XT001CZW3Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYR32"; +secondCol = "GQY1XT001CYR32"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYCJN"; +secondCol = "GQY1XT001CYCJN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CYC4U"; +secondCol = "GQY1XT001CYC4U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CXS6D"; +secondCol = "GQY1XT001CXS6D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX8LX"; +secondCol = "GQY1XT001CX8LX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CX2Q2"; +secondCol = "GQY1XT001CX2Q2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CW98H"; +secondCol = "GQY1XT001CW98H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVV85"; +secondCol = "GQY1XT001CVV85"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVRJI"; +secondCol = "GQY1XT001CVRJI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVOL0"; +secondCol = "GQY1XT001CVOL0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CVFNC"; +secondCol = "GQY1XT001CVFNC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CV1LL"; +secondCol = "GQY1XT001CV1LL,GQY1XT001BQVD1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CV0DW"; +secondCol = "GQY1XT001CV0DW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTWYV"; +secondCol = "GQY1XT001CTWYV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTWB6"; +secondCol = "GQY1XT001CTWB6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTRQ3"; +secondCol = "GQY1XT001CTRQ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTKRX"; +secondCol = "GQY1XT001CTKRX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTK4X"; +secondCol = "GQY1XT001CTK4X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTK21"; +secondCol = "GQY1XT001CTK21"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CTF0L"; +secondCol = "GQY1XT001CTF0L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CT2JM"; +secondCol = "GQY1XT001CT2JM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CSHR4"; +secondCol = "GQY1XT001CSHR4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRUPS"; +secondCol = "GQY1XT001CRUPS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CRGVT"; +secondCol = "GQY1XT001CRGVT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQRH7"; +secondCol = "GQY1XT001CQRH7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQI4I"; +secondCol = "GQY1XT001CQI4I"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQFTX"; +secondCol = "GQY1XT001CQFTX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CQ5GA"; +secondCol = "GQY1XT001CQ5GA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CPMSS"; +secondCol = "GQY1XT001CPMSS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CP08F"; +secondCol = "GQY1XT001CP08F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CO8LA"; +secondCol = "GQY1XT001CO8LA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNQRQ"; +secondCol = "GQY1XT001CNQRQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CNIFR"; +secondCol = "GQY1XT001CNIFR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN1SH"; +secondCol = "GQY1XT001CN1SH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CN0JB"; +secondCol = "GQY1XT001CN0JB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CMX6S"; +secondCol = "GQY1XT001CMX6S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM9KO"; +secondCol = "GQY1XT001CM9KO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CM17B"; +secondCol = "GQY1XT001CM17B"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLYL8"; +secondCol = "GQY1XT001CLYL8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CLI56"; +secondCol = "GQY1XT001CLI56"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CKSVL"; +secondCol = "GQY1XT001CKSVL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ6J0"; +secondCol = "GQY1XT001CJ6J0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CJ1YF"; +secondCol = "GQY1XT001CJ1YF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIODT"; +secondCol = "GQY1XT001CIODT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CIA0D"; +secondCol = "GQY1XT001CIA0D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH6H7"; +secondCol = "GQY1XT001CH6H7,GQY1XT001AKKTX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH5CN"; +secondCol = "GQY1XT001CH5CN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CH58X"; +secondCol = "GQY1XT001CH58X,GQY1XT001ALVUA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGXD7"; +secondCol = "GQY1XT001CGXD7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGH66"; +secondCol = "GQY1XT001CGH66"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CGF2P"; +secondCol = "GQY1XT001CGF2P"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CG622"; +secondCol = "GQY1XT001CG622"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CG521"; +secondCol = "GQY1XT001CG521"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CG4OF"; +secondCol = "GQY1XT001CG4OF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CFS8O"; +secondCol = "GQY1XT001CFS8O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CEVMY"; +secondCol = "GQY1XT001CEVMY,GQY1XT001AUWC2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CE4Q0"; +secondCol = "GQY1XT001CE4Q0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CDJUW"; +secondCol = "GQY1XT001CDJUW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CBSLG"; +secondCol = "GQY1XT001CBSLG"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001CB5T5"; +secondCol = "GQY1XT001CB5T5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9U6C"; +secondCol = "GQY1XT001C9U6C"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C9BPY"; +secondCol = "GQY1XT001C9BPY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C98BJ"; +secondCol = "GQY1XT001C98BJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8VLV"; +secondCol = "GQY1XT001C8VLV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8RL3"; +secondCol = "GQY1XT001C8RL3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8QJ3"; +secondCol = "GQY1XT001C8QJ3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C8255"; +secondCol = "GQY1XT001C8255"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7ZOX"; +secondCol = "GQY1XT001C7ZOX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7SH9"; +secondCol = "GQY1XT001C7SH9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C7KNS"; +secondCol = "GQY1XT001C7KNS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C75NS"; +secondCol = "GQY1XT001C75NS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6WKE"; +secondCol = "GQY1XT001C6WKE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6SJY"; +secondCol = "GQY1XT001C6SJY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C6KPW"; +secondCol = "GQY1XT001C6KPW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C68RV"; +secondCol = "GQY1XT001C68RV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5JU1"; +secondCol = "GQY1XT001C5JU1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C5CE7"; +secondCol = "GQY1XT001C5CE7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C54I8"; +secondCol = "GQY1XT001C54I8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C51HZ"; +secondCol = "GQY1XT001C51HZ,GQY1XT001BLDSV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C49GL"; +secondCol = "GQY1XT001C49GL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C44EL"; +secondCol = "GQY1XT001C44EL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C3S0Z"; +secondCol = "GQY1XT001C3S0Z"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2Y41"; +secondCol = "GQY1XT001C2Y41"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2ODJ"; +secondCol = "GQY1XT001C2ODJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C2JT7"; +secondCol = "GQY1XT001C2JT7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C27UP"; +secondCol = "GQY1XT001C27UP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001C0NUT"; +secondCol = "GQY1XT001C0NUT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZV37"; +secondCol = "GQY1XT001BZV37"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZSJU"; +secondCol = "GQY1XT001BZSJU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZ3PM"; +secondCol = "GQY1XT001BZ3PM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BZ2RC"; +secondCol = "GQY1XT001BZ2RC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYZUD"; +secondCol = "GQY1XT001BYZUD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYT57"; +secondCol = "GQY1XT001BYT57"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BYKA3"; +secondCol = "GQY1XT001BYKA3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BXVU5"; +secondCol = "GQY1XT001BXVU5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BX7JZ"; +secondCol = "GQY1XT001BX7JZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BW40O"; +secondCol = "GQY1XT001BW40O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVWDT"; +secondCol = "GQY1XT001BVWDT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BVHR6"; +secondCol = "GQY1XT001BVHR6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BT9UW"; +secondCol = "GQY1XT001BT9UW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSY3L"; +secondCol = "GQY1XT001BSY3L"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BSMQ4"; +secondCol = "GQY1XT001BSMQ4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BS13U"; +secondCol = "GQY1XT001BS13U"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BRTL5"; +secondCol = "GQY1XT001BRTL5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BR72O"; +secondCol = "GQY1XT001BR72O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQZ4F"; +secondCol = "GQY1XT001BQZ4F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQWBU"; +secondCol = "GQY1XT001BQWBU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQLUR"; +secondCol = "GQY1XT001BQLUR"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQB6D"; +secondCol = "GQY1XT001BQB6D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ5G4"; +secondCol = "GQY1XT001BQ5G4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ1S6"; +secondCol = "GQY1XT001BQ1S6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BQ0GL"; +secondCol = "GQY1XT001BQ0GL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BPOSP"; +secondCol = "GQY1XT001BPOSP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOSE8"; +secondCol = "GQY1XT001BOSE8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BOCB0"; +secondCol = "GQY1XT001BOCB0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BNOH7"; +secondCol = "GQY1XT001BNOH7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BN99E"; +secondCol = "GQY1XT001BN99E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMUIK"; +secondCol = "GQY1XT001BMUIK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMIAQ"; +secondCol = "GQY1XT001BMIAQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BMFUU"; +secondCol = "GQY1XT001BMFUU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BM7K9"; +secondCol = "GQY1XT001BM7K9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BM7EA"; +secondCol = "GQY1XT001BM7EA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKZRW"; +secondCol = "GQY1XT001BKZRW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKFMA"; +secondCol = "GQY1XT001BKFMA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKFH5"; +secondCol = "GQY1XT001BKFH5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BKAWE"; +secondCol = "GQY1XT001BKAWE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJYSJ"; +secondCol = "GQY1XT001BJYSJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BJ8H5"; +secondCol = "GQY1XT001BJ8H5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BI3LM"; +secondCol = "GQY1XT001BI3LM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BHXDE"; +secondCol = "GQY1XT001BHXDE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BGQ7E"; +secondCol = "GQY1XT001BGQ7E"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BG450"; +secondCol = "GQY1XT001BG450"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BFZK3"; +secondCol = "GQY1XT001BFZK3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF30O"; +secondCol = "GQY1XT001BF30O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BF2QX"; +secondCol = "GQY1XT001BF2QX,GQY1XT001A83VX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEJZT"; +secondCol = "GQY1XT001BEJZT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BEBW7"; +secondCol = "GQY1XT001BEBW7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BDRSD"; +secondCol = "GQY1XT001BDRSD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BD828"; +secondCol = "GQY1XT001BD828"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCLXW"; +secondCol = "GQY1XT001BCLXW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCKVK"; +secondCol = "GQY1XT001BCKVK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCISS"; +secondCol = "GQY1XT001BCISS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BCH1F"; +secondCol = "GQY1XT001BCH1F"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BAXRL"; +secondCol = "GQY1XT001BAXRL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001BA51O"; +secondCol = "GQY1XT001BA51O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B9XTN"; +secondCol = "GQY1XT001B9XTN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B96VA"; +secondCol = "GQY1XT001B96VA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8U6Y"; +secondCol = "GQY1XT001B8U6Y"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8QB4"; +secondCol = "GQY1XT001B8QB4"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8DXP"; +secondCol = "GQY1XT001B8DXP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B8BT5"; +secondCol = "GQY1XT001B8BT5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B85U6"; +secondCol = "GQY1XT001B85U6"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B7EFI"; +secondCol = "GQY1XT001B7EFI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B74TO"; +secondCol = "GQY1XT001B74TO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B6FIY"; +secondCol = "GQY1XT001B6FIY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B64TM"; +secondCol = "GQY1XT001B64TM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B617J"; +secondCol = "GQY1XT001B617J"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5MNA"; +secondCol = "GQY1XT001B5MNA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B5G9X"; +secondCol = "GQY1XT001B5G9X,GQY1XT001AN4SV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B56EM"; +secondCol = "GQY1XT001B56EM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4UML"; +secondCol = "GQY1XT001B4UML"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B4MUT"; +secondCol = "GQY1XT001B4MUT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B40W5"; +secondCol = "GQY1XT001B40W5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3W8S"; +secondCol = "GQY1XT001B3W8S"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3N9K"; +secondCol = "GQY1XT001B3N9K,GQY1XT001A2SZ9"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B3EYH"; +secondCol = "GQY1XT001B3EYH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B384B"; +secondCol = "GQY1XT001B384B,GQY1XT001B16DA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2RDE"; +secondCol = "GQY1XT001B2RDE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2EC3"; +secondCol = "GQY1XT001B2EC3"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2DYC"; +secondCol = "GQY1XT001B2DYC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B2A7O"; +secondCol = "GQY1XT001B2A7O"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B23BY"; +secondCol = "GQY1XT001B23BY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B1FYN"; +secondCol = "GQY1XT001B1FYN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001B0IDP"; +secondCol = "GQY1XT001B0IDP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZT7W"; +secondCol = "GQY1XT001AZT7W"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZAZH"; +secondCol = "GQY1XT001AZAZH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AZ6QQ"; +secondCol = "GQY1XT001AZ6QQ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYUTA"; +secondCol = "GQY1XT001AYUTA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYNA7"; +secondCol = "GQY1XT001AYNA7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AYHAK"; +secondCol = "GQY1XT001AYHAK"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AY4WP"; +secondCol = "GQY1XT001AY4WP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AX8EE"; +secondCol = "GQY1XT001AX8EE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWZIH"; +secondCol = "GQY1XT001AWZIH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWRVU"; +secondCol = "GQY1XT001AWRVU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AWJ1M"; +secondCol = "GQY1XT001AWJ1M"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AW2T0"; +secondCol = "GQY1XT001AW2T0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVXBJ"; +secondCol = "GQY1XT001AVXBJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AVBP5"; +secondCol = "GQY1XT001AVBP5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ATUZ8"; +secondCol = "GQY1XT001ATUZ8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASWQS"; +secondCol = "GQY1XT001ASWQS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001ASFQE"; +secondCol = "GQY1XT001ASFQE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AROO8"; +secondCol = "GQY1XT001AROO8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AR18V"; +secondCol = "GQY1XT001AR18V"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQZ6X"; +secondCol = "GQY1XT001AQZ6X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQG1X"; +secondCol = "GQY1XT001AQG1X"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AQ3PI"; +secondCol = "GQY1XT001AQ3PI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APGKI"; +secondCol = "GQY1XT001APGKI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001APD07"; +secondCol = "GQY1XT001APD07"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AORNO"; +secondCol = "GQY1XT001AORNO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AOHJF"; +secondCol = "GQY1XT001AOHJF"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AO5IX"; +secondCol = "GQY1XT001AO5IX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AL3RI"; +secondCol = "GQY1XT001AL3RI"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AITUY"; +secondCol = "GQY1XT001AITUY"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AI920"; +secondCol = "GQY1XT001AI920"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGWON"; +secondCol = "GQY1XT001AGWON"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AGBP8"; +secondCol = "GQY1XT001AGBP8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AG5KZ"; +secondCol = "GQY1XT001AG5KZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFXW2"; +secondCol = "GQY1XT001AFXW2"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFWUA"; +secondCol = "GQY1XT001AFWUA"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFWRO"; +secondCol = "GQY1XT001AFWRO"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AFJA5"; +secondCol = "GQY1XT001AFJA5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AF6GW"; +secondCol = "GQY1XT001AF6GW"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AEZWU"; +secondCol = "GQY1XT001AEZWU"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001AE8EJ"; +secondCol = "GQY1XT001AE8EJ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9YE5"; +secondCol = "GQY1XT001A9YE5"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9V0Q"; +secondCol = "GQY1XT001A9V0Q"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9NV7"; +secondCol = "GQY1XT001A9NV7"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9KQV"; +secondCol = "GQY1XT001A9KQV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9HKL"; +secondCol = "GQY1XT001A9HKL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A9GYE"; +secondCol = "GQY1XT001A9GYE"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A95PC"; +secondCol = "GQY1XT001A95PC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A94I0"; +secondCol = "GQY1XT001A94I0"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A90S8"; +secondCol = "GQY1XT001A90S8"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8Y6H"; +secondCol = "GQY1XT001A8Y6H"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8OUN"; +secondCol = "GQY1XT001A8OUN"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8KPL"; +secondCol = "GQY1XT001A8KPL"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8DH1"; +secondCol = "GQY1XT001A8DH1"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A8158"; +secondCol = "GQY1XT001A8158"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7T0D"; +secondCol = "GQY1XT001A7T0D"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A7OHV"; +secondCol = "GQY1XT001A7OHV"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A5XPP"; +secondCol = "GQY1XT001A5XPP"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A59EZ"; +secondCol = "GQY1XT001A59EZ"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A520K"; +secondCol = "GQY1XT001A520K"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A4ZOC"; +secondCol = "GQY1XT001A4ZOC"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A3GEM"; +secondCol = "GQY1XT001A3GEM"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A37AB"; +secondCol = "GQY1XT001A37AB"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A2HWT"; +secondCol = "GQY1XT001A2HWT"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A16SX"; +secondCol = "GQY1XT001A16SX"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A13OH"; +secondCol = "GQY1XT001A13OH"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0VZD"; +secondCol = "GQY1XT001A0VZD"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0L0R"; +secondCol = "GQY1XT001A0L0R"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A0BQS"; +secondCol = "GQY1XT001A0BQS"; +nameMap[firstCol] = secondCol; +firstCol = "GQY1XT001A035O"; +secondCol = "GQY1XT001A035O"; +nameMap[firstCol] = secondCol; +} +/***********************************************************************/ + +void TestDataSet::fillGroup() { + +string name, group; +map groupMap; +name = "GQY1XT001BE860"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CQJQ4"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BLMPK"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ALMA7"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BULVX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001APNH4"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A21SN"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BTLIQ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AGD7J"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C0KKW"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CCQIC"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BIMSU"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D0KIQ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AUPK6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CSXYT"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A36FJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ASBXY"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CTKLJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AZV6U"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CFNFF"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AYFUK"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D6IYP"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C2DSW"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AJTPE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EC4DP"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B8BOX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AY0L9"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A34Y2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AD8S7"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BL413"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DYH1T"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CY5NE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B1JG5"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EY2KY"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EIYJ9"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C1IUU"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BX625"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AKI0B"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BA7E8"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B91F1"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DCHJE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DPK53"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EAZX0"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001E2Y85"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D5OXE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DXFCE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DXV17"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C0PZJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DFV2Z"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CG8YI"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C1CQ1"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EHKUD"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AX28W"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CS1F8"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C0X7N"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DIU85"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CDUPY"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BDVY7"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AD4H2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DSWTE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BY59Z"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C2A3H"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BE82W"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AONA4"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BR4MG"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BFMRW"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CTZ90"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EKHCD"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CJGAX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CJFIM"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CCBZE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DAJR6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A7VFP"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BZZ9M"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A4YC7"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D5G2F"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BEWJK"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DNNKT"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DYU5Q"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CO2S2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001APF4G"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BP6J1"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ANNDW"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EMF20"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C2F63"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DY9X6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C9UHY"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EOUT5"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001COIU5"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D9VG4"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AMBC2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B2NCN"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C0WZ1"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BRLZV"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CMQBM"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CD1FB"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EK6CT"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DPDOE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C4D0I"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CXBGH"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BVD44"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D2ZP9"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DBAT0"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CFFXS"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CP6RD"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DCY02"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EWO7D"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EO2VK"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DJ8XS"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EWY5K"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DCCI6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CZ2IL"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EB9FT"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BY9DP"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BSRU5"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EX1QM"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ETZ4S"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ED80G"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C4SKJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A36YS"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D38KG"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D0LYP"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D2LCX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BLLDK"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AXZ1Z"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BXCNG"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DKU46"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EPBTW"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ALSEJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AM8E1"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ALSMI"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ASKJQ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AZIWT"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C0EAB"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B76GU"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DKP7D"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C8QZE"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B8G1V"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AHUNB"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DD2R3"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EED9C"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ATTNL"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AYXA5"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B6K7W"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AV03T"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EPR6X"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BTTXF"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AJO5D"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CLU5P"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C52C3"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EVQTI"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BJ5GJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CY7V9"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BSVKC"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EYLB2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BEI4O"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C9DLT"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CM899"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AGRCR"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BGSK6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ATEQX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BUPRX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BNCIP"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001E1GDD"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B0308"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C09XB"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A9UL1"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DZ9FY"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CTPUJ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B9ZM3"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ARV4D"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DVVMY"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DIYUN"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DV8TG"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ARCJG"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B2I4C"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C8QD2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BPML8"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A243I"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CY12Q"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ASIF6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C3408"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B5458"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CABMK"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BX4C5"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D90CW"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DIE4J"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ESV4K"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001D6OTU"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C9QZ0"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CKNTO"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EK8MM"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001A62SC"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CIBDX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BAWTR"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CHSL9"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CKC2H"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CTTZ6"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CF3U2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001C2OG9"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CV5BM"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CMNBZ"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B8X1G"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EZPLM"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AI465"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001DQOM8"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001B7NBX"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CPL0X"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ATN1G"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001ESTU4"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001AVI9A"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001BN68M"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CH3J2"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001EG2LI"; +group = "F003D148"; +groupMap[name] = group; +name = "GQY1XT001CGJ4W"; +group = "F003D148"; 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group; +name = "GQY1XT001E3YSR"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DY6H0"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001E5YUK"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CK1D1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CVSWD"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EPEDX"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C87UN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D03X8"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D7P2H"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AXBNZ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CVKXW"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CQ6KU"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DUF4G"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BZLIT"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001B00RW"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EP2GW"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DWZGK"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D6BXG"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DL0MD"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DUSKF"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EEGQ6"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BFTSH"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D3CZZ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BWS1T"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EDRM5"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BA7LZ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DIBIR"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BY0B2"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AY0VM"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BDXT4"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001B1795"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BXQEM"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C5IR3"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DXGMK"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D99YB"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BIUZQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ARF5P"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ATU4S"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BGPJS"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EKUDW"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AOQKQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DZ45B"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BUNIH"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CQD4D"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CDPNR"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CH2FE"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DKL4G"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CPX8L"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DRC21"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001A6M4X"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CJDEI"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EQ2P3"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DON8D"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001APOHN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DUYNN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AUXC5"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001E1W7A"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EKN32"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C5IRM"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ESDP2"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D0UBD"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BODSF"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DTJ6T"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EQFNY"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001B586P"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001B9UX1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BE9CL"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EAGFC"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CVNFJ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AUGLI"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DZJ0U"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AZUBU"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D8BBD"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CRX79"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BG8BN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DYYTB"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001A73D1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BTDCN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DC35A"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DA9V1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001B14K0"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C1EQ3"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EMKJP"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ET8YR"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CNH55"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CALSA"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001A9NHQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DM8GB"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D57T1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C67VQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DE5XN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D7ZN9"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C0DDA"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DRE0B"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D2H10"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ERL66"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ERGPQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AX5JF"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EYI2G"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CW7VP"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BM3Y7"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001A2592"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BN3HH"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001E459X"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DNZ1V"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BK1AK"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001A6FPJ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AWAOQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DABXK"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DWG7P"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CIZO9"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EI65H"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BLHIM"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DNI0M"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CZAZ5"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C0J1F"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001B1I5L"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ENKLA"; + +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D1FVH"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EAGZ1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BK232"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C4AUV"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001C90GN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AOCMO"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CE5NQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AZBHH"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001A3MAE"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BGFIP"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CTB09"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DF1BN"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CB9ON"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001DD43P"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AZU52"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BRJET"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CRRGU"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001EZK4L"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BR4FQ"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BJ8ZR"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BIQ2M"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001CL13G"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BOT1Q"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001BW1FH"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001D9ATI"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001ALHD1"; +group = "F003D144"; +groupMap[name] = group; +name = "GQY1XT001AND7M"; +group = "F003D144"; +groupMap[name] = group; + + gMap = new GroupMap(); + for (map::iterator it = groupMap.begin(); it != groupMap.end(); it++) { + gMap->addSeq(it->first, it->second); + } + groupMap.clear(); +} +/***********************************************************************/ + +TestDataSet::fillLookup() { + vector groups; + m->sharedBinLabelsInFile.push_back("Otu0001"); + m->sharedBinLabelsInFile.push_back("Otu0002"); + m->sharedBinLabelsInFile.push_back("Otu0003"); + m->sharedBinLabelsInFile.push_back("Otu0004"); + m->sharedBinLabelsInFile.push_back("Otu0005"); + m->sharedBinLabelsInFile.push_back("Otu0006"); + m->sharedBinLabelsInFile.push_back("Otu0007"); + m->sharedBinLabelsInFile.push_back("Otu0008"); + m->sharedBinLabelsInFile.push_back("Otu0009"); + m->sharedBinLabelsInFile.push_back("Otu0010"); + m->sharedBinLabelsInFile.push_back("Otu0011"); + m->sharedBinLabelsInFile.push_back("Otu0012"); + m->sharedBinLabelsInFile.push_back("Otu0013"); + m->sharedBinLabelsInFile.push_back("Otu0014"); + m->sharedBinLabelsInFile.push_back("Otu0015"); + m->sharedBinLabelsInFile.push_back("Otu0016"); + m->sharedBinLabelsInFile.push_back("Otu0017"); + m->sharedBinLabelsInFile.push_back("Otu0018"); + m->sharedBinLabelsInFile.push_back("Otu0019"); + m->sharedBinLabelsInFile.push_back("Otu0020"); + m->sharedBinLabelsInFile.push_back("Otu0021"); + m->sharedBinLabelsInFile.push_back("Otu0022"); + m->sharedBinLabelsInFile.push_back("Otu0023"); + m->sharedBinLabelsInFile.push_back("Otu0024"); + m->sharedBinLabelsInFile.push_back("Otu0025"); + m->sharedBinLabelsInFile.push_back("Otu0026"); + m->sharedBinLabelsInFile.push_back("Otu0027"); + m->sharedBinLabelsInFile.push_back("Otu0028"); + m->sharedBinLabelsInFile.push_back("Otu0029"); + m->sharedBinLabelsInFile.push_back("Otu0030"); + m->sharedBinLabelsInFile.push_back("Otu0031"); + m->sharedBinLabelsInFile.push_back("Otu0032"); + m->sharedBinLabelsInFile.push_back("Otu0033"); + m->sharedBinLabelsInFile.push_back("Otu0034"); + m->sharedBinLabelsInFile.push_back("Otu0035"); + m->sharedBinLabelsInFile.push_back("Otu0036"); + m->sharedBinLabelsInFile.push_back("Otu0037"); + m->sharedBinLabelsInFile.push_back("Otu0038"); + m->sharedBinLabelsInFile.push_back("Otu0039"); + m->sharedBinLabelsInFile.push_back("Otu0040"); + m->sharedBinLabelsInFile.push_back("Otu0041"); + m->sharedBinLabelsInFile.push_back("Otu0042"); + m->sharedBinLabelsInFile.push_back("Otu0043"); + m->sharedBinLabelsInFile.push_back("Otu0044"); + m->sharedBinLabelsInFile.push_back("Otu0045"); + m->sharedBinLabelsInFile.push_back("Otu0046"); + m->sharedBinLabelsInFile.push_back("Otu0047"); + m->sharedBinLabelsInFile.push_back("Otu0048"); + m->sharedBinLabelsInFile.push_back("Otu0049"); + m->sharedBinLabelsInFile.push_back("Otu0050"); + m->sharedBinLabelsInFile.push_back("Otu0051"); + m->sharedBinLabelsInFile.push_back("Otu0052"); + m->sharedBinLabelsInFile.push_back("Otu0053"); + m->sharedBinLabelsInFile.push_back("Otu0054"); + m->sharedBinLabelsInFile.push_back("Otu0055"); + m->sharedBinLabelsInFile.push_back("Otu0056"); + m->sharedBinLabelsInFile.push_back("Otu0057"); + m->sharedBinLabelsInFile.push_back("Otu0058"); + m->sharedBinLabelsInFile.push_back("Otu0059"); + m->sharedBinLabelsInFile.push_back("Otu0060"); + m->sharedBinLabelsInFile.push_back("Otu0061"); + m->sharedBinLabelsInFile.push_back("Otu0062"); + m->sharedBinLabelsInFile.push_back("Otu0063"); + m->sharedBinLabelsInFile.push_back("Otu0064"); + m->sharedBinLabelsInFile.push_back("Otu0065"); + m->sharedBinLabelsInFile.push_back("Otu0066"); + m->sharedBinLabelsInFile.push_back("Otu0067"); + m->sharedBinLabelsInFile.push_back("Otu0068"); + m->sharedBinLabelsInFile.push_back("Otu0069"); + m->sharedBinLabelsInFile.push_back("Otu0070"); + m->sharedBinLabelsInFile.push_back("Otu0071"); + m->sharedBinLabelsInFile.push_back("Otu0072"); + m->sharedBinLabelsInFile.push_back("Otu0073"); + m->sharedBinLabelsInFile.push_back("Otu0074"); + m->sharedBinLabelsInFile.push_back("Otu0075"); + m->sharedBinLabelsInFile.push_back("Otu0076"); + m->sharedBinLabelsInFile.push_back("Otu0077"); + m->sharedBinLabelsInFile.push_back("Otu0078"); + m->sharedBinLabelsInFile.push_back("Otu0079"); + m->sharedBinLabelsInFile.push_back("Otu0080"); + m->sharedBinLabelsInFile.push_back("Otu0081"); + m->sharedBinLabelsInFile.push_back("Otu0082"); + m->sharedBinLabelsInFile.push_back("Otu0083"); + m->sharedBinLabelsInFile.push_back("Otu0084"); + m->sharedBinLabelsInFile.push_back("Otu0085"); + m->sharedBinLabelsInFile.push_back("Otu0086"); + m->sharedBinLabelsInFile.push_back("Otu0087"); + m->sharedBinLabelsInFile.push_back("Otu0088"); + m->sharedBinLabelsInFile.push_back("Otu0089"); + m->sharedBinLabelsInFile.push_back("Otu0090"); + m->sharedBinLabelsInFile.push_back("Otu0091"); + m->sharedBinLabelsInFile.push_back("Otu0092"); + m->sharedBinLabelsInFile.push_back("Otu0093"); + m->sharedBinLabelsInFile.push_back("Otu0094"); + m->sharedBinLabelsInFile.push_back("Otu0095"); + m->sharedBinLabelsInFile.push_back("Otu0096"); + m->sharedBinLabelsInFile.push_back("Otu0097"); + m->sharedBinLabelsInFile.push_back("Otu0098"); + m->sharedBinLabelsInFile.push_back("Otu0099"); + m->sharedBinLabelsInFile.push_back("Otu0100"); + m->sharedBinLabelsInFile.push_back("Otu0101"); + m->sharedBinLabelsInFile.push_back("Otu0102"); + m->sharedBinLabelsInFile.push_back("Otu0103"); + m->sharedBinLabelsInFile.push_back("Otu0104"); + m->sharedBinLabelsInFile.push_back("Otu0105"); + m->sharedBinLabelsInFile.push_back("Otu0106"); + m->sharedBinLabelsInFile.push_back("Otu0107"); + m->sharedBinLabelsInFile.push_back("Otu0108"); + m->sharedBinLabelsInFile.push_back("Otu0109"); + m->sharedBinLabelsInFile.push_back("Otu0110"); + m->sharedBinLabelsInFile.push_back("Otu0111"); + m->sharedBinLabelsInFile.push_back("Otu0112"); + m->sharedBinLabelsInFile.push_back("Otu0113"); + m->sharedBinLabelsInFile.push_back("Otu0114"); + m->sharedBinLabelsInFile.push_back("Otu0115"); + m->sharedBinLabelsInFile.push_back("Otu0116"); + m->sharedBinLabelsInFile.push_back("Otu0117"); + m->sharedBinLabelsInFile.push_back("Otu0118"); + m->sharedBinLabelsInFile.push_back("Otu0119"); + m->sharedBinLabelsInFile.push_back("Otu0120"); + m->sharedBinLabelsInFile.push_back("Otu0121"); + m->sharedBinLabelsInFile.push_back("Otu0122"); + m->sharedBinLabelsInFile.push_back("Otu0123"); + m->sharedBinLabelsInFile.push_back("Otu0124"); + m->sharedBinLabelsInFile.push_back("Otu0125"); + m->sharedBinLabelsInFile.push_back("Otu0126"); + m->sharedBinLabelsInFile.push_back("Otu0127"); + m->sharedBinLabelsInFile.push_back("Otu0128"); + m->sharedBinLabelsInFile.push_back("Otu0129"); + m->sharedBinLabelsInFile.push_back("Otu0130"); + m->sharedBinLabelsInFile.push_back("Otu0131"); + m->sharedBinLabelsInFile.push_back("Otu0132"); + m->sharedBinLabelsInFile.push_back("Otu0133"); + m->sharedBinLabelsInFile.push_back("Otu0134"); + m->sharedBinLabelsInFile.push_back("Otu0135"); + m->sharedBinLabelsInFile.push_back("Otu0136"); + m->sharedBinLabelsInFile.push_back("Otu0137"); + m->sharedBinLabelsInFile.push_back("Otu0138"); + m->sharedBinLabelsInFile.push_back("Otu0139"); + m->sharedBinLabelsInFile.push_back("Otu0140"); + m->sharedBinLabelsInFile.push_back("Otu0141"); + m->sharedBinLabelsInFile.push_back("Otu0142"); + m->sharedBinLabelsInFile.push_back("Otu0143"); + m->sharedBinLabelsInFile.push_back("Otu0144"); + 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m->sharedBinLabelsInFile.push_back("Otu0165"); + m->sharedBinLabelsInFile.push_back("Otu0166"); + m->sharedBinLabelsInFile.push_back("Otu0167"); + m->sharedBinLabelsInFile.push_back("Otu0168"); + m->sharedBinLabelsInFile.push_back("Otu0169"); + m->sharedBinLabelsInFile.push_back("Otu0170"); + m->sharedBinLabelsInFile.push_back("Otu0171"); + m->sharedBinLabelsInFile.push_back("Otu0172"); + m->sharedBinLabelsInFile.push_back("Otu0173"); + m->sharedBinLabelsInFile.push_back("Otu0174"); + m->sharedBinLabelsInFile.push_back("Otu0175"); + m->sharedBinLabelsInFile.push_back("Otu0176"); + m->sharedBinLabelsInFile.push_back("Otu0177"); + m->sharedBinLabelsInFile.push_back("Otu0178"); + m->sharedBinLabelsInFile.push_back("Otu0179"); + m->sharedBinLabelsInFile.push_back("Otu0180"); + m->sharedBinLabelsInFile.push_back("Otu0181"); + m->sharedBinLabelsInFile.push_back("Otu0182"); + m->sharedBinLabelsInFile.push_back("Otu0183"); + m->sharedBinLabelsInFile.push_back("Otu0184"); + 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m->sharedBinLabelsInFile.push_back("Otu0985"); + m->sharedBinLabelsInFile.push_back("Otu0986"); + m->sharedBinLabelsInFile.push_back("Otu0987"); + m->sharedBinLabelsInFile.push_back("Otu0988"); + m->sharedBinLabelsInFile.push_back("Otu0989"); + m->sharedBinLabelsInFile.push_back("Otu0990"); + m->sharedBinLabelsInFile.push_back("Otu0991"); + m->sharedBinLabelsInFile.push_back("Otu0992"); + m->sharedBinLabelsInFile.push_back("Otu0993"); + m->sharedBinLabelsInFile.push_back("Otu0994"); + m->sharedBinLabelsInFile.push_back("Otu0995"); + m->sharedBinLabelsInFile.push_back("Otu0996"); + m->sharedBinLabelsInFile.push_back("Otu0997"); + m->sharedBinLabelsInFile.push_back("Otu0998"); + m->sharedBinLabelsInFile.push_back("Otu0999"); + m->sharedBinLabelsInFile.push_back("Otu1000"); + m->sharedBinLabelsInFile.push_back("Otu1001"); + m->sharedBinLabelsInFile.push_back("Otu1002"); + m->sharedBinLabelsInFile.push_back("Otu1003"); + m->sharedBinLabelsInFile.push_back("Otu1004"); + m->sharedBinLabelsInFile.push_back("Otu1005"); + m->sharedBinLabelsInFile.push_back("Otu1006"); + m->sharedBinLabelsInFile.push_back("Otu1007"); + m->sharedBinLabelsInFile.push_back("Otu1008"); + m->sharedBinLabelsInFile.push_back("Otu1009"); + m->sharedBinLabelsInFile.push_back("Otu1010"); + m->sharedBinLabelsInFile.push_back("Otu1011"); + m->sharedBinLabelsInFile.push_back("Otu1012"); + m->sharedBinLabelsInFile.push_back("Otu1013"); + m->sharedBinLabelsInFile.push_back("Otu1014"); + m->sharedBinLabelsInFile.push_back("Otu1015"); + m->sharedBinLabelsInFile.push_back("Otu1016"); + m->sharedBinLabelsInFile.push_back("Otu1017"); + m->sharedBinLabelsInFile.push_back("Otu1018"); + m->sharedBinLabelsInFile.push_back("Otu1019"); + m->sharedBinLabelsInFile.push_back("Otu1020"); + m->sharedBinLabelsInFile.push_back("Otu1021"); + m->sharedBinLabelsInFile.push_back("Otu1022"); + m->sharedBinLabelsInFile.push_back("Otu1023"); + m->sharedBinLabelsInFile.push_back("Otu1024"); + m->sharedBinLabelsInFile.push_back("Otu1025"); + m->sharedBinLabelsInFile.push_back("Otu1026"); + m->sharedBinLabelsInFile.push_back("Otu1027"); + m->sharedBinLabelsInFile.push_back("Otu1028"); + m->sharedBinLabelsInFile.push_back("Otu1029"); + m->sharedBinLabelsInFile.push_back("Otu1030"); + m->sharedBinLabelsInFile.push_back("Otu1031"); + m->sharedBinLabelsInFile.push_back("Otu1032"); + m->sharedBinLabelsInFile.push_back("Otu1033"); + m->sharedBinLabelsInFile.push_back("Otu1034"); + m->sharedBinLabelsInFile.push_back("Otu1035"); + m->sharedBinLabelsInFile.push_back("Otu1036"); + m->sharedBinLabelsInFile.push_back("Otu1037"); + m->sharedBinLabelsInFile.push_back("Otu1038"); + m->sharedBinLabelsInFile.push_back("Otu1039"); + m->sharedBinLabelsInFile.push_back("Otu1040"); + m->sharedBinLabelsInFile.push_back("Otu1041"); + m->sharedBinLabelsInFile.push_back("Otu1042"); + m->sharedBinLabelsInFile.push_back("Otu1043"); + m->sharedBinLabelsInFile.push_back("Otu1044"); + m->sharedBinLabelsInFile.push_back("Otu1045"); + m->sharedBinLabelsInFile.push_back("Otu1046"); + m->sharedBinLabelsInFile.push_back("Otu1047"); + m->sharedBinLabelsInFile.push_back("Otu1048"); + m->sharedBinLabelsInFile.push_back("Otu1049"); + m->sharedBinLabelsInFile.push_back("Otu1050"); + m->sharedBinLabelsInFile.push_back("Otu1051"); + m->sharedBinLabelsInFile.push_back("Otu1052"); + m->sharedBinLabelsInFile.push_back("Otu1053"); + m->sharedBinLabelsInFile.push_back("Otu1054"); + m->sharedBinLabelsInFile.push_back("Otu1055"); + m->sharedBinLabelsInFile.push_back("Otu1056"); + m->sharedBinLabelsInFile.push_back("Otu1057"); + m->sharedBinLabelsInFile.push_back("Otu1058"); + m->sharedBinLabelsInFile.push_back("Otu1059"); + m->sharedBinLabelsInFile.push_back("Otu1060"); + m->sharedBinLabelsInFile.push_back("Otu1061"); + m->sharedBinLabelsInFile.push_back("Otu1062"); + m->sharedBinLabelsInFile.push_back("Otu1063"); + m->sharedBinLabelsInFile.push_back("Otu1064"); + m->sharedBinLabelsInFile.push_back("Otu1065"); + m->sharedBinLabelsInFile.push_back("Otu1066"); + m->sharedBinLabelsInFile.push_back("Otu1067"); + m->sharedBinLabelsInFile.push_back("Otu1068"); + m->sharedBinLabelsInFile.push_back("Otu1069"); + m->sharedBinLabelsInFile.push_back("Otu1070"); + m->sharedBinLabelsInFile.push_back("Otu1071"); + m->sharedBinLabelsInFile.push_back("Otu1072"); + m->sharedBinLabelsInFile.push_back("Otu1073"); + m->sharedBinLabelsInFile.push_back("Otu1074"); + m->sharedBinLabelsInFile.push_back("Otu1075"); + m->sharedBinLabelsInFile.push_back("Otu1076"); + string label = "0.03"; + groups.push_back("F003D000"); + string groupN = groups[groups.size()-1]; + m->currentSharedBinLabels = m->sharedBinLabelsInFile; + SharedRAbundVector* temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[0]->setLabel(label) +; lookup[0]->setGroup(groupN); + lookup[0]->push_back(412, groupN); + lookup[0]->push_back(400, groupN); + lookup[0]->push_back(259, groupN); + lookup[0]->push_back(417, groupN); + lookup[0]->push_back(167, groupN); + lookup[0]->push_back(186, groupN); + lookup[0]->push_back(203, groupN); + lookup[0]->push_back(257, groupN); + lookup[0]->push_back(169, groupN); + lookup[0]->push_back(13, groupN); + lookup[0]->push_back(24, groupN); + lookup[0]->push_back(156, groupN); + lookup[0]->push_back(37, groupN); + lookup[0]->push_back(67, groupN); + lookup[0]->push_back(58, groupN); + lookup[0]->push_back(386, groupN); + lookup[0]->push_back(32, groupN); + lookup[0]->push_back(208, groupN); + lookup[0]->push_back(24, groupN); + lookup[0]->push_back(62, groupN); + lookup[0]->push_back(7, groupN); + lookup[0]->push_back(22, groupN); + lookup[0]->push_back(47, groupN); + lookup[0]->push_back(45, groupN); + lookup[0]->push_back(102, groupN); + lookup[0]->push_back(49, groupN); + lookup[0]->push_back(52, groupN); + lookup[0]->push_back(15, groupN); + lookup[0]->push_back(49, groupN); + lookup[0]->push_back(30, groupN); + lookup[0]->push_back(49, groupN); + lookup[0]->push_back(28, groupN); + lookup[0]->push_back(36, groupN); + lookup[0]->push_back(35, groupN); + lookup[0]->push_back(14, groupN); + lookup[0]->push_back(16, groupN); + lookup[0]->push_back(14, groupN); + lookup[0]->push_back(6, groupN); + lookup[0]->push_back(8, groupN); + lookup[0]->push_back(38, groupN); + lookup[0]->push_back(63, groupN); + lookup[0]->push_back(10, groupN); + lookup[0]->push_back(8, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(31, groupN); + lookup[0]->push_back(13, groupN); + lookup[0]->push_back(27, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(12, groupN); + lookup[0]->push_back(88, groupN); + lookup[0]->push_back(13, groupN); + lookup[0]->push_back(12, groupN); + lookup[0]->push_back(7, groupN); + lookup[0]->push_back(57, groupN); + lookup[0]->push_back(11, groupN); + lookup[0]->push_back(27, groupN); + lookup[0]->push_back(11, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(11, groupN); + lookup[0]->push_back(9, groupN); + lookup[0]->push_back(12, groupN); + lookup[0]->push_back(25, groupN); + lookup[0]->push_back(56, groupN); + lookup[0]->push_back(13, groupN); + lookup[0]->push_back(26, groupN); + lookup[0]->push_back(24, groupN); + lookup[0]->push_back(13, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(18, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(6, groupN); + lookup[0]->push_back(20, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(35, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(15, groupN); + lookup[0]->push_back(7, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(8, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(16, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(12, groupN); + lookup[0]->push_back(17, groupN); + lookup[0]->push_back(9, groupN); + lookup[0]->push_back(9, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(10, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(12, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(10, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(6, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(8, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(7, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(4, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(5, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(3, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(2, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(1, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + lookup[0]->push_back(0, groupN); + groups.push_back("F003D002"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[1]->setLabel(label) +; lookup[1]->setGroup(groupN); + lookup[1]->push_back(998, groupN); + lookup[1]->push_back(182, groupN); + lookup[1]->push_back(487, groupN); + lookup[1]->push_back(344, groupN); + lookup[1]->push_back(88, groupN); + lookup[1]->push_back(275, groupN); + lookup[1]->push_back(396, groupN); + lookup[1]->push_back(16, groupN); + lookup[1]->push_back(68, groupN); + lookup[1]->push_back(17, groupN); + lookup[1]->push_back(88, groupN); + lookup[1]->push_back(47, groupN); + lookup[1]->push_back(64, groupN); + lookup[1]->push_back(34, groupN); + lookup[1]->push_back(8, groupN); + lookup[1]->push_back(68, groupN); + lookup[1]->push_back(39, groupN); + lookup[1]->push_back(43, groupN); + lookup[1]->push_back(8, groupN); + lookup[1]->push_back(45, groupN); + lookup[1]->push_back(12, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(32, groupN); + lookup[1]->push_back(98, groupN); + lookup[1]->push_back(181, groupN); + lookup[1]->push_back(43, groupN); + lookup[1]->push_back(10, groupN); + lookup[1]->push_back(104, groupN); + lookup[1]->push_back(13, groupN); + lookup[1]->push_back(15, groupN); + lookup[1]->push_back(27, groupN); + lookup[1]->push_back(29, groupN); + lookup[1]->push_back(53, groupN); + lookup[1]->push_back(4, groupN); + lookup[1]->push_back(35, groupN); + lookup[1]->push_back(7, groupN); + lookup[1]->push_back(15, groupN); + lookup[1]->push_back(9, groupN); + lookup[1]->push_back(16, groupN); + lookup[1]->push_back(25, groupN); + lookup[1]->push_back(14, groupN); + lookup[1]->push_back(4, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(25, groupN); + lookup[1]->push_back(23, groupN); + lookup[1]->push_back(6, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(22, groupN); + lookup[1]->push_back(7, groupN); + lookup[1]->push_back(15, groupN); + lookup[1]->push_back(11, groupN); + lookup[1]->push_back(29, groupN); + lookup[1]->push_back(13, groupN); + lookup[1]->push_back(20, groupN); + lookup[1]->push_back(18, groupN); + lookup[1]->push_back(14, groupN); + lookup[1]->push_back(7, groupN); + lookup[1]->push_back(22, groupN); + lookup[1]->push_back(12, groupN); + lookup[1]->push_back(15, groupN); + lookup[1]->push_back(16, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(7, groupN); + lookup[1]->push_back(26, groupN); + lookup[1]->push_back(5, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(15, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(5, groupN); + lookup[1]->push_back(7, groupN); + lookup[1]->push_back(6, groupN); + lookup[1]->push_back(6, groupN); + lookup[1]->push_back(8, groupN); + lookup[1]->push_back(6, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(16, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(5, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(14, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(8, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(10, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(6, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(5, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(4, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(6, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(5, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(5, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(4, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(4, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(3, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(2, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(1, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + lookup[1]->push_back(0, groupN); + groups.push_back("F003D004"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[2]->setLabel(label) +; lookup[2]->setGroup(groupN); + lookup[2]->push_back(935, groupN); + lookup[2]->push_back(411, groupN); + lookup[2]->push_back(560, groupN); + lookup[2]->push_back(448, groupN); + lookup[2]->push_back(240, groupN); + lookup[2]->push_back(381, groupN); + lookup[2]->push_back(223, groupN); + lookup[2]->push_back(9, groupN); + lookup[2]->push_back(67, groupN); + lookup[2]->push_back(43, groupN); + lookup[2]->push_back(175, groupN); + lookup[2]->push_back(40, groupN); + lookup[2]->push_back(26, groupN); + lookup[2]->push_back(71, groupN); + lookup[2]->push_back(21, groupN); + lookup[2]->push_back(42, groupN); + lookup[2]->push_back(79, groupN); + lookup[2]->push_back(15, groupN); + lookup[2]->push_back(37, groupN); + lookup[2]->push_back(52, groupN); + lookup[2]->push_back(44, groupN); + lookup[2]->push_back(40, groupN); + lookup[2]->push_back(11, groupN); + lookup[2]->push_back(12, groupN); + lookup[2]->push_back(20, groupN); + lookup[2]->push_back(22, groupN); + lookup[2]->push_back(12, groupN); + lookup[2]->push_back(34, groupN); + lookup[2]->push_back(15, groupN); + lookup[2]->push_back(6, groupN); + lookup[2]->push_back(17, groupN); + lookup[2]->push_back(14, groupN); + lookup[2]->push_back(6, groupN); + lookup[2]->push_back(13, groupN); + lookup[2]->push_back(19, groupN); + lookup[2]->push_back(11, groupN); + lookup[2]->push_back(14, groupN); + lookup[2]->push_back(24, groupN); + lookup[2]->push_back(29, groupN); + lookup[2]->push_back(5, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(19, groupN); + lookup[2]->push_back(6, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(9, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(8, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(12, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(7, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(5, groupN); + lookup[2]->push_back(9, groupN); + lookup[2]->push_back(6, groupN); + lookup[2]->push_back(9, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(5, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(8, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(4, groupN); + lookup[2]->push_back(4, groupN); + lookup[2]->push_back(11, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(8, groupN); + lookup[2]->push_back(5, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(4, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(5, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(4, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(6, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(4, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(3, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(2, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(1, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + lookup[2]->push_back(0, groupN); + groups.push_back("F003D006"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[3]->setLabel(label) +; lookup[3]->setGroup(groupN); + lookup[3]->push_back(955, groupN); + lookup[3]->push_back(440, groupN); + lookup[3]->push_back(670, groupN); + lookup[3]->push_back(670, groupN); + lookup[3]->push_back(355, groupN); + lookup[3]->push_back(371, groupN); + lookup[3]->push_back(156, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(76, groupN); + lookup[3]->push_back(24, groupN); + lookup[3]->push_back(144, groupN); + lookup[3]->push_back(81, groupN); + lookup[3]->push_back(350, groupN); + lookup[3]->push_back(95, groupN); + lookup[3]->push_back(18, groupN); + lookup[3]->push_back(48, groupN); + lookup[3]->push_back(91, groupN); + lookup[3]->push_back(39, groupN); + lookup[3]->push_back(74, groupN); + lookup[3]->push_back(18, groupN); + lookup[3]->push_back(38, groupN); + lookup[3]->push_back(32, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(28, groupN); + lookup[3]->push_back(31, groupN); + lookup[3]->push_back(22, groupN); + lookup[3]->push_back(44, groupN); + lookup[3]->push_back(38, groupN); + lookup[3]->push_back(8, groupN); + lookup[3]->push_back(35, groupN); + lookup[3]->push_back(27, groupN); + lookup[3]->push_back(22, groupN); + lookup[3]->push_back(30, groupN); + lookup[3]->push_back(31, groupN); + lookup[3]->push_back(36, groupN); + lookup[3]->push_back(18, groupN); + lookup[3]->push_back(21, groupN); + lookup[3]->push_back(22, groupN); + lookup[3]->push_back(30, groupN); + lookup[3]->push_back(19, groupN); + lookup[3]->push_back(8, groupN); + lookup[3]->push_back(22, groupN); + lookup[3]->push_back(6, groupN); + lookup[3]->push_back(7, groupN); + lookup[3]->push_back(28, groupN); + lookup[3]->push_back(9, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(12, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(6, groupN); + lookup[3]->push_back(16, groupN); + lookup[3]->push_back(6, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(21, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(23, groupN); + lookup[3]->push_back(16, groupN); + lookup[3]->push_back(20, groupN); + lookup[3]->push_back(11, groupN); + lookup[3]->push_back(13, groupN); + lookup[3]->push_back(12, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(8, groupN); + lookup[3]->push_back(13, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(9, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(4, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(8, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(6, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(7, groupN); + lookup[3]->push_back(7, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(10, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(7, groupN); + lookup[3]->push_back(8, groupN); + lookup[3]->push_back(4, groupN); + lookup[3]->push_back(4, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(9, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(6, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(6, groupN); + lookup[3]->push_back(5, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(4, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(3, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(2, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(1, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + lookup[3]->push_back(0, groupN); + groups.push_back("F003D008"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[4]->setLabel(label) +; lookup[4]->setGroup(groupN); + lookup[4]->push_back(346, groupN); + lookup[4]->push_back(307, groupN); + lookup[4]->push_back(412, groupN); + lookup[4]->push_back(527, groupN); + lookup[4]->push_back(779, groupN); + lookup[4]->push_back(336, groupN); + lookup[4]->push_back(313, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(26, groupN); + lookup[4]->push_back(20, groupN); + lookup[4]->push_back(107, groupN); + lookup[4]->push_back(60, groupN); + lookup[4]->push_back(201, groupN); + lookup[4]->push_back(74, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(41, groupN); + lookup[4]->push_back(53, groupN); + lookup[4]->push_back(85, groupN); + lookup[4]->push_back(44, groupN); + lookup[4]->push_back(22, groupN); + lookup[4]->push_back(16, groupN); + lookup[4]->push_back(116, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(31, groupN); + lookup[4]->push_back(35, groupN); + lookup[4]->push_back(14, groupN); + lookup[4]->push_back(32, groupN); + lookup[4]->push_back(30, groupN); + lookup[4]->push_back(13, groupN); + lookup[4]->push_back(17, groupN); + lookup[4]->push_back(38, groupN); + lookup[4]->push_back(19, groupN); + lookup[4]->push_back(27, groupN); + lookup[4]->push_back(40, groupN); + lookup[4]->push_back(15, groupN); + lookup[4]->push_back(26, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(21, groupN); + lookup[4]->push_back(14, groupN); + lookup[4]->push_back(42, groupN); + lookup[4]->push_back(12, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(16, groupN); + lookup[4]->push_back(41, groupN); + lookup[4]->push_back(17, groupN); + lookup[4]->push_back(57, groupN); + lookup[4]->push_back(12, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(12, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(21, groupN); + lookup[4]->push_back(10, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(14, groupN); + lookup[4]->push_back(7, groupN); + lookup[4]->push_back(15, groupN); + lookup[4]->push_back(40, groupN); + lookup[4]->push_back(17, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(16, groupN); + lookup[4]->push_back(14, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(10, groupN); + lookup[4]->push_back(7, groupN); + lookup[4]->push_back(10, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(15, groupN); + lookup[4]->push_back(10, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(11, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(9, groupN); + lookup[4]->push_back(6, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(8, groupN); + lookup[4]->push_back(8, groupN); + lookup[4]->push_back(8, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(21, groupN); + lookup[4]->push_back(9, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(8, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(6, groupN); + lookup[4]->push_back(6, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(6, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(5, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(4, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(3, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(2, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(1, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + lookup[4]->push_back(0, groupN); + groups.push_back("F003D142"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[5]->setLabel(label) +; lookup[5]->setGroup(groupN); + lookup[5]->push_back(707, groupN); + lookup[5]->push_back(813, groupN); + lookup[5]->push_back(783, groupN); + lookup[5]->push_back(437, groupN); + lookup[5]->push_back(455, groupN); + lookup[5]->push_back(234, groupN); + lookup[5]->push_back(130, groupN); + lookup[5]->push_back(327, groupN); + lookup[5]->push_back(274, groupN); + lookup[5]->push_back(66, groupN); + lookup[5]->push_back(136, groupN); + lookup[5]->push_back(124, groupN); + lookup[5]->push_back(201, groupN); + lookup[5]->push_back(114, groupN); + lookup[5]->push_back(116, groupN); + lookup[5]->push_back(15, groupN); + lookup[5]->push_back(64, groupN); + lookup[5]->push_back(9, groupN); + lookup[5]->push_back(62, groupN); + lookup[5]->push_back(37, groupN); + lookup[5]->push_back(57, groupN); + lookup[5]->push_back(12, groupN); + lookup[5]->push_back(45, groupN); + lookup[5]->push_back(24, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(23, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(9, groupN); + lookup[5]->push_back(7, groupN); + lookup[5]->push_back(10, groupN); + lookup[5]->push_back(11, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(22, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(25, groupN); + lookup[5]->push_back(24, groupN); + lookup[5]->push_back(17, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(12, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(12, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(15, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(10, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(8, groupN); + lookup[5]->push_back(6, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(7, groupN); + lookup[5]->push_back(23, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(9, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(6, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(6, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(5, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(4, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(3, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(2, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + 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lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + 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lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(1, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + lookup[5]->push_back(0, groupN); + groups.push_back("F003D144"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[6]->setLabel(label) +; lookup[6]->setGroup(groupN); + lookup[6]->push_back(481, groupN); + lookup[6]->push_back(599, groupN); + lookup[6]->push_back(392, groupN); + lookup[6]->push_back(379, groupN); + lookup[6]->push_back(173, groupN); + lookup[6]->push_back(214, groupN); + lookup[6]->push_back(33, groupN); + lookup[6]->push_back(314, groupN); + lookup[6]->push_back(231, groupN); + lookup[6]->push_back(417, groupN); + lookup[6]->push_back(130, groupN); + lookup[6]->push_back(196, groupN); + lookup[6]->push_back(34, groupN); + lookup[6]->push_back(95, groupN); + lookup[6]->push_back(125, groupN); + lookup[6]->push_back(14, groupN); + lookup[6]->push_back(41, groupN); + lookup[6]->push_back(9, groupN); + lookup[6]->push_back(53, groupN); + lookup[6]->push_back(41, groupN); + lookup[6]->push_back(61, groupN); + lookup[6]->push_back(43, groupN); + lookup[6]->push_back(89, groupN); + lookup[6]->push_back(6, groupN); + lookup[6]->push_back(6, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(5, groupN); + lookup[6]->push_back(25, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(9, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(9, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(17, groupN); + lookup[6]->push_back(20, groupN); + lookup[6]->push_back(6, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(10, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(18, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(7, groupN); + lookup[6]->push_back(7, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(5, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(7, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(7, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(6, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(5, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(4, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(3, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(2, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + lookup[6]->push_back(0, groupN); + lookup[6]->push_back(1, groupN); + groups.push_back("F003D146"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[7]->setLabel(label) +; lookup[7]->setGroup(groupN); + lookup[7]->push_back(448, groupN); + lookup[7]->push_back(594, groupN); + lookup[7]->push_back(443, groupN); + lookup[7]->push_back(374, groupN); + lookup[7]->push_back(449, groupN); + lookup[7]->push_back(177, groupN); + lookup[7]->push_back(193, groupN); + lookup[7]->push_back(340, groupN); + lookup[7]->push_back(146, groupN); + lookup[7]->push_back(568, groupN); + lookup[7]->push_back(114, groupN); + lookup[7]->push_back(183, groupN); + lookup[7]->push_back(11, groupN); + lookup[7]->push_back(107, groupN); + lookup[7]->push_back(94, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(46, groupN); + lookup[7]->push_back(26, groupN); + lookup[7]->push_back(50, groupN); + lookup[7]->push_back(41, groupN); + lookup[7]->push_back(51, groupN); + lookup[7]->push_back(29, groupN); + lookup[7]->push_back(36, groupN); + lookup[7]->push_back(34, groupN); + lookup[7]->push_back(14, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(42, groupN); + lookup[7]->push_back(15, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(23, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(38, groupN); + lookup[7]->push_back(15, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(21, groupN); + lookup[7]->push_back(38, groupN); + lookup[7]->push_back(35, groupN); + lookup[7]->push_back(20, groupN); + lookup[7]->push_back(15, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(13, groupN); + lookup[7]->push_back(8, groupN); + lookup[7]->push_back(25, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(18, groupN); + lookup[7]->push_back(7, groupN); + lookup[7]->push_back(14, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(11, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(8, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(11, groupN); + lookup[7]->push_back(12, groupN); + lookup[7]->push_back(9, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(8, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(6, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(16, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(9, groupN); + lookup[7]->push_back(7, groupN); + lookup[7]->push_back(8, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(12, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(7, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(10, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(4, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(5, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(3, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(2, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(1, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + lookup[7]->push_back(0, groupN); + groups.push_back("F003D148"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[8]->setLabel(label) +; lookup[8]->setGroup(groupN); + lookup[8]->push_back(382, groupN); + lookup[8]->push_back(516, groupN); + lookup[8]->push_back(456, groupN); + lookup[8]->push_back(264, groupN); + lookup[8]->push_back(238, groupN); + lookup[8]->push_back(142, groupN); + lookup[8]->push_back(297, groupN); + lookup[8]->push_back(301, groupN); + lookup[8]->push_back(258, groupN); + lookup[8]->push_back(234, groupN); + lookup[8]->push_back(145, groupN); + lookup[8]->push_back(143, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(50, groupN); + lookup[8]->push_back(109, groupN); + lookup[8]->push_back(11, groupN); + lookup[8]->push_back(24, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(29, groupN); + lookup[8]->push_back(30, groupN); + lookup[8]->push_back(33, groupN); + lookup[8]->push_back(49, groupN); + lookup[8]->push_back(101, groupN); + lookup[8]->push_back(34, groupN); + lookup[8]->push_back(14, groupN); + lookup[8]->push_back(13, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(8, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(25, groupN); + lookup[8]->push_back(17, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(6, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(14, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(13, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(6, groupN); + lookup[8]->push_back(9, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(35, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(5, groupN); + lookup[8]->push_back(41, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(5, groupN); + lookup[8]->push_back(12, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(8, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(8, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(5, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(10, groupN); + lookup[8]->push_back(10, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(11, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(6, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(7, groupN); + lookup[8]->push_back(9, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(5, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(5, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(4, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(3, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(2, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(0, groupN); + lookup[8]->push_back(1, groupN); + lookup[8]->push_back(0, groupN); + groups.push_back("F003D150"); + groupN = groups[groups.size()-1]; + temp = new SharedRAbundVector(); + lookup.push_back(temp); + lookup[9]->setLabel(label) +; lookup[9]->setGroup(groupN); + lookup[9]->push_back(465, groupN); + lookup[9]->push_back(674, groupN); + lookup[9]->push_back(409, groupN); + lookup[9]->push_back(535, groupN); + lookup[9]->push_back(410, groupN); + lookup[9]->push_back(357, groupN); + lookup[9]->push_back(292, groupN); + lookup[9]->push_back(207, groupN); + lookup[9]->push_back(170, groupN); + lookup[9]->push_back(81, groupN); + lookup[9]->push_back(264, groupN); + lookup[9]->push_back(254, groupN); + lookup[9]->push_back(54, groupN); + lookup[9]->push_back(97, groupN); + lookup[9]->push_back(151, groupN); + lookup[9]->push_back(14, groupN); + lookup[9]->push_back(52, groupN); + lookup[9]->push_back(15, groupN); + lookup[9]->push_back(72, groupN); + lookup[9]->push_back(68, groupN); + lookup[9]->push_back(82, groupN); + lookup[9]->push_back(29, groupN); + lookup[9]->push_back(28, groupN); + lookup[9]->push_back(89, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(7, groupN); + lookup[9]->push_back(5, groupN); + lookup[9]->push_back(26, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(35, groupN); + lookup[9]->push_back(9, groupN); + lookup[9]->push_back(12, groupN); + lookup[9]->push_back(17, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(23, groupN); + lookup[9]->push_back(20, groupN); + lookup[9]->push_back(21, groupN); + lookup[9]->push_back(8, groupN); + lookup[9]->push_back(12, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(5, groupN); + lookup[9]->push_back(8, groupN); + lookup[9]->push_back(28, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(17, groupN); + lookup[9]->push_back(30, groupN); + lookup[9]->push_back(7, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(11, groupN); + lookup[9]->push_back(12, groupN); + lookup[9]->push_back(17, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(8, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(9, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(25, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(22, groupN); + lookup[9]->push_back(19, groupN); + lookup[9]->push_back(21, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(14, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(6, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(11, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(9, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(18, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(6, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(5, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(10, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(6, groupN); + lookup[9]->push_back(6, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(5, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(5, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(6, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(7, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(4, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(3, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(2, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(1, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + lookup[9]->push_back(0, groupN); + m->setAllGroups(groups); + m->saveNextLabel = ""; +} +/***********************************************************************/ + diff --git a/TestMothur/dataset.h b/TestMothur/dataset.h new file mode 100644 index 00000000..4af2c834 --- /dev/null +++ b/TestMothur/dataset.h @@ -0,0 +1,42 @@ +// +// dataset.h +// Mothur +// +// Created by Sarah Westcott on 3/24/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__dataset__ +#define __Mothur__dataset__ + +#include +#include "sequence.hpp" +#include "counttable.h" +#include "groupmap.h" + +class TestDataSet { + +public: + + TestDataSet(); + vector getSeqs() { fillSeqs(); return seqs; } + map getNameMap() { fillNames(); return nameMap; } + GroupMap* getGroupMap() { fillGroup(); return gMap; } + CountTable* getCountTable() { createCountable(); return ct; } + +private: + MothurOut* m; + vector seqs; + map nameMap; + CountTable ct; + GroupMap* gMap; + vector lookup; + void fillNames(); + void fillSeqs(); + void fillGroup(); + void createCountTable(); + +}; + + +#endif /* defined(__Mothur__dataset__) */ diff --git a/TestMothur/main.cpp b/TestMothur/main.cpp index 1c86ead6..af40c05c 100644 --- a/TestMothur/main.cpp +++ b/TestMothur/main.cpp @@ -30,4 +30,4 @@ To compile TestMothur you need to uncomment #define CATCH_CONFIG_MAIN // This tells Catch to provide a main() - only do this in one cpp file #include "catch.hpp" - +#define UNIT_TEST diff --git a/TestMothur/testvsearchfileparser.cpp b/TestMothur/testvsearchfileparser.cpp new file mode 100644 index 00000000..80a3226f --- /dev/null +++ b/TestMothur/testvsearchfileparser.cpp @@ -0,0 +1,9 @@ +// +// testvsearchfileparser.cpp +// Mothur +// +// Created by Sarah Westcott on 3/24/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#include "testvsearchfileparser.h" diff --git a/TestMothur/testvsearchfileparser.h b/TestMothur/testvsearchfileparser.h new file mode 100644 index 00000000..825841cd --- /dev/null +++ b/TestMothur/testvsearchfileparser.h @@ -0,0 +1,25 @@ +// +// testvsearchfileparser.h +// Mothur +// +// Created by Sarah Westcott on 3/24/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testvsearchfileparser__ +#define __Mothur__testvsearchfileparser__ + +#include "vsearchfileparser.h" + +class TestVsearchFileParser : public VsearchFileParser { + +public: + + using VsearchFileParser::getNamesFile; + using VsearchFileParser::createVsearchFasta; + using VsearchFileParser::removeAbundances; + +}; + + +#endif /* defined(__Mothur__testvsearchfileparser__) */ diff --git a/source/datastructures/groupmap.cpp b/source/datastructures/groupmap.cpp index 9b8aa3f8..4ee8c21d 100644 --- a/source/datastructures/groupmap.cpp +++ b/source/datastructures/groupmap.cpp @@ -21,6 +21,30 @@ /************************************************************/ GroupMap::~GroupMap(){} /************************************************************/ +int GroupMap::addSeq(string name, string group) { + try { + int error = 0; + + setNamesOfGroups(group); + + if (m->debug) { m->mothurOut("[DEBUG]: name = '" + name + "', group = '" + group + "'\n"); } + m->checkName(name); + it = groupmap.find(name); + + if (it != groupmap.end()) { error = 1; m->mothurOut("Your groupfile contains more than 1 sequence named " + name + ", sequence names must be unique. Please correct."); m->mothurOutEndLine(); } + else { + groupmap[name] = group; //store data in map + seqsPerGroup[group]++; //increment number of seqs in that group + } + + return error; + } + catch(exception& e) { + m->errorOut(e, "GroupMap", "addSeq"); + exit(1); + } +} +/************************************************************/ int GroupMap::readMap() { try { string seqName, seqGroup; diff --git a/source/datastructures/groupmap.h b/source/datastructures/groupmap.h index 5397e02e..06d9c187 100644 --- a/source/datastructures/groupmap.h +++ b/source/datastructures/groupmap.h @@ -43,7 +43,7 @@ class GroupMap { int renameSeq(string, string); int print(ofstream&); int print(ofstream&, vector); //print certain groups - + int addSeq(string name, string group); map groupIndex; //groupname, vectorIndex in namesOfGroups. - used by collectdisplays and libshuff commands. diff --git a/source/vsearchfileparser.h b/source/vsearchfileparser.h index 551ee454..56fe3edc 100644 --- a/source/vsearchfileparser.h +++ b/source/vsearchfileparser.h @@ -16,6 +16,10 @@ class VsearchFileParser { +#ifdef UNIT_TEST + friend class TestVsearchFileParser; +#endif + public: VsearchFileParser(string f); //fastafile VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") From 6a2c7bbf437e097e3d0624b886d730a4bd46d4ba Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 29 Mar 2016 16:08:11 -0400 Subject: [PATCH 130/135] WIP Testing Updates --- Mothur.xcodeproj/project.pbxproj | 54 ++++++++++++++--------- TestMothur/dataset.cpp | 30 +++++++++++-- TestMothur/dataset.h | 9 +++- TestMothur/main.cpp | 2 +- TestMothur/testcommands/testrenameseqscommand.cpp | 4 +- TestMothur/testcommands/testrenameseqscommand.h | 2 + TestMothur/testcontainers/testfastqread.cpp | 9 ++++ TestMothur/testcontainers/testfastqread.h | 23 ++++++++++ TestMothur/testcontainers/testsequence.h | 1 - TestMothur/testvsearchfileparser.cpp | 47 ++++++++++++++++++++ TestMothur/testvsearchfileparser.h | 6 +-- source/commandfactory.cpp | 2 +- source/datastructures/fastqread.h | 5 +++ source/datastructures/referencedb.cpp | 2 +- source/mothurout.cpp | 2 +- source/vsearchfileparser.cpp | 16 +++++++ source/vsearchfileparser.h | 4 +- 17 files changed, 181 insertions(+), 37 deletions(-) create mode 100644 TestMothur/testcontainers/testfastqread.cpp create mode 100644 TestMothur/testcontainers/testfastqread.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 36d674cd..83d2a480 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -10,6 +10,7 @@ 2114A7681C654D7400D3D8D9 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; }; 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; }; + 480E8DB11CAB12ED00A0D137 /* testfastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */; }; 481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; }; 481FB51C1AC0A63E0076CFF3 /* main.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB51B1AC0A63E0076CFF3 /* main.cpp */; }; 481FB5261AC0ADA00076CFF3 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DB12D37EC400DA6239 /* sequence.cpp */; }; @@ -792,6 +793,8 @@ 219C1DE11552C508004209F9 /* newcommandtemplate.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = newcommandtemplate.h; path = source/commands/newcommandtemplate.h; sourceTree = ""; }; 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = getcoremicrobiomecommand.cpp; path = source/commands/getcoremicrobiomecommand.cpp; sourceTree = ""; }; 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = getcoremicrobiomecommand.h; path = source/commands/getcoremicrobiomecommand.h; sourceTree = ""; }; + 480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = testfastqread.cpp; path = testcontainers/testfastqread.cpp; sourceTree = ""; }; + 480E8DB01CAB12ED00A0D137 /* testfastqread.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; name = testfastqread.h; path = testcontainers/testfastqread.h; sourceTree = ""; }; 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; name = pcrseqscommand.cpp; path = source/commands/pcrseqscommand.cpp; sourceTree = ""; }; 481623E31B58267D004C60B7 /* INSTALL.md */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = net.daringfireball.markdown; path = INSTALL.md; sourceTree = ""; }; 481FB5191AC0A63E0076CFF3 /* TestMothur */ = {isa = PBXFileReference; explicitFileType = "compiled.mach-o.executable"; includeInIndex = 0; path = TestMothur; sourceTree = BUILT_PRODUCTS_DIR; }; @@ -1750,6 +1753,8 @@ 481FB5221AC0AA010076CFF3 /* testcontainers */ = { isa = PBXGroup; children = ( + 480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */, + 480E8DB01CAB12ED00A0D137 /* testfastqread.h */, 48C728641B66A77800D40830 /* testsequence.cpp */, 48C728761B6AB4EE00D40830 /* testsequence.h */, ); @@ -2806,6 +2811,7 @@ 481FB5561AC1B6520076CFF3 /* shannon.cpp in Sources */, 481FB6591AC1B8100076CFF3 /* linearalgebra.cpp in Sources */, 481FB5411AC1B6070076CFF3 /* coverage.cpp in Sources */, + 480E8DB11CAB12ED00A0D137 /* testfastqread.cpp in Sources */, 481FB6231AC1B7BA0076CFF3 /* pam.cpp in Sources */, 481FB5BA1AC1B74F0076CFF3 /* getdistscommand.cpp in Sources */, 481FB6191AC1B7AC0076CFF3 /* systemcommand.cpp in Sources */, @@ -3416,7 +3422,7 @@ "-lboost_iostreams", "-lz", ); - SDKROOT = macosx10.9; + SDKROOT = macosx; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = /usr/local/include/; }; @@ -3465,7 +3471,7 @@ "-lboost_iostreams", "-lz", ); - SDKROOT = macosx10.9; + SDKROOT = macosx; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = /usr/local/include/; }; @@ -3475,21 +3481,21 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = YES; - CLANG_CXX_LANGUAGE_STANDARD = "gnu++0x"; - CLANG_CXX_LIBRARY = "libc++"; + CLANG_CXX_LANGUAGE_STANDARD = "compiler-default"; + CLANG_CXX_LIBRARY = "compiler-default"; CLANG_ENABLE_MODULES = YES; CLANG_ENABLE_OBJC_ARC = YES; - CLANG_WARN_BOOL_CONVERSION = YES; - CLANG_WARN_CONSTANT_CONVERSION = YES; + CLANG_WARN_BOOL_CONVERSION = NO; + CLANG_WARN_CONSTANT_CONVERSION = NO; CLANG_WARN_DIRECT_OBJC_ISA_USAGE = YES_ERROR; - CLANG_WARN_EMPTY_BODY = YES; - CLANG_WARN_ENUM_CONVERSION = YES; - CLANG_WARN_INT_CONVERSION = YES; + CLANG_WARN_EMPTY_BODY = NO; + CLANG_WARN_ENUM_CONVERSION = NO; + CLANG_WARN_INT_CONVERSION = NO; CLANG_WARN_OBJC_ROOT_CLASS = YES_ERROR; CLANG_WARN__DUPLICATE_METHOD_MATCH = YES; COPY_PHASE_STRIP = NO; ENABLE_STRICT_OBJC_MSGSEND = YES; - GCC_C_LANGUAGE_STANDARD = gnu99; + GCC_C_LANGUAGE_STANDARD = "compiler-default"; GCC_DYNAMIC_NO_PIC = NO; GCC_OPTIMIZATION_LEVEL = 0; GCC_PREPROCESSOR_DEFINITIONS = ( @@ -3497,13 +3503,15 @@ "$(inherited)", ); GCC_SYMBOLS_PRIVATE_EXTERN = NO; - GCC_WARN_64_TO_32_BIT_CONVERSION = YES; + GCC_WARN_64_TO_32_BIT_CONVERSION = NO; GCC_WARN_ABOUT_RETURN_TYPE = YES_ERROR; GCC_WARN_UNDECLARED_SELECTOR = YES; - GCC_WARN_UNINITIALIZED_AUTOS = YES_AGGRESSIVE; + GCC_WARN_UNINITIALIZED_AUTOS = NO; MACOSX_DEPLOYMENT_TARGET = 10.9; MTL_ENABLE_DEBUG_INFO = YES; + ONLY_ACTIVE_ARCH = YES; PRODUCT_NAME = "$(TARGET_NAME)"; + SDKROOT = macosx; }; name = Debug; }; @@ -3511,30 +3519,32 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = YES; - CLANG_CXX_LANGUAGE_STANDARD = "gnu++0x"; - CLANG_CXX_LIBRARY = "libc++"; + CLANG_CXX_LANGUAGE_STANDARD = "compiler-default"; + CLANG_CXX_LIBRARY = "compiler-default"; CLANG_ENABLE_MODULES = YES; CLANG_ENABLE_OBJC_ARC = YES; - CLANG_WARN_BOOL_CONVERSION = YES; - CLANG_WARN_CONSTANT_CONVERSION = YES; + CLANG_WARN_BOOL_CONVERSION = NO; + CLANG_WARN_CONSTANT_CONVERSION = NO; CLANG_WARN_DIRECT_OBJC_ISA_USAGE = YES_ERROR; - CLANG_WARN_EMPTY_BODY = YES; - CLANG_WARN_ENUM_CONVERSION = YES; - CLANG_WARN_INT_CONVERSION = YES; + CLANG_WARN_EMPTY_BODY = NO; + CLANG_WARN_ENUM_CONVERSION = NO; + CLANG_WARN_INT_CONVERSION = NO; CLANG_WARN_OBJC_ROOT_CLASS = YES_ERROR; CLANG_WARN__DUPLICATE_METHOD_MATCH = YES; COPY_PHASE_STRIP = NO; DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; ENABLE_NS_ASSERTIONS = NO; ENABLE_STRICT_OBJC_MSGSEND = YES; - GCC_C_LANGUAGE_STANDARD = gnu99; - GCC_WARN_64_TO_32_BIT_CONVERSION = YES; + GCC_C_LANGUAGE_STANDARD = "compiler-default"; + GCC_WARN_64_TO_32_BIT_CONVERSION = NO; GCC_WARN_ABOUT_RETURN_TYPE = YES_ERROR; GCC_WARN_UNDECLARED_SELECTOR = YES; - GCC_WARN_UNINITIALIZED_AUTOS = YES_AGGRESSIVE; + GCC_WARN_UNINITIALIZED_AUTOS = NO; MACOSX_DEPLOYMENT_TARGET = 10.9; MTL_ENABLE_DEBUG_INFO = NO; + ONLY_ACTIVE_ARCH = YES; PRODUCT_NAME = "$(TARGET_NAME)"; + SDKROOT = macosx; }; name = Release; }; diff --git a/TestMothur/dataset.cpp b/TestMothur/dataset.cpp index 90848e2d..db9f1f83 100644 --- a/TestMothur/dataset.cpp +++ b/TestMothur/dataset.cpp @@ -26,7 +26,7 @@ void TestDataSet::createCountTable() { map groupCounts; int total = 0; vector Groups = gMap->getNamesOfGroups(); - ct.setNamesOfGroups(Groups); + ct->setNamesOfGroups(Groups); for (int i = 0; i < Groups.size(); i++) { groupCounts[Groups[i]] = 0; } //get counts for each of the users groups @@ -45,7 +45,7 @@ void TestDataSet::createCountTable() { if (total != 0) { vector abunds; for (map::iterator it = groupCounts.begin(); it != groupCounts.end(); it++) { abunds.push_back(it->second); } - ct.push_back(firstCol, abunds); + ct->push_back(firstCol, abunds); } } delete gMap; @@ -53,6 +53,30 @@ void TestDataSet::createCountTable() { } /***********************************************************************/ +vector TestDataSet::getSubsetFNGFiles(int numSeqs) { + fillSeqs(); + vector subsetSeqs; + for (int i = 0; i < numSeqs; i++) { subsetSeqs.push_back(seqs[i]); } + seqs.clear(); + + fillNames(); + fillGroup(); + ofstream out, out2, out3; + m->openOutputFile("tempSeqs.txt", out); m->openOutputFile("tempNames.txt", out2); m->openOutputFile("tempGroup.txt", out3); + for (int i = 0; i < subsetSeqs.size(); i++) { + subsetSeqs[i].printSequence(out); + out2 << subsetSeqs[i].getName() << '\t' << nameMap[subsetSeqs[i].getName()] << '\n'; + out3 << subsetSeqs[i].getName() << '\t' << gMap->getGroup(subsetSeqs[i].getName()) << '\n'; + } + nameMap.clear(); + delete gMap; + + vector filenames; filenames.push_back("tempSeqs.txt"); filenames.push_back("tempNames.txt"); filenames.push_back("tempGroup.txt"); + + return filenames; +} +/***********************************************************************/ + void TestDataSet::fillSeqs() { //fill seqs with final.fasta @@ -180906,7 +180930,7 @@ groupMap[name] = group; } /***********************************************************************/ -TestDataSet::fillLookup() { +void TestDataSet::fillLookup() { vector groups; m->sharedBinLabelsInFile.push_back("Otu0001"); m->sharedBinLabelsInFile.push_back("Otu0002"); diff --git a/TestMothur/dataset.h b/TestMothur/dataset.h index 4af2c834..d3f9cc94 100644 --- a/TestMothur/dataset.h +++ b/TestMothur/dataset.h @@ -13,6 +13,7 @@ #include "sequence.hpp" #include "counttable.h" #include "groupmap.h" +#include "sharedrabundvector.h" class TestDataSet { @@ -22,19 +23,23 @@ class TestDataSet { vector getSeqs() { fillSeqs(); return seqs; } map getNameMap() { fillNames(); return nameMap; } GroupMap* getGroupMap() { fillGroup(); return gMap; } - CountTable* getCountTable() { createCountable(); return ct; } + CountTable* getCountTable() { createCountTable(); return ct; } + vector getLookup() { fillLookup(); return lookup; } + + vector getSubsetFNGFiles(int); //number of uniques, Fasta, name, group returned private: MothurOut* m; vector seqs; map nameMap; - CountTable ct; + CountTable* ct; GroupMap* gMap; vector lookup; void fillNames(); void fillSeqs(); void fillGroup(); void createCountTable(); + void fillLookup(); }; diff --git a/TestMothur/main.cpp b/TestMothur/main.cpp index af40c05c..1c86ead6 100644 --- a/TestMothur/main.cpp +++ b/TestMothur/main.cpp @@ -30,4 +30,4 @@ To compile TestMothur you need to uncomment #define CATCH_CONFIG_MAIN // This tells Catch to provide a main() - only do this in one cpp file #include "catch.hpp" -#define UNIT_TEST + diff --git a/TestMothur/testcommands/testrenameseqscommand.cpp b/TestMothur/testcommands/testrenameseqscommand.cpp index e843b775..e7f0f3ab 100644 --- a/TestMothur/testcommands/testrenameseqscommand.cpp +++ b/TestMothur/testcommands/testrenameseqscommand.cpp @@ -6,10 +6,12 @@ // Copyright (c) 2015 Schloss Lab. All rights reserved. // +#include "catch.hpp" #include "testrenameseqscommand.h" TEST_CASE("Testing Rename.seqs Command") { TestRenameSeqsCommand tRename; + MothurOut* m = MothurOut::getInstance(); //setup environment tRename.fastaFile = m->testDirectory + "final.fasta"; @@ -29,7 +31,7 @@ TEST_CASE("Testing Rename.seqs Command") { tRename.groupfile = m->testDirectory + "final.groups"; CAPTURE(tRename.execute()); // Displays this variable on a FAIL - CHECK(m->getNumErrors == 0); + CHECK(m->getNumErrors() == 0); } //add more tests... diff --git a/TestMothur/testcommands/testrenameseqscommand.h b/TestMothur/testcommands/testrenameseqscommand.h index 84fb8e63..6154b37e 100644 --- a/TestMothur/testcommands/testrenameseqscommand.h +++ b/TestMothur/testcommands/testrenameseqscommand.h @@ -15,6 +15,8 @@ class TestRenameSeqsCommand : public RenameSeqsCommand { public: + MothurOut* m; + //private functions using RenameSeqsCommand::readQual; using RenameSeqsCommand::readContigs; diff --git a/TestMothur/testcontainers/testfastqread.cpp b/TestMothur/testcontainers/testfastqread.cpp new file mode 100644 index 00000000..d3cda5f4 --- /dev/null +++ b/TestMothur/testcontainers/testfastqread.cpp @@ -0,0 +1,9 @@ +// +// testfastqread.cpp +// Mothur +// +// Created by Sarah Westcott on 3/29/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#include "testfastqread.h" diff --git a/TestMothur/testcontainers/testfastqread.h b/TestMothur/testcontainers/testfastqread.h new file mode 100644 index 00000000..b7b0deb6 --- /dev/null +++ b/TestMothur/testcontainers/testfastqread.h @@ -0,0 +1,23 @@ +// +// testfastqread.h +// Mothur +// +// Created by Sarah Westcott on 3/29/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__testfastqread__ +#define __Mothur__testfastqread__ + +#include "fastqread.h" + +class TestFastqRead : public FastqRead { + +public: + + using FastqRead::convertQual; + +}; + + +#endif /* defined(__Mothur__testfastqread__) */ diff --git a/TestMothur/testcontainers/testsequence.h b/TestMothur/testcontainers/testsequence.h index 5ffba630..1e6b40c1 100644 --- a/TestMothur/testcontainers/testsequence.h +++ b/TestMothur/testcontainers/testsequence.h @@ -14,7 +14,6 @@ class TestSequence : public Sequence { public: - //using Sequence::Sequence; using Sequence::initialize; }; diff --git a/TestMothur/testvsearchfileparser.cpp b/TestMothur/testvsearchfileparser.cpp index 80a3226f..9618c3dd 100644 --- a/TestMothur/testvsearchfileparser.cpp +++ b/TestMothur/testvsearchfileparser.cpp @@ -6,4 +6,51 @@ // Copyright (c) 2016 Schloss Lab. All rights reserved. // +#include "catch.hpp" #include "testvsearchfileparser.h" + +/**************************************************************************************************/ + +TEST_CASE("Testing VsearchParser Class") { + MothurOut* m = MothurOut::getInstance(); + TestDataSet data; + vector filenames = data.getSubsetFNGFiles(10); + CountTable* ct = data.getCountTable(); + + VsearchFileParser vsearchParser(filenames[0], filenames[1], "name"); + TestVsearchFileParser testVParser; + + SECTION("CreateVsearchFasta") { + INFO("Using First 10 sequences of final.fasta and final.names") // Only appears on a FAIL + + CAPTURE(vsearchParser.getVsearchFile()); // Displays this variable on a FAIL + + CHECK(vsearchParser.getVsearchFile() == "tempSeqs.sorted.fasta.temp"); + + ifstream in; + m->openInputFile(vsearchParser.getVsearchFile(), in); + + while (!in.eof()) { + Sequence seq(in); m->gobble(in); + + vector pieces; + string name = seq.getName(); + m->splitAtChar(name, pieces, '='); + string abundString = pieces[1].substr(0, pieces[1].length()-1); + int abund = 0; + m->mothurConvert(abundString, abund); + int totalSeqs = ct->getNumSeqs(seq.getName()); + + CHECK(abund == totalSeqs); + } + } + + SECTION("Remove Abundances") { + INFO("Using GQY1XT001C44N8/size=3677/") // Only appears on a FAIL + string seqName = "GQY1XT001C44N8/size=3677/"; + CAPTURE(testVParser.removeAbundances(seqName)); // Displays this variable on a FAIL + + CHECK(testVParser.removeAbundances(seqName) == "GQY1XT001C44N8"); + } +} +/**************************************************************************************************/ diff --git a/TestMothur/testvsearchfileparser.h b/TestMothur/testvsearchfileparser.h index 825841cd..64139b42 100644 --- a/TestMothur/testvsearchfileparser.h +++ b/TestMothur/testvsearchfileparser.h @@ -9,16 +9,16 @@ #ifndef __Mothur__testvsearchfileparser__ #define __Mothur__testvsearchfileparser__ + #include "vsearchfileparser.h" +#include "dataset.h" class TestVsearchFileParser : public VsearchFileParser { + public: - using VsearchFileParser::getNamesFile; - using VsearchFileParser::createVsearchFasta; using VsearchFileParser::removeAbundances; - }; diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index eab30c4a..d95543e9 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -155,7 +155,7 @@ #include "biominfocommand.h" //needed for testing project -//CommandFactory* CommandFactory::_uniqueInstance; +CommandFactory* CommandFactory::_uniqueInstance; /*******************************************************/ diff --git a/source/datastructures/fastqread.h b/source/datastructures/fastqread.h index fb5dc4b4..0a2e26e9 100644 --- a/source/datastructures/fastqread.h +++ b/source/datastructures/fastqread.h @@ -27,6 +27,11 @@ class FastqRead { public: + +#ifdef UNIT_TEST + friend class TestFastqRead; +#endif + FastqRead(); FastqRead(Sequence, QualityScores); FastqRead(Sequence, QualityScores, string); diff --git a/source/datastructures/referencedb.cpp b/source/datastructures/referencedb.cpp index 249d2db7..17de7e4c 100644 --- a/source/datastructures/referencedb.cpp +++ b/source/datastructures/referencedb.cpp @@ -10,7 +10,7 @@ #include "referencedb.h" //needed for testing project -//ReferenceDB* ReferenceDB::myInstance; +ReferenceDB* ReferenceDB::myInstance; /******************************************************/ ReferenceDB* ReferenceDB::getInstance() { diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 5ff8ac73..8c54d32d 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -10,7 +10,7 @@ #include "mothurout.h" //needed for testing project -//MothurOut* MothurOut::_uniqueInstance; +MothurOut* MothurOut::_uniqueInstance; /******************************************************/ MothurOut* MothurOut::getInstance() { diff --git a/source/vsearchfileparser.cpp b/source/vsearchfileparser.cpp index d938fc06..567c10a2 100644 --- a/source/vsearchfileparser.cpp +++ b/source/vsearchfileparser.cpp @@ -13,6 +13,20 @@ #include "sabundvector.hpp" /***********************************************************************/ +VsearchFileParser::VsearchFileParser(){ + try { + m = MothurOut::getInstance(); + fastafile = ""; + namefile = ""; + countfile = ""; + format = "count"; + } + catch(exception& e) { + m->errorOut(e, "VsearchFileParser", "VsearchFileParser"); + exit(1); + } +} +/***********************************************************************/ VsearchFileParser::VsearchFileParser(string f){ try { m = MothurOut::getInstance(); @@ -48,6 +62,8 @@ VsearchFileParser::VsearchFileParser(string f, string nameOrCount, string forma) /***********************************************************************/ string VsearchFileParser::getVsearchFile() { try { + if (fastafile == "") { m->mothurOut("[ERROR]: no fasta file given, cannot continue.\n"); m->control_pressed = true; } + //Run unique.seqs on the data if a name or count file is not given if ((namefile == "") && (countfile == "")) { countfile = getNamesFile(fastafile); } else if (namefile != "") { counts = m->readNames(namefile); } diff --git a/source/vsearchfileparser.h b/source/vsearchfileparser.h index 56fe3edc..b8f615ab 100644 --- a/source/vsearchfileparser.h +++ b/source/vsearchfileparser.h @@ -21,6 +21,7 @@ class VsearchFileParser { #endif public: + VsearchFileParser(); VsearchFileParser(string f); //fastafile VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") ~VsearchFileParser(){} @@ -28,7 +29,8 @@ class VsearchFileParser { string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. string getCountFile(); //returns count filename. If no names or count file is given, then a count file is generated. int createListFile(string uc, string listfile, string, string, int numbins, string label); //takes vsearch output and creates list file - int getNumBins(string logfile); + int getNumBins(string logfile); + void setFastaFile(string f) { fastafile = f; } private: MothurOut* m; From 3e40c959b9565c3a815ff570eee7005304005cff Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 29 Mar 2016 16:55:25 -0400 Subject: [PATCH 131/135] Adds vsearchfileparser and average linkage to testProject Resolves pesky linking issue --- Mothur.xcodeproj/project.pbxproj | 4 ++++ TestMothur/testvsearchfileparser.cpp | 29 ++++++++++++++++++----------- TestMothur/testvsearchfileparser.h | 11 +++++++++++ source/vsearchfileparser.h | 2 +- 4 files changed, 34 insertions(+), 12 deletions(-) diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 83d2a480..df750432 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -11,6 +11,8 @@ 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; }; 480E8DB11CAB12ED00A0D137 /* testfastqread.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 480E8DAF1CAB12ED00A0D137 /* testfastqread.cpp */; }; + 480E8DB21CAB1F5E00A0D137 /* vsearchfileparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 489B55701BCD7F0100FB7DC8 /* vsearchfileparser.cpp */; }; + 480E8DB31CAB1F7900A0D137 /* averagelinkage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 2114A7671C654D7400D3D8D9 /* averagelinkage.cpp */; }; 481623E21B56A2DB004C60B7 /* pcrseqscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481623E11B56A2DB004C60B7 /* pcrseqscommand.cpp */; }; 481FB51C1AC0A63E0076CFF3 /* main.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 481FB51B1AC0A63E0076CFF3 /* main.cpp */; }; 481FB5261AC0ADA00076CFF3 /* sequence.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7E9B7DB12D37EC400DA6239 /* sequence.cpp */; }; @@ -2674,6 +2676,7 @@ 481FB5461AC1B6190076CFF3 /* hamming.cpp in Sources */, 481FB6891AC1BA760076CFF3 /* phylosummary.cpp in Sources */, 481FB6881AC1B8B80076CFF3 /* weightedlinkage.cpp in Sources */, + 480E8DB21CAB1F5E00A0D137 /* vsearchfileparser.cpp in Sources */, 481FB61E1AC1B7AC0076CFF3 /* unifracweightedcommand.cpp in Sources */, 481FB5951AC1B71B0076CFF3 /* chimerabellerophoncommand.cpp in Sources */, 481FB68D1AC1BA9E0076CFF3 /* classify.cpp in Sources */, @@ -2856,6 +2859,7 @@ 481FB6731AC1B8820076CFF3 /* seqnoise.cpp in Sources */, 481FB5DC1AC1B75C0076CFF3 /* makelookupcommand.cpp in Sources */, 481FB53D1AC1B5F80076CFF3 /* bstick.cpp in Sources */, + 480E8DB31CAB1F7900A0D137 /* averagelinkage.cpp in Sources */, 481FB6681AC1B8450076CFF3 /* rarecalc.cpp in Sources */, 481FB60B1AC1B7AC0076CFF3 /* sffmultiplecommand.cpp in Sources */, 481FB59F1AC1B71B0076CFF3 /* classifyrfsharedcommand.cpp in Sources */, diff --git a/TestMothur/testvsearchfileparser.cpp b/TestMothur/testvsearchfileparser.cpp index 9618c3dd..20c7c7af 100644 --- a/TestMothur/testvsearchfileparser.cpp +++ b/TestMothur/testvsearchfileparser.cpp @@ -10,15 +10,22 @@ #include "testvsearchfileparser.h" /**************************************************************************************************/ +TestVsearchFileParser::TestVsearchFileParser() { //setup + m = MothurOut::getInstance(); + TestDataSet data; + filenames = data.getSubsetFNGFiles(10); + ct = data.getCountTable(); +} +/**************************************************************************************************/ +TestVsearchFileParser::~TestVsearchFileParser() { + delete ct; + for (int i = 0; i < filenames.size(); i++) { m->mothurRemove(filenames[i]); } //teardown +} +/**************************************************************************************************/ TEST_CASE("Testing VsearchParser Class") { - MothurOut* m = MothurOut::getInstance(); - TestDataSet data; - vector filenames = data.getSubsetFNGFiles(10); - CountTable* ct = data.getCountTable(); - - VsearchFileParser vsearchParser(filenames[0], filenames[1], "name"); TestVsearchFileParser testVParser; + VsearchFileParser vsearchParser(testVParser.filenames[0], testVParser.filenames[1], "name"); SECTION("CreateVsearchFasta") { INFO("Using First 10 sequences of final.fasta and final.names") // Only appears on a FAIL @@ -28,18 +35,18 @@ TEST_CASE("Testing VsearchParser Class") { CHECK(vsearchParser.getVsearchFile() == "tempSeqs.sorted.fasta.temp"); ifstream in; - m->openInputFile(vsearchParser.getVsearchFile(), in); + testVParser.m->openInputFile(vsearchParser.getVsearchFile(), in); while (!in.eof()) { - Sequence seq(in); m->gobble(in); + Sequence seq(in); testVParser.m->gobble(in); vector pieces; string name = seq.getName(); - m->splitAtChar(name, pieces, '='); + testVParser.m->splitAtChar(name, pieces, '='); string abundString = pieces[1].substr(0, pieces[1].length()-1); int abund = 0; - m->mothurConvert(abundString, abund); - int totalSeqs = ct->getNumSeqs(seq.getName()); + testVParser.m->mothurConvert(abundString, abund); + int totalSeqs = testVParser.ct->getNumSeqs(seq.getName()); CHECK(abund == totalSeqs); } diff --git a/TestMothur/testvsearchfileparser.h b/TestMothur/testvsearchfileparser.h index 64139b42..a89cf7dd 100644 --- a/TestMothur/testvsearchfileparser.h +++ b/TestMothur/testvsearchfileparser.h @@ -18,7 +18,18 @@ class TestVsearchFileParser : public VsearchFileParser { public: + TestVsearchFileParser(); + ~TestVsearchFileParser(); + + MothurOut* m; + TestDataSet data; + vector filenames; + CountTable* ct; + using VsearchFileParser::removeAbundances; + + + }; diff --git a/source/vsearchfileparser.h b/source/vsearchfileparser.h index b8f615ab..28f01f6b 100644 --- a/source/vsearchfileparser.h +++ b/source/vsearchfileparser.h @@ -21,9 +21,9 @@ class VsearchFileParser { #endif public: - VsearchFileParser(); VsearchFileParser(string f); //fastafile VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") + VsearchFileParser(); ~VsearchFileParser(){} string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. From fe8fbee71124926dda537554034ab1125ee4ec1e Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 30 Mar 2016 11:17:02 -0400 Subject: [PATCH 132/135] Fixed bug with class count Lefse command, Skipping iters warning --- source/commandfactory.cpp | 2 +- source/commands/lefsecommand.cpp | 18 +++++++++++------- source/datastructures/referencedb.cpp | 2 +- source/mothurout.cpp | 2 +- 4 files changed, 14 insertions(+), 10 deletions(-) diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index d95543e9..eab30c4a 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -155,7 +155,7 @@ #include "biominfocommand.h" //needed for testing project -CommandFactory* CommandFactory::_uniqueInstance; +//CommandFactory* CommandFactory::_uniqueInstance; /*******************************************************/ diff --git a/source/commands/lefsecommand.cpp b/source/commands/lefsecommand.cpp index d6019bf5..efacc3ea 100644 --- a/source/commands/lefsecommand.cpp +++ b/source/commands/lefsecommand.cpp @@ -767,8 +767,8 @@ map LefseCommand::testLDA(vector& lookup, int fractionNumGroups = numGroups * fBoots; //rfk minCl = (int)((float)(minCl*fBoots*fBoots*0.05)); minCl = max(minCl, 1); - - if (m->debug) { m->mothurOut("[DEBUG]: about to start iters. \n."); } + + if (m->debug) { m->mothurOut("[DEBUG]: about to start iters. FractionGroups = " + toString(fractionNumGroups) + "\n."); } vector< vector< vector > > results;//[iters][numComparison][numOTUs] for (int j = 0; j < iters; j++) { @@ -782,7 +782,9 @@ map LefseCommand::testLDA(vector& lookup, for (int h = 0; h < 1000; h++) { //generate a vector of length fractionNumGroups with range 0 to numGroups-1 save = h; rand_s.clear(); - for (int k = 0; k < fractionNumGroups; k++) { rand_s.push_back(m->getRandomIndex(numGroups-1)); } + for (int k = 0; k < fractionNumGroups; k++) { int index = m->getRandomIndex(numGroups-1); rand_s.push_back(index); + //if (m->debug) { m->mothurOut("[DEBUG]: index = " + toString(index) + "\n."); } + } if (!contastWithinClassesOrFewPerClass(adjustedLookup, rand_s, minCl, class2GroupIndex, indexToClass)) { h+=1000; save += 1000; } //break out of loop } if (m->control_pressed) { return sigOTUS; } @@ -950,13 +952,15 @@ vector< vector > LefseCommand::lda(vector< vector >& adjustedLoo //modelled after lefse.py contast_within_classes_or_few_per_class function bool LefseCommand::contastWithinClassesOrFewPerClass(vector< vector >& lookup, vector rands, int minCl, map > class2GroupIndex, map indexToClass) { try { - set cls; + map cls; int countFound = 0; for (int i = 0; i < rands.size(); i++) { //fill cls with the classes represented in the random selection for (map >::iterator it = class2GroupIndex.begin(); it != class2GroupIndex.end(); it++) { if (m->inUsersGroups(rands[i], (it->second))) { - cls.insert(it->first); + map::iterator itClass = cls.find(it->first); + if (itClass != cls.end()) { itClass->second++; } + else { cls[it->first] = 1; } countFound++; } } @@ -967,8 +971,8 @@ bool LefseCommand::contastWithinClassesOrFewPerClass(vector< vector >& l if (cls.size() < class2GroupIndex.size()) { return true; } //some classes are not present in sampling - for (set::iterator it = cls.begin(); it != cls.end(); it++) { - if (cls.count(*it) < minCl) { return true; } //this sampling has class count below minimum + for (map::iterator itClass = cls.begin(); itClass != cls.end(); itClass++) { + if (itClass->second < minCl) { return true; } //this sampling has class count below minimum } //for this otu diff --git a/source/datastructures/referencedb.cpp b/source/datastructures/referencedb.cpp index 17de7e4c..249d2db7 100644 --- a/source/datastructures/referencedb.cpp +++ b/source/datastructures/referencedb.cpp @@ -10,7 +10,7 @@ #include "referencedb.h" //needed for testing project -ReferenceDB* ReferenceDB::myInstance; +//ReferenceDB* ReferenceDB::myInstance; /******************************************************/ ReferenceDB* ReferenceDB::getInstance() { diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 8c54d32d..5ff8ac73 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -10,7 +10,7 @@ #include "mothurout.h" //needed for testing project -MothurOut* MothurOut::_uniqueInstance; +//MothurOut* MothurOut::_uniqueInstance; /******************************************************/ MothurOut* MothurOut::getInstance() { From 1c099fb890451978cb3cbf5504e5d2ba64f43cd1 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Wed, 30 Mar 2016 13:37:50 -0400 Subject: [PATCH 133/135] Adds unit tests for vsearchParser class --- TestMothur/testvsearchfileparser.cpp | 63 ++++++++++++++++++++++++++++++++--- TestMothur/testvsearchfileparser.h | 3 +- source/commandfactory.cpp | 2 +- source/datastructures/referencedb.cpp | 2 +- source/mothurout.cpp | 2 +- source/vsearchfileparser.cpp | 1 + source/vsearchfileparser.h | 2 +- 7 files changed, 65 insertions(+), 10 deletions(-) diff --git a/TestMothur/testvsearchfileparser.cpp b/TestMothur/testvsearchfileparser.cpp index 20c7c7af..dd5dbd9f 100644 --- a/TestMothur/testvsearchfileparser.cpp +++ b/TestMothur/testvsearchfileparser.cpp @@ -13,7 +13,7 @@ TestVsearchFileParser::TestVsearchFileParser() { //setup m = MothurOut::getInstance(); TestDataSet data; - filenames = data.getSubsetFNGFiles(10); + filenames = data.getSubsetFNGFiles(100); ct = data.getCountTable(); } /**************************************************************************************************/ @@ -28,11 +28,11 @@ TEST_CASE("Testing VsearchParser Class") { VsearchFileParser vsearchParser(testVParser.filenames[0], testVParser.filenames[1], "name"); SECTION("CreateVsearchFasta") { - INFO("Using First 10 sequences of final.fasta and final.names") // Only appears on a FAIL + INFO("Using First 100 sequences of final.fasta and final.names") // Only appears on a FAIL CAPTURE(vsearchParser.getVsearchFile()); // Displays this variable on a FAIL - CHECK(vsearchParser.getVsearchFile() == "tempSeqs.sorted.fasta.temp"); + CHECK(vsearchParser.getVsearchFile() == "tempSeqs.txt.sorted.fasta.temp"); ifstream in; testVParser.m->openInputFile(vsearchParser.getVsearchFile(), in); @@ -42,14 +42,17 @@ TEST_CASE("Testing VsearchParser Class") { vector pieces; string name = seq.getName(); + testVParser.m->splitAtChar(name, pieces, '='); string abundString = pieces[1].substr(0, pieces[1].length()-1); int abund = 0; testVParser.m->mothurConvert(abundString, abund); - int totalSeqs = testVParser.ct->getNumSeqs(seq.getName()); + int totalSeqs = testVParser.ct->getNumSeqs(testVParser.removeAbundances(name)); CHECK(abund == totalSeqs); } + in.close(); + testVParser.m->mothurRemove("tempSeqs.txt.sorted.fasta.temp"); } SECTION("Remove Abundances") { @@ -59,5 +62,57 @@ TEST_CASE("Testing VsearchParser Class") { CHECK(testVParser.removeAbundances(seqName) == "GQY1XT001C44N8"); } + + + SECTION("Create List File") { + INFO("Using lines like: S 1 275 * * * * * GQY1XT001C44N8/ab=3677/ *") // Only appears on a FAIL + + vsearchParser.getVsearchFile(); + ifstream in; + testVParser.m->openInputFile(vsearchParser.getVsearchFile(), in); + + vector seqNames; + while (!in.eof()) { + Sequence seq(in); testVParser.m->gobble(in); + string name = seq.getName(); + seqNames.push_back(name); + } + in.close(); + testVParser.m->mothurRemove("tempSeqs.txt.sorted.fasta.temp"); + + ofstream out; + testVParser.m->openOutputFile("temp.txt", out); + map binNames; + for (int i = 0; i < seqNames.size(); i++) { + int bin = (i+1)%10; + string name = testVParser.removeAbundances(seqNames[i]); + //name = (testVParser.data.getNameMap())[name]; //dup names + out << "S\t" + toString(bin) + "\t275\t*\t*\t*\t*\t*\t" + seqNames[i] + "\t*\n"; + + map::iterator it = binNames.find(bin); + if (it != binNames.end()) { it->second += "," + name; } + else { binNames[bin] = name; } + } + out.close(); + + int numBins = binNames.size(); + + testVParser.createListFile("temp.txt", "temp.list", "temp.rabund", "temp.sabund", numBins, "0.03"); + + ifstream in2; + testVParser.m->openInputFile("temp.list", in2); + ListVector list(in2); + in2.close(); + testVParser.m->mothurRemove("temp.list"); testVParser.m->mothurRemove("temp.rabund"); testVParser.m->mothurRemove("temp.sabund"); + + //for each bin + for (int i = 0; i < list.getNumBins(); i++) { + string binnames = list.get(i); + + CAPTURE(binnames); + + CHECK(binnames == binNames[i]); + } + } } /**************************************************************************************************/ diff --git a/TestMothur/testvsearchfileparser.h b/TestMothur/testvsearchfileparser.h index a89cf7dd..46103cfd 100644 --- a/TestMothur/testvsearchfileparser.h +++ b/TestMothur/testvsearchfileparser.h @@ -27,9 +27,8 @@ class TestVsearchFileParser : public VsearchFileParser { CountTable* ct; using VsearchFileParser::removeAbundances; + using VsearchFileParser::createListFile; - - }; diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index eab30c4a..d95543e9 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -155,7 +155,7 @@ #include "biominfocommand.h" //needed for testing project -//CommandFactory* CommandFactory::_uniqueInstance; +CommandFactory* CommandFactory::_uniqueInstance; /*******************************************************/ diff --git a/source/datastructures/referencedb.cpp b/source/datastructures/referencedb.cpp index 249d2db7..17de7e4c 100644 --- a/source/datastructures/referencedb.cpp +++ b/source/datastructures/referencedb.cpp @@ -10,7 +10,7 @@ #include "referencedb.h" //needed for testing project -//ReferenceDB* ReferenceDB::myInstance; +ReferenceDB* ReferenceDB::myInstance; /******************************************************/ ReferenceDB* ReferenceDB::getInstance() { diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 5ff8ac73..8c54d32d 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -10,7 +10,7 @@ #include "mothurout.h" //needed for testing project -//MothurOut* MothurOut::_uniqueInstance; +MothurOut* MothurOut::_uniqueInstance; /******************************************************/ MothurOut* MothurOut::getInstance() { diff --git a/source/vsearchfileparser.cpp b/source/vsearchfileparser.cpp index 567c10a2..752bc07d 100644 --- a/source/vsearchfileparser.cpp +++ b/source/vsearchfileparser.cpp @@ -177,6 +177,7 @@ int VsearchFileParser::createListFile(string inputFile, string listFile, string in >> recordType >> clusterNumber >> length >> percentIdentity >> strand >> notUsed1 >> notUsed2 >> compressedAlignment >> seqName >> repSequence; m->gobble(in); seqName = removeAbundances(seqName); + if (format == "name") { itName = nameMap.find(seqName); diff --git a/source/vsearchfileparser.h b/source/vsearchfileparser.h index 28f01f6b..6a3b0a4c 100644 --- a/source/vsearchfileparser.h +++ b/source/vsearchfileparser.h @@ -28,7 +28,7 @@ class VsearchFileParser { string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. string getCountFile(); //returns count filename. If no names or count file is given, then a count file is generated. - int createListFile(string uc, string listfile, string, string, int numbins, string label); //takes vsearch output and creates list file + int createListFile(string uc, string listfile, string sabund, string rabund, int numbins, string label); //takes vsearch output and creates list file int getNumBins(string logfile); void setFastaFile(string f) { fastafile = f; } From 0f0d89a871397c5ca5bf65a80b955da1ccf694d9 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Apr 2016 08:56:27 -0400 Subject: [PATCH 134/135] Trying to get back to a good state --- Mothur.xcodeproj/project.pbxproj | 10 + TestMothur/dataset.cpp | 2 +- TestMothur/dataset.h | 20 +- TestMothur/fastqdataset.cpp | 16032 ++++++++++++++++++++++++++ TestMothur/fastqdataset.h | 34 + TestMothur/testcontainers/testfastqread.cpp | 56 + TestMothur/testcontainers/testfastqread.h | 9 + source/commands/screenseqscommand.cpp | 2 +- source/datastructures/groupmap.cpp | 1 + source/vsearchfileparser.h | 2 +- 10 files changed, 16159 insertions(+), 9 deletions(-) mode change 100644 => 100755 TestMothur/dataset.cpp create mode 100644 TestMothur/fastqdataset.cpp create mode 100644 TestMothur/fastqdataset.h diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index df750432..c72dcaec 100755 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -371,6 +371,7 @@ 481FB6911AC1BAA60076CFF3 /* phylotree.cpp in Sources */ = {isa = PBXBuildFile; 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i < names.size(); i++) { string group = gMap->getGroup(names[i]); - + map::iterator it = groupCounts.find(group); //if not found, then this sequence is not from a group we care about diff --git a/TestMothur/dataset.h b/TestMothur/dataset.h index d3f9cc94..e7259223 100644 --- a/TestMothur/dataset.h +++ b/TestMothur/dataset.h @@ -9,37 +9,45 @@ #ifndef __Mothur__dataset__ #define __Mothur__dataset__ -#include #include "sequence.hpp" #include "counttable.h" #include "groupmap.h" #include "sharedrabundvector.h" +#include "fastqdataset.h" class TestDataSet { public: TestDataSet(); - vector getSeqs() { fillSeqs(); return seqs; } - map getNameMap() { fillNames(); return nameMap; } - GroupMap* getGroupMap() { fillGroup(); return gMap; } - CountTable* getCountTable() { createCountTable(); return ct; } - vector getLookup() { fillLookup(); return lookup; } + vector getSeqs() { fillSeqs(); return seqs; } + map getNameMap() { fillNames(); return nameMap; } + GroupMap* getGroupMap() { fillGroup(); return gMap; } + CountTable* getCountTable() { createCountTable(); return ct; } + vector getLookup() { fillLookup(); return lookup; } + vector getForwardFastq() { return fastqData.getForwardFastq(); } + vector getReverseFastq() { return fastqData.getReverseFastq(); } + vector getSubsetFRFastq(int n) { return fastqData.getSubsetFRFastq(n); } vector getSubsetFNGFiles(int); //number of uniques, Fasta, name, group returned private: MothurOut* m; + TestFastqDataSet fastqData; vector seqs; map nameMap; CountTable* ct; GroupMap* gMap; vector lookup; + vector ffastqReads; //F8D0 Sample + vector rfastqReads; //F8D0 Sample void fillNames(); void fillSeqs(); void fillGroup(); void createCountTable(); void fillLookup(); + void fillForwardFastq(); + void fillReverseFastq(); }; diff --git a/TestMothur/fastqdataset.cpp b/TestMothur/fastqdataset.cpp new file mode 100644 index 00000000..e8e1e37b --- /dev/null +++ b/TestMothur/fastqdataset.cpp @@ -0,0 +1,16032 @@ + +// +// fastqdataset.cpp +// Mothur +// +// Created by Sarah Westcott on 3/31/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#include "fastqdataset.h" + +/***********************************************************************/ +TestFastqDataSet::TestFastqDataSet() { m = MothurOut::getInstance(); } +/***********************************************************************/ +vector TestFastqDataSet::getSubsetFRFastq(int numSeqs) { + + fillForwardFastq(); + fillReverseFastq(); + ofstream out, out2; + m->openOutputFile("tempForward.txt", out); m->openOutputFile("tempReverse.txt", out2); + for (int i = 0; i < numSeqs; i++) { + ffastqReads[i].printFastq(out); + rfastqReads[i].printFastq(out2); + } + + vector filenames; filenames.push_back("tempForward.txt"); filenames.push_back("tempReverse.txt"); + + return filenames; +} +/***********************************************************************/ +void TestFastqDataSet::fillForwardFastq() { + vector scores; + FastqRead read1; read1.setName("M00967_44_000000000-A3K85_1_1101_16426_1716"); + read1.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); read1.setScores(scores); + ffastqReads.push_back(read1); + FastqRead read2; read2.setName("M00967_44_000000000-A3K85_1_1101_13261_1978"); + read2.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGCCTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGGCAACA"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); 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scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); read2.setScores(scores); + ffastqReads.push_back(read2); + FastqRead read3; read3.setName("M00967_44_000000000-A3K85_1_1101_13914_2140"); + read3.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read3.setScores(scores); + ffastqReads.push_back(read3); + FastqRead read4; read4.setName("M00967_44_000000000-A3K85_1_1101_14317_2429"); + read4.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(37); read4.setScores(scores); + ffastqReads.push_back(read4); + FastqRead read5; read5.setName("M00967_44_000000000-A3K85_1_1101_16984_2484"); + read5.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGGTGTCAAAACTACCGGCTCAACCGATAGTCGCACTCAAAACTGCAGCTCTTGAGTGAAGTAGAGGCAGGCGGGATTCCTAGTGTAGCGGTGGAATGCGGTGATATTAGGAGGGACACCAGTGGGGAAGGGGGCCCGCTGGGGTTTTACTTAAGCTTAGGCTCGCAAGGGGGGGGGGCCAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(25); read5.setScores(scores); + ffastqReads.push_back(read5); + FastqRead read6; read6.setName("M00967_44_000000000-A3K85_1_1101_19404_2607"); + read6.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(28); scores.push_back(37); read8.setScores(scores); + ffastqReads.push_back(read8); + FastqRead read9; read9.setName("M00967_44_000000000-A3K85_1_1101_19657_2857"); + read9.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read9.setScores(scores); + ffastqReads.push_back(read9); + FastqRead read10; read10.setName("M00967_44_000000000-A3K85_1_1101_12105_3062"); + read10.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGAAGCTGAGGCACGAAAGGGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); read10.setScores(scores); + ffastqReads.push_back(read10); + FastqRead read11; read11.setName("M00967_44_000000000-A3K85_1_1101_18891_3237"); + read11.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read11.setScores(scores); + ffastqReads.push_back(read11); + FastqRead read12; read12.setName("M00967_44_000000000-A3K85_1_1101_14107_3251"); + read12.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGCATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read12.setScores(scores); + ffastqReads.push_back(read12); + FastqRead read13; read13.setName("M00967_44_000000000-A3K85_1_1101_17862_3303"); + read13.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGGTGAAACTGGCGTTCTTGAGTGGGCGGGAAGTATGCGGAATGCGTGGGGTAGCGGTGAAATGCATAGATATCACGCCGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGGGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); read13.setScores(scores); + ffastqReads.push_back(read13); + FastqRead read14; read14.setName("M00967_44_000000000-A3K85_1_1101_16892_3727"); + read14.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); read14.setScores(scores); + ffastqReads.push_back(read14); + FastqRead read15; read15.setName("M00967_44_000000000-A3K85_1_1101_19976_3934"); + read15.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCCAGACAAGTCAGAAGTGAAAGCCCAGGGCTCAACCCTGGGACTGCTTTTGAAACTGCCGGGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(35); scores.push_back(27); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read15.setScores(scores); + ffastqReads.push_back(read15); + FastqRead read16; read16.setName("M00967_44_000000000-A3K85_1_1101_8238_3938"); + read16.setSeq("TACGGAGGATCCGAGCATTATCCGGAGTGACTGGGTGTAAAGAGTTGCGTAGGTGGCATAGTAAGTAGCTAGTGAAATCTGGTGGCTCAACCATTCAGACTATTAGCTAAACTGCTAAGCTCGAGACCGTTAGGGGTAACTGGAATTTCTAGTGTAGGAGTGAAATCCGTAGATATTAGAAGGAACACCGATAGCGTAGGCAGGTTACTGGGACGGTTCTGACACTAAGGCACGAAAGCGTAGGGAGCAAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read17.setScores(scores); + ffastqReads.push_back(read17); + FastqRead read18; read18.setName("M00967_44_000000000-A3K85_1_1101_22821_4157"); + read18.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAAGCAAGTTGAATGTTTAAGGTACGGGCTCAACCTGTACAAGCGTTCAAAACTGTTTTTCTTGAGTGGAGTAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAAATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGGCTTTAACTGACGCTGAGGCTCGAAAGCGTGGGTAGCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read18.setScores(scores); + ffastqReads.push_back(read18); + FastqRead read19; read19.setName("M00967_44_000000000-A3K85_1_1101_17852_4185"); + read19.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read20; read20.setName("M00967_44_000000000-A3K85_1_1101_18480_4201"); + read20.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(37); read20.setScores(scores); + ffastqReads.push_back(read20); + FastqRead read21; read21.setName("M00967_44_000000000-A3K85_1_1101_23838_4345"); + read21.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read21.setScores(scores); + ffastqReads.push_back(read21); + FastqRead read22; read22.setName("M00967_44_000000000-A3K85_1_1101_18767_4363"); + read22.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGGCAGTTAAGTCAGCGGTCAAAAGCCGGGGCTCAACCCATGCCTGCCATTGAAAAAAGTGGTCTCCAGGGGACGGGTAGTGTGAAGAATACTTGGTGGAGCGGGGGAAAACACAGAAGATATGGAGAACTACGATTGCGGCGGAGGCATACCGGCGCCACGATTCTGATGAGGCGGCAAAACGGGGGGGTCGAAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(14); read22.setScores(scores); + ffastqReads.push_back(read22); + FastqRead read23; read23.setName("M00967_44_000000000-A3K85_1_1101_23688_4365"); + read23.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read23.setScores(scores); + ffastqReads.push_back(read23); + FastqRead read24; read24.setName("M00967_44_000000000-A3K85_1_1101_11722_4402"); + read24.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCCTAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAAATGACGCTCATGCACGAAAGCGTGGGGATCGAAAAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(36); 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scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(14); read24.setScores(scores); + ffastqReads.push_back(read24); + FastqRead read25; read25.setName("M00967_44_000000000-A3K85_1_1101_17907_4466"); + read25.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read25.setScores(scores); + ffastqReads.push_back(read25); + FastqRead read26; read26.setName("M00967_44_000000000-A3K85_1_1101_24292_4560"); + read26.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read26.setScores(scores); + ffastqReads.push_back(read26); + FastqRead read27; read27.setName("M00967_44_000000000-A3K85_1_1101_10051_4697"); + read27.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGGAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); read27.setScores(scores); + ffastqReads.push_back(read27); + FastqRead read28; read28.setName("M00967_44_000000000-A3K85_1_1101_23618_4708"); + read28.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGACTTGCAAGTCTGATGTGAAAATCCGGGGCCCAACCCCGGAACTGCATTGGAAACTGTATATCTAGAGTGTCGGAGAGGCAAGTGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCAGTGGCAAAGGCGGCTTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read28.setScores(scores); + ffastqReads.push_back(read28); + FastqRead read29; read29.setName("M00967_44_000000000-A3K85_1_1101_16905_4868"); + read29.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read30.setScores(scores); + ffastqReads.push_back(read30); + FastqRead read31; read31.setName("M00967_44_000000000-A3K85_1_1101_8790_5160"); + read31.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGACGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGCCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read31.setScores(scores); + ffastqReads.push_back(read31); + FastqRead read32; read32.setName("M00967_44_000000000-A3K85_1_1101_24227_5213"); + read32.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); read32.setScores(scores); + ffastqReads.push_back(read32); + FastqRead read33; read33.setName("M00967_44_000000000-A3K85_1_1101_20401_5218"); + read33.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read33.setScores(scores); + ffastqReads.push_back(read33); + FastqRead read34; read34.setName("M00967_44_000000000-A3K85_1_1101_20650_5286"); + read34.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGGACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGGACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); read34.setScores(scores); + ffastqReads.push_back(read34); + FastqRead read35; read35.setName("M00967_44_000000000-A3K85_1_1101_24147_5290"); + read35.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); read36.setScores(scores); + ffastqReads.push_back(read36); + FastqRead read37; read37.setName("M00967_44_000000000-A3K85_1_1101_16472_5337"); + read37.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read37.setScores(scores); + ffastqReads.push_back(read37); + FastqRead read38; read38.setName("M00967_44_000000000-A3K85_1_1101_10378_5559"); + read38.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read38.setScores(scores); + ffastqReads.push_back(read38); + FastqRead read39; read39.setName("M00967_44_000000000-A3K85_1_1101_22557_5955"); + read39.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATCACTGGGTGTAAAGGGAGCGTAGACGGCTGAGCAAGCCTGAAGTGAAAGGCCAGGGCCCAACCCCTGGACTGCTTTGGGAACTGTGGGGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); read39.setScores(scores); + ffastqReads.push_back(read39); + FastqRead read40; read40.setName("M00967_44_000000000-A3K85_1_1101_17938_6085"); + read40.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); read40.setScores(scores); + ffastqReads.push_back(read40); + FastqRead read41; read41.setName("M00967_44_000000000-A3K85_1_1101_17246_6091"); + read41.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read41.setScores(scores); + ffastqReads.push_back(read41); + FastqRead read42; read42.setName("M00967_44_000000000-A3K85_1_1101_10742_6111"); + read42.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTAAAACTGGCAGCCTTAAGTACAGTAGAGGTGGGCGGAATTCGGGGGGAAGCGGGGAAATGCTTAGATATCCCCAAGAACTCCGATTGCGAGGGCAGCTCCCGGGACGGCAACTGACACGGATGCCCAAAAGGGTGGGAATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); 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scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(12); read42.setScores(scores); + ffastqReads.push_back(read42); + FastqRead read43; read43.setName("M00967_44_000000000-A3K85_1_1101_24587_6131"); + read43.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTTGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read43.setScores(scores); + ffastqReads.push_back(read43); + FastqRead read44; read44.setName("M00967_44_000000000-A3K85_1_1101_10973_6275"); + read44.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read44.setScores(scores); + ffastqReads.push_back(read44); + FastqRead read45; read45.setName("M00967_44_000000000-A3K85_1_1101_13172_6283"); + read45.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read45.setScores(scores); + ffastqReads.push_back(read45); + FastqRead read46; read46.setName("M00967_44_000000000-A3K85_1_1101_10990_6283"); + read46.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read46.setScores(scores); + ffastqReads.push_back(read46); + FastqRead read47; read47.setName("M00967_44_000000000-A3K85_1_1101_18756_6332"); + read47.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATAACACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); read47.setScores(scores); + ffastqReads.push_back(read47); + FastqRead read48; read48.setName("M00967_44_000000000-A3K85_1_1101_23297_6573"); + read48.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read48.setScores(scores); + ffastqReads.push_back(read48); + FastqRead read49; read49.setName("M00967_44_000000000-A3K85_1_1101_17839_6735"); + read49.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCAGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read49.setScores(scores); + ffastqReads.push_back(read49); + FastqRead read50; read50.setName("M00967_44_000000000-A3K85_1_1101_22930_6755"); + read50.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); read50.setScores(scores); + ffastqReads.push_back(read50); + FastqRead read51; read51.setName("M00967_44_000000000-A3K85_1_1101_10511_6811"); + read51.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read51.setScores(scores); + ffastqReads.push_back(read51); + FastqRead read52; read52.setName("M00967_44_000000000-A3K85_1_1101_21910_6926"); + read52.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read52.setScores(scores); + ffastqReads.push_back(read52); + FastqRead read53; read53.setName("M00967_44_000000000-A3K85_1_1101_6027_7033"); + read53.setSeq("TACGGAGGATGCGAACGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read53.setScores(scores); + ffastqReads.push_back(read53); + FastqRead read54; read54.setName("M00967_44_000000000-A3K85_1_1101_21920_7059"); + read54.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read54.setScores(scores); + ffastqReads.push_back(read54); + FastqRead read55; read55.setName("M00967_44_000000000-A3K85_1_1101_21937_7124"); + read55.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGCAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read55.setScores(scores); + ffastqReads.push_back(read55); + FastqRead read56; read56.setName("M00967_44_000000000-A3K85_1_1101_14128_7160"); + read56.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(25); read56.setScores(scores); + ffastqReads.push_back(read56); + FastqRead read57; read57.setName("M00967_44_000000000-A3K85_1_1101_4815_7242"); + read57.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); read57.setScores(scores); + ffastqReads.push_back(read57); + FastqRead read58; read58.setName("M00967_44_000000000-A3K85_1_1101_12541_7269"); + read58.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCATTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(17); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(31); 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scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read58.setScores(scores); + ffastqReads.push_back(read58); + FastqRead read59; read59.setName("M00967_44_000000000-A3K85_1_1101_9919_7301"); + read59.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(37); read59.setScores(scores); + ffastqReads.push_back(read59); + FastqRead read60; read60.setName("M00967_44_000000000-A3K85_1_1101_5214_7309"); + read60.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); read60.setScores(scores); + ffastqReads.push_back(read60); + FastqRead read61; read61.setName("M00967_44_000000000-A3K85_1_1101_10336_7408"); + read61.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read62; read62.setName("M00967_44_000000000-A3K85_1_1101_4870_7443"); + read62.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read62.setScores(scores); + ffastqReads.push_back(read62); + FastqRead read63; read63.setName("M00967_44_000000000-A3K85_1_1101_15991_7498"); + read63.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read63.setScores(scores); + ffastqReads.push_back(read63); + FastqRead read64; read64.setName("M00967_44_000000000-A3K85_1_1101_10419_7547"); + read64.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read64.setScores(scores); + ffastqReads.push_back(read64); + FastqRead read65; read65.setName("M00967_44_000000000-A3K85_1_1101_22469_7553"); + read65.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); read65.setScores(scores); + ffastqReads.push_back(read65); + FastqRead read66; read66.setName("M00967_44_000000000-A3K85_1_1101_10312_7727"); + read66.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); read66.setScores(scores); + ffastqReads.push_back(read66); + FastqRead read67; read67.setName("M00967_44_000000000-A3K85_1_1101_11399_7830"); + read67.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read67.setScores(scores); + ffastqReads.push_back(read67); + FastqRead read68; read68.setName("M00967_44_000000000-A3K85_1_1101_17905_7831"); + read68.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read68.setScores(scores); + ffastqReads.push_back(read68); + FastqRead read69; read69.setName("M00967_44_000000000-A3K85_1_1101_20714_8004"); + read69.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(26); scores.push_back(29); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(13); read69.setScores(scores); + ffastqReads.push_back(read69); + FastqRead read70; read70.setName("M00967_44_000000000-A3K85_1_1101_26645_8005"); + read70.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read70.setScores(scores); + ffastqReads.push_back(read70); + FastqRead read71; read71.setName("M00967_44_000000000-A3K85_1_1101_26632_8017"); + read71.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGGCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read72.setScores(scores); + ffastqReads.push_back(read72); + FastqRead read73; read73.setName("M00967_44_000000000-A3K85_1_1101_13719_8076"); + read73.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read73.setScores(scores); + ffastqReads.push_back(read73); + FastqRead read74; read74.setName("M00967_44_000000000-A3K85_1_1101_15650_8190"); + read74.setSeq("TACAGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(37); read74.setScores(scores); + ffastqReads.push_back(read74); + FastqRead read75; read75.setName("M00967_44_000000000-A3K85_1_1101_12248_8236"); + read75.setSeq("TACGTAGGATCCGAGCATTATCCGGAGTGACTGGGTGTAAAGAGTTGCGTAGGTGGCATAGTAAGTAGCTAGTGAAATCTGGTGGCTCAACCATTCAGACTATTAGCTAAACTGCTAAGCTCGAGACCGTTAGGGGTAACTGGAATTTCTAGTGTAGGAGTGAAATCCGTAGATATTAGAAGGAACACCGATAGCGTAGGCAGGTTACTGGGACGGTTCTGACACTAAGGCACGAAAGCGTAGGGAGCAAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read75.setScores(scores); + ffastqReads.push_back(read75); + FastqRead read76; read76.setName("M00967_44_000000000-A3K85_1_1101_18646_8324"); + read76.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read76.setScores(scores); + ffastqReads.push_back(read76); + FastqRead read77; read77.setName("M00967_44_000000000-A3K85_1_1101_10827_8327"); + read77.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); read77.setScores(scores); + ffastqReads.push_back(read77); + FastqRead read78; read78.setName("M00967_44_000000000-A3K85_1_1101_13846_8328"); + read78.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read78.setScores(scores); + ffastqReads.push_back(read78); + FastqRead read79; read79.setName("M00967_44_000000000-A3K85_1_1101_19501_8358"); + read79.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGGGGGGGGCAAAAA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(25); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(13); read79.setScores(scores); + ffastqReads.push_back(read79); + FastqRead read80; read80.setName("M00967_44_000000000-A3K85_1_1101_4368_8424"); + read80.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); read80.setScores(scores); + ffastqReads.push_back(read80); + FastqRead read81; read81.setName("M00967_44_000000000-A3K85_1_1101_12165_8481"); + read81.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read81.setScores(scores); + ffastqReads.push_back(read81); + FastqRead read82; read82.setName("M00967_44_000000000-A3K85_1_1101_19660_8492"); + read82.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read82.setScores(scores); + ffastqReads.push_back(read82); + FastqRead read83; read83.setName("M00967_44_000000000-A3K85_1_1101_12259_8527"); + read83.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); read83.setScores(scores); + ffastqReads.push_back(read83); + FastqRead read84; read84.setName("M00967_44_000000000-A3K85_1_1101_21543_8616"); + read84.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGGGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read86.setScores(scores); + ffastqReads.push_back(read86); + FastqRead read87; read87.setName("M00967_44_000000000-A3K85_1_1101_19754_8653"); + read87.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read87.setScores(scores); + ffastqReads.push_back(read87); + FastqRead read88; read88.setName("M00967_44_000000000-A3K85_1_1101_13364_8671"); + read88.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read88.setScores(scores); + ffastqReads.push_back(read88); + FastqRead read89; read89.setName("M00967_44_000000000-A3K85_1_1101_11138_8749"); + read89.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read89.setScores(scores); + ffastqReads.push_back(read89); + FastqRead read90; read90.setName("M00967_44_000000000-A3K85_1_1101_21574_8754"); + read90.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read90.setScores(scores); + ffastqReads.push_back(read90); + FastqRead read91; read91.setName("M00967_44_000000000-A3K85_1_1101_15243_8862"); + read91.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); read91.setScores(scores); + ffastqReads.push_back(read91); + FastqRead read92; read92.setName("M00967_44_000000000-A3K85_1_1101_6881_8899"); + read92.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read92.setScores(scores); + ffastqReads.push_back(read92); + FastqRead read93; read93.setName("M00967_44_000000000-A3K85_1_1101_5965_8984"); + read93.setSeq("TACGGAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read93.setScores(scores); + ffastqReads.push_back(read93); + FastqRead read94; read94.setName("M00967_44_000000000-A3K85_1_1101_12421_8991"); + read94.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read94.setScores(scores); + ffastqReads.push_back(read94); + FastqRead read95; read95.setName("M00967_44_000000000-A3K85_1_1101_16416_9000"); + read95.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read95.setScores(scores); + ffastqReads.push_back(read95); + FastqRead read96; read96.setName("M00967_44_000000000-A3K85_1_1101_5471_9031"); + read96.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read96.setScores(scores); + ffastqReads.push_back(read96); + FastqRead read97; read97.setName("M00967_44_000000000-A3K85_1_1101_20723_9042"); + read97.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(25); read98.setScores(scores); + ffastqReads.push_back(read98); + FastqRead read99; read99.setName("M00967_44_000000000-A3K85_1_1101_8534_9075"); + read99.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read99.setScores(scores); + ffastqReads.push_back(read99); + FastqRead read100; read100.setName("M00967_44_000000000-A3K85_1_1101_24265_9168"); + read100.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); 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scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read100.setScores(scores); + ffastqReads.push_back(read100); + FastqRead read101; read101.setName("M00967_44_000000000-A3K85_1_1101_24708_9299"); + read101.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read101.setScores(scores); + ffastqReads.push_back(read101); + FastqRead read102; read102.setName("M00967_44_000000000-A3K85_1_1101_12689_9330"); + read102.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(31); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(12); read102.setScores(scores); + ffastqReads.push_back(read102); + FastqRead read103; read103.setName("M00967_44_000000000-A3K85_1_1101_27735_9353"); + read103.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); read103.setScores(scores); + ffastqReads.push_back(read103); + FastqRead read104; read104.setName("M00967_44_000000000-A3K85_1_1101_19351_9374"); + read104.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read104.setScores(scores); + ffastqReads.push_back(read104); + FastqRead read105; read105.setName("M00967_44_000000000-A3K85_1_1101_13561_9427"); + read105.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGGGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(28); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(27); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(27); read105.setScores(scores); + ffastqReads.push_back(read105); + FastqRead read106; read106.setName("M00967_44_000000000-A3K85_1_1101_8736_9452"); + read106.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTCGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCCTGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(33); read106.setScores(scores); + ffastqReads.push_back(read106); + FastqRead read107; read107.setName("M00967_44_000000000-A3K85_1_1101_20139_9693"); + read107.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); read108.setScores(scores); + ffastqReads.push_back(read108); + FastqRead read109; read109.setName("M00967_44_000000000-A3K85_1_1101_10994_9747"); + read109.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read109.setScores(scores); + ffastqReads.push_back(read109); + FastqRead read110; read110.setName("M00967_44_000000000-A3K85_1_1101_3255_9762"); + read110.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCACTTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGAAACTGACGTTGAGGCTCGAAATCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(18); scores.push_back(19); scores.push_back(19); scores.push_back(29); scores.push_back(29); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(29); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); read110.setScores(scores); + ffastqReads.push_back(read110); + FastqRead read111; read111.setName("M00967_44_000000000-A3K85_1_1101_21004_9829"); + read111.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read111.setScores(scores); + ffastqReads.push_back(read111); + FastqRead read112; read112.setName("M00967_44_000000000-A3K85_1_1101_27704_9939"); + read112.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read112.setScores(scores); + ffastqReads.push_back(read112); + FastqRead read113; read113.setName("M00967_44_000000000-A3K85_1_1101_21801_9940"); + read113.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); 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scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read115.setScores(scores); + ffastqReads.push_back(read115); + FastqRead read116; read116.setName("M00967_44_000000000-A3K85_1_1101_21278_10112"); + read116.setSeq("TACGGAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCGCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(13); read116.setScores(scores); + ffastqReads.push_back(read116); + FastqRead read117; read117.setName("M00967_44_000000000-A3K85_1_1101_19330_10126"); + read117.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGTGGGTATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read117.setScores(scores); + ffastqReads.push_back(read117); + FastqRead read118; read118.setName("M00967_44_000000000-A3K85_1_1101_9255_10164"); + read118.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTCAGGCACGAAAGCGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(27); scores.push_back(32); scores.push_back(14); scores.push_back(27); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(27); read118.setScores(scores); + ffastqReads.push_back(read118); + FastqRead read119; read119.setName("M00967_44_000000000-A3K85_1_1101_4387_10169"); + read119.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read119.setScores(scores); + ffastqReads.push_back(read119); + FastqRead read120; read120.setName("M00967_44_000000000-A3K85_1_1101_6605_10173"); + read120.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(28); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); read120.setScores(scores); + ffastqReads.push_back(read120); + FastqRead read121; read121.setName("M00967_44_000000000-A3K85_1_1101_6954_10206"); + read121.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTTCCTCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(28); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read121.setScores(scores); + ffastqReads.push_back(read121); + FastqRead read122; read122.setName("M00967_44_000000000-A3K85_1_1101_7527_10303"); + read122.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read122.setScores(scores); + ffastqReads.push_back(read122); + FastqRead read123; read123.setName("M00967_44_000000000-A3K85_1_1101_24337_10344"); + read123.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); read123.setScores(scores); + ffastqReads.push_back(read123); + FastqRead read124; read124.setName("M00967_44_000000000-A3K85_1_1101_22387_10347"); + read124.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCTAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read124.setScores(scores); + ffastqReads.push_back(read124); + FastqRead read125; read125.setName("M00967_44_000000000-A3K85_1_1101_18889_10362"); + read125.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read125.setScores(scores); + ffastqReads.push_back(read125); + FastqRead read126; read126.setName("M00967_44_000000000-A3K85_1_1101_18780_10395"); + read126.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read128.setScores(scores); + ffastqReads.push_back(read128); + FastqRead read129; read129.setName("M00967_44_000000000-A3K85_1_1101_26835_10541"); + read129.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGGGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read129.setScores(scores); + ffastqReads.push_back(read129); + FastqRead read130; read130.setName("M00967_44_000000000-A3K85_1_1101_25040_10597"); + read130.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read130.setScores(scores); + ffastqReads.push_back(read130); + FastqRead read131; read131.setName("M00967_44_000000000-A3K85_1_1101_22851_10787"); + read131.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read131.setScores(scores); + ffastqReads.push_back(read131); + FastqRead read132; read132.setName("M00967_44_000000000-A3K85_1_1101_16735_10948"); + read132.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(14); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read132.setScores(scores); + ffastqReads.push_back(read132); + FastqRead read133; read133.setName("M00967_44_000000000-A3K85_1_1101_22481_10976"); + read133.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATTTGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGGAGCGAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); read133.setScores(scores); + ffastqReads.push_back(read133); + FastqRead read134; read134.setName("M00967_44_000000000-A3K85_1_1101_18225_10999"); + read134.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); read134.setScores(scores); + ffastqReads.push_back(read134); + FastqRead read135; read135.setName("M00967_44_000000000-A3K85_1_1101_13511_11032"); + read135.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read135.setScores(scores); + ffastqReads.push_back(read135); + FastqRead read136; read136.setName("M00967_44_000000000-A3K85_1_1101_27264_11056"); + read136.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read136.setScores(scores); + ffastqReads.push_back(read136); + FastqRead read137; read137.setName("M00967_44_000000000-A3K85_1_1101_17213_11062"); + read137.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read137.setScores(scores); + ffastqReads.push_back(read137); + FastqRead read138; read138.setName("M00967_44_000000000-A3K85_1_1101_18943_11082"); + read138.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGTCTGAAGTGAAAGCCCAGGGCTCAACCCTGGGACTGCTTTGGAAACTGTGGAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read138.setScores(scores); + ffastqReads.push_back(read138); + FastqRead read139; read139.setName("M00967_44_000000000-A3K85_1_1101_17868_11113"); + read139.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(27); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read140.setScores(scores); + ffastqReads.push_back(read140); + FastqRead read141; read141.setName("M00967_44_000000000-A3K85_1_1101_14735_11235"); + read141.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read141.setScores(scores); + ffastqReads.push_back(read141); + FastqRead read142; read142.setName("M00967_44_000000000-A3K85_1_1101_16074_11244"); + read142.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGAATGCAACTGAAACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read142.setScores(scores); + ffastqReads.push_back(read142); + FastqRead read143; read143.setName("M00967_44_000000000-A3K85_1_1101_7593_11252"); + read143.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read143.setScores(scores); + ffastqReads.push_back(read143); + FastqRead read144; read144.setName("M00967_44_000000000-A3K85_1_1101_12857_11252"); + read144.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(20); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read144.setScores(scores); + ffastqReads.push_back(read144); + FastqRead read145; read145.setName("M00967_44_000000000-A3K85_1_1101_15147_11308"); + read145.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(25); scores.push_back(36); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); read145.setScores(scores); + ffastqReads.push_back(read145); + FastqRead read146; read146.setName("M00967_44_000000000-A3K85_1_1101_18698_11342"); + read146.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read146.setScores(scores); + ffastqReads.push_back(read146); + FastqRead read147; read147.setName("M00967_44_000000000-A3K85_1_1101_16136_11420"); + read147.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read147.setScores(scores); + ffastqReads.push_back(read147); + FastqRead read148; read148.setName("M00967_44_000000000-A3K85_1_1101_13333_11429"); + read148.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGGGCCAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); read148.setScores(scores); + ffastqReads.push_back(read148); + FastqRead read149; read149.setName("M00967_44_000000000-A3K85_1_1101_10743_11432"); + read149.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read150.setScores(scores); + ffastqReads.push_back(read150); + FastqRead read151; read151.setName("M00967_44_000000000-A3K85_1_1101_20676_11509"); + read151.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGGGGCAAGTCTGGAGTGAAAGGCCGGGGCCCAACCCCGGGACCGCTCTGGAAACTGCCCGGCTGGAGTGCGGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGCGGCGAAGGCGGCTTACTGGACCGTGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read151.setScores(scores); + ffastqReads.push_back(read151); + FastqRead read152; read152.setName("M00967_44_000000000-A3K85_1_1101_17571_11522"); + read152.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGTGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read153; read153.setName("M00967_44_000000000-A3K85_1_1101_14976_11522"); + read153.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); read153.setScores(scores); + ffastqReads.push_back(read153); + FastqRead read154; read154.setName("M00967_44_000000000-A3K85_1_1101_17702_11563"); + read154.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(27); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); read154.setScores(scores); + ffastqReads.push_back(read154); + FastqRead read155; read155.setName("M00967_44_000000000-A3K85_1_1101_9426_11659"); + read155.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(14); read156.setScores(scores); + ffastqReads.push_back(read156); + FastqRead read157; read157.setName("M00967_44_000000000-A3K85_1_1101_6200_11675"); + read157.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read157.setScores(scores); + ffastqReads.push_back(read157); + FastqRead read158; read158.setName("M00967_44_000000000-A3K85_1_1101_23383_11740"); + read158.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read158.setScores(scores); + ffastqReads.push_back(read158); + FastqRead read159; read159.setName("M00967_44_000000000-A3K85_1_1101_6853_11772"); + read159.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read159.setScores(scores); + ffastqReads.push_back(read159); + FastqRead read160; read160.setName("M00967_44_000000000-A3K85_1_1101_22387_11869"); + read160.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read160.setScores(scores); + ffastqReads.push_back(read160); + FastqRead read161; read161.setName("M00967_44_000000000-A3K85_1_1101_19628_11889"); + read161.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); read161.setScores(scores); + ffastqReads.push_back(read161); + FastqRead read162; read162.setName("M00967_44_000000000-A3K85_1_1101_27999_11894"); + read162.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read164.setScores(scores); + ffastqReads.push_back(read164); + FastqRead read165; read165.setName("M00967_44_000000000-A3K85_1_1101_7746_12226"); + read165.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read165.setScores(scores); + ffastqReads.push_back(read165); + FastqRead read166; read166.setName("M00967_44_000000000-A3K85_1_1101_8486_12249"); + read166.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGGAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read166.setScores(scores); + ffastqReads.push_back(read166); + FastqRead read167; read167.setName("M00967_44_000000000-A3K85_1_1101_12335_12280"); + read167.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(26); read167.setScores(scores); + ffastqReads.push_back(read167); + FastqRead read168; read168.setName("M00967_44_000000000-A3K85_1_1101_6614_12305"); + read168.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read169.setScores(scores); + ffastqReads.push_back(read169); + FastqRead read170; read170.setName("M00967_44_000000000-A3K85_1_1101_8387_12354"); + read170.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read170.setScores(scores); + ffastqReads.push_back(read170); + FastqRead read171; read171.setName("M00967_44_000000000-A3K85_1_1101_6344_12374"); + read171.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read171.setScores(scores); + ffastqReads.push_back(read171); + FastqRead read172; read172.setName("M00967_44_000000000-A3K85_1_1101_16026_12423"); + read172.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read172.setScores(scores); + ffastqReads.push_back(read172); + FastqRead read173; read173.setName("M00967_44_000000000-A3K85_1_1101_25548_12592"); + read173.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGGGAGGCGCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); read173.setScores(scores); + ffastqReads.push_back(read173); + FastqRead read174; read174.setName("M00967_44_000000000-A3K85_1_1101_20296_12613"); + read174.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAGCCAAGTCAGCTGTGAAAACTACGGGCTTAACCTGTAGACTGCAGTTGAAACTGGCTTTCTTGAGTGAAGTAGAGGTTGGCGGAATTCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCGGTGGCGAAGGCGGCCAACTGGGCTTTAACTGACGCTGAGGCTCGAAAGGGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(28); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(13); read174.setScores(scores); + ffastqReads.push_back(read174); + FastqRead read175; read175.setName("M00967_44_000000000-A3K85_1_1101_21558_12633"); + read175.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read175.setScores(scores); + ffastqReads.push_back(read175); + FastqRead read176; read176.setName("M00967_44_000000000-A3K85_1_1101_11361_12648"); + read176.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACGG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read176.setScores(scores); + ffastqReads.push_back(read176); + FastqRead read177; read177.setName("M00967_44_000000000-A3K85_1_1101_18054_12652"); + read177.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read177.setScores(scores); + ffastqReads.push_back(read177); + FastqRead read178; read178.setName("M00967_44_000000000-A3K85_1_1101_25239_12770"); + read178.setSeq("TACGGAGGATGCTAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read178.setScores(scores); + ffastqReads.push_back(read178); + FastqRead read179; read179.setName("M00967_44_000000000-A3K85_1_1101_24418_12852"); + read179.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read179.setScores(scores); + ffastqReads.push_back(read179); + FastqRead read180; read180.setName("M00967_44_000000000-A3K85_1_1101_29053_12897"); + read180.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(37); read180.setScores(scores); + ffastqReads.push_back(read180); + FastqRead read181; read181.setName("M00967_44_000000000-A3K85_1_1101_13344_12926"); + read181.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); read182.setScores(scores); + ffastqReads.push_back(read182); + FastqRead read183; read183.setName("M00967_44_000000000-A3K85_1_1101_24501_12971"); + read183.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read183.setScores(scores); + ffastqReads.push_back(read183); + FastqRead read184; read184.setName("M00967_44_000000000-A3K85_1_1101_22908_13029"); + read184.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACCGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGACGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read184.setScores(scores); + ffastqReads.push_back(read184); + FastqRead read185; read185.setName("M00967_44_000000000-A3K85_1_1101_9019_13064"); + read185.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read185.setScores(scores); + ffastqReads.push_back(read185); + FastqRead read186; read186.setName("M00967_44_000000000-A3K85_1_1101_10678_13072"); + read186.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(17); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read186.setScores(scores); + ffastqReads.push_back(read186); + FastqRead read187; read187.setName("M00967_44_000000000-A3K85_1_1101_20324_13084"); + read187.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCGCGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read187.setScores(scores); + ffastqReads.push_back(read187); + FastqRead read188; read188.setName("M00967_44_000000000-A3K85_1_1101_28390_13134"); + read188.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(13); read188.setScores(scores); + ffastqReads.push_back(read188); + FastqRead read189; read189.setName("M00967_44_000000000-A3K85_1_1101_17688_13139"); + read189.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read189.setScores(scores); + ffastqReads.push_back(read189); + FastqRead read190; read190.setName("M00967_44_000000000-A3K85_1_1101_27846_13162"); + read190.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read190.setScores(scores); + ffastqReads.push_back(read190); + FastqRead read191; read191.setName("M00967_44_000000000-A3K85_1_1101_7557_13169"); + read191.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGCAATGCGTAGATATTAGGAGGAACACCCGTGGCGAAGGCGGCCTGCTGGAACATGACTGACGATGAGGCTCGCAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read192.setScores(scores); + ffastqReads.push_back(read192); + FastqRead read193; read193.setName("M00967_44_000000000-A3K85_1_1101_15104_13261"); + read193.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read193.setScores(scores); + ffastqReads.push_back(read193); + FastqRead read194; read194.setName("M00967_44_000000000-A3K85_1_1101_15954_13322"); + read194.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read195; read195.setName("M00967_44_000000000-A3K85_1_1101_25760_13415"); + read195.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read195.setScores(scores); + ffastqReads.push_back(read195); + FastqRead read196; read196.setName("M00967_44_000000000-A3K85_1_1101_25887_13447"); + read196.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read196.setScores(scores); + ffastqReads.push_back(read196); + FastqRead read197; read197.setName("M00967_44_000000000-A3K85_1_1101_27540_13512"); + read197.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read197.setScores(scores); + ffastqReads.push_back(read197); + FastqRead read198; read198.setName("M00967_44_000000000-A3K85_1_1101_5431_13518"); + read198.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read198.setScores(scores); + ffastqReads.push_back(read198); + FastqRead read199; read199.setName("M00967_44_000000000-A3K85_1_1101_13397_13589"); + read199.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCCAAGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGCGACTGACGTTGAGGCTCGAAAGGGTGGGTATCGAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(32); scores.push_back(28); read199.setScores(scores); + ffastqReads.push_back(read199); + FastqRead read200; read200.setName("M00967_44_000000000-A3K85_1_1101_6168_13598"); + read200.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read200.setScores(scores); + ffastqReads.push_back(read200); + FastqRead read201; read201.setName("M00967_44_000000000-A3K85_1_1101_21281_13646"); + read201.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(14); read201.setScores(scores); + ffastqReads.push_back(read201); + FastqRead read202; read202.setName("M00967_44_000000000-A3K85_1_1101_25468_13668"); + read202.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(13); read202.setScores(scores); + ffastqReads.push_back(read202); + FastqRead read203; read203.setName("M00967_44_000000000-A3K85_1_1101_6168_13708"); + read203.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read203.setScores(scores); + ffastqReads.push_back(read203); + FastqRead read204; read204.setName("M00967_44_000000000-A3K85_1_1101_9620_13721"); + read204.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGTGCAAGTCCGGAGTGAAAGCCCGGGGCTCAACCCTGGGACTGCTCTGGAAACTGTAAAGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); 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scores.push_back(36); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(28); scores.push_back(13); scores.push_back(27); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read206.setScores(scores); + ffastqReads.push_back(read206); + FastqRead read207; read207.setName("M00967_44_000000000-A3K85_1_1101_3245_13775"); + read207.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read207.setScores(scores); + ffastqReads.push_back(read207); + FastqRead read208; read208.setName("M00967_44_000000000-A3K85_1_1101_26752_13849"); + read208.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read208.setScores(scores); + ffastqReads.push_back(read208); + FastqRead read209; read209.setName("M00967_44_000000000-A3K85_1_1101_23338_13856"); + read209.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGGAACCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(29); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); read209.setScores(scores); + ffastqReads.push_back(read209); + FastqRead read210; read210.setName("M00967_44_000000000-A3K85_1_1101_6877_13878"); + read210.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read210.setScores(scores); + ffastqReads.push_back(read210); + FastqRead read211; read211.setName("M00967_44_000000000-A3K85_1_1101_17415_13881"); + read211.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read211.setScores(scores); + ffastqReads.push_back(read211); + FastqRead read212; read212.setName("M00967_44_000000000-A3K85_1_1101_12676_13910"); + read212.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read212.setScores(scores); + ffastqReads.push_back(read212); + FastqRead read213; read213.setName("M00967_44_000000000-A3K85_1_1101_4369_13960"); + read213.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGCGCGTTAAGCCTGGTGTGAAAGCCCGCGGCCCAACCGCGGGACTGCATTGGGAACTGGCGCGCTGGAGTGCCGGAGGGGTAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTGACTGACGCTGAGGCTCGGAAGCGTGGGGAGGAAACA"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(28); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); read213.setScores(scores); + ffastqReads.push_back(read213); + FastqRead read214; read214.setName("M00967_44_000000000-A3K85_1_1101_4387_13964"); + read214.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGCGCGTTAAGCCTGGTGTGAAAGCCCGCGGCCCAACCGCGGGACTGCATTGGGAACTGGCGCGCTGGAGTGCCGGAGGGGTAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTACTGGACGGTGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read214.setScores(scores); + ffastqReads.push_back(read214); + FastqRead read215; read215.setName("M00967_44_000000000-A3K85_1_1101_15349_14079"); + read215.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGATGGCAAGTAGAATGTTAAATCCATCGGCTCAACCGGTGGCTGCGTTCTAAACTGCCGTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGGGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTTACTGACGCTGAGGGTCGAAAGCGGGGGGGGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(29); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); read215.setScores(scores); + ffastqReads.push_back(read215); + FastqRead read216; read216.setName("M00967_44_000000000-A3K85_1_1101_12064_14092"); + read216.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read216.setScores(scores); + ffastqReads.push_back(read216); + FastqRead read217; read217.setName("M00967_44_000000000-A3K85_1_1101_25584_14106"); + read217.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); read219.setScores(scores); + ffastqReads.push_back(read219); + FastqRead read220; read220.setName("M00967_44_000000000-A3K85_1_1101_23141_14276"); + read220.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGCGCCGCTGGAGTACGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGTGACTGACGTTGAGGCTCGAGAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read220.setScores(scores); + ffastqReads.push_back(read220); + FastqRead read221; read221.setName("M00967_44_000000000-A3K85_1_1101_3207_14327"); + read221.setSeq("TACGGAGGATGCGAGCGTTATACGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAAATGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACAGGAGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCACACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(29); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(25); read221.setScores(scores); + ffastqReads.push_back(read221); + FastqRead read222; read222.setName("M00967_44_000000000-A3K85_1_1101_19536_14328"); + read222.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read222.setScores(scores); + ffastqReads.push_back(read222); + FastqRead read223; read223.setName("M00967_44_000000000-A3K85_1_1101_28233_14330"); + read223.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read223.setScores(scores); + ffastqReads.push_back(read223); + FastqRead read224; read224.setName("M00967_44_000000000-A3K85_1_1101_4822_14340"); + read224.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read224.setScores(scores); + ffastqReads.push_back(read224); + FastqRead read225; read225.setName("M00967_44_000000000-A3K85_1_1101_9124_14409"); + read225.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); read225.setScores(scores); + ffastqReads.push_back(read225); + FastqRead read226; read226.setName("M00967_44_000000000-A3K85_1_1101_8204_14433"); + read226.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read226.setScores(scores); + ffastqReads.push_back(read226); + FastqRead read227; read227.setName("M00967_44_000000000-A3K85_1_1101_10476_14472"); + read227.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read227.setScores(scores); + ffastqReads.push_back(read227); + FastqRead read228; read228.setName("M00967_44_000000000-A3K85_1_1101_21646_14523"); + read228.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read228.setScores(scores); + ffastqReads.push_back(read228); + FastqRead read229; read229.setName("M00967_44_000000000-A3K85_1_1101_26579_14596"); + read229.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); read229.setScores(scores); + ffastqReads.push_back(read229); + FastqRead read230; read230.setName("M00967_44_000000000-A3K85_1_1101_24139_14675"); + read230.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read231.setScores(scores); + ffastqReads.push_back(read231); + FastqRead read232; read232.setName("M00967_44_000000000-A3K85_1_1101_10629_14705"); + read232.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read232.setScores(scores); + ffastqReads.push_back(read232); + FastqRead read233; read233.setName("M00967_44_000000000-A3K85_1_1101_8911_14708"); + read233.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGACAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); read234.setScores(scores); + ffastqReads.push_back(read234); + FastqRead read235; read235.setName("M00967_44_000000000-A3K85_1_1101_24070_14783"); + read235.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read235.setScores(scores); + ffastqReads.push_back(read235); + FastqRead read236; read236.setName("M00967_44_000000000-A3K85_1_1101_16563_14931"); + read236.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(13); read236.setScores(scores); + ffastqReads.push_back(read236); + FastqRead read237; read237.setName("M00967_44_000000000-A3K85_1_1101_3100_14955"); + read237.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); read237.setScores(scores); + ffastqReads.push_back(read237); + FastqRead read238; read238.setName("M00967_44_000000000-A3K85_1_1101_12234_14999"); + read238.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read238.setScores(scores); + ffastqReads.push_back(read238); + FastqRead read239; read239.setName("M00967_44_000000000-A3K85_1_1101_11356_15017"); + read239.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); 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scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(29); scores.push_back(17); scores.push_back(28); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read239.setScores(scores); + ffastqReads.push_back(read239); + FastqRead read240; read240.setName("M00967_44_000000000-A3K85_1_1101_7483_15103"); + read240.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read241.setScores(scores); + ffastqReads.push_back(read241); + FastqRead read242; read242.setName("M00967_44_000000000-A3K85_1_1101_21667_15192"); + read242.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read242.setScores(scores); + ffastqReads.push_back(read242); + FastqRead read243; read243.setName("M00967_44_000000000-A3K85_1_1101_24458_15240"); + read243.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGGAAGCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read244; read244.setName("M00967_44_000000000-A3K85_1_1101_17004_15262"); + read244.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); read244.setScores(scores); + ffastqReads.push_back(read244); + FastqRead read245; read245.setName("M00967_44_000000000-A3K85_1_1101_5744_15298"); + read245.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read245.setScores(scores); + ffastqReads.push_back(read245); + FastqRead read246; read246.setName("M00967_44_000000000-A3K85_1_1101_24114_15311"); + read246.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(26); read247.setScores(scores); + ffastqReads.push_back(read247); + FastqRead read248; read248.setName("M00967_44_000000000-A3K85_1_1101_27325_15400"); + read248.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGGGCAAACG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); read248.setScores(scores); + ffastqReads.push_back(read248); + FastqRead read249; read249.setName("M00967_44_000000000-A3K85_1_1101_2934_15422"); + read249.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGCAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(19); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); read249.setScores(scores); + ffastqReads.push_back(read249); + FastqRead read250; read250.setName("M00967_44_000000000-A3K85_1_1101_28863_15441"); + read250.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read250.setScores(scores); + ffastqReads.push_back(read250); + FastqRead read251; read251.setName("M00967_44_000000000-A3K85_1_1101_26816_15494"); + read251.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTATGGCAAGTCTGATGTGAAAACCCGGGGCTCAACCCCGGGACTGCATTGGAAACTGTCGGACTAGAGTGTCGGAGAGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read251.setScores(scores); + ffastqReads.push_back(read251); + FastqRead read252; read252.setName("M00967_44_000000000-A3K85_1_1101_5528_15529"); + read252.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCTTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read252.setScores(scores); + ffastqReads.push_back(read252); + FastqRead read253; read253.setName("M00967_44_000000000-A3K85_1_1101_26005_15566"); + read253.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); read254.setScores(scores); + ffastqReads.push_back(read254); + FastqRead read255; read255.setName("M00967_44_000000000-A3K85_1_1101_10355_15659"); + read255.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGGTGTCAAAACTACCGGCTCAACCGATAGTCGCACTCAAAACTGCAGCTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGGGAAATGCGGAGATATTAGGAGGAACACCAGGGGCGAAGGCGGCCTGCTGGGCTTTTACTGACGCTGAGGCTCGAAAGGGTGGGGGGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(14); read255.setScores(scores); + ffastqReads.push_back(read255); + FastqRead read256; read256.setName("M00967_44_000000000-A3K85_1_1101_23696_15665"); + read256.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); read256.setScores(scores); + ffastqReads.push_back(read256); + FastqRead read257; read257.setName("M00967_44_000000000-A3K85_1_1101_25630_15681"); + read257.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGTGCAGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTTGAACTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read257.setScores(scores); + ffastqReads.push_back(read257); + FastqRead read258; read258.setName("M00967_44_000000000-A3K85_1_1101_26797_15691"); + read258.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read258.setScores(scores); + ffastqReads.push_back(read258); + FastqRead read259; read259.setName("M00967_44_000000000-A3K85_1_1101_7537_15694"); + read259.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read261.setScores(scores); + ffastqReads.push_back(read261); + FastqRead read262; read262.setName("M00967_44_000000000-A3K85_1_1101_6733_15824"); + read262.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read262.setScores(scores); + ffastqReads.push_back(read262); + FastqRead read263; read263.setName("M00967_44_000000000-A3K85_1_1101_6503_15828"); + read263.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGTGTAAAGGGAGCGTAGACGGCCAAGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGCGACTGACGTTGAGGCTCGAAAGCGTGGGGGGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(12); read263.setScores(scores); + ffastqReads.push_back(read263); + FastqRead read264; read264.setName("M00967_44_000000000-A3K85_1_1101_8781_15872"); + read264.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read264.setScores(scores); + ffastqReads.push_back(read264); + FastqRead read265; read265.setName("M00967_44_000000000-A3K85_1_1101_7235_15876"); + read265.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read265.setScores(scores); + ffastqReads.push_back(read265); + FastqRead read266; read266.setName("M00967_44_000000000-A3K85_1_1101_15109_15953"); + read266.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read266.setScores(scores); + ffastqReads.push_back(read266); + FastqRead read267; read267.setName("M00967_44_000000000-A3K85_1_1101_6956_15961"); + read267.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read267.setScores(scores); + ffastqReads.push_back(read267); + FastqRead read268; read268.setName("M00967_44_000000000-A3K85_1_1101_11845_15966"); + read268.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read268.setScores(scores); + ffastqReads.push_back(read268); + FastqRead read269; read269.setName("M00967_44_000000000-A3K85_1_1101_12012_15973"); + read269.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read269.setScores(scores); + ffastqReads.push_back(read269); + FastqRead read270; read270.setName("M00967_44_000000000-A3K85_1_1101_15236_15983"); + read270.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(12); read270.setScores(scores); + ffastqReads.push_back(read270); + FastqRead read271; read271.setName("M00967_44_000000000-A3K85_1_1101_8423_15998"); + read271.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read271.setScores(scores); + ffastqReads.push_back(read271); + FastqRead read272; read272.setName("M00967_44_000000000-A3K85_1_1101_16605_16023"); + read272.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(12); read273.setScores(scores); + ffastqReads.push_back(read273); + FastqRead read274; read274.setName("M00967_44_000000000-A3K85_1_1101_25204_16074"); + read274.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read274.setScores(scores); + ffastqReads.push_back(read274); + FastqRead read275; read275.setName("M00967_44_000000000-A3K85_1_1101_3254_16111"); + read275.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(17); 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scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(33); read275.setScores(scores); + ffastqReads.push_back(read275); + FastqRead read276; read276.setName("M00967_44_000000000-A3K85_1_1101_10460_16118"); + read276.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read276.setScores(scores); + ffastqReads.push_back(read276); + FastqRead read277; read277.setName("M00967_44_000000000-A3K85_1_1101_9962_16123"); + read277.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCAGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read277.setScores(scores); + ffastqReads.push_back(read277); + FastqRead read278; read278.setName("M00967_44_000000000-A3K85_1_1101_18435_16146"); + read278.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read278.setScores(scores); + ffastqReads.push_back(read278); + FastqRead read279; read279.setName("M00967_44_000000000-A3K85_1_1101_25806_16160"); + read279.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read279.setScores(scores); + ffastqReads.push_back(read279); + FastqRead read280; read280.setName("M00967_44_000000000-A3K85_1_1101_20623_16187"); + read280.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(18); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(27); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(29); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(15); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(28); scores.push_back(12); read280.setScores(scores); + ffastqReads.push_back(read280); + FastqRead read281; read281.setName("M00967_44_000000000-A3K85_1_1101_28780_16228"); + read281.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGCGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(33); read281.setScores(scores); + ffastqReads.push_back(read281); + FastqRead read282; read282.setName("M00967_44_000000000-A3K85_1_1101_6585_16234"); + read282.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read283.setScores(scores); + ffastqReads.push_back(read283); + FastqRead read284; read284.setName("M00967_44_000000000-A3K85_1_1101_12787_16334"); + read284.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); read284.setScores(scores); + ffastqReads.push_back(read284); + FastqRead read285; read285.setName("M00967_44_000000000-A3K85_1_1101_22868_16341"); + read285.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read286; read286.setName("M00967_44_000000000-A3K85_1_1101_23951_16342"); + read286.setSeq("TACGTAGATGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTAATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATTACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(26); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read286.setScores(scores); + ffastqReads.push_back(read286); + FastqRead read287; read287.setName("M00967_44_000000000-A3K85_1_1101_22386_16363"); + read287.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAATACAAGTCGGAAGTGAAATACCCGGGCTTAACCTGGGAACTGCTTTGGAAACTGTATGGCTGGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); read287.setScores(scores); + ffastqReads.push_back(read287); + FastqRead read288; read288.setName("M00967_44_000000000-A3K85_1_1101_16040_16384"); + read288.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read289.setScores(scores); + ffastqReads.push_back(read289); + FastqRead read290; read290.setName("M00967_44_000000000-A3K85_1_1101_5293_16469"); + read290.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read290.setScores(scores); + ffastqReads.push_back(read290); + FastqRead read291; read291.setName("M00967_44_000000000-A3K85_1_1101_8861_16491"); + read291.setSeq("TACGTAGGGGGCGAGCGTTGTCCGGAATGACTGGGCGTAAAGGGAGTGTAGGCGGCCTTTTAAGTTATGTGTGAAAGCCCACGGCTCAACTGTGGAATTGCACATAAAACTGGGAGGCTGGAGTGCAGGAGAGGTAAGCGGAATTTCCAGTGTAGCGGTGGAATGCGTAGATATTGGGAAGAACACCGGAGGCGAAGGCGGCTTACTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read291.setScores(scores); + ffastqReads.push_back(read291); + FastqRead read292; read292.setName("M00967_44_000000000-A3K85_1_1101_29591_16523"); + read292.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCAGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read292.setScores(scores); + ffastqReads.push_back(read292); + FastqRead read293; read293.setName("M00967_44_000000000-A3K85_1_1101_19910_16577"); + read293.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTGCTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read293.setScores(scores); + ffastqReads.push_back(read293); + FastqRead read294; read294.setName("M00967_44_000000000-A3K85_1_1101_26044_16626"); + read294.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read294.setScores(scores); + ffastqReads.push_back(read294); + FastqRead read295; read295.setName("M00967_44_000000000-A3K85_1_1101_19479_16638"); + read295.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read297.setScores(scores); + ffastqReads.push_back(read297); + FastqRead read298; read298.setName("M00967_44_000000000-A3K85_1_1101_11027_16755"); + read298.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(37); read298.setScores(scores); + ffastqReads.push_back(read298); + FastqRead read299; read299.setName("M00967_44_000000000-A3K85_1_1101_27243_16776"); + read299.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(25); scores.push_back(32); scores.push_back(31); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read299.setScores(scores); + ffastqReads.push_back(read299); + FastqRead read300; read300.setName("M00967_44_000000000-A3K85_1_1101_26588_16849"); + read300.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(13); read300.setScores(scores); + ffastqReads.push_back(read300); + FastqRead read301; read301.setName("M00967_44_000000000-A3K85_1_1101_22040_16880"); + read301.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read302.setScores(scores); + ffastqReads.push_back(read302); + FastqRead read303; read303.setName("M00967_44_000000000-A3K85_1_1101_13651_17005"); + read303.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAGTGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read303.setScores(scores); + ffastqReads.push_back(read303); + FastqRead read304; read304.setName("M00967_44_000000000-A3K85_1_1101_18490_17089"); + read304.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read304.setScores(scores); + ffastqReads.push_back(read304); + FastqRead read305; read305.setName("M00967_44_000000000-A3K85_1_1101_8765_17131"); + read305.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read305.setScores(scores); + ffastqReads.push_back(read305); + FastqRead read306; read306.setName("M00967_44_000000000-A3K85_1_1101_12271_17157"); + read306.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read306.setScores(scores); + ffastqReads.push_back(read306); + FastqRead read307; read307.setName("M00967_44_000000000-A3K85_1_1101_17533_17243"); + read307.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read307.setScores(scores); + ffastqReads.push_back(read307); + FastqRead read308; read308.setName("M00967_44_000000000-A3K85_1_1101_14162_17311"); + read308.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read308.setScores(scores); + ffastqReads.push_back(read308); + FastqRead read309; read309.setName("M00967_44_000000000-A3K85_1_1101_11784_17334"); + read309.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read309.setScores(scores); + ffastqReads.push_back(read309); + FastqRead read310; read310.setName("M00967_44_000000000-A3K85_1_1101_13297_17341"); + read310.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read310.setScores(scores); + ffastqReads.push_back(read310); + FastqRead read311; read311.setName("M00967_44_000000000-A3K85_1_1101_12366_17394"); + read311.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(33); read311.setScores(scores); + ffastqReads.push_back(read311); + FastqRead read312; read312.setName("M00967_44_000000000-A3K85_1_1101_17266_17526"); + read312.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCATGGCAAGCCAGAAGTGAAAACCCGGGGCTTAACCCCGTGGATTGCTTTTGGAACGGTTAGTTTGGAGAGCAGGAAGGGCAGGGGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCGGGAGGACCACCGGGGGCGAAGGCGGCCTGCTGGACCGTAACTGACACTGAGGCTCGAAAGCGGGGGTGTAGAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(17); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(29); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); read312.setScores(scores); + ffastqReads.push_back(read312); + FastqRead read313; read313.setName("M00967_44_000000000-A3K85_1_1101_16833_17613"); + read313.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read313.setScores(scores); + ffastqReads.push_back(read313); + FastqRead read314; read314.setName("M00967_44_000000000-A3K85_1_1101_8059_17679"); + read314.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read315.setScores(scores); + ffastqReads.push_back(read315); + FastqRead read316; read316.setName("M00967_44_000000000-A3K85_1_1101_28448_17772"); + read316.setSeq("TACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGAGTGTAGGCGGCTCATCAAGTTAGATGTGAAATCCCGCGGCTTAACCGCGGAACTGCATCTAAAACTGGTAAGCTGGAGTGCAGGAGAGGTGAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGACTCACTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read316.setScores(scores); + ffastqReads.push_back(read316); + FastqRead read317; read317.setName("M00967_44_000000000-A3K85_1_1101_4195_17781"); + read317.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read317.setScores(scores); + ffastqReads.push_back(read317); + FastqRead read318; read318.setName("M00967_44_000000000-A3K85_1_1101_8809_17795"); + read318.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read318.setScores(scores); + ffastqReads.push_back(read318); + FastqRead read319; read319.setName("M00967_44_000000000-A3K85_1_1101_22742_17801"); + read319.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read319.setScores(scores); + ffastqReads.push_back(read319); + FastqRead read320; read320.setName("M00967_44_000000000-A3K85_1_1101_17508_17806"); + read320.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read320.setScores(scores); + ffastqReads.push_back(read320); + FastqRead read321; read321.setName("M00967_44_000000000-A3K85_1_1101_26688_17811"); + read321.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read321.setScores(scores); + ffastqReads.push_back(read321); + FastqRead read322; read322.setName("M00967_44_000000000-A3K85_1_1101_20272_17884"); + read322.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); read322.setScores(scores); + ffastqReads.push_back(read322); + FastqRead read323; read323.setName("M00967_44_000000000-A3K85_1_1101_25367_17904"); + read323.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read323.setScores(scores); + ffastqReads.push_back(read323); + FastqRead read324; read324.setName("M00967_44_000000000-A3K85_1_1101_16116_17943"); + read324.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read325.setScores(scores); + ffastqReads.push_back(read325); + FastqRead read326; read326.setName("M00967_44_000000000-A3K85_1_1101_19443_17988"); + read326.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); read326.setScores(scores); + ffastqReads.push_back(read326); + FastqRead read327; read327.setName("M00967_44_000000000-A3K85_1_1101_5294_17989"); + read327.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read328; read328.setName("M00967_44_000000000-A3K85_1_1101_11671_18011"); + read328.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read328.setScores(scores); + ffastqReads.push_back(read328); + FastqRead read329; read329.setName("M00967_44_000000000-A3K85_1_1101_20386_18021"); + read329.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGGAGCGAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(13); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(12); read329.setScores(scores); + ffastqReads.push_back(read329); + FastqRead read330; read330.setName("M00967_44_000000000-A3K85_1_1101_19437_18037"); + read330.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCCTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read330.setScores(scores); + ffastqReads.push_back(read330); + FastqRead read331; read331.setName("M00967_44_000000000-A3K85_1_1101_5272_18084"); + read331.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGAATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); read331.setScores(scores); + ffastqReads.push_back(read331); + FastqRead read332; read332.setName("M00967_44_000000000-A3K85_1_1101_21786_18090"); + read332.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read332.setScores(scores); + ffastqReads.push_back(read332); + FastqRead read333; read333.setName("M00967_44_000000000-A3K85_1_1101_29391_18162"); + read333.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCCGCCGTTGAAACTGGGGTCCTAGAGTGGGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); read333.setScores(scores); + ffastqReads.push_back(read333); + FastqRead read334; read334.setName("M00967_44_000000000-A3K85_1_1101_10276_18194"); + read334.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read334.setScores(scores); + ffastqReads.push_back(read334); + FastqRead read335; read335.setName("M00967_44_000000000-A3K85_1_1101_26760_18265"); + read335.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read335.setScores(scores); + ffastqReads.push_back(read335); + FastqRead read336; read336.setName("M00967_44_000000000-A3K85_1_1101_21125_18338"); + read336.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAGCCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read336.setScores(scores); + ffastqReads.push_back(read336); + FastqRead read337; read337.setName("M00967_44_000000000-A3K85_1_1101_10126_18434"); + read337.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read339.setScores(scores); + ffastqReads.push_back(read339); + FastqRead read340; read340.setName("M00967_44_000000000-A3K85_1_1101_23298_18590"); + read340.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read340.setScores(scores); + ffastqReads.push_back(read340); + FastqRead read341; read341.setName("M00967_44_000000000-A3K85_1_1101_3907_18616"); + read341.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTGTTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACCAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(24); read341.setScores(scores); + ffastqReads.push_back(read341); + FastqRead read342; read342.setName("M00967_44_000000000-A3K85_1_1101_5769_18685"); + read342.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(38); 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scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(37); read342.setScores(scores); + ffastqReads.push_back(read342); + FastqRead read343; read343.setName("M00967_44_000000000-A3K85_1_1101_2760_18731"); + read343.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATGGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(28); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); read343.setScores(scores); + ffastqReads.push_back(read343); + FastqRead read344; read344.setName("M00967_44_000000000-A3K85_1_1101_4187_18740"); + read344.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(26); read344.setScores(scores); + ffastqReads.push_back(read344); + FastqRead read345; read345.setName("M00967_44_000000000-A3K85_1_1101_19123_18746"); + read345.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); read345.setScores(scores); + ffastqReads.push_back(read345); + FastqRead read346; read346.setName("M00967_44_000000000-A3K85_1_1101_4170_18746"); + read346.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(37); read346.setScores(scores); + ffastqReads.push_back(read346); + FastqRead read347; read347.setName("M00967_44_000000000-A3K85_1_1101_2510_18750"); + read347.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read347.setScores(scores); + ffastqReads.push_back(read347); + FastqRead read348; read348.setName("M00967_44_000000000-A3K85_1_1101_11126_18756"); + read348.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read348.setScores(scores); + ffastqReads.push_back(read348); + FastqRead read349; read349.setName("M00967_44_000000000-A3K85_1_1101_5112_18767"); + read349.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGGGCAAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(20); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); 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scores.push_back(35); scores.push_back(27); scores.push_back(35); scores.push_back(27); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(32); read349.setScores(scores); + ffastqReads.push_back(read349); + FastqRead read350; read350.setName("M00967_44_000000000-A3K85_1_1101_26182_18789"); + read350.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read351.setScores(scores); + ffastqReads.push_back(read351); + FastqRead read352; read352.setName("M00967_44_000000000-A3K85_1_1101_10915_18815"); + read352.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read352.setScores(scores); + ffastqReads.push_back(read352); + FastqRead read353; read353.setName("M00967_44_000000000-A3K85_1_1101_14957_18837"); + read353.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGGTCAAGTCAGAAGTGAAAGCCCAGGGCTCAACCTTGGGACTGCTTTTGAAACTGAGTAGATAGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read353.setScores(scores); + ffastqReads.push_back(read353); + FastqRead read354; read354.setName("M00967_44_000000000-A3K85_1_1101_8347_18936"); + read354.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGAAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(13); read354.setScores(scores); + ffastqReads.push_back(read354); + FastqRead read355; read355.setName("M00967_44_000000000-A3K85_1_1101_18719_19023"); + read355.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read355.setScores(scores); + ffastqReads.push_back(read355); + FastqRead read356; read356.setName("M00967_44_000000000-A3K85_1_1101_7178_19094"); + read356.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read356.setScores(scores); + ffastqReads.push_back(read356); + FastqRead read357; read357.setName("M00967_44_000000000-A3K85_1_1101_28419_19118"); + read357.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(13); read357.setScores(scores); + ffastqReads.push_back(read357); + FastqRead read358; read358.setName("M00967_44_000000000-A3K85_1_1101_5010_19129"); + read358.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGAGACAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGCCTGACTGGAGTGCTGGATAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAGTGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read358.setScores(scores); + ffastqReads.push_back(read358); + FastqRead read359; read359.setName("M00967_44_000000000-A3K85_1_1101_8397_19133"); + read359.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); read359.setScores(scores); + ffastqReads.push_back(read359); + FastqRead read360; read360.setName("M00967_44_000000000-A3K85_1_1101_24623_19139"); + read360.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGCGTGGCAAGTCAGATGTGAAAACCCGGGGCCCAACCCCGGGACTGCATTTGAAACTGCCATGCTGGAGTGCCGGAGAGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGGAGGCGGCTTGCTGGACGGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read360.setScores(scores); + ffastqReads.push_back(read360); + FastqRead read361; read361.setName("M00967_44_000000000-A3K85_1_1101_13034_19159"); + read361.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read361.setScores(scores); + ffastqReads.push_back(read361); + FastqRead read362; read362.setName("M00967_44_000000000-A3K85_1_1101_13398_19215"); + read362.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); read362.setScores(scores); + ffastqReads.push_back(read362); + FastqRead read363; read363.setName("M00967_44_000000000-A3K85_1_1101_15838_19237"); + read363.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(37); read364.setScores(scores); + ffastqReads.push_back(read364); + FastqRead read365; read365.setName("M00967_44_000000000-A3K85_1_1101_23158_19247"); + read365.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read365.setScores(scores); + ffastqReads.push_back(read365); + FastqRead read366; read366.setName("M00967_44_000000000-A3K85_1_1101_16618_19255"); + read366.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read367.setScores(scores); + ffastqReads.push_back(read367); + FastqRead read368; read368.setName("M00967_44_000000000-A3K85_1_1101_10512_19272"); + read368.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); read368.setScores(scores); + ffastqReads.push_back(read368); + FastqRead read369; read369.setName("M00967_44_000000000-A3K85_1_1101_23939_19272"); + read369.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTAGGCTCGAAAGCGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read369.setScores(scores); + ffastqReads.push_back(read369); + FastqRead read370; read370.setName("M00967_44_000000000-A3K85_1_1101_24582_19293"); + read370.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read370.setScores(scores); + ffastqReads.push_back(read370); + FastqRead read371; read371.setName("M00967_44_000000000-A3K85_1_1101_14238_19302"); + read371.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(13); read371.setScores(scores); + ffastqReads.push_back(read371); + FastqRead read372; read372.setName("M00967_44_000000000-A3K85_1_1101_19144_19309"); + read372.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGTTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read372.setScores(scores); + ffastqReads.push_back(read372); + FastqRead read373; read373.setName("M00967_44_000000000-A3K85_1_1101_8435_19315"); + read373.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read373.setScores(scores); + ffastqReads.push_back(read373); + FastqRead read374; read374.setName("M00967_44_000000000-A3K85_1_1101_4073_19319"); + read374.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read374.setScores(scores); + ffastqReads.push_back(read374); + FastqRead read375; read375.setName("M00967_44_000000000-A3K85_1_1101_20170_19329"); + read375.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read375.setScores(scores); + ffastqReads.push_back(read375); + FastqRead read376; read376.setName("M00967_44_000000000-A3K85_1_1101_10382_19337"); + read376.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read376.setScores(scores); + ffastqReads.push_back(read376); + FastqRead read377; read377.setName("M00967_44_000000000-A3K85_1_1101_29060_19370"); + read377.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAACGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read377.setScores(scores); + ffastqReads.push_back(read377); + FastqRead read378; read378.setName("M00967_44_000000000-A3K85_1_1101_4545_19395"); + read378.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCGACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read378.setScores(scores); + ffastqReads.push_back(read378); + FastqRead read379; read379.setName("M00967_44_000000000-A3K85_1_1101_20007_19543"); + read379.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCGATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTTGCTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(25); read379.setScores(scores); + ffastqReads.push_back(read379); + FastqRead read380; read380.setName("M00967_44_000000000-A3K85_1_1101_20485_19546"); + read380.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read381.setScores(scores); + ffastqReads.push_back(read381); + FastqRead read382; read382.setName("M00967_44_000000000-A3K85_1_1101_12602_19638"); + read382.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAGCCAAGTCAGCTGTGAAAACTACGGGCTTAACCTGTAGACTGCAGTTGAAACTGGCTTTCTTGAGTGAAGTAGAGGTTGGCGGAATTCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCGGTGGCGAAGGCGGCCAACTGGGCTTTAACTGACGCTGAGGCTCGAAAGTGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); read382.setScores(scores); + ffastqReads.push_back(read382); + FastqRead read383; read383.setName("M00967_44_000000000-A3K85_1_1101_10513_19662"); + read383.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read383.setScores(scores); + ffastqReads.push_back(read383); + FastqRead read384; read384.setName("M00967_44_000000000-A3K85_1_1101_16943_19676"); + read384.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGGTGTCAAAACTACCGGCTCAACCGATAGTCGCACTCAAAACTGCAGCTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGGAGATATTAGGAGGAACACCAGTGGCGAAGGGGGCCCGCTGGGCTTTTAATGACGCTGAGGGTCGAAAGTGTGGGGGGGAAAAAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); read384.setScores(scores); + ffastqReads.push_back(read384); + FastqRead read385; read385.setName("M00967_44_000000000-A3K85_1_1101_20318_19842"); + read385.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); read385.setScores(scores); + ffastqReads.push_back(read385); + FastqRead read386; read386.setName("M00967_44_000000000-A3K85_1_1101_12029_19867"); + read386.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read386.setScores(scores); + ffastqReads.push_back(read386); + FastqRead read387; read387.setName("M00967_44_000000000-A3K85_1_1101_3379_19867"); + read387.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCCGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATAATGCGCAGAACTCCGATTGCGAAGGCAGCCTACCTGCTCCCATCTGACGCTGAGGCCCGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); 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scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(29); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); read387.setScores(scores); + ffastqReads.push_back(read387); + FastqRead read388; read388.setName("M00967_44_000000000-A3K85_1_1101_3360_19875"); + read388.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read388.setScores(scores); + ffastqReads.push_back(read388); + FastqRead read389; read389.setName("M00967_44_000000000-A3K85_1_1101_12754_19895"); + read389.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read389.setScores(scores); + ffastqReads.push_back(read389); + FastqRead read390; read390.setName("M00967_44_000000000-A3K85_1_1101_17371_19921"); + read390.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); read390.setScores(scores); + ffastqReads.push_back(read390); + FastqRead read391; read391.setName("M00967_44_000000000-A3K85_1_1101_10924_19935"); + read391.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read391.setScores(scores); + ffastqReads.push_back(read391); + FastqRead read392; read392.setName("M00967_44_000000000-A3K85_1_1101_26720_19997"); + read392.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read395.setScores(scores); + ffastqReads.push_back(read395); + FastqRead read396; read396.setName("M00967_44_000000000-A3K85_1_1101_25470_20064"); + read396.setSeq("TACGGAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read396.setScores(scores); + ffastqReads.push_back(read396); + FastqRead read397; read397.setName("M00967_44_000000000-A3K85_1_1101_9672_20121"); + read397.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read397.setScores(scores); + ffastqReads.push_back(read397); + FastqRead read398; read398.setName("M00967_44_000000000-A3K85_1_1101_14425_20152"); + read398.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read398.setScores(scores); + ffastqReads.push_back(read398); + FastqRead read399; read399.setName("M00967_44_000000000-A3K85_1_1101_26483_20169"); + read399.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGGGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(19); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read399.setScores(scores); + ffastqReads.push_back(read399); + FastqRead read400; read400.setName("M00967_44_000000000-A3K85_1_1101_11677_20209"); + read400.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTATGGCAAGTCTGATGTGAAAACCCGGGGCTCAACCCCGGGACTGCATTGGAAACTGTCGGACTAGAGTGTCGGAGAGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read400.setScores(scores); + ffastqReads.push_back(read400); + FastqRead read401; read401.setName("M00967_44_000000000-A3K85_1_1101_17973_20278"); + read401.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGAGACAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGCCTGACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read401.setScores(scores); + ffastqReads.push_back(read401); + FastqRead read402; read402.setName("M00967_44_000000000-A3K85_1_1101_24757_20466"); + read402.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read402.setScores(scores); + ffastqReads.push_back(read402); + FastqRead read403; read403.setName("M00967_44_000000000-A3K85_1_1101_7647_20478"); + read403.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); read403.setScores(scores); + ffastqReads.push_back(read403); + FastqRead read404; read404.setName("M00967_44_000000000-A3K85_1_1101_8720_20525"); + read404.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read404.setScores(scores); + ffastqReads.push_back(read404); + FastqRead read405; read405.setName("M00967_44_000000000-A3K85_1_1101_18342_20529"); + read405.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read407.setScores(scores); + ffastqReads.push_back(read407); + FastqRead read408; read408.setName("M00967_44_000000000-A3K85_1_1101_22945_20720"); + read408.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGTGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read409.setScores(scores); + ffastqReads.push_back(read409); + FastqRead read410; read410.setName("M00967_44_000000000-A3K85_1_1101_23347_20806"); + read410.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTTAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); read410.setScores(scores); + ffastqReads.push_back(read410); + FastqRead read411; read411.setName("M00967_44_000000000-A3K85_1_1101_25225_20825"); + read411.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACCGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read411.setScores(scores); + ffastqReads.push_back(read411); + FastqRead read412; read412.setName("M00967_44_000000000-A3K85_1_1101_19794_20840"); + read412.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read412.setScores(scores); + ffastqReads.push_back(read412); + FastqRead read413; read413.setName("M00967_44_000000000-A3K85_1_1101_6876_20848"); + read413.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); read413.setScores(scores); + ffastqReads.push_back(read413); + FastqRead read414; read414.setName("M00967_44_000000000-A3K85_1_1101_4099_20862"); + read414.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGAAGATTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCGTCGGGCCGTTGAAACTGGTTGTCTTGAGTGAGCGAGAAGAATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCGCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAGCAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(29); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(16); scores.push_back(27); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(28); scores.push_back(35); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(27); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); read414.setScores(scores); + ffastqReads.push_back(read414); + FastqRead read415; read415.setName("M00967_44_000000000-A3K85_1_1101_6848_20865"); + read415.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAACCTGTATGCCTGGAGTGCAGGAGAGGAAAGTGGAATTCCTAGTGAAGCGGTGAAATGCGTAGTTATACGGAGGAACACCAGTGGCGAAGGAGGCTTACTGGACTGTACCTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read416.setScores(scores); + ffastqReads.push_back(read416); + FastqRead read417; read417.setName("M00967_44_000000000-A3K85_1_1101_4083_20883"); + read417.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGACCAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(38); 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scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(37); read417.setScores(scores); + ffastqReads.push_back(read417); + FastqRead read418; read418.setName("M00967_44_000000000-A3K85_1_1101_3392_20903"); + read418.setSeq("TACGTTGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGAGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(35); scores.push_back(37); 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scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); read418.setScores(scores); + ffastqReads.push_back(read418); + FastqRead read419; read419.setName("M00967_44_000000000-A3K85_1_1101_6875_21019"); + read419.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGAAAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(25); read419.setScores(scores); + ffastqReads.push_back(read419); + FastqRead read420; read420.setName("M00967_44_000000000-A3K85_1_1101_23496_21067"); + read420.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read420.setScores(scores); + ffastqReads.push_back(read420); + FastqRead read421; read421.setName("M00967_44_000000000-A3K85_1_1101_26855_21079"); + read421.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(12); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(12); read422.setScores(scores); + ffastqReads.push_back(read422); + FastqRead read423; read423.setName("M00967_44_000000000-A3K85_1_1101_21622_21171"); + read423.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read423.setScores(scores); + ffastqReads.push_back(read423); + FastqRead read424; read424.setName("M00967_44_000000000-A3K85_1_1101_11233_21240"); + read424.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read424.setScores(scores); + ffastqReads.push_back(read424); + FastqRead read425; read425.setName("M00967_44_000000000-A3K85_1_1101_4076_21257"); + read425.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGCGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read425.setScores(scores); + ffastqReads.push_back(read425); + FastqRead read426; read426.setName("M00967_44_000000000-A3K85_1_1101_27459_21314"); + read426.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read426.setScores(scores); + ffastqReads.push_back(read426); + FastqRead read427; read427.setName("M00967_44_000000000-A3K85_1_1101_14703_21367"); + read427.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCACGAAAGTGCGGGGATCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read427.setScores(scores); + ffastqReads.push_back(read427); + FastqRead read428; read428.setName("M00967_44_000000000-A3K85_1_1101_21189_21392"); + read428.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read429.setScores(scores); + ffastqReads.push_back(read429); + FastqRead read430; read430.setName("M00967_44_000000000-A3K85_1_1101_16238_21584"); + read430.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read430.setScores(scores); + ffastqReads.push_back(read430); + FastqRead read431; read431.setName("M00967_44_000000000-A3K85_1_1101_7115_21626"); + read431.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); read431.setScores(scores); + ffastqReads.push_back(read431); + FastqRead read432; read432.setName("M00967_44_000000000-A3K85_1_1101_24430_21666"); + read432.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read432.setScores(scores); + ffastqReads.push_back(read432); + FastqRead read433; read433.setName("M00967_44_000000000-A3K85_1_1101_11336_21709"); + read433.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGTCTGAAGTGAAAGCCCAGGGCTCAACCCTGGGACTGCTTTGGAAACTGTGGAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read433.setScores(scores); + ffastqReads.push_back(read433); + FastqRead read434; read434.setName("M00967_44_000000000-A3K85_1_1101_4254_21777"); + read434.setSeq("TACGGAGGATGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGTCAAGTCAGCGGTCAAATCCCGGGGCTCAACCCCGGCATGCCGTTGGAAATTGTGTCCCTGAGTGGTCGAAGAGGATGCGGGAACCGCTGTGGTGGCGGGGAAAGCCTTGAATTTACGCAAGAACACCAGTGGCGAGGGCGGCTACCTGGGCCCAAACTGACGCTGAGGACGAAACGCTGGGGTTGGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); 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scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(14); read434.setScores(scores); + ffastqReads.push_back(read434); + FastqRead read435; read435.setName("M00967_44_000000000-A3K85_1_1101_16791_21818"); + read435.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read435.setScores(scores); + ffastqReads.push_back(read435); + FastqRead read436; read436.setName("M00967_44_000000000-A3K85_1_1101_9642_21818"); + read436.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read436.setScores(scores); + ffastqReads.push_back(read436); + FastqRead read437; read437.setName("M00967_44_000000000-A3K85_1_1101_20197_21828"); + read437.setSeq("TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGCGAGAAAGTTGAATGTTAAATCTACCGGCTTAACTGGTAGCTGCGTTCAAAACTTCTTGTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGGAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); read437.setScores(scores); + ffastqReads.push_back(read437); + FastqRead read438; read438.setName("M00967_44_000000000-A3K85_1_1101_12609_21843"); + read438.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); read438.setScores(scores); + ffastqReads.push_back(read438); + FastqRead read439; read439.setName("M00967_44_000000000-A3K85_1_1101_15072_21900"); + read439.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read439.setScores(scores); + ffastqReads.push_back(read439); + FastqRead read440; read440.setName("M00967_44_000000000-A3K85_1_1101_16646_21944"); + read440.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read440.setScores(scores); + ffastqReads.push_back(read440); + FastqRead read441; read441.setName("M00967_44_000000000-A3K85_1_1101_25288_22008"); + read441.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read441.setScores(scores); + ffastqReads.push_back(read441); + FastqRead read442; read442.setName("M00967_44_000000000-A3K85_1_1101_6682_22039"); + read442.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); read442.setScores(scores); + ffastqReads.push_back(read442); + FastqRead read443; read443.setName("M00967_44_000000000-A3K85_1_1101_21986_22111"); + read443.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read443.setScores(scores); + ffastqReads.push_back(read443); + FastqRead read444; read444.setName("M00967_44_000000000-A3K85_1_1101_18056_22134"); + read444.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(17); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(36); 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scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); read444.setScores(scores); + ffastqReads.push_back(read444); + FastqRead read445; read445.setName("M00967_44_000000000-A3K85_1_1101_7468_22202"); + read445.setSeq("TACGGAGGATGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGGTGTCAAAACTACCGGCTCAACCGATAGTCGCACTCAAAACTGCAGCTCTTGAGTGAAGTAGAGGCAGGGGGGAATTCTAAGGGAGCGGGGAAAATCGGAAGAATTTGGGGGGAAAACCGTGGGGGAAGCGGGCCGCCTGGCTTTTAATTACCCCGGGGGCCCGAAGGGGTGGGGGGCAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); read445.setScores(scores); + ffastqReads.push_back(read445); + FastqRead read446; read446.setName("M00967_44_000000000-A3K85_1_1101_11667_22289"); + read446.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read446.setScores(scores); + ffastqReads.push_back(read446); + FastqRead read447; read447.setName("M00967_44_000000000-A3K85_1_1101_24319_22301"); + read447.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read447.setScores(scores); + ffastqReads.push_back(read447); + FastqRead read448; read448.setName("M00967_44_000000000-A3K85_1_1101_9711_22306"); + read448.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read448.setScores(scores); + ffastqReads.push_back(read448); + FastqRead read449; read449.setName("M00967_44_000000000-A3K85_1_1101_17288_22307"); + read449.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read449.setScores(scores); + ffastqReads.push_back(read449); + FastqRead read450; read450.setName("M00967_44_000000000-A3K85_1_1101_6536_22322"); + read450.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGTTGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGCGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(14); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(29); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(28); scores.push_back(16); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(33); read450.setScores(scores); + ffastqReads.push_back(read450); + FastqRead read451; read451.setName("M00967_44_000000000-A3K85_1_1101_21363_22339"); + read451.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGGAAGACAAGTCAGATGTGAAATCCCGCGGCTCAACCGCGGAACTGCATTTGAAACTGTTTTTCTTGAGTATCGGAGAGGTAATCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGATTACTGGACGACAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read451.setScores(scores); + ffastqReads.push_back(read451); + FastqRead read452; read452.setName("M00967_44_000000000-A3K85_1_1101_26774_22378"); + read452.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGTACGTAGGTGGCAACCTAAGCGCAGGGTTTAAGGCAATGGCTCAACCATTGTTCGCCCTGCGAACTGGGATGCTTGAGTGCAGGAGAGGAAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTTCTGGACTGAAACTGACACTGAGGTACGAAAGCGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); read452.setScores(scores); + ffastqReads.push_back(read452); + FastqRead read453; read453.setName("M00967_44_000000000-A3K85_1_1101_9624_22393"); + read453.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read453.setScores(scores); + ffastqReads.push_back(read453); + FastqRead read454; read454.setName("M00967_44_000000000-A3K85_1_1101_16702_22428"); + read454.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTTAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read454.setScores(scores); + ffastqReads.push_back(read454); + FastqRead read455; read455.setName("M00967_44_000000000-A3K85_1_1101_22846_22476"); + read455.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCTTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCATGAACTGCTTTTGAAACTGCAGAGCTTGAGTGGAGTAGAGGTAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTCTAACTGACGCTGAGGCACGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read455.setScores(scores); + ffastqReads.push_back(read455); + FastqRead read456; read456.setName("M00967_44_000000000-A3K85_1_1101_4865_22519"); + read456.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); read456.setScores(scores); + ffastqReads.push_back(read456); + FastqRead read457; read457.setName("M00967_44_000000000-A3K85_1_1101_22826_22575"); + read457.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read458.setScores(scores); + ffastqReads.push_back(read458); + FastqRead read459; read459.setName("M00967_44_000000000-A3K85_1_1101_26977_22609"); + read459.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(17); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(26); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); read459.setScores(scores); + ffastqReads.push_back(read459); + FastqRead read460; read460.setName("M00967_44_000000000-A3K85_1_1101_8292_22634"); + read460.setSeq("TACAGGGGATGCAAGTGTTATCCGGAATTATTGGGCGTAAAGCGTCTGCAGGTGGATAAGTAAGTCTTTTGTTAAATTTTCAGGCTTAACCTGAAGTCCGCAAAGGAAACTACTTATCTTGAGTATGGTAGAGGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGATATTGGAAAGAACACCAACAGCGCAGGCACTTTACTGGGCCATTACTGACACTCAGAGACGAAAGCTAGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(32); read460.setScores(scores); + ffastqReads.push_back(read460); + FastqRead read461; read461.setName("M00967_44_000000000-A3K85_1_1101_18065_22676"); + read461.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGTCGCAAGTCTGAAGTGAAAGCCCGTGGCTCAACCGCGGAACCGCTTTGGAAACTGCGAGGCTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACAGTGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(26); read461.setScores(scores); + ffastqReads.push_back(read461); + FastqRead read462; read462.setName("M00967_44_000000000-A3K85_1_1101_8616_22725"); + read462.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read462.setScores(scores); + ffastqReads.push_back(read462); + FastqRead read463; read463.setName("M00967_44_000000000-A3K85_1_1101_18079_22767"); + read463.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCAGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read463.setScores(scores); + ffastqReads.push_back(read463); + FastqRead read464; read464.setName("M00967_44_000000000-A3K85_1_1101_26559_22769"); + read464.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read464.setScores(scores); + ffastqReads.push_back(read464); + FastqRead read465; read465.setName("M00967_44_000000000-A3K85_1_1101_17572_22818"); + read465.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read465.setScores(scores); + ffastqReads.push_back(read465); + FastqRead read466; read466.setName("M00967_44_000000000-A3K85_1_1101_6116_22819"); + read466.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCTTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(29); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read466.setScores(scores); + ffastqReads.push_back(read466); + FastqRead read467; read467.setName("M00967_44_000000000-A3K85_1_1101_25549_22917"); + read467.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(37); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); read467.setScores(scores); + ffastqReads.push_back(read467); + FastqRead read468; read468.setName("M00967_44_000000000-A3K85_1_1101_7259_22951"); + read468.setSeq("TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGAGTAGGTGGCAGAGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read468.setScores(scores); + ffastqReads.push_back(read468); + FastqRead read469; read469.setName("M00967_44_000000000-A3K85_1_1101_7361_22954"); + read469.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(16); 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scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(37); read469.setScores(scores); + ffastqReads.push_back(read469); + FastqRead read470; read470.setName("M00967_44_000000000-A3K85_1_1101_10891_22975"); + read470.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); 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scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read472.setScores(scores); + ffastqReads.push_back(read472); + FastqRead read473; read473.setName("M00967_44_000000000-A3K85_1_1101_23837_23142"); + read473.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read473.setScores(scores); + ffastqReads.push_back(read473); + FastqRead read474; read474.setName("M00967_44_000000000-A3K85_1_1101_25372_23145"); + read474.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read474.setScores(scores); + ffastqReads.push_back(read474); + FastqRead read475; read475.setName("M00967_44_000000000-A3K85_1_1101_6336_23184"); + read475.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(27); scores.push_back(29); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); read475.setScores(scores); + ffastqReads.push_back(read475); + FastqRead read476; read476.setName("M00967_44_000000000-A3K85_1_1101_16115_23214"); + read476.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read476.setScores(scores); + ffastqReads.push_back(read476); + FastqRead read477; read477.setName("M00967_44_000000000-A3K85_1_1101_22296_23219"); + read477.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read477.setScores(scores); + ffastqReads.push_back(read477); + FastqRead read478; read478.setName("M00967_44_000000000-A3K85_1_1101_12263_23228"); + read478.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(14); read478.setScores(scores); + ffastqReads.push_back(read478); + FastqRead read479; read479.setName("M00967_44_000000000-A3K85_1_1101_21980_23287"); + read479.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read479.setScores(scores); + ffastqReads.push_back(read479); + FastqRead read480; read480.setName("M00967_44_000000000-A3K85_1_1101_12849_23367"); + read480.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); read480.setScores(scores); + ffastqReads.push_back(read480); + FastqRead read481; read481.setName("M00967_44_000000000-A3K85_1_1101_21289_23407"); + read481.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read481.setScores(scores); + ffastqReads.push_back(read481); + FastqRead read482; read482.setName("M00967_44_000000000-A3K85_1_1101_26776_23418"); + read482.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read482.setScores(scores); + ffastqReads.push_back(read482); + FastqRead read483; read483.setName("M00967_44_000000000-A3K85_1_1101_26779_23456"); + read483.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read484.setScores(scores); + ffastqReads.push_back(read484); + FastqRead read485; read485.setName("M00967_44_000000000-A3K85_1_1101_9314_23515"); + read485.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read485.setScores(scores); + ffastqReads.push_back(read485); + FastqRead read486; read486.setName("M00967_44_000000000-A3K85_1_1101_9463_23593"); + read486.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGATGCACGAAAGCGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read486.setScores(scores); + ffastqReads.push_back(read486); + FastqRead read487; read487.setName("M00967_44_000000000-A3K85_1_1101_20398_23666"); + read487.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); read487.setScores(scores); + ffastqReads.push_back(read487); + FastqRead read488; read488.setName("M00967_44_000000000-A3K85_1_1101_11486_23707"); + read488.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(37); read488.setScores(scores); + ffastqReads.push_back(read488); + FastqRead read489; read489.setName("M00967_44_000000000-A3K85_1_1101_21757_23772"); + read489.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read489.setScores(scores); + ffastqReads.push_back(read489); + FastqRead read490; read490.setName("M00967_44_000000000-A3K85_1_1101_25077_23774"); + read490.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read490.setScores(scores); + ffastqReads.push_back(read490); + FastqRead read491; read491.setName("M00967_44_000000000-A3K85_1_1101_20541_23813"); + read491.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read491.setScores(scores); + ffastqReads.push_back(read491); + FastqRead read492; read492.setName("M00967_44_000000000-A3K85_1_1101_10282_23861"); + read492.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read492.setScores(scores); + ffastqReads.push_back(read492); + FastqRead read493; read493.setName("M00967_44_000000000-A3K85_1_1101_11185_23899"); + read493.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read493.setScores(scores); + ffastqReads.push_back(read493); + FastqRead read494; read494.setName("M00967_44_000000000-A3K85_1_1101_8803_23916"); + read494.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACCG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(26); read494.setScores(scores); + ffastqReads.push_back(read494); + FastqRead read495; read495.setName("M00967_44_000000000-A3K85_1_1101_26359_23948"); + read495.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read495.setScores(scores); + ffastqReads.push_back(read495); + FastqRead read496; read496.setName("M00967_44_000000000-A3K85_1_1101_21189_24129"); + read496.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGCGTAAAGGGAGCGCAGGCGGCGTGGCAAGTCAGATGTGAAAACCTTCGGCCCAACCGGGGGACTGCATTTGAAACTGCCATGCTGGAGTGCCGGAGAGGCAAGTGGAATTCCTATTGTAGCGGTGAAATGCGTAGATATCTCGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGTCCGACTGACGCTGAGGCACGGAAGTGCGGGGAGCAAACA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(16); 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scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); read496.setScores(scores); + ffastqReads.push_back(read496); + FastqRead read497; read497.setName("M00967_44_000000000-A3K85_1_1101_17792_24133"); + read497.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read497.setScores(scores); + ffastqReads.push_back(read497); + FastqRead read498; read498.setName("M00967_44_000000000-A3K85_1_1101_12653_24163"); + read498.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read498.setScores(scores); + ffastqReads.push_back(read498); + FastqRead read499; read499.setName("M00967_44_000000000-A3K85_1_1101_5807_24212"); + read499.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read500.setScores(scores); + ffastqReads.push_back(read500); + FastqRead read501; read501.setName("M00967_44_000000000-A3K85_1_1101_15538_24267"); + read501.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read501.setScores(scores); + ffastqReads.push_back(read501); + FastqRead read502; read502.setName("M00967_44_000000000-A3K85_1_1101_22787_24309"); + read502.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read502.setScores(scores); + ffastqReads.push_back(read502); + FastqRead read503; read503.setName("M00967_44_000000000-A3K85_1_1101_18941_24333"); + read503.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read503.setScores(scores); + ffastqReads.push_back(read503); + FastqRead read504; read504.setName("M00967_44_000000000-A3K85_1_1101_25726_24382"); + read504.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGGAGTAGTGCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAAGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTAACTGACGCTGAGGTTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read504.setScores(scores); + ffastqReads.push_back(read504); + FastqRead read505; read505.setName("M00967_44_000000000-A3K85_1_1101_20330_24435"); + read505.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read505.setScores(scores); + ffastqReads.push_back(read505); + FastqRead read506; read506.setName("M00967_44_000000000-A3K85_1_1101_15568_24551"); + read506.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read506.setScores(scores); + ffastqReads.push_back(read506); + FastqRead read507; read507.setName("M00967_44_000000000-A3K85_1_1101_21342_24637"); + read507.setSeq("TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGCCGGGCTGACAAGTCAGATGTGAAATTCCGGGGCTCAACCCCGGACCTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGGGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(32); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(30); read507.setScores(scores); + ffastqReads.push_back(read507); + FastqRead read508; read508.setName("M00967_44_000000000-A3K85_1_1101_9308_24701"); + read508.setSeq("TACGTAGGGGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read508.setScores(scores); + ffastqReads.push_back(read508); + FastqRead read509; read509.setName("M00967_44_000000000-A3K85_1_1101_18612_24717"); + read509.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read509.setScores(scores); + ffastqReads.push_back(read509); + FastqRead read510; read510.setName("M00967_44_000000000-A3K85_1_1101_10385_24730"); + read510.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read510.setScores(scores); + ffastqReads.push_back(read510); + FastqRead read511; read511.setName("M00967_44_000000000-A3K85_1_1101_21604_24874"); + read511.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read511.setScores(scores); + ffastqReads.push_back(read511); + FastqRead read512; read512.setName("M00967_44_000000000-A3K85_1_1101_21717_24894"); + read512.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCAAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); 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scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(12); read513.setScores(scores); + ffastqReads.push_back(read513); + FastqRead read514; read514.setName("M00967_44_000000000-A3K85_1_1101_11885_24913"); + read514.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(37); read514.setScores(scores); + ffastqReads.push_back(read514); + FastqRead read515; read515.setName("M00967_44_000000000-A3K85_1_1101_8995_25063"); + read515.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGTGCGCAGACGGCTGGGCAAGCCTGATGTGAAAGGCGGGGGCGCAACCCTCGGACTGCGTTGGGAACTGTCCGGCTGGAGGGCCGGAGGGGTAAGGGGAATTCCTGGTGTAGCGGTGAAATGCGTAAAAATCAGGAGGAACACCGGTGGCGAAGGCGGCTGACTGGACGGAGCCTGACGTGGATGCTCGAAAGCGTGGGGAGCGAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); 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scores.push_back(12); scores.push_back(12); read515.setScores(scores); + ffastqReads.push_back(read515); + FastqRead read516; read516.setName("M00967_44_000000000-A3K85_1_1101_21889_25065"); + read516.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read516.setScores(scores); + ffastqReads.push_back(read516); + FastqRead read517; read517.setName("M00967_44_000000000-A3K85_1_1101_11795_25120"); + read517.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read517.setScores(scores); + ffastqReads.push_back(read517); + FastqRead read518; read518.setName("M00967_44_000000000-A3K85_1_1101_22305_25145"); + read518.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read518.setScores(scores); + ffastqReads.push_back(read518); + FastqRead read519; read519.setName("M00967_44_000000000-A3K85_1_1101_12668_25148"); + read519.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read519.setScores(scores); + ffastqReads.push_back(read519); + FastqRead read520; read520.setName("M00967_44_000000000-A3K85_1_1101_25138_25158"); + read520.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read520.setScores(scores); + ffastqReads.push_back(read520); + FastqRead read521; read521.setName("M00967_44_000000000-A3K85_1_1101_7504_25257"); + read521.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); read521.setScores(scores); + ffastqReads.push_back(read521); + FastqRead read522; read522.setName("M00967_44_000000000-A3K85_1_1101_18205_25260"); + read522.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read522.setScores(scores); + ffastqReads.push_back(read522); + FastqRead read523; read523.setName("M00967_44_000000000-A3K85_1_1101_9218_25286"); + read523.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(33); read523.setScores(scores); + ffastqReads.push_back(read523); + FastqRead read524; read524.setName("M00967_44_000000000-A3K85_1_1101_11547_25305"); + read524.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(33); scores.push_back(37); read524.setScores(scores); + ffastqReads.push_back(read524); + FastqRead read525; read525.setName("M00967_44_000000000-A3K85_1_1101_8524_25310"); + read525.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read526.setScores(scores); + ffastqReads.push_back(read526); + FastqRead read527; read527.setName("M00967_44_000000000-A3K85_1_1101_20774_25379"); + read527.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read527.setScores(scores); + ffastqReads.push_back(read527); + FastqRead read528; read528.setName("M00967_44_000000000-A3K85_1_1101_18472_25401"); + read528.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read528.setScores(scores); + ffastqReads.push_back(read528); + FastqRead read529; read529.setName("M00967_44_000000000-A3K85_1_1101_19848_25477"); + read529.setSeq("TACGGAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read529.setScores(scores); + ffastqReads.push_back(read529); + FastqRead read530; read530.setName("M00967_44_000000000-A3K85_1_1101_15867_25556"); + read530.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read530.setScores(scores); + ffastqReads.push_back(read530); + FastqRead read531; read531.setName("M00967_44_000000000-A3K85_1_1101_21874_25569"); + read531.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read531.setScores(scores); + ffastqReads.push_back(read531); + FastqRead read532; read532.setName("M00967_44_000000000-A3K85_1_1101_9102_25591"); + read532.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); read532.setScores(scores); + ffastqReads.push_back(read532); + FastqRead read533; read533.setName("M00967_44_000000000-A3K85_1_1101_22207_25609"); + read533.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read533.setScores(scores); + ffastqReads.push_back(read533); + FastqRead read534; read534.setName("M00967_44_000000000-A3K85_1_1101_15927_25631"); + read534.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read534.setScores(scores); + ffastqReads.push_back(read534); + FastqRead read535; read535.setName("M00967_44_000000000-A3K85_1_1101_23163_25633"); + read535.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read535.setScores(scores); + ffastqReads.push_back(read535); + FastqRead read536; read536.setName("M00967_44_000000000-A3K85_1_1101_10093_25778"); + read536.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read536.setScores(scores); + ffastqReads.push_back(read536); + FastqRead read537; read537.setName("M00967_44_000000000-A3K85_1_1101_23299_25955"); + read537.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); read537.setScores(scores); + ffastqReads.push_back(read537); + FastqRead read538; read538.setName("M00967_44_000000000-A3K85_1_1101_19016_25958"); + read538.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); read538.setScores(scores); + ffastqReads.push_back(read538); + FastqRead read539; read539.setName("M00967_44_000000000-A3K85_1_1101_22265_25979"); + read539.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(37); read539.setScores(scores); + ffastqReads.push_back(read539); + FastqRead read540; read540.setName("M00967_44_000000000-A3K85_1_1101_7972_25997"); + read540.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(37); read540.setScores(scores); + ffastqReads.push_back(read540); + FastqRead read541; read541.setName("M00967_44_000000000-A3K85_1_1101_14853_26038"); + read541.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read542.setScores(scores); + ffastqReads.push_back(read542); + FastqRead read543; read543.setName("M00967_44_000000000-A3K85_1_1101_17605_26085"); + read543.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGTACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read543.setScores(scores); + ffastqReads.push_back(read543); + FastqRead read544; read544.setName("M00967_44_000000000-A3K85_1_1101_8923_26225"); + read544.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read544.setScores(scores); + ffastqReads.push_back(read544); + FastqRead read545; read545.setName("M00967_44_000000000-A3K85_1_1101_22500_26237"); + read545.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read545.setScores(scores); + ffastqReads.push_back(read545); + FastqRead read546; read546.setName("M00967_44_000000000-A3K85_1_1101_16708_26253"); + read546.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read546.setScores(scores); + ffastqReads.push_back(read546); + FastqRead read547; read547.setName("M00967_44_000000000-A3K85_1_1101_19255_26278"); + read547.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read547.setScores(scores); + ffastqReads.push_back(read547); + FastqRead read548; read548.setName("M00967_44_000000000-A3K85_1_1101_8682_26329"); + read548.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(17); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read548.setScores(scores); + ffastqReads.push_back(read548); + FastqRead read549; read549.setName("M00967_44_000000000-A3K85_1_1101_17570_26347"); + read549.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTAATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); read549.setScores(scores); + ffastqReads.push_back(read549); + FastqRead read550; read550.setName("M00967_44_000000000-A3K85_1_1101_17589_26350"); + read550.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTAATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); 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scores.push_back(12); scores.push_back(27); scores.push_back(30); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); read550.setScores(scores); + ffastqReads.push_back(read550); + FastqRead read551; read551.setName("M00967_44_000000000-A3K85_1_1101_20406_26374"); + read551.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(29); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(24); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); read551.setScores(scores); + ffastqReads.push_back(read551); + FastqRead read552; read552.setName("M00967_44_000000000-A3K85_1_1101_22581_26381"); + read552.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read552.setScores(scores); + ffastqReads.push_back(read552); + FastqRead read553; read553.setName("M00967_44_000000000-A3K85_1_1101_13879_26453"); + read553.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGAGTAGGTGGCAGAGCAAGTCTGATGTGAAAACCCAAAGCTCAACTCTGGGAATGCTTTAGAAACTGCCCAGCTAGAGTGCAGGAGAGGCAAGTGGAATTCTTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(14); scores.push_back(18); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); read553.setScores(scores); + ffastqReads.push_back(read553); + FastqRead read554; read554.setName("M00967_44_000000000-A3K85_1_1101_10295_26460"); + read554.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(13); read555.setScores(scores); + ffastqReads.push_back(read555); + FastqRead read556; read556.setName("M00967_44_000000000-A3K85_1_1101_9342_26543"); + read556.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read556.setScores(scores); + ffastqReads.push_back(read556); + FastqRead read557; read557.setName("M00967_44_000000000-A3K85_1_1101_16675_26558"); + read557.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(13); read557.setScores(scores); + ffastqReads.push_back(read557); + FastqRead read558; read558.setName("M00967_44_000000000-A3K85_1_1101_8837_26620"); + read558.setSeq("TACGGAGGATTCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGATAAGTTAGAGGTGAAATCCCGGGGCTCAACTCCGGCACTGCCTATGATACTGTCGGGCTAGAGTTTAGTTGAGGTAGGTGGAATGTGTGGTGTAGCGGTGAAATGCATAGAGATCATACAGAATACCGATTGCGAAGGCAGGTTACCACACAAGGATTGACGTTGAGGGACGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(27); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); read558.setScores(scores); + ffastqReads.push_back(read558); + FastqRead read559; read559.setName("M00967_44_000000000-A3K85_1_1101_22910_26690"); + read559.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read559.setScores(scores); + ffastqReads.push_back(read559); + FastqRead read560; read560.setName("M00967_44_000000000-A3K85_1_1101_13859_26741"); + read560.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); read560.setScores(scores); + ffastqReads.push_back(read560); + FastqRead read561; read561.setName("M00967_44_000000000-A3K85_1_1101_10265_26758"); + read561.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); read562.setScores(scores); + ffastqReads.push_back(read562); + FastqRead read563; read563.setName("M00967_44_000000000-A3K85_1_1101_22404_26859"); + read563.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGGGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGGAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); read563.setScores(scores); + ffastqReads.push_back(read563); + FastqRead read564; read564.setName("M00967_44_000000000-A3K85_1_1101_11257_26889"); + read564.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(25); read564.setScores(scores); + ffastqReads.push_back(read564); + FastqRead read565; read565.setName("M00967_44_000000000-A3K85_1_1101_17949_26920"); + read565.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read565.setScores(scores); + ffastqReads.push_back(read565); + FastqRead read566; read566.setName("M00967_44_000000000-A3K85_1_1101_14506_26923"); + read566.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTAATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATTACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read566.setScores(scores); + ffastqReads.push_back(read566); + FastqRead read567; read567.setName("M00967_44_000000000-A3K85_1_1101_11808_26943"); + read567.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read567.setScores(scores); + ffastqReads.push_back(read567); + FastqRead read568; read568.setName("M00967_44_000000000-A3K85_1_1101_9292_26962"); + read568.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTTTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read568.setScores(scores); + ffastqReads.push_back(read568); + FastqRead read569; read569.setName("M00967_44_000000000-A3K85_1_1101_22847_27011"); + read569.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(36); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read569.setScores(scores); + ffastqReads.push_back(read569); + FastqRead read570; read570.setName("M00967_44_000000000-A3K85_1_1101_12808_27149"); + read570.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read570.setScores(scores); + ffastqReads.push_back(read570); + FastqRead read571; read571.setName("M00967_44_000000000-A3K85_1_1101_21606_27182"); + read571.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read571.setScores(scores); + ffastqReads.push_back(read571); + FastqRead read572; read572.setName("M00967_44_000000000-A3K85_1_1101_21515_27198"); + read572.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read572.setScores(scores); + ffastqReads.push_back(read572); + FastqRead read573; read573.setName("M00967_44_000000000-A3K85_1_1101_11124_27325"); + read573.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACAGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); read573.setScores(scores); + ffastqReads.push_back(read573); + FastqRead read574; read574.setName("M00967_44_000000000-A3K85_1_1101_12290_27349"); + read574.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read574.setScores(scores); + ffastqReads.push_back(read574); + FastqRead read575; read575.setName("M00967_44_000000000-A3K85_1_1101_13601_27512"); + read575.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCATGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read575.setScores(scores); + ffastqReads.push_back(read575); + FastqRead read576; read576.setName("M00967_44_000000000-A3K85_1_1101_11009_27586"); + read576.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); read576.setScores(scores); + ffastqReads.push_back(read576); + FastqRead read577; read577.setName("M00967_44_000000000-A3K85_1_1101_19039_27906"); + read577.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTCCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); 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scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read577.setScores(scores); + ffastqReads.push_back(read577); + FastqRead read578; read578.setName("M00967_44_000000000-A3K85_1_1101_21462_27924"); + read578.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read578.setScores(scores); + ffastqReads.push_back(read578); + FastqRead read579; read579.setName("M00967_44_000000000-A3K85_1_1101_15578_27984"); + read579.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCGCAGGCTCAACCTGCGAACTGCATTTGAAACTGTTTCCCTTGAGTATCGGAGAGGTCATCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGACAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read579.setScores(scores); + ffastqReads.push_back(read579); + FastqRead read580; read580.setName("M00967_44_000000000-A3K85_1_1101_19320_28114"); + read580.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATGGCGAAGGCAGCTCACTGGACGGCAACTGACACTGATGCCCGAAAGTGGGGGAATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(13); read580.setScores(scores); + ffastqReads.push_back(read580); + FastqRead read581; read581.setName("M00967_44_000000000-A3K85_1_1101_11162_28308"); + read581.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGGACGCAAGCCAGATGTGAAAAACACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTCGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCCGCTGGACAGCAACTGACGCTGAGGGGCGAACGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(29); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(14); 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scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(16); scores.push_back(14); scores.push_back(15); scores.push_back(30); scores.push_back(27); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(27); scores.push_back(37); scores.push_back(28); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(27); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(28); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(27); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read581.setScores(scores); + ffastqReads.push_back(read581); + FastqRead read582; read582.setName("M00967_44_000000000-A3K85_1_1101_19555_28367"); + read582.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read582.setScores(scores); + ffastqReads.push_back(read582); + FastqRead read583; read583.setName("M00967_44_000000000-A3K85_1_1101_19486_28401"); + read583.setSeq("TACGTATGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCAGGGCAAGCCTGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTGGGAACTGCCCCGCTCGAGTGCCGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGGTGTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); read583.setScores(scores); + ffastqReads.push_back(read583); + FastqRead read584; read584.setName("M00967_44_000000000-A3K85_1_1102_15835_1461"); + read584.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); read584.setScores(scores); + ffastqReads.push_back(read584); + FastqRead read585; read585.setName("M00967_44_000000000-A3K85_1_1102_17341_1618"); + read585.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(13); read585.setScores(scores); + ffastqReads.push_back(read585); + FastqRead read586; read586.setName("M00967_44_000000000-A3K85_1_1102_15830_1662"); + read586.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read586.setScores(scores); + ffastqReads.push_back(read586); + FastqRead read587; read587.setName("M00967_44_000000000-A3K85_1_1102_17208_1982"); + read587.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(17); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(17); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(26); scores.push_back(29); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(24); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); read587.setScores(scores); + ffastqReads.push_back(read587); + FastqRead read588; read588.setName("M00967_44_000000000-A3K85_1_1102_14995_2251"); + read588.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATTCCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(37); read588.setScores(scores); + ffastqReads.push_back(read588); + FastqRead read589; read589.setName("M00967_44_000000000-A3K85_1_1102_11948_2260"); + read589.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAGAGCAAGTCGACTGTGAAATCTATGGGCTTAACCCATAGCTGCGATCGAAACTGTTCATCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAAATATTAGGAGGAAAACCAGTGGCGAAGGCGGCCTGCTGGGCTTTAACTGACGCTGAGGCTCGAAAGCGGGGGTAGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); read589.setScores(scores); + ffastqReads.push_back(read589); + FastqRead read590; read590.setName("M00967_44_000000000-A3K85_1_1102_14989_2272"); + read590.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATTCCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read591.setScores(scores); + ffastqReads.push_back(read591); + FastqRead read592; read592.setName("M00967_44_000000000-A3K85_1_1102_15019_2584"); + read592.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read592.setScores(scores); + ffastqReads.push_back(read592); + FastqRead read593; read593.setName("M00967_44_000000000-A3K85_1_1102_15796_2608"); + read593.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read593.setScores(scores); + ffastqReads.push_back(read593); + FastqRead read594; read594.setName("M00967_44_000000000-A3K85_1_1102_12309_2625"); + read594.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read594.setScores(scores); + ffastqReads.push_back(read594); + FastqRead read595; read595.setName("M00967_44_000000000-A3K85_1_1102_13413_2661"); + read595.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(18); scores.push_back(32); scores.push_back(30); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read595.setScores(scores); + ffastqReads.push_back(read595); + FastqRead read596; read596.setName("M00967_44_000000000-A3K85_1_1102_16937_2684"); + read596.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGGCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(19); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read596.setScores(scores); + ffastqReads.push_back(read596); + FastqRead read597; read597.setName("M00967_44_000000000-A3K85_1_1102_17924_2788"); + read597.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCCGCTGGGCGATGACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read597.setScores(scores); + ffastqReads.push_back(read597); + FastqRead read598; read598.setName("M00967_44_000000000-A3K85_1_1102_13140_2853"); + read598.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(27); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read598.setScores(scores); + ffastqReads.push_back(read598); + FastqRead read599; read599.setName("M00967_44_000000000-A3K85_1_1102_19576_3038"); + read599.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(19); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(27); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read599.setScores(scores); + ffastqReads.push_back(read599); + FastqRead read600; read600.setName("M00967_44_000000000-A3K85_1_1102_20423_3046"); + read600.setSeq("TACGTAGGGAGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGATGTTTAAACTATCGGCTCAACCGGTAATTGCAACCAAAACTGCAACTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGGAGAAATTAGGAGGAAAACCAGCGGCGGAGGCGGCCTGCTTGGCTTTAACTGACGCTGAGGCTCGAAAGGGTGGGGGGCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(18); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(15); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); read600.setScores(scores); + ffastqReads.push_back(read600); + FastqRead read601; read601.setName("M00967_44_000000000-A3K85_1_1102_10386_3065"); + read601.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); read601.setScores(scores); + ffastqReads.push_back(read601); + FastqRead read602; read602.setName("M00967_44_000000000-A3K85_1_1102_12737_3153"); + read602.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read602.setScores(scores); + ffastqReads.push_back(read602); + FastqRead read603; read603.setName("M00967_44_000000000-A3K85_1_1102_12269_3159"); + read603.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(17); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read604.setScores(scores); + ffastqReads.push_back(read604); + FastqRead read605; read605.setName("M00967_44_000000000-A3K85_1_1102_15277_3213"); + read605.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGGGTGCGTAGGCGGCGCAGTTAGTCAGAAGTGAAATATCGGGGCTTAACCCCGGGGCTGCTTCTGATACTGCTGTGCTCGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGACTTACTGGACTGTAACTGACGCTGAGGCACGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read605.setScores(scores); + ffastqReads.push_back(read605); + FastqRead read606; read606.setName("M00967_44_000000000-A3K85_1_1102_18014_3238"); + read606.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); 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scores.push_back(32); scores.push_back(37); read606.setScores(scores); + ffastqReads.push_back(read606); + FastqRead read607; read607.setName("M00967_44_000000000-A3K85_1_1102_12179_3242"); + read607.setSeq("TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTGCGTAGGTGGTTTGACAAGTTGGTAGCGTAACTCCGGGGCTCAACCTCGGCACTACTACCAAAACTGTTGGACTTGAGTGCAGGAGGGGCAAATGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGATTTGCTGGACTGTAACTGACACTGAGGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read607.setScores(scores); + ffastqReads.push_back(read607); + FastqRead read608; read608.setName("M00967_44_000000000-A3K85_1_1102_10712_3282"); + read608.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read608.setScores(scores); + ffastqReads.push_back(read608); + FastqRead read609; read609.setName("M00967_44_000000000-A3K85_1_1102_14844_3406"); + read609.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read609.setScores(scores); + ffastqReads.push_back(read609); + FastqRead read610; read610.setName("M00967_44_000000000-A3K85_1_1102_12068_3452"); + read610.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(27); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(25); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); read610.setScores(scores); + ffastqReads.push_back(read610); + FastqRead read611; read611.setName("M00967_44_000000000-A3K85_1_1102_13989_3505"); + read611.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGCCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCCCGAAAGGCCGGGGACCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(16); scores.push_back(38); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(27); scores.push_back(16); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); read611.setScores(scores); + ffastqReads.push_back(read611); + FastqRead read612; read612.setName("M00967_44_000000000-A3K85_1_1102_16208_3522"); + read612.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGTACGGCAAGTCTGATGTGAAAGCCCAGGGCTCAACCCTGGAACTGCATTGGAAACTGCCGGACTAGAGTGTCGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(33); scores.push_back(15); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read612.setScores(scores); + ffastqReads.push_back(read612); + FastqRead read613; read613.setName("M00967_44_000000000-A3K85_1_1102_22090_3602"); + read613.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); read613.setScores(scores); + ffastqReads.push_back(read613); + FastqRead read614; read614.setName("M00967_44_000000000-A3K85_1_1102_12641_3607"); + read614.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read614.setScores(scores); + ffastqReads.push_back(read614); + FastqRead read615; read615.setName("M00967_44_000000000-A3K85_1_1102_20798_3675"); + read615.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read615.setScores(scores); + ffastqReads.push_back(read615); + FastqRead read616; read616.setName("M00967_44_000000000-A3K85_1_1102_18863_3783"); + read616.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read618.setScores(scores); + ffastqReads.push_back(read618); + FastqRead read619; read619.setName("M00967_44_000000000-A3K85_1_1102_15766_4244"); + read619.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read619.setScores(scores); + ffastqReads.push_back(read619); + FastqRead read620; read620.setName("M00967_44_000000000-A3K85_1_1102_8055_4329"); + read620.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read620.setScores(scores); + ffastqReads.push_back(read620); + FastqRead read621; read621.setName("M00967_44_000000000-A3K85_1_1102_15291_4423"); + read621.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read621.setScores(scores); + ffastqReads.push_back(read621); + FastqRead read622; read622.setName("M00967_44_000000000-A3K85_1_1102_18037_4545"); + read622.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGATTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read622.setScores(scores); + ffastqReads.push_back(read622); + FastqRead read623; read623.setName("M00967_44_000000000-A3K85_1_1102_21052_4578"); + read623.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); read623.setScores(scores); + ffastqReads.push_back(read623); + FastqRead read624; read624.setName("M00967_44_000000000-A3K85_1_1102_12406_4593"); + read624.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(28); scores.push_back(29); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(29); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); read624.setScores(scores); + ffastqReads.push_back(read624); + FastqRead read625; read625.setName("M00967_44_000000000-A3K85_1_1102_23086_4898"); + read625.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGATTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read625.setScores(scores); + ffastqReads.push_back(read625); + FastqRead read626; read626.setName("M00967_44_000000000-A3K85_1_1102_17056_4962"); + read626.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read626.setScores(scores); + ffastqReads.push_back(read626); + FastqRead read627; read627.setName("M00967_44_000000000-A3K85_1_1102_11016_4996"); + read627.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read627.setScores(scores); + ffastqReads.push_back(read627); + FastqRead read628; read628.setName("M00967_44_000000000-A3K85_1_1102_20868_5029"); + read628.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCAGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read628.setScores(scores); + ffastqReads.push_back(read628); + FastqRead read629; read629.setName("M00967_44_000000000-A3K85_1_1102_13273_5076"); + read629.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCAGTGCAAGTCTGGAGTGAAAGCCCGGGGCCCAACCCCGGAACTGCTCTGGAAACTGTGCGGCTAGAGTACTGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read629.setScores(scores); + ffastqReads.push_back(read629); + FastqRead read630; read630.setName("M00967_44_000000000-A3K85_1_1102_11788_5082"); + read630.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read630.setScores(scores); + ffastqReads.push_back(read630); + FastqRead read631; read631.setName("M00967_44_000000000-A3K85_1_1102_9158_5092"); + read631.setSeq("TACGTATGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCGGGGCAAGCCTGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTGGGAACTGCCCTGCTGGAGTGCCGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGGTGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read631.setScores(scores); + ffastqReads.push_back(read631); + FastqRead read632; read632.setName("M00967_44_000000000-A3K85_1_1102_12218_5161"); + read632.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATGGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read633.setScores(scores); + ffastqReads.push_back(read633); + FastqRead read634; read634.setName("M00967_44_000000000-A3K85_1_1102_10741_5416"); + read634.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read634.setScores(scores); + ffastqReads.push_back(read634); + FastqRead read635; read635.setName("M00967_44_000000000-A3K85_1_1102_10062_5454"); + read635.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read635.setScores(scores); + ffastqReads.push_back(read635); + FastqRead read636; read636.setName("M00967_44_000000000-A3K85_1_1102_22132_5527"); + read636.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read636.setScores(scores); + ffastqReads.push_back(read636); + FastqRead read637; read637.setName("M00967_44_000000000-A3K85_1_1102_17733_5590"); + read637.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTGACTGGAGTGCAGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read637.setScores(scores); + ffastqReads.push_back(read637); + FastqRead read638; read638.setName("M00967_44_000000000-A3K85_1_1102_16539_5621"); + read638.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read638.setScores(scores); + ffastqReads.push_back(read638); + FastqRead read639; read639.setName("M00967_44_000000000-A3K85_1_1102_15276_5626"); + read639.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read639.setScores(scores); + ffastqReads.push_back(read639); + FastqRead read640; read640.setName("M00967_44_000000000-A3K85_1_1102_13711_5675"); + read640.setSeq("TACGGAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read640.setScores(scores); + ffastqReads.push_back(read640); + FastqRead read641; read641.setName("M00967_44_000000000-A3K85_1_1102_22231_5761"); + read641.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read641.setScores(scores); + ffastqReads.push_back(read641); + FastqRead read642; read642.setName("M00967_44_000000000-A3K85_1_1102_10893_5845"); + read642.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read643; read643.setName("M00967_44_000000000-A3K85_1_1102_25295_5872"); + read643.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACTCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read643.setScores(scores); + ffastqReads.push_back(read643); + FastqRead read644; read644.setName("M00967_44_000000000-A3K85_1_1102_18117_5878"); + read644.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGGAGGAATGCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTAACTGACGTTGAGGTTCGAAAGCGTGGGGAGAAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); read644.setScores(scores); + ffastqReads.push_back(read644); + FastqRead read645; read645.setName("M00967_44_000000000-A3K85_1_1102_7293_5909"); + read645.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read646.setScores(scores); + ffastqReads.push_back(read646); + FastqRead read647; read647.setName("M00967_44_000000000-A3K85_1_1102_13142_5936"); + read647.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read647.setScores(scores); + ffastqReads.push_back(read647); + FastqRead read648; read648.setName("M00967_44_000000000-A3K85_1_1102_24962_5989"); + read648.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read648.setScores(scores); + ffastqReads.push_back(read648); + FastqRead read649; read649.setName("M00967_44_000000000-A3K85_1_1102_24950_6004"); + read649.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(17); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(29); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read649.setScores(scores); + ffastqReads.push_back(read649); + FastqRead read650; read650.setName("M00967_44_000000000-A3K85_1_1102_6692_6022"); + read650.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCCGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(17); scores.push_back(19); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(15); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(33); read650.setScores(scores); + ffastqReads.push_back(read650); + FastqRead read651; read651.setName("M00967_44_000000000-A3K85_1_1102_22660_6031"); + read651.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGACCACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(27); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); read651.setScores(scores); + ffastqReads.push_back(read651); + FastqRead read652; read652.setName("M00967_44_000000000-A3K85_1_1102_6365_6101"); + read652.setSeq("TACGTAGGGTGCAAGCGTTATCCGGATTTACTGGGCGTAAAGGGAGCGCAGGCGGCGCGCCAAGTCTGATGTGAAACCCCGGGGCTCAACCCCGGGCATGCATTGGAAACTGGCGGGCTGGAGTGCCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGCAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); read652.setScores(scores); + ffastqReads.push_back(read652); + FastqRead read653; read653.setName("M00967_44_000000000-A3K85_1_1102_8646_6129"); + read653.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); read653.setScores(scores); + ffastqReads.push_back(read653); + FastqRead read654; read654.setName("M00967_44_000000000-A3K85_1_1102_8651_6146"); + read654.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(25); read654.setScores(scores); + ffastqReads.push_back(read654); + FastqRead read655; read655.setName("M00967_44_000000000-A3K85_1_1102_22820_6151"); + read655.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTTAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(24); read655.setScores(scores); + ffastqReads.push_back(read655); + FastqRead read656; read656.setName("M00967_44_000000000-A3K85_1_1102_11862_6197"); + read656.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read656.setScores(scores); + ffastqReads.push_back(read656); + FastqRead read657; read657.setName("M00967_44_000000000-A3K85_1_1102_19376_6262"); + read657.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read657.setScores(scores); + ffastqReads.push_back(read657); + FastqRead read658; read658.setName("M00967_44_000000000-A3K85_1_1102_24376_6276"); + read658.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); read659.setScores(scores); + ffastqReads.push_back(read659); + FastqRead read660; read660.setName("M00967_44_000000000-A3K85_1_1102_5855_6301"); + read660.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAGGATAAGTTGAATGTGAAATCTATGGGCTCAACCCATAGCTGCGTTCAAAACTGTTCTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAATGTAGCGGTGAAATGGGGTGATATTTAGAGGAAAAACAGTGGCCAAGGCGGCCTGCTGGGCTTTTACTGACGCTGAGGCTCGAAAACGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); 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scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(13); read660.setScores(scores); + ffastqReads.push_back(read660); + FastqRead read661; read661.setName("M00967_44_000000000-A3K85_1_1102_8183_6353"); + read661.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); read661.setScores(scores); + ffastqReads.push_back(read661); + FastqRead read662; read662.setName("M00967_44_000000000-A3K85_1_1102_17008_6430"); + read662.setSeq("TATGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(28); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); read662.setScores(scores); + ffastqReads.push_back(read662); + FastqRead read663; read663.setName("M00967_44_000000000-A3K85_1_1102_17025_6437"); + read663.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read663.setScores(scores); + ffastqReads.push_back(read663); + FastqRead read664; read664.setName("M00967_44_000000000-A3K85_1_1102_25830_6492"); + read664.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read664.setScores(scores); + ffastqReads.push_back(read664); + FastqRead read665; read665.setName("M00967_44_000000000-A3K85_1_1102_22911_6498"); + read665.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read665.setScores(scores); + ffastqReads.push_back(read665); + FastqRead read666; read666.setName("M00967_44_000000000-A3K85_1_1102_10852_6503"); + read666.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATACGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); read666.setScores(scores); + ffastqReads.push_back(read666); + FastqRead read667; read667.setName("M00967_44_000000000-A3K85_1_1102_7495_6588"); + read667.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(30); 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scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read667.setScores(scores); + ffastqReads.push_back(read667); + FastqRead read668; read668.setName("M00967_44_000000000-A3K85_1_1102_9313_6652"); + read668.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read668.setScores(scores); + ffastqReads.push_back(read668); + FastqRead read669; read669.setName("M00967_44_000000000-A3K85_1_1102_12469_6758"); + read669.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read669.setScores(scores); + ffastqReads.push_back(read669); + FastqRead read670; read670.setName("M00967_44_000000000-A3K85_1_1102_14602_6765"); + read670.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read670.setScores(scores); + ffastqReads.push_back(read670); + FastqRead read671; read671.setName("M00967_44_000000000-A3K85_1_1102_8840_6789"); + read671.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCAGCGCAAGTCTGGGGTGAAATGCCGGGGCCCAACCCCGGCACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTACGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCAGTGGCGACGGCGGCTTCCTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGGAACCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read671.setScores(scores); + ffastqReads.push_back(read671); + FastqRead read672; read672.setName("M00967_44_000000000-A3K85_1_1102_10376_6801"); + read672.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); read672.setScores(scores); + ffastqReads.push_back(read672); + FastqRead read673; read673.setName("M00967_44_000000000-A3K85_1_1102_20079_6815"); + read673.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read673.setScores(scores); + ffastqReads.push_back(read673); + FastqRead read674; read674.setName("M00967_44_000000000-A3K85_1_1102_5451_6867"); + read674.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); read674.setScores(scores); + ffastqReads.push_back(read674); + FastqRead read675; read675.setName("M00967_44_000000000-A3K85_1_1102_6027_6940"); + read675.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); read675.setScores(scores); + ffastqReads.push_back(read675); + FastqRead read676; read676.setName("M00967_44_000000000-A3K85_1_1102_10802_7033"); + read676.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read676.setScores(scores); + ffastqReads.push_back(read676); + FastqRead read677; read677.setName("M00967_44_000000000-A3K85_1_1102_21042_7108"); + read677.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); read677.setScores(scores); + ffastqReads.push_back(read677); + FastqRead read678; read678.setName("M00967_44_000000000-A3K85_1_1102_12327_7139"); + read678.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGCGTAAAGGGAGCGCAGGCGGCACGGCAAGTCCGGTGTGAAAGCCCGGGGCCCAACCCCGGGACTGCACTGGAAACTGCCGGGCTGGAGTGTCGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAAGGCGTAGATATTAGGAGGAAAACCGGTGGCGAAGGCGGCCTGCTGGACGACGACTGACGCTGAGGCTCGAAAGAGAGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); read678.setScores(scores); + ffastqReads.push_back(read678); + FastqRead read679; read679.setName("M00967_44_000000000-A3K85_1_1102_5813_7156"); + read679.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGAAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read679.setScores(scores); + ffastqReads.push_back(read679); + FastqRead read680; read680.setName("M00967_44_000000000-A3K85_1_1102_13620_7266"); + read680.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read680.setScores(scores); + ffastqReads.push_back(read680); + FastqRead read681; read681.setName("M00967_44_000000000-A3K85_1_1102_23915_7313"); + read681.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(29); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read682.setScores(scores); + ffastqReads.push_back(read682); + FastqRead read683; read683.setName("M00967_44_000000000-A3K85_1_1102_23457_7422"); + read683.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read683.setScores(scores); + ffastqReads.push_back(read683); + FastqRead read684; read684.setName("M00967_44_000000000-A3K85_1_1102_6984_7487"); + read684.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read685; read685.setName("M00967_44_000000000-A3K85_1_1102_15177_7497"); + read685.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read685.setScores(scores); + ffastqReads.push_back(read685); + FastqRead read686; read686.setName("M00967_44_000000000-A3K85_1_1102_11679_7510"); + read686.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read686.setScores(scores); + ffastqReads.push_back(read686); + FastqRead read687; read687.setName("M00967_44_000000000-A3K85_1_1102_10886_7525"); + read687.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); read688.setScores(scores); + ffastqReads.push_back(read688); + FastqRead read689; read689.setName("M00967_44_000000000-A3K85_1_1102_9371_7687"); + read689.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTACAAGTCTGAAGTGAAAGCCCGTGGCTCAACCGCGGAACTGCTTTGGAAACTGTAAAGCTGGAGTACTGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAGAAAATGACGTTGAGGCTCGAAAACGTGGGGGGCAAAAA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(13); read689.setScores(scores); + ffastqReads.push_back(read689); + FastqRead read690; read690.setName("M00967_44_000000000-A3K85_1_1102_7101_7694"); + read690.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCGATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTTGCTAGATCGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read690.setScores(scores); + ffastqReads.push_back(read690); + FastqRead read691; read691.setName("M00967_44_000000000-A3K85_1_1102_23933_7825"); + read691.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read691.setScores(scores); + ffastqReads.push_back(read691); + FastqRead read692; read692.setName("M00967_44_000000000-A3K85_1_1102_18183_7841"); + read692.setSeq("TACGTAGGGGGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCGAAA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read692.setScores(scores); + ffastqReads.push_back(read692); + FastqRead read693; read693.setName("M00967_44_000000000-A3K85_1_1102_17269_7866"); + read693.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read693.setScores(scores); + ffastqReads.push_back(read693); + FastqRead read694; read694.setName("M00967_44_000000000-A3K85_1_1102_20777_7872"); + read694.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read696.setScores(scores); + ffastqReads.push_back(read696); + FastqRead read697; read697.setName("M00967_44_000000000-A3K85_1_1102_25693_8060"); + read697.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read697.setScores(scores); + ffastqReads.push_back(read697); + FastqRead read698; read698.setName("M00967_44_000000000-A3K85_1_1102_11843_8065"); + read698.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCCAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read698.setScores(scores); + ffastqReads.push_back(read698); + FastqRead read699; read699.setName("M00967_44_000000000-A3K85_1_1102_20746_8081"); + read699.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read699.setScores(scores); + ffastqReads.push_back(read699); + FastqRead read700; read700.setName("M00967_44_000000000-A3K85_1_1102_17852_8103"); + read700.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read700.setScores(scores); + ffastqReads.push_back(read700); + FastqRead read701; read701.setName("M00967_44_000000000-A3K85_1_1102_10638_8143"); + read701.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read701.setScores(scores); + ffastqReads.push_back(read701); + FastqRead read702; read702.setName("M00967_44_000000000-A3K85_1_1102_12191_8252"); + read702.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read702.setScores(scores); + ffastqReads.push_back(read702); + FastqRead read703; read703.setName("M00967_44_000000000-A3K85_1_1102_21864_8263"); + read703.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAGGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read703.setScores(scores); + ffastqReads.push_back(read703); + FastqRead read704; read704.setName("M00967_44_000000000-A3K85_1_1102_25794_8267"); + read704.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read704.setScores(scores); + ffastqReads.push_back(read704); + FastqRead read705; read705.setName("M00967_44_000000000-A3K85_1_1102_17029_8276"); + read705.setSeq("TACGGAGGATGCGAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAAA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); read705.setScores(scores); + ffastqReads.push_back(read705); + FastqRead read706; read706.setName("M00967_44_000000000-A3K85_1_1102_24343_8332"); + read706.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGGGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGTAACTGACGTTGAGGCTCGAAAGGGGGGGGAGCAAAAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(30); scores.push_back(38); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(27); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); read706.setScores(scores); + ffastqReads.push_back(read706); + FastqRead read707; read707.setName("M00967_44_000000000-A3K85_1_1102_15259_8369"); + read707.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTCGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read707.setScores(scores); + ffastqReads.push_back(read707); + FastqRead read708; read708.setName("M00967_44_000000000-A3K85_1_1102_20625_8391"); + read708.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read708.setScores(scores); + ffastqReads.push_back(read708); + FastqRead read709; read709.setName("M00967_44_000000000-A3K85_1_1102_6857_8392"); + read709.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read709.setScores(scores); + ffastqReads.push_back(read709); + FastqRead read710; read710.setName("M00967_44_000000000-A3K85_1_1102_19527_8470"); + read710.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read710.setScores(scores); + ffastqReads.push_back(read710); + FastqRead read711; read711.setName("M00967_44_000000000-A3K85_1_1102_22065_8478"); + read711.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read711.setScores(scores); + ffastqReads.push_back(read711); + FastqRead read712; read712.setName("M00967_44_000000000-A3K85_1_1102_4377_8479"); + read712.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGACCTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); 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scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); read712.setScores(scores); + ffastqReads.push_back(read712); + FastqRead read713; read713.setName("M00967_44_000000000-A3K85_1_1102_7046_8528"); + read713.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCTGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACCGGCGGGCTCGAGTGGGCGGGGAGGAAGGGGGATGCGTGGTGGAGCCGGGGAATGCCTAGATTATACGGAGAAACACCATTGGGAAGGGCGCCTTACGGGGCCCGACCGGACGTTGAGGCCCGAAGCCGTGGGATCGAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); read713.setScores(scores); + ffastqReads.push_back(read713); + FastqRead read714; read714.setName("M00967_44_000000000-A3K85_1_1102_18908_8597"); + read714.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCGGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read714.setScores(scores); + ffastqReads.push_back(read714); + FastqRead read715; read715.setName("M00967_44_000000000-A3K85_1_1102_26417_8599"); + read715.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read715.setScores(scores); + ffastqReads.push_back(read715); + FastqRead read716; read716.setName("M00967_44_000000000-A3K85_1_1102_20939_8613"); + read716.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(18); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(27); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(14); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(29); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read716.setScores(scores); + ffastqReads.push_back(read716); + FastqRead read717; read717.setName("M00967_44_000000000-A3K85_1_1102_19113_8714"); + read717.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTAGGGAGCAAACGG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read717.setScores(scores); + ffastqReads.push_back(read717); + FastqRead read718; read718.setName("M00967_44_000000000-A3K85_1_1102_6254_8779"); + read718.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGCAAGCGTGGGGAGCAAAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(20); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(26); read718.setScores(scores); + ffastqReads.push_back(read718); + FastqRead read719; read719.setName("M00967_44_000000000-A3K85_1_1102_17348_8932"); + read719.setSeq("TACGTAGGGGGCGAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCAGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); read719.setScores(scores); + ffastqReads.push_back(read719); + FastqRead read720; read720.setName("M00967_44_000000000-A3K85_1_1102_19645_8958"); + read720.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read720.setScores(scores); + ffastqReads.push_back(read720); + FastqRead read721; read721.setName("M00967_44_000000000-A3K85_1_1102_13366_8999"); + read721.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read721.setScores(scores); + ffastqReads.push_back(read721); + FastqRead read722; read722.setName("M00967_44_000000000-A3K85_1_1102_22033_9031"); + read722.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(13); read722.setScores(scores); + ffastqReads.push_back(read722); + FastqRead read723; read723.setName("M00967_44_000000000-A3K85_1_1102_20668_9045"); + read723.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read724.setScores(scores); + ffastqReads.push_back(read724); + FastqRead read725; read725.setName("M00967_44_000000000-A3K85_1_1102_14833_9169"); + read725.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAGGATAAGTTGAATGTGAAATCTATGGGCTCAACCCATAGCTGCGTTCAAAACTGTTCTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGGAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGGTTTTACTGACGCTGAGGCTCGGAAGGGTGGGTAGCCAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(14); read725.setScores(scores); + ffastqReads.push_back(read725); + FastqRead read726; read726.setName("M00967_44_000000000-A3K85_1_1102_7268_9245"); + read726.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(28); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read726.setScores(scores); + ffastqReads.push_back(read726); + FastqRead read727; read727.setName("M00967_44_000000000-A3K85_1_1102_25304_9280"); + read727.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read727.setScores(scores); + ffastqReads.push_back(read727); + FastqRead read728; read728.setName("M00967_44_000000000-A3K85_1_1102_19256_9368"); + read728.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read728.setScores(scores); + ffastqReads.push_back(read728); + FastqRead read729; read729.setName("M00967_44_000000000-A3K85_1_1102_7643_9381"); + read729.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read729.setScores(scores); + ffastqReads.push_back(read729); + FastqRead read730; read730.setName("M00967_44_000000000-A3K85_1_1102_20682_9443"); + read730.setSeq("TGCGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read730.setScores(scores); + ffastqReads.push_back(read730); + FastqRead read731; read731.setName("M00967_44_000000000-A3K85_1_1102_19543_9447"); + read731.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGGAGTAGTGCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAAGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTAACTGACGCTGAGGTTCGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); read731.setScores(scores); + ffastqReads.push_back(read731); + FastqRead read732; read732.setName("M00967_44_000000000-A3K85_1_1102_18694_9494"); + read732.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGAGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read732.setScores(scores); + ffastqReads.push_back(read732); + FastqRead read733; read733.setName("M00967_44_000000000-A3K85_1_1102_18420_9540"); + read733.setSeq("TACGGAGGATCCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGCGAGAAAGTTGAATGTTAAATCTACCGGCTTAACTGGTAGCTGCGTTCAAAACTTCTTGTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAACGTGGGGGGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); read733.setScores(scores); + ffastqReads.push_back(read733); + FastqRead read734; read734.setName("M00967_44_000000000-A3K85_1_1102_4744_9626"); + read734.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(13); read734.setScores(scores); + ffastqReads.push_back(read734); + FastqRead read735; read735.setName("M00967_44_000000000-A3K85_1_1102_9458_9627"); + read735.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read735.setScores(scores); + ffastqReads.push_back(read735); + FastqRead read736; read736.setName("M00967_44_000000000-A3K85_1_1102_5989_9637"); + read736.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read737.setScores(scores); + ffastqReads.push_back(read737); + FastqRead read738; read738.setName("M00967_44_000000000-A3K85_1_1102_14621_9663"); + read738.setSeq("TACGGAGGATGCGAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read738.setScores(scores); + ffastqReads.push_back(read738); + FastqRead read739; read739.setName("M00967_44_000000000-A3K85_1_1102_27457_9673"); + read739.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGAACTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTAACTGACGCTGAAGCACGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read739.setScores(scores); + ffastqReads.push_back(read739); + FastqRead read740; read740.setName("M00967_44_000000000-A3K85_1_1102_24895_9705"); + read740.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCCCGAAAGTGTGGGTATCGAAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(35); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); read740.setScores(scores); + ffastqReads.push_back(read740); + FastqRead read741; read741.setName("M00967_44_000000000-A3K85_1_1102_13149_9739"); + read741.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGTGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGGACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(31); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(29); scores.push_back(34); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(27); scores.push_back(32); scores.push_back(38); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read741.setScores(scores); + ffastqReads.push_back(read741); + FastqRead read742; read742.setName("M00967_44_000000000-A3K85_1_1102_15403_9761"); + read742.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(29); scores.push_back(29); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(35); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); read742.setScores(scores); + ffastqReads.push_back(read742); + FastqRead read743; read743.setName("M00967_44_000000000-A3K85_1_1102_17584_9801"); + read743.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read743.setScores(scores); + ffastqReads.push_back(read743); + FastqRead read744; read744.setName("M00967_44_000000000-A3K85_1_1102_27984_9822"); + read744.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTAAAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGGATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(28); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(36); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(27); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); read744.setScores(scores); + ffastqReads.push_back(read744); + FastqRead read745; read745.setName("M00967_44_000000000-A3K85_1_1102_26268_9892"); + read745.setSeq("TACGTATGGTGCAAGCGTTATCCGGAATGACTGGGTGTAAAGGGAGCGTAGACGGTTGTACAAGTCTGATGTGAAAGCCCACGGCTCAACTGTGGGAGTGCATTGGAAACTGTAGAACTAGAGTATCGGAGAGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACGAAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read745.setScores(scores); + ffastqReads.push_back(read745); + FastqRead read746; read746.setName("M00967_44_000000000-A3K85_1_1102_9375_9903"); + read746.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read746.setScores(scores); + ffastqReads.push_back(read746); + FastqRead read747; read747.setName("M00967_44_000000000-A3K85_1_1102_19323_9925"); + read747.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(13); read747.setScores(scores); + ffastqReads.push_back(read747); + FastqRead read748; read748.setName("M00967_44_000000000-A3K85_1_1102_26447_9991"); + read748.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read748.setScores(scores); + ffastqReads.push_back(read748); + FastqRead read749; read749.setName("M00967_44_000000000-A3K85_1_1102_24734_9991"); + read749.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); read750.setScores(scores); + ffastqReads.push_back(read750); + FastqRead read751; read751.setName("M00967_44_000000000-A3K85_1_1102_3404_10151"); + read751.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCCTAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCCCGGGCCTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGCCTTACTGGACAGTAACTGACGTTGAGGACCGAAACCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); 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scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); read751.setScores(scores); + ffastqReads.push_back(read751); + FastqRead read752; read752.setName("M00967_44_000000000-A3K85_1_1102_27873_10257"); + read752.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read752.setScores(scores); + ffastqReads.push_back(read752); + FastqRead read753; read753.setName("M00967_44_000000000-A3K85_1_1102_10760_10258"); + read753.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read753.setScores(scores); + ffastqReads.push_back(read753); + FastqRead read754; read754.setName("M00967_44_000000000-A3K85_1_1102_14134_10326"); + read754.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read754.setScores(scores); + ffastqReads.push_back(read754); + FastqRead read755; read755.setName("M00967_44_000000000-A3K85_1_1102_17936_10334"); + read755.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGATGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read755.setScores(scores); + ffastqReads.push_back(read755); + FastqRead read756; read756.setName("M00967_44_000000000-A3K85_1_1102_18521_10367"); + read756.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read756.setScores(scores); + ffastqReads.push_back(read756); + FastqRead read757; read757.setName("M00967_44_000000000-A3K85_1_1102_3314_10392"); + read757.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); read757.setScores(scores); + ffastqReads.push_back(read757); + FastqRead read758; read758.setName("M00967_44_000000000-A3K85_1_1102_16497_10489"); + read758.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read758.setScores(scores); + ffastqReads.push_back(read758); + FastqRead read759; read759.setName("M00967_44_000000000-A3K85_1_1102_18361_10509"); + read759.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read759.setScores(scores); + ffastqReads.push_back(read759); + FastqRead read760; read760.setName("M00967_44_000000000-A3K85_1_1102_22232_10552"); + read760.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read760.setScores(scores); + ffastqReads.push_back(read760); + FastqRead read761; read761.setName("M00967_44_000000000-A3K85_1_1102_18980_10587"); + read761.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read761.setScores(scores); + ffastqReads.push_back(read761); + FastqRead read762; read762.setName("M00967_44_000000000-A3K85_1_1102_27674_10618"); + read762.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read762.setScores(scores); + ffastqReads.push_back(read762); + FastqRead read763; read763.setName("M00967_44_000000000-A3K85_1_1102_5578_10651"); + read763.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGACTGCAAGTCAGATGTGAAACCCATGGGCTCAACCCATGGCCTGCATTTGAAACTGTAGTTCTTGAGTGATGGAGAGGCAGGCGGAATTCCGTGTGTAGCGGTGAAATGCGGAGATATATGGAGGAACACCAGTGGCGAAGGCGGCCTCCTGGTCTGCCACTGACACTGAGGCGCGAAAGCGGGGGGAGACAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); read763.setScores(scores); + ffastqReads.push_back(read763); + FastqRead read764; read764.setName("M00967_44_000000000-A3K85_1_1102_14339_10656"); + read764.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read764.setScores(scores); + ffastqReads.push_back(read764); + FastqRead read765; read765.setName("M00967_44_000000000-A3K85_1_1102_3035_10716"); + read765.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read766.setScores(scores); + ffastqReads.push_back(read766); + FastqRead read767; read767.setName("M00967_44_000000000-A3K85_1_1102_27194_10763"); + read767.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read767.setScores(scores); + ffastqReads.push_back(read767); + FastqRead read768; read768.setName("M00967_44_000000000-A3K85_1_1102_18980_10780"); + read768.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(37); read768.setScores(scores); + ffastqReads.push_back(read768); + FastqRead read769; read769.setName("M00967_44_000000000-A3K85_1_1102_9675_10795"); + read769.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read769.setScores(scores); + ffastqReads.push_back(read769); + FastqRead read770; read770.setName("M00967_44_000000000-A3K85_1_1102_7354_10796"); + read770.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read770.setScores(scores); + ffastqReads.push_back(read770); + FastqRead read771; read771.setName("M00967_44_000000000-A3K85_1_1102_28754_10878"); + read771.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read771.setScores(scores); + ffastqReads.push_back(read771); + FastqRead read772; read772.setName("M00967_44_000000000-A3K85_1_1102_20648_10881"); + read772.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGGGTGCGTAGGCGGCGCAGTTAGTCAGAAGTGAAATATCGGGGCTTAACCCCGGGGCTGCTTCTGATACTGCTGTGCTCGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGACTTACTGGACTGTAACTGACGCTGAGGCACGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); 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scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read772.setScores(scores); + ffastqReads.push_back(read772); + FastqRead read773; read773.setName("M00967_44_000000000-A3K85_1_1102_18164_10943"); + read773.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read773.setScores(scores); + ffastqReads.push_back(read773); + FastqRead read774; read774.setName("M00967_44_000000000-A3K85_1_1102_13528_10956"); + read774.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read774.setScores(scores); + ffastqReads.push_back(read774); + FastqRead read775; read775.setName("M00967_44_000000000-A3K85_1_1102_7988_10976"); + read775.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read775.setScores(scores); + ffastqReads.push_back(read775); + FastqRead read776; read776.setName("M00967_44_000000000-A3K85_1_1102_21910_11076"); + read776.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read776.setScores(scores); + ffastqReads.push_back(read776); + FastqRead read777; read777.setName("M00967_44_000000000-A3K85_1_1102_22267_11082"); + read777.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGGGTGGGGAGCAAAA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); read777.setScores(scores); + ffastqReads.push_back(read777); + FastqRead read778; read778.setName("M00967_44_000000000-A3K85_1_1102_3732_11179"); + read778.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGCTATTTGGAGGAACACCAGTGGCGAAGGCGGCCCGCTGGACGATGACTGACGTTGAGGCTCCAAAGCCTGGGGGGCCAAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read779.setScores(scores); + ffastqReads.push_back(read779); + FastqRead read780; read780.setName("M00967_44_000000000-A3K85_1_1102_17762_11301"); + read780.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCATGCAGAACCCCGATTGCGGAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read780.setScores(scores); + ffastqReads.push_back(read780); + FastqRead read781; read781.setName("M00967_44_000000000-A3K85_1_1102_23257_11367"); + read781.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGTATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); read781.setScores(scores); + ffastqReads.push_back(read781); + FastqRead read782; read782.setName("M00967_44_000000000-A3K85_1_1102_18932_11393"); + read782.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read782.setScores(scores); + ffastqReads.push_back(read782); + FastqRead read783; read783.setName("M00967_44_000000000-A3K85_1_1102_28272_11398"); + read783.setSeq("TACGGAGGATACGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read783.setScores(scores); + ffastqReads.push_back(read783); + FastqRead read784; read784.setName("M00967_44_000000000-A3K85_1_1102_4509_11442"); + read784.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGTCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); read784.setScores(scores); + ffastqReads.push_back(read784); + FastqRead read785; read785.setName("M00967_44_000000000-A3K85_1_1102_10304_11460"); + read785.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read785.setScores(scores); + ffastqReads.push_back(read785); + FastqRead read786; read786.setName("M00967_44_000000000-A3K85_1_1102_20509_11465"); + read786.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read786.setScores(scores); + ffastqReads.push_back(read786); + FastqRead read787; read787.setName("M00967_44_000000000-A3K85_1_1102_26039_11489"); + read787.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read787.setScores(scores); + ffastqReads.push_back(read787); + FastqRead read788; read788.setName("M00967_44_000000000-A3K85_1_1102_7342_11561"); + read788.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read788.setScores(scores); + ffastqReads.push_back(read788); + FastqRead read789; read789.setName("M00967_44_000000000-A3K85_1_1102_20742_11581"); + read789.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read789.setScores(scores); + ffastqReads.push_back(read789); + FastqRead read790; read790.setName("M00967_44_000000000-A3K85_1_1102_19188_11683"); + read790.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read790.setScores(scores); + ffastqReads.push_back(read790); + FastqRead read791; read791.setName("M00967_44_000000000-A3K85_1_1102_11109_11761"); + read791.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(25); read792.setScores(scores); + ffastqReads.push_back(read792); + FastqRead read793; read793.setName("M00967_44_000000000-A3K85_1_1102_4602_11807"); + read793.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read793.setScores(scores); + ffastqReads.push_back(read793); + FastqRead read794; read794.setName("M00967_44_000000000-A3K85_1_1102_19082_11813"); + read794.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGAGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(13); read794.setScores(scores); + ffastqReads.push_back(read794); + FastqRead read795; read795.setName("M00967_44_000000000-A3K85_1_1102_21891_11869"); + read795.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read795.setScores(scores); + ffastqReads.push_back(read795); + FastqRead read796; read796.setName("M00967_44_000000000-A3K85_1_1102_8531_11870"); + read796.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGAAGGCAAGTCAGATGTGAAATCTGGAGGCTCAACCTCCAAATTGCATTTGAAACTGTTTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGGTGAGGCGCGAAAGCGTGGGGATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read796.setScores(scores); + ffastqReads.push_back(read796); + FastqRead read797; read797.setName("M00967_44_000000000-A3K85_1_1102_28700_11964"); + read797.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); read797.setScores(scores); + ffastqReads.push_back(read797); + FastqRead read798; read798.setName("M00967_44_000000000-A3K85_1_1102_10402_12045"); + read798.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGTCCTGCCGTTGAAACTGGTGTCCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); 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scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read798.setScores(scores); + ffastqReads.push_back(read798); + FastqRead read799; read799.setName("M00967_44_000000000-A3K85_1_1102_22668_12078"); + read799.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATTCAAGTCAGATGTGAAAACTATGGGCTCAACCCATACCCTGCATTTGAAACTGTATTTTTTGAGGGCTGGAGAGGCAATCGGAATTCCGGGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACCCCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(39); 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scores.push_back(33); scores.push_back(27); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(30); scores.push_back(27); scores.push_back(15); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(28); scores.push_back(15); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); read799.setScores(scores); + ffastqReads.push_back(read799); + FastqRead read800; read800.setName("M00967_44_000000000-A3K85_1_1102_28276_12186"); + read800.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGAATGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCCCTGGACTGTAACTGACGTTGAGGCTCGAAAGGGGGGGGGGCAAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(20); scores.push_back(31); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(28); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(14); read800.setScores(scores); + ffastqReads.push_back(read800); + FastqRead read801; read801.setName("M00967_44_000000000-A3K85_1_1102_27651_12192"); + read801.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); read801.setScores(scores); + ffastqReads.push_back(read801); + FastqRead read802; read802.setName("M00967_44_000000000-A3K85_1_1102_23824_12195"); + read802.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read802.setScores(scores); + ffastqReads.push_back(read802); + FastqRead read803; read803.setName("M00967_44_000000000-A3K85_1_1102_22152_12255"); + read803.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read803.setScores(scores); + ffastqReads.push_back(read803); + FastqRead read804; read804.setName("M00967_44_000000000-A3K85_1_1102_12591_12295"); + read804.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read805.setScores(scores); + ffastqReads.push_back(read805); + FastqRead read806; read806.setName("M00967_44_000000000-A3K85_1_1102_19760_12313"); + read806.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read806.setScores(scores); + ffastqReads.push_back(read806); + FastqRead read807; read807.setName("M00967_44_000000000-A3K85_1_1102_11332_12337"); + read807.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTTCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read807.setScores(scores); + ffastqReads.push_back(read807); + FastqRead read808; read808.setName("M00967_44_000000000-A3K85_1_1102_21714_12340"); + read808.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read808.setScores(scores); + ffastqReads.push_back(read808); + FastqRead read809; read809.setName("M00967_44_000000000-A3K85_1_1102_4985_12360"); + read809.setSeq("TACGGAGGATGCGAACGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(37); read809.setScores(scores); + ffastqReads.push_back(read809); + FastqRead read810; read810.setName("M00967_44_000000000-A3K85_1_1102_4337_12433"); + read810.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(33); read810.setScores(scores); + ffastqReads.push_back(read810); + FastqRead read811; read811.setName("M00967_44_000000000-A3K85_1_1102_10168_12485"); + read811.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read811.setScores(scores); + ffastqReads.push_back(read811); + FastqRead read812; read812.setName("M00967_44_000000000-A3K85_1_1102_2789_12538"); + read812.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(25); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); read812.setScores(scores); + ffastqReads.push_back(read812); + FastqRead read813; read813.setName("M00967_44_000000000-A3K85_1_1102_10294_12597"); + read813.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read813.setScores(scores); + ffastqReads.push_back(read813); + FastqRead read814; read814.setName("M00967_44_000000000-A3K85_1_1102_5819_12607"); + read814.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCGCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read814.setScores(scores); + ffastqReads.push_back(read814); + FastqRead read815; read815.setName("M00967_44_000000000-A3K85_1_1102_7829_12633"); + read815.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTGGCGGGTGAAATCAGAAAAATCACGCAGAAACCCCAGTGCGAAAGGAGCCTTCCGGCGCCCTACTTACCCTTAGGGCCCGAAGGGGGGGGGTCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(14); read815.setScores(scores); + ffastqReads.push_back(read815); + FastqRead read816; read816.setName("M00967_44_000000000-A3K85_1_1102_18246_12643"); + read816.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read816.setScores(scores); + ffastqReads.push_back(read816); + FastqRead read817; read817.setName("M00967_44_000000000-A3K85_1_1102_22647_12655"); + read817.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); 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+ FastqRead read818; read818.setName("M00967_44_000000000-A3K85_1_1102_7783_12688"); + read818.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read818.setScores(scores); + ffastqReads.push_back(read818); + FastqRead read819; read819.setName("M00967_44_000000000-A3K85_1_1102_10234_12715"); + read819.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read819.setScores(scores); + ffastqReads.push_back(read819); + FastqRead read820; read820.setName("M00967_44_000000000-A3K85_1_1102_28486_12725"); + read820.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(13); read821.setScores(scores); + ffastqReads.push_back(read821); + FastqRead read822; read822.setName("M00967_44_000000000-A3K85_1_1102_22796_12761"); + read822.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCAGTGCAAGTCTGGAGTGAAAGCCCGGGGCCCAACCCCGGAACTGCTCTGGAAACTGTGCGGCTAGAGTACTGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read822.setScores(scores); + ffastqReads.push_back(read822); + FastqRead read823; read823.setName("M00967_44_000000000-A3K85_1_1102_9947_12767"); + read823.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); read823.setScores(scores); + ffastqReads.push_back(read823); + FastqRead read824; read824.setName("M00967_44_000000000-A3K85_1_1102_7373_12798"); + read824.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read824.setScores(scores); + ffastqReads.push_back(read824); + FastqRead read825; read825.setName("M00967_44_000000000-A3K85_1_1102_7527_12804"); + read825.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGAGTGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTACTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read825.setScores(scores); + ffastqReads.push_back(read825); + FastqRead read826; read826.setName("M00967_44_000000000-A3K85_1_1102_8853_12872"); + read826.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(28); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); read826.setScores(scores); + ffastqReads.push_back(read826); + FastqRead read827; read827.setName("M00967_44_000000000-A3K85_1_1102_23994_12951"); + read827.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); read828.setScores(scores); + ffastqReads.push_back(read828); + FastqRead read829; read829.setName("M00967_44_000000000-A3K85_1_1102_29263_13137"); + read829.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); read829.setScores(scores); + ffastqReads.push_back(read829); + FastqRead read830; read830.setName("M00967_44_000000000-A3K85_1_1102_17440_13173"); + read830.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read830.setScores(scores); + ffastqReads.push_back(read830); + FastqRead read831; read831.setName("M00967_44_000000000-A3K85_1_1102_23074_13203"); + read831.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGATCTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read831.setScores(scores); + ffastqReads.push_back(read831); + FastqRead read832; read832.setName("M00967_44_000000000-A3K85_1_1102_25216_13217"); + read832.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); read832.setScores(scores); + ffastqReads.push_back(read832); + FastqRead read833; read833.setName("M00967_44_000000000-A3K85_1_1102_14731_13237"); + read833.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(19); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(26); read833.setScores(scores); + ffastqReads.push_back(read833); + FastqRead read834; read834.setName("M00967_44_000000000-A3K85_1_1102_8450_13354"); + read834.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGTGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read834.setScores(scores); + ffastqReads.push_back(read834); + FastqRead read835; read835.setName("M00967_44_000000000-A3K85_1_1102_4713_13363"); + read835.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read835.setScores(scores); + ffastqReads.push_back(read835); + FastqRead read836; read836.setName("M00967_44_000000000-A3K85_1_1102_12240_13465"); + read836.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read836.setScores(scores); + ffastqReads.push_back(read836); + FastqRead read837; read837.setName("M00967_44_000000000-A3K85_1_1102_29304_13515"); + read837.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); read837.setScores(scores); + ffastqReads.push_back(read837); + FastqRead read838; read838.setName("M00967_44_000000000-A3K85_1_1102_18822_13540"); + read838.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATCACTGGGTGTAAAGGGAGCGTAGACGGCTGAGCAAGCCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGGAACTGTACGGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read838.setScores(scores); + ffastqReads.push_back(read838); + FastqRead read839; read839.setName("M00967_44_000000000-A3K85_1_1102_16321_13542"); + read839.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read839.setScores(scores); + ffastqReads.push_back(read839); + FastqRead read840; read840.setName("M00967_44_000000000-A3K85_1_1102_16575_13610"); + read840.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read840.setScores(scores); + ffastqReads.push_back(read840); + FastqRead read841; read841.setName("M00967_44_000000000-A3K85_1_1102_20301_13616"); + read841.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read841.setScores(scores); + ffastqReads.push_back(read841); + FastqRead read842; read842.setName("M00967_44_000000000-A3K85_1_1102_21446_13693"); + read842.setSeq("TACGGAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read842.setScores(scores); + ffastqReads.push_back(read842); + FastqRead read843; read843.setName("M00967_44_000000000-A3K85_1_1102_26513_13699"); + read843.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read843.setScores(scores); + ffastqReads.push_back(read843); + FastqRead read844; read844.setName("M00967_44_000000000-A3K85_1_1102_27495_13700"); + read844.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read844.setScores(scores); + ffastqReads.push_back(read844); + FastqRead read845; read845.setName("M00967_44_000000000-A3K85_1_1102_19173_13708"); + read845.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read845.setScores(scores); + ffastqReads.push_back(read845); + FastqRead read846; read846.setName("M00967_44_000000000-A3K85_1_1102_5288_13737"); + read846.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); read846.setScores(scores); + ffastqReads.push_back(read846); + FastqRead read847; read847.setName("M00967_44_000000000-A3K85_1_1102_13642_13755"); + read847.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGGATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read847.setScores(scores); + ffastqReads.push_back(read847); + FastqRead read848; read848.setName("M00967_44_000000000-A3K85_1_1102_6165_13769"); + read848.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read848.setScores(scores); + ffastqReads.push_back(read848); + FastqRead read849; read849.setName("M00967_44_000000000-A3K85_1_1102_28634_13773"); + read849.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTGCAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAAA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(13); read849.setScores(scores); + ffastqReads.push_back(read849); + FastqRead read850; read850.setName("M00967_44_000000000-A3K85_1_1102_21299_13774"); + read850.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read850.setScores(scores); + ffastqReads.push_back(read850); + FastqRead read851; read851.setName("M00967_44_000000000-A3K85_1_1102_10489_13896"); + read851.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGTGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(37); read851.setScores(scores); + ffastqReads.push_back(read851); + FastqRead read852; read852.setName("M00967_44_000000000-A3K85_1_1102_9531_13954"); + read852.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read852.setScores(scores); + ffastqReads.push_back(read852); + FastqRead read853; read853.setName("M00967_44_000000000-A3K85_1_1102_11369_13997"); + read853.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGTTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read853.setScores(scores); + ffastqReads.push_back(read853); + FastqRead read854; read854.setName("M00967_44_000000000-A3K85_1_1102_2805_14003"); + read854.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGACTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read854.setScores(scores); + ffastqReads.push_back(read854); + FastqRead read855; read855.setName("M00967_44_000000000-A3K85_1_1102_12793_14108"); + read855.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read855.setScores(scores); + ffastqReads.push_back(read855); + FastqRead read856; read856.setName("M00967_44_000000000-A3K85_1_1102_19900_14215"); + read856.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read857.setScores(scores); + ffastqReads.push_back(read857); + FastqRead read858; read858.setName("M00967_44_000000000-A3K85_1_1102_22339_14240"); + read858.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read858.setScores(scores); + ffastqReads.push_back(read858); + FastqRead read859; read859.setName("M00967_44_000000000-A3K85_1_1102_19817_14247"); + read859.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read859.setScores(scores); + ffastqReads.push_back(read859); + FastqRead read860; read860.setName("M00967_44_000000000-A3K85_1_1102_6298_14256"); + read860.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCACGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read860.setScores(scores); + ffastqReads.push_back(read860); + FastqRead read861; read861.setName("M00967_44_000000000-A3K85_1_1102_20988_14263"); + read861.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read861.setScores(scores); + ffastqReads.push_back(read861); + FastqRead read862; read862.setName("M00967_44_000000000-A3K85_1_1102_28089_14363"); + read862.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); read862.setScores(scores); + ffastqReads.push_back(read862); + FastqRead read863; read863.setName("M00967_44_000000000-A3K85_1_1102_27264_14368"); + read863.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read863.setScores(scores); + ffastqReads.push_back(read863); + FastqRead read864; read864.setName("M00967_44_000000000-A3K85_1_1102_20479_14459"); + read864.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read864.setScores(scores); + ffastqReads.push_back(read864); + FastqRead read865; read865.setName("M00967_44_000000000-A3K85_1_1102_18839_14597"); + read865.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read865.setScores(scores); + ffastqReads.push_back(read865); + FastqRead read866; read866.setName("M00967_44_000000000-A3K85_1_1102_21603_14620"); + read866.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read866.setScores(scores); + ffastqReads.push_back(read866); + FastqRead read867; read867.setName("M00967_44_000000000-A3K85_1_1102_7186_14674"); + read867.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read867.setScores(scores); + ffastqReads.push_back(read867); + FastqRead read868; read868.setName("M00967_44_000000000-A3K85_1_1102_21350_14715"); + read868.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read868.setScores(scores); + ffastqReads.push_back(read868); + FastqRead read869; read869.setName("M00967_44_000000000-A3K85_1_1102_20472_14719"); + read869.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGTTGACAAGTCAGATGTGAAATCCGGCGGCTTAACCGCAGAACTGCATTTGAAACTGTTGATCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGGTGAGGCGCGAAAGCGTGGGGATCGAACA"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); read869.setScores(scores); + ffastqReads.push_back(read869); + FastqRead read870; read870.setName("M00967_44_000000000-A3K85_1_1102_8355_14747"); + read870.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read870.setScores(scores); + ffastqReads.push_back(read870); + FastqRead read871; read871.setName("M00967_44_000000000-A3K85_1_1102_8372_14747"); + read871.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGAGCGCAACTGACGCTCATGCCCGAAAGCGGGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); 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scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); read871.setScores(scores); + ffastqReads.push_back(read871); + FastqRead read872; read872.setName("M00967_44_000000000-A3K85_1_1102_25161_14836"); + read872.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGTTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read872.setScores(scores); + ffastqReads.push_back(read872); + FastqRead read873; read873.setName("M00967_44_000000000-A3K85_1_1102_26656_14852"); + read873.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTTCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read873.setScores(scores); + ffastqReads.push_back(read873); + FastqRead read874; read874.setName("M00967_44_000000000-A3K85_1_1102_19768_14866"); + read874.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read874.setScores(scores); + ffastqReads.push_back(read874); + FastqRead read875; read875.setName("M00967_44_000000000-A3K85_1_1102_8420_14902"); + read875.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read875.setScores(scores); + ffastqReads.push_back(read875); + FastqRead read876; read876.setName("M00967_44_000000000-A3K85_1_1102_2209_14915"); + read876.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGAAGCTCATGCACGAAAGCGTGGGTATCGAACCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); read876.setScores(scores); + ffastqReads.push_back(read876); + FastqRead read877; read877.setName("M00967_44_000000000-A3K85_1_1102_24707_14936"); + read877.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read877.setScores(scores); + ffastqReads.push_back(read877); + FastqRead read878; read878.setName("M00967_44_000000000-A3K85_1_1102_29647_14957"); + read878.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGACGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGAATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACAGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(17); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(29); scores.push_back(17); scores.push_back(29); scores.push_back(29); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(37); read878.setScores(scores); + ffastqReads.push_back(read878); + FastqRead read879; read879.setName("M00967_44_000000000-A3K85_1_1102_18604_15010"); + read879.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCAAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read879.setScores(scores); + ffastqReads.push_back(read879); + FastqRead read880; read880.setName("M00967_44_000000000-A3K85_1_1102_3259_15070"); + read880.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGTGTAAAGGGAGCGTAGACGGCCATGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGCGACTGACGTTGAGGCTCGAAAGCGGGGGGAGCGAAAA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(28); scores.push_back(28); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read880.setScores(scores); + ffastqReads.push_back(read880); + FastqRead read881; read881.setName("M00967_44_000000000-A3K85_1_1102_13311_15099"); + read881.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGACTTGCAAGTCTGATGTGAAAATCCGGGGCCCAACCCCGGAACTGCATTGGAAACTGTATATCTAGAGTGTCGGAGAGGCAAGTGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read881.setScores(scores); + ffastqReads.push_back(read881); + FastqRead read882; read882.setName("M00967_44_000000000-A3K85_1_1102_29210_15181"); + read882.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read883.setScores(scores); + ffastqReads.push_back(read883); + FastqRead read884; read884.setName("M00967_44_000000000-A3K85_1_1102_20657_15222"); + read884.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read884.setScores(scores); + ffastqReads.push_back(read884); + FastqRead read885; read885.setName("M00967_44_000000000-A3K85_1_1102_13292_15250"); + read885.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTTCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTAATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(16); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(29); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); read885.setScores(scores); + ffastqReads.push_back(read885); + FastqRead read886; read886.setName("M00967_44_000000000-A3K85_1_1102_12198_15252"); + read886.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read886.setScores(scores); + ffastqReads.push_back(read886); + FastqRead read887; read887.setName("M00967_44_000000000-A3K85_1_1102_19635_15344"); + read887.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read887.setScores(scores); + ffastqReads.push_back(read887); + FastqRead read888; read888.setName("M00967_44_000000000-A3K85_1_1102_19313_15367"); + read888.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGCGTGGCAAGTCAGATGTGAAAACCCGGGGCCCAACCCCGGGACTGCATTTGAAACTGCCATGCTGGAGTGCCGGAGAGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGGAGGCGGCTTGCTGGACGGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); read888.setScores(scores); + ffastqReads.push_back(read888); + FastqRead read889; read889.setName("M00967_44_000000000-A3K85_1_1102_19822_15453"); + read889.setSeq("TACGGAGGATGCGAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGAACTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTAACTGACGCTGAAGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); read889.setScores(scores); + ffastqReads.push_back(read889); + FastqRead read890; read890.setName("M00967_44_000000000-A3K85_1_1102_27169_15505"); + read890.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); read890.setScores(scores); + ffastqReads.push_back(read890); + FastqRead read891; read891.setName("M00967_44_000000000-A3K85_1_1102_21855_15534"); + read891.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read891.setScores(scores); + ffastqReads.push_back(read891); + FastqRead read892; read892.setName("M00967_44_000000000-A3K85_1_1102_6891_15634"); + read892.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGACCAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); read892.setScores(scores); + ffastqReads.push_back(read892); + FastqRead read893; read893.setName("M00967_44_000000000-A3K85_1_1102_6633_15660"); + read893.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read893.setScores(scores); + ffastqReads.push_back(read893); + FastqRead read894; read894.setName("M00967_44_000000000-A3K85_1_1102_28366_15663"); + read894.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read894.setScores(scores); + ffastqReads.push_back(read894); + FastqRead read895; read895.setName("M00967_44_000000000-A3K85_1_1102_28349_15663"); + read895.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGCGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGGCATTGGGAACTGGTTGACTTGAGTGCAGAAGGGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(17); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(39); 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scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read895.setScores(scores); + ffastqReads.push_back(read895); + FastqRead read896; read896.setName("M00967_44_000000000-A3K85_1_1102_16877_15696"); + read896.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read896.setScores(scores); + ffastqReads.push_back(read896); + FastqRead read897; read897.setName("M00967_44_000000000-A3K85_1_1102_7809_15711"); + read897.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read897.setScores(scores); + ffastqReads.push_back(read897); + FastqRead read898; read898.setName("M00967_44_000000000-A3K85_1_1102_21863_15765"); + read898.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(13); read898.setScores(scores); + ffastqReads.push_back(read898); + FastqRead read899; read899.setName("M00967_44_000000000-A3K85_1_1102_14205_15790"); + read899.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGGAGTAGTGCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAAGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTAACTGACGCTGAGGTTCGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read899.setScores(scores); + ffastqReads.push_back(read899); + FastqRead read900; read900.setName("M00967_44_000000000-A3K85_1_1102_25773_15893"); + read900.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read900.setScores(scores); + ffastqReads.push_back(read900); + FastqRead read901; read901.setName("M00967_44_000000000-A3K85_1_1102_24965_15923"); + read901.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read901.setScores(scores); + ffastqReads.push_back(read901); + FastqRead read902; read902.setName("M00967_44_000000000-A3K85_1_1102_20834_15961"); + read902.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGATTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read902.setScores(scores); + ffastqReads.push_back(read902); + FastqRead read903; read903.setName("M00967_44_000000000-A3K85_1_1102_19985_15992"); + read903.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read903.setScores(scores); + ffastqReads.push_back(read903); + FastqRead read904; read904.setName("M00967_44_000000000-A3K85_1_1102_11369_16089"); + read904.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(37); read904.setScores(scores); + ffastqReads.push_back(read904); + FastqRead read905; read905.setName("M00967_44_000000000-A3K85_1_1102_22679_16128"); + read905.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read905.setScores(scores); + ffastqReads.push_back(read905); + FastqRead read906; read906.setName("M00967_44_000000000-A3K85_1_1102_18981_16151"); + read906.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read906.setScores(scores); + ffastqReads.push_back(read906); + FastqRead read907; read907.setName("M00967_44_000000000-A3K85_1_1102_16043_16162"); + read907.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); read907.setScores(scores); + ffastqReads.push_back(read907); + FastqRead read908; read908.setName("M00967_44_000000000-A3K85_1_1102_18799_16229"); + read908.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read909; read909.setName("M00967_44_000000000-A3K85_1_1102_17039_16259"); + read909.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read909.setScores(scores); + ffastqReads.push_back(read909); + FastqRead read910; read910.setName("M00967_44_000000000-A3K85_1_1102_7389_16283"); + read910.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read910.setScores(scores); + ffastqReads.push_back(read910); + FastqRead read911; read911.setName("M00967_44_000000000-A3K85_1_1102_7375_16297"); + read911.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read911.setScores(scores); + ffastqReads.push_back(read911); + FastqRead read912; read912.setName("M00967_44_000000000-A3K85_1_1102_26496_16334"); + read912.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read912.setScores(scores); + ffastqReads.push_back(read912); + FastqRead read913; read913.setName("M00967_44_000000000-A3K85_1_1102_11507_16364"); + read913.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(33); read913.setScores(scores); + ffastqReads.push_back(read913); + FastqRead read914; read914.setName("M00967_44_000000000-A3K85_1_1102_23904_16480"); + read914.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACCGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read914.setScores(scores); + ffastqReads.push_back(read914); + FastqRead read915; read915.setName("M00967_44_000000000-A3K85_1_1102_14880_16547"); + read915.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGAACTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGGGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTAAATGACGCTGAAGCACGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(30); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read915.setScores(scores); + ffastqReads.push_back(read915); + FastqRead read916; read916.setName("M00967_44_000000000-A3K85_1_1102_9262_16559"); + read916.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); read916.setScores(scores); + ffastqReads.push_back(read916); + FastqRead read917; read917.setName("M00967_44_000000000-A3K85_1_1102_11075_16577"); + read917.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGGGGGAAGTGGAATTCCATGTGTAGCGGGGAAATGCGTAGGGATTTGGAGGAAACCCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACCCTGAGGGGCGAAAGCGGGGGGGGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(35); scores.push_back(29); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(27); scores.push_back(29); scores.push_back(17); scores.push_back(16); scores.push_back(31); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); read917.setScores(scores); + ffastqReads.push_back(read917); + FastqRead read918; read918.setName("M00967_44_000000000-A3K85_1_1102_22601_16617"); + read918.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read918.setScores(scores); + ffastqReads.push_back(read918); + FastqRead read919; read919.setName("M00967_44_000000000-A3K85_1_1102_10672_16660"); + read919.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read919.setScores(scores); + ffastqReads.push_back(read919); + FastqRead read920; read920.setName("M00967_44_000000000-A3K85_1_1102_25954_16670"); + read920.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(32); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(39); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read920.setScores(scores); + ffastqReads.push_back(read920); + FastqRead read921; read921.setName("M00967_44_000000000-A3K85_1_1102_7434_16732"); + read921.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(37); read921.setScores(scores); + ffastqReads.push_back(read921); + FastqRead read922; read922.setName("M00967_44_000000000-A3K85_1_1102_25966_16739"); + read922.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read922.setScores(scores); + ffastqReads.push_back(read922); + FastqRead read923; read923.setName("M00967_44_000000000-A3K85_1_1102_10993_16770"); + read923.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCCAGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(28); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(27); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); read923.setScores(scores); + ffastqReads.push_back(read923); + FastqRead read924; read924.setName("M00967_44_000000000-A3K85_1_1102_18477_16801"); + read924.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read925.setScores(scores); + ffastqReads.push_back(read925); + FastqRead read926; read926.setName("M00967_44_000000000-A3K85_1_1102_3847_16863"); + read926.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read926.setScores(scores); + ffastqReads.push_back(read926); + FastqRead read927; read927.setName("M00967_44_000000000-A3K85_1_1102_4873_16910"); + read927.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCACGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(15); scores.push_back(32); 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scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); read927.setScores(scores); + ffastqReads.push_back(read927); + FastqRead read928; read928.setName("M00967_44_000000000-A3K85_1_1102_5858_16910"); + read928.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCGCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read928.setScores(scores); + ffastqReads.push_back(read928); + FastqRead read929; read929.setName("M00967_44_000000000-A3K85_1_1102_6208_17039"); + read929.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read929.setScores(scores); + ffastqReads.push_back(read929); + FastqRead read930; read930.setName("M00967_44_000000000-A3K85_1_1102_24668_17079"); + read930.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGAAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read930.setScores(scores); + ffastqReads.push_back(read930); + FastqRead read931; read931.setName("M00967_44_000000000-A3K85_1_1102_15585_17084"); + read931.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read931.setScores(scores); + ffastqReads.push_back(read931); + FastqRead read932; read932.setName("M00967_44_000000000-A3K85_1_1102_9672_17086"); + read932.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGTAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read932.setScores(scores); + ffastqReads.push_back(read932); + FastqRead read933; read933.setName("M00967_44_000000000-A3K85_1_1102_18472_17092"); + read933.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGCGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGGTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read933.setScores(scores); + ffastqReads.push_back(read933); + FastqRead read934; read934.setName("M00967_44_000000000-A3K85_1_1102_3835_17118"); + read934.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read934.setScores(scores); + ffastqReads.push_back(read934); + FastqRead read935; read935.setName("M00967_44_000000000-A3K85_1_1102_25555_17242"); + read935.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); read935.setScores(scores); + ffastqReads.push_back(read935); + FastqRead read936; read936.setName("M00967_44_000000000-A3K85_1_1102_14017_17269"); + read936.setSeq("TACGGAGGATTCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTCGATAAGTTAGAGGTGAAATCCCGGGGCTCAACTCCGGCACTGCCTCTGATACTGTCGGGCTAGAGTTTAGTTGCGGTAGGCGGAATGTATGGTGTAGCGGTGAAATGCATAGAGATCATACAGAACACCGATTGCGAAGGCAGCTTACCAAACTACGACTGACGTTGAGGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read936.setScores(scores); + ffastqReads.push_back(read936); + FastqRead read937; read937.setName("M00967_44_000000000-A3K85_1_1102_3681_17285"); + read937.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGCCGCTGCGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(29); scores.push_back(28); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(29); scores.push_back(29); scores.push_back(28); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read937.setScores(scores); + ffastqReads.push_back(read937); + FastqRead read938; read938.setName("M00967_44_000000000-A3K85_1_1102_22878_17371"); + read938.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read938.setScores(scores); + ffastqReads.push_back(read938); + FastqRead read939; read939.setName("M00967_44_000000000-A3K85_1_1102_4487_17392"); + read939.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read939.setScores(scores); + ffastqReads.push_back(read939); + FastqRead read940; read940.setName("M00967_44_000000000-A3K85_1_1102_19830_17397"); + read940.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); read940.setScores(scores); + ffastqReads.push_back(read940); + FastqRead read941; read941.setName("M00967_44_000000000-A3K85_1_1102_9893_17520"); + read941.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read941.setScores(scores); + ffastqReads.push_back(read941); + FastqRead read942; read942.setName("M00967_44_000000000-A3K85_1_1102_16915_17547"); + read942.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read942.setScores(scores); + ffastqReads.push_back(read942); + FastqRead read943; read943.setName("M00967_44_000000000-A3K85_1_1102_29077_17547"); + read943.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read943.setScores(scores); + ffastqReads.push_back(read943); + FastqRead read944; read944.setName("M00967_44_000000000-A3K85_1_1102_26081_17551"); + read944.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read944.setScores(scores); + ffastqReads.push_back(read944); + FastqRead read945; read945.setName("M00967_44_000000000-A3K85_1_1102_17835_17586"); + read945.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTCCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); read945.setScores(scores); + ffastqReads.push_back(read945); + FastqRead read946; read946.setName("M00967_44_000000000-A3K85_1_1102_19515_17750"); + read946.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(28); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); read946.setScores(scores); + ffastqReads.push_back(read946); + FastqRead read947; read947.setName("M00967_44_000000000-A3K85_1_1102_25712_17791"); + read947.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGATCGAACA"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); read947.setScores(scores); + ffastqReads.push_back(read947); + FastqRead read948; read948.setName("M00967_44_000000000-A3K85_1_1102_21715_17857"); + read948.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); read948.setScores(scores); + ffastqReads.push_back(read948); + FastqRead read949; read949.setName("M00967_44_000000000-A3K85_1_1102_11676_17880"); + read949.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read949.setScores(scores); + ffastqReads.push_back(read949); + FastqRead read950; read950.setName("M00967_44_000000000-A3K85_1_1102_20324_17896"); + read950.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGATGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read951; read951.setName("M00967_44_000000000-A3K85_1_1102_2950_17933"); + read951.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); read951.setScores(scores); + ffastqReads.push_back(read951); + FastqRead read952; read952.setName("M00967_44_000000000-A3K85_1_1102_2931_17933"); + read952.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read952.setScores(scores); + ffastqReads.push_back(read952); + FastqRead read953; read953.setName("M00967_44_000000000-A3K85_1_1102_21075_18003"); + read953.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read953.setScores(scores); + ffastqReads.push_back(read953); + FastqRead read954; read954.setName("M00967_44_000000000-A3K85_1_1102_6223_18022"); + read954.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); read954.setScores(scores); + ffastqReads.push_back(read954); + FastqRead read955; read955.setName("M00967_44_000000000-A3K85_1_1102_25433_18075"); + read955.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(15); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); read955.setScores(scores); + ffastqReads.push_back(read955); + FastqRead read956; read956.setName("M00967_44_000000000-A3K85_1_1102_27248_18103"); + read956.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read956.setScores(scores); + ffastqReads.push_back(read956); + FastqRead read957; read957.setName("M00967_44_000000000-A3K85_1_1102_11734_18128"); + read957.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read957.setScores(scores); + ffastqReads.push_back(read957); + FastqRead read958; read958.setName("M00967_44_000000000-A3K85_1_1102_19017_18139"); + read958.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCAGTGCAAGTCTGGAGTGAAAGCCCGGGGCCCAACCCCGGAACTGCTCTGGAAACTGTGCGGCTAGAGTACTGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read958.setScores(scores); + ffastqReads.push_back(read958); + FastqRead read959; read959.setName("M00967_44_000000000-A3K85_1_1102_26800_18141"); + read959.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read959.setScores(scores); + ffastqReads.push_back(read959); + FastqRead read960; read960.setName("M00967_44_000000000-A3K85_1_1102_24835_18161"); + read960.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read960.setScores(scores); + ffastqReads.push_back(read960); + FastqRead read961; read961.setName("M00967_44_000000000-A3K85_1_1102_24787_18170"); + read961.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read961.setScores(scores); + ffastqReads.push_back(read961); + FastqRead read962; read962.setName("M00967_44_000000000-A3K85_1_1102_24447_18176"); + read962.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGTCTGAAGTGAAAGCCCAGGGCTCAACCCTGGGACTGCTTTGGAAACTGTGGAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read962.setScores(scores); + ffastqReads.push_back(read962); + FastqRead read963; read963.setName("M00967_44_000000000-A3K85_1_1102_22054_18259"); + read963.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read963.setScores(scores); + ffastqReads.push_back(read963); + FastqRead read964; read964.setName("M00967_44_000000000-A3K85_1_1102_24133_18275"); + read964.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read964.setScores(scores); + ffastqReads.push_back(read964); + FastqRead read965; read965.setName("M00967_44_000000000-A3K85_1_1102_9758_18442"); + read965.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCTTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCATGAACTGCTTTTGAAACTGCAGAGCTTGAGTGGAGTAGAGGTAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTCTAACTGACGCTGAGGCACGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read965.setScores(scores); + ffastqReads.push_back(read965); + FastqRead read966; read966.setName("M00967_44_000000000-A3K85_1_1102_4793_18443"); + read966.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(17); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(26); scores.push_back(28); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(12); read967.setScores(scores); + ffastqReads.push_back(read967); + FastqRead read968; read968.setName("M00967_44_000000000-A3K85_1_1102_27817_18466"); + read968.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read968.setScores(scores); + ffastqReads.push_back(read968); + FastqRead read969; read969.setName("M00967_44_000000000-A3K85_1_1102_14412_18629"); + read969.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCCATGCAAGTCAGAAGTGAAAACCCGGGGCTCAACCCTGGGAGTGCTTTTGAAACTGTGCGGCTAGAGTGTCGGAGGGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGATGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(25); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read969.setScores(scores); + ffastqReads.push_back(read969); + FastqRead read970; read970.setName("M00967_44_000000000-A3K85_1_1102_23956_18630"); + read970.setSeq("TACGGAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read970.setScores(scores); + ffastqReads.push_back(read970); + FastqRead read971; read971.setName("M00967_44_000000000-A3K85_1_1102_17766_18634"); + read971.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read971.setScores(scores); + ffastqReads.push_back(read971); + FastqRead read972; read972.setName("M00967_44_000000000-A3K85_1_1102_19199_18689"); + read972.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read972.setScores(scores); + ffastqReads.push_back(read972); + FastqRead read973; read973.setName("M00967_44_000000000-A3K85_1_1102_5933_18693"); + read973.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGAACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(18); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(16); 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scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(28); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(37); read973.setScores(scores); + ffastqReads.push_back(read973); + FastqRead read974; read974.setName("M00967_44_000000000-A3K85_1_1102_16063_18696"); + read974.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read974.setScores(scores); + ffastqReads.push_back(read974); + FastqRead read975; read975.setName("M00967_44_000000000-A3K85_1_1102_10569_18728"); + read975.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read975.setScores(scores); + ffastqReads.push_back(read975); + FastqRead read976; read976.setName("M00967_44_000000000-A3K85_1_1102_3883_18758"); + read976.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read976.setScores(scores); + ffastqReads.push_back(read976); + FastqRead read977; read977.setName("M00967_44_000000000-A3K85_1_1102_22275_18771"); + read977.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGTGTAAAGGGAGCGTAGACGGCCATGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGCGACTGACGTTGAGGCTCGGAAGCGTGGGGAGCGAACA"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); read977.setScores(scores); + ffastqReads.push_back(read977); + FastqRead read978; read978.setName("M00967_44_000000000-A3K85_1_1102_22265_18787"); + read978.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGTGTAAAGGGAGCGTAGACGGCCATGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGCGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read978.setScores(scores); + ffastqReads.push_back(read978); + FastqRead read979; read979.setName("M00967_44_000000000-A3K85_1_1102_10355_18792"); + read979.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(24); read979.setScores(scores); + ffastqReads.push_back(read979); + FastqRead read980; read980.setName("M00967_44_000000000-A3K85_1_1102_5229_18807"); + read980.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read980.setScores(scores); + ffastqReads.push_back(read980); + FastqRead read981; read981.setName("M00967_44_000000000-A3K85_1_1102_15805_18840"); + read981.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read981.setScores(scores); + ffastqReads.push_back(read981); + FastqRead read982; read982.setName("M00967_44_000000000-A3K85_1_1102_13840_18879"); + read982.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read982.setScores(scores); + ffastqReads.push_back(read982); + FastqRead read983; read983.setName("M00967_44_000000000-A3K85_1_1102_16324_18880"); + read983.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read983.setScores(scores); + ffastqReads.push_back(read983); + FastqRead read984; read984.setName("M00967_44_000000000-A3K85_1_1102_9946_18912"); + read984.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGGGTAGCGGTGGAATGCGGAGATATATGGAAGAAAACCAGTGGCGAAGGCGGCTCTCTGGGCTGCAACTGACGCTGAGGCTCGAAAGCATGGGGAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(35); scores.push_back(13); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); read984.setScores(scores); + ffastqReads.push_back(read984); + FastqRead read985; read985.setName("M00967_44_000000000-A3K85_1_1102_11977_18919"); + read985.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGGAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read985.setScores(scores); + ffastqReads.push_back(read985); + FastqRead read986; read986.setName("M00967_44_000000000-A3K85_1_1102_9422_18920"); + read986.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGGATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(29); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); read986.setScores(scores); + ffastqReads.push_back(read986); + FastqRead read987; read987.setName("M00967_44_000000000-A3K85_1_1102_16791_18947"); + read987.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read987.setScores(scores); + ffastqReads.push_back(read987); + FastqRead read988; read988.setName("M00967_44_000000000-A3K85_1_1102_27084_19000"); + read988.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read988.setScores(scores); + ffastqReads.push_back(read988); + FastqRead read989; read989.setName("M00967_44_000000000-A3K85_1_1102_9210_19049"); + read989.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); read990.setScores(scores); + ffastqReads.push_back(read990); + FastqRead read991; read991.setName("M00967_44_000000000-A3K85_1_1102_15663_19295"); + read991.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(14); read991.setScores(scores); + ffastqReads.push_back(read991); + FastqRead read992; read992.setName("M00967_44_000000000-A3K85_1_1102_13914_19476"); + read992.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read992.setScores(scores); + ffastqReads.push_back(read992); + FastqRead read993; read993.setName("M00967_44_000000000-A3K85_1_1102_6043_19507"); + read993.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read993.setScores(scores); + ffastqReads.push_back(read993); + FastqRead read994; read994.setName("M00967_44_000000000-A3K85_1_1102_8436_19521"); + read994.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read994.setScores(scores); + ffastqReads.push_back(read994); + FastqRead read995; read995.setName("M00967_44_000000000-A3K85_1_1102_21194_19609"); + read995.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCCGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGAAGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); read995.setScores(scores); + ffastqReads.push_back(read995); + FastqRead read996; read996.setName("M00967_44_000000000-A3K85_1_1102_24547_19628"); + read996.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read996.setScores(scores); + ffastqReads.push_back(read996); + FastqRead read997; read997.setName("M00967_44_000000000-A3K85_1_1102_20928_19647"); + read997.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read997.setScores(scores); + ffastqReads.push_back(read997); + FastqRead read998; read998.setName("M00967_44_000000000-A3K85_1_1102_3267_19763"); + read998.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCAGGCGGAAGAACAAGTCTGATGTAAAATTCATAGGCTCAACCGGTGAGATGCGTTAAAAATTGTTTTACTTAGGGAGCGAAAAGGATGCGGGAACCCCGTTGGAAGGGGGAGATTCAGAAGTATTACGCAGAACTACCAGTGGGGAAGGAGCATCCCGGGGCTCCACCGACGCTCAAGGACGGAAAGCATGGGATCGGAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(31); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(27); scores.push_back(32); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read998.setScores(scores); + ffastqReads.push_back(read998); + FastqRead read999; read999.setName("M00967_44_000000000-A3K85_1_1102_3266_19785"); + read999.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGTGAGTGGAAATCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(19); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(16); scores.push_back(29); scores.push_back(18); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(18); scores.push_back(30); scores.push_back(18); scores.push_back(19); scores.push_back(33); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(18); 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scores.push_back(35); scores.push_back(27); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(27); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(27); scores.push_back(14); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); read999.setScores(scores); + ffastqReads.push_back(read999); + FastqRead read1000; read1000.setName("M00967_44_000000000-A3K85_1_1102_16073_19847"); + read1000.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1000.setScores(scores); + ffastqReads.push_back(read1000); + FastqRead read1001; read1001.setName("M00967_44_000000000-A3K85_1_1102_11268_19864"); + read1001.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1001.setScores(scores); + ffastqReads.push_back(read1001); + FastqRead read1002; read1002.setName("M00967_44_000000000-A3K85_1_1102_28020_19877"); + read1002.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCAGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCGGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); read1002.setScores(scores); + ffastqReads.push_back(read1002); + FastqRead read1003; read1003.setName("M00967_44_000000000-A3K85_1_1102_22198_19923"); + read1003.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1003.setScores(scores); + ffastqReads.push_back(read1003); + FastqRead read1004; read1004.setName("M00967_44_000000000-A3K85_1_1102_19372_19984"); + read1004.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(18); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(18); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(28); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(12); read1004.setScores(scores); + ffastqReads.push_back(read1004); + FastqRead read1005; read1005.setName("M00967_44_000000000-A3K85_1_1102_26397_20010"); + read1005.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1005.setScores(scores); + ffastqReads.push_back(read1005); + FastqRead read1006; read1006.setName("M00967_44_000000000-A3K85_1_1102_21846_20050"); + read1006.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1006.setScores(scores); + ffastqReads.push_back(read1006); + FastqRead read1007; read1007.setName("M00967_44_000000000-A3K85_1_1102_12005_20077"); + read1007.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1007.setScores(scores); + ffastqReads.push_back(read1007); + FastqRead read1008; read1008.setName("M00967_44_000000000-A3K85_1_1102_19622_20085"); + read1008.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1008.setScores(scores); + ffastqReads.push_back(read1008); + FastqRead read1009; read1009.setName("M00967_44_000000000-A3K85_1_1102_3447_20101"); + read1009.setSeq("TACGTAGGCGGCAAGCGTTATCCGGATTTACTGGGTGTAACGGGAGCGTAGACGGTGATGCAAGTCAGAAGTGAAAGCCCGCGGCTCAACTGCGGGACTGCTTTTGAAACTGTATGACTAGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); read1009.setScores(scores); + ffastqReads.push_back(read1009); + FastqRead read1010; read1010.setName("M00967_44_000000000-A3K85_1_1102_9551_20106"); + read1010.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1010.setScores(scores); + ffastqReads.push_back(read1010); + FastqRead read1011; read1011.setName("M00967_44_000000000-A3K85_1_1102_14497_20110"); + read1011.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1011.setScores(scores); + ffastqReads.push_back(read1011); + FastqRead read1012; read1012.setName("M00967_44_000000000-A3K85_1_1102_4075_20122"); + read1012.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGGGAGGCGCGAAAGCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(28); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1012.setScores(scores); + ffastqReads.push_back(read1012); + FastqRead read1013; read1013.setName("M00967_44_000000000-A3K85_1_1102_6032_20234"); + read1013.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); read1013.setScores(scores); + ffastqReads.push_back(read1013); + FastqRead read1014; read1014.setName("M00967_44_000000000-A3K85_1_1102_27026_20298"); + read1014.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1014.setScores(scores); + ffastqReads.push_back(read1014); + FastqRead read1015; read1015.setName("M00967_44_000000000-A3K85_1_1102_5988_20325"); + read1015.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1015.setScores(scores); + ffastqReads.push_back(read1015); + FastqRead read1016; read1016.setName("M00967_44_000000000-A3K85_1_1102_22449_20349"); + read1016.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1016.setScores(scores); + ffastqReads.push_back(read1016); + FastqRead read1017; read1017.setName("M00967_44_000000000-A3K85_1_1102_3060_20455"); + read1017.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGNCTTGAGTGCGCGNNNNGNAGGCGGAATGCGAGGTGTAGCGGTGANATGNATAGANATNNCNNNGNACTCNGNTNNNNNNGGCAGCCTACCGGNGCGCAACTGACGCTCATGCANGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(2); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(2); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(2); scores.push_back(26); scores.push_back(13); scores.push_back(2); scores.push_back(2); scores.push_back(13); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(25); scores.push_back(2); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(2); scores.push_back(24); scores.push_back(2); scores.push_back(26); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(2); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(2); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); read1017.setScores(scores); + ffastqReads.push_back(read1017); + FastqRead read1018; read1018.setName("M00967_44_000000000-A3K85_1_1102_3172_20517"); + read1018.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); read1018.setScores(scores); + ffastqReads.push_back(read1018); + FastqRead read1019; read1019.setName("M00967_44_000000000-A3K85_1_1102_9791_20536"); + read1019.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1019.setScores(scores); + ffastqReads.push_back(read1019); + FastqRead read1020; read1020.setName("M00967_44_000000000-A3K85_1_1102_16986_20592"); + read1020.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1020.setScores(scores); + ffastqReads.push_back(read1020); + FastqRead read1021; read1021.setName("M00967_44_000000000-A3K85_1_1102_6870_20620"); + read1021.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(26); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); read1021.setScores(scores); + ffastqReads.push_back(read1021); + FastqRead read1022; read1022.setName("M00967_44_000000000-A3K85_1_1102_24420_20639"); + read1022.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1022.setScores(scores); + ffastqReads.push_back(read1022); + FastqRead read1023; read1023.setName("M00967_44_000000000-A3K85_1_1102_23758_20700"); + read1023.setSeq("TACGGGGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); read1023.setScores(scores); + ffastqReads.push_back(read1023); + FastqRead read1024; read1024.setName("M00967_44_000000000-A3K85_1_1102_4777_20795"); + read1024.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1024.setScores(scores); + ffastqReads.push_back(read1024); + FastqRead read1025; read1025.setName("M00967_44_000000000-A3K85_1_1102_12289_20824"); + read1025.setSeq("TACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGAGTGTAGGCGGCTTAATAAGTTAGATGTGAAATCCCGCGGCTCAACCGCGGAACTGCATCTAAAACTGTTGAGCTGGAGTGCAGGAGAGGTGAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGACTCACTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1025.setScores(scores); + ffastqReads.push_back(read1025); + FastqRead read1026; read1026.setName("M00967_44_000000000-A3K85_1_1102_21306_20842"); + read1026.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTGAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1026.setScores(scores); + ffastqReads.push_back(read1026); + FastqRead read1027; read1027.setName("M00967_44_000000000-A3K85_1_1102_14196_20858"); + read1027.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1027.setScores(scores); + ffastqReads.push_back(read1027); + FastqRead read1028; read1028.setName("M00967_44_000000000-A3K85_1_1102_18567_20868"); + read1028.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1028.setScores(scores); + ffastqReads.push_back(read1028); + FastqRead read1029; read1029.setName("M00967_44_000000000-A3K85_1_1102_27885_20889"); + read1029.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); read1029.setScores(scores); + ffastqReads.push_back(read1029); + FastqRead read1030; read1030.setName("M00967_44_000000000-A3K85_1_1102_25374_20968"); + read1030.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1030.setScores(scores); + ffastqReads.push_back(read1030); + FastqRead read1031; read1031.setName("M00967_44_000000000-A3K85_1_1102_24500_21100"); + read1031.setSeq("TACGGAGGATGCGAGCGTTATCCGAATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1031.setScores(scores); + ffastqReads.push_back(read1031); + FastqRead read1032; read1032.setName("M00967_44_000000000-A3K85_1_1102_27048_21114"); + read1032.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1032.setScores(scores); + ffastqReads.push_back(read1032); + FastqRead read1033; read1033.setName("M00967_44_000000000-A3K85_1_1102_28192_21177"); + read1033.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1033.setScores(scores); + ffastqReads.push_back(read1033); + FastqRead read1034; read1034.setName("M00967_44_000000000-A3K85_1_1102_25103_21179"); + read1034.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1034.setScores(scores); + ffastqReads.push_back(read1034); + FastqRead read1035; read1035.setName("M00967_44_000000000-A3K85_1_1102_8157_21204"); + read1035.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGACAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(28); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); read1035.setScores(scores); + ffastqReads.push_back(read1035); + FastqRead read1036; read1036.setName("M00967_44_000000000-A3K85_1_1102_18285_21209"); + read1036.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1036.setScores(scores); + ffastqReads.push_back(read1036); + FastqRead read1037; read1037.setName("M00967_44_000000000-A3K85_1_1102_22860_21228"); + read1037.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(14); scores.push_back(27); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1037.setScores(scores); + ffastqReads.push_back(read1037); + FastqRead read1038; read1038.setName("M00967_44_000000000-A3K85_1_1102_7194_21269"); + read1038.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGGGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(28); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1038.setScores(scores); + ffastqReads.push_back(read1038); + FastqRead read1039; read1039.setName("M00967_44_000000000-A3K85_1_1102_14312_21295"); + read1039.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1039.setScores(scores); + ffastqReads.push_back(read1039); + FastqRead read1040; read1040.setName("M00967_44_000000000-A3K85_1_1102_25809_21308"); + read1040.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1040.setScores(scores); + ffastqReads.push_back(read1040); + FastqRead read1041; read1041.setName("M00967_44_000000000-A3K85_1_1102_26260_21334"); + read1041.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACATTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1041.setScores(scores); + ffastqReads.push_back(read1041); + FastqRead read1042; read1042.setName("M00967_44_000000000-A3K85_1_1102_18976_21369"); + read1042.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGGGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1042.setScores(scores); + ffastqReads.push_back(read1042); + FastqRead read1043; read1043.setName("M00967_44_000000000-A3K85_1_1102_15318_21462"); + read1043.setSeq("TACGGGGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAACGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1043.setScores(scores); + ffastqReads.push_back(read1043); + FastqRead read1044; read1044.setName("M00967_44_000000000-A3K85_1_1102_18981_21505"); + read1044.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAGGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1045.setScores(scores); + ffastqReads.push_back(read1045); + FastqRead read1046; read1046.setName("M00967_44_000000000-A3K85_1_1102_11081_21571"); + read1046.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1046.setScores(scores); + ffastqReads.push_back(read1046); + FastqRead read1047; read1047.setName("M00967_44_000000000-A3K85_1_1102_22433_21571"); + read1047.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTAGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read1047.setScores(scores); + ffastqReads.push_back(read1047); + FastqRead read1048; read1048.setName("M00967_44_000000000-A3K85_1_1102_18708_21614"); + read1048.setSeq("TACGGAGGATGCGAGCTTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1048.setScores(scores); + ffastqReads.push_back(read1048); + FastqRead read1049; read1049.setName("M00967_44_000000000-A3K85_1_1102_18021_21653"); + read1049.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1049.setScores(scores); + ffastqReads.push_back(read1049); + FastqRead read1050; read1050.setName("M00967_44_000000000-A3K85_1_1102_17869_21708"); + read1050.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1050.setScores(scores); + ffastqReads.push_back(read1050); + FastqRead read1051; read1051.setName("M00967_44_000000000-A3K85_1_1102_8662_21781"); + read1051.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTTAACCGCGGAACTGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1051.setScores(scores); + ffastqReads.push_back(read1051); + FastqRead read1052; read1052.setName("M00967_44_000000000-A3K85_1_1102_4992_21837"); + read1052.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1052.setScores(scores); + ffastqReads.push_back(read1052); + FastqRead read1053; read1053.setName("M00967_44_000000000-A3K85_1_1102_24752_21840"); + read1053.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1053.setScores(scores); + ffastqReads.push_back(read1053); + FastqRead read1054; read1054.setName("M00967_44_000000000-A3K85_1_1102_5013_21854"); + read1054.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1054.setScores(scores); + ffastqReads.push_back(read1054); + FastqRead read1055; read1055.setName("M00967_44_000000000-A3K85_1_1102_20106_21873"); + read1055.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1055.setScores(scores); + ffastqReads.push_back(read1055); + FastqRead read1056; read1056.setName("M00967_44_000000000-A3K85_1_1102_7412_21891"); + read1056.setSeq("TACGGAGGATGTGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1056.setScores(scores); + ffastqReads.push_back(read1056); + FastqRead read1057; read1057.setName("M00967_44_000000000-A3K85_1_1102_5554_21966"); + read1057.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1058.setScores(scores); + ffastqReads.push_back(read1058); + FastqRead read1059; read1059.setName("M00967_44_000000000-A3K85_1_1102_3929_22073"); + read1059.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(29); 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scores.push_back(13); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(26); read1059.setScores(scores); + ffastqReads.push_back(read1059); + FastqRead read1060; read1060.setName("M00967_44_000000000-A3K85_1_1102_26240_22075"); + read1060.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); read1060.setScores(scores); + ffastqReads.push_back(read1060); + FastqRead read1061; read1061.setName("M00967_44_000000000-A3K85_1_1102_9243_22093"); + read1061.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(19); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1061.setScores(scores); + ffastqReads.push_back(read1061); + FastqRead read1062; read1062.setName("M00967_44_000000000-A3K85_1_1102_8344_22128"); + read1062.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(33); read1062.setScores(scores); + ffastqReads.push_back(read1062); + FastqRead read1063; read1063.setName("M00967_44_000000000-A3K85_1_1102_8333_22144"); + read1063.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1063.setScores(scores); + ffastqReads.push_back(read1063); + FastqRead read1064; read1064.setName("M00967_44_000000000-A3K85_1_1102_18941_22172"); + read1064.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1064.setScores(scores); + ffastqReads.push_back(read1064); + FastqRead read1065; read1065.setName("M00967_44_000000000-A3K85_1_1102_25780_22224"); + read1065.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1065.setScores(scores); + ffastqReads.push_back(read1065); + FastqRead read1066; read1066.setName("M00967_44_000000000-A3K85_1_1102_5765_22247"); + read1066.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCTAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); 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scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(26); read1066.setScores(scores); + ffastqReads.push_back(read1066); + FastqRead read1067; read1067.setName("M00967_44_000000000-A3K85_1_1102_17751_22352"); + read1067.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1067.setScores(scores); + ffastqReads.push_back(read1067); + FastqRead read1068; read1068.setName("M00967_44_000000000-A3K85_1_1102_20673_22359"); + read1068.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read1068.setScores(scores); + ffastqReads.push_back(read1068); + FastqRead read1069; read1069.setName("M00967_44_000000000-A3K85_1_1102_15403_22447"); + read1069.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1069.setScores(scores); + ffastqReads.push_back(read1069); + FastqRead read1070; read1070.setName("M00967_44_000000000-A3K85_1_1102_21249_22495"); + read1070.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1070.setScores(scores); + ffastqReads.push_back(read1070); + FastqRead read1071; read1071.setName("M00967_44_000000000-A3K85_1_1102_4593_22583"); + read1071.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1071.setScores(scores); + ffastqReads.push_back(read1071); + FastqRead read1072; read1072.setName("M00967_44_000000000-A3K85_1_1102_14601_22624"); + read1072.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGGGAACGCAGGCGGTCTTTTAAGTCTGATGTGAAAGCCTTCGGCTTAACCGGAGTAGTGCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAAGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTAACTGACGCTGAGGTTCGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1072.setScores(scores); + ffastqReads.push_back(read1072); + FastqRead read1073; read1073.setName("M00967_44_000000000-A3K85_1_1102_12426_22650"); + read1073.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1073.setScores(scores); + ffastqReads.push_back(read1073); + FastqRead read1074; read1074.setName("M00967_44_000000000-A3K85_1_1102_15465_22754"); + read1074.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); read1074.setScores(scores); + ffastqReads.push_back(read1074); + FastqRead read1075; read1075.setName("M00967_44_000000000-A3K85_1_1102_14002_22779"); + read1075.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1075.setScores(scores); + ffastqReads.push_back(read1075); + FastqRead read1076; read1076.setName("M00967_44_000000000-A3K85_1_1102_20272_22873"); + read1076.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1076.setScores(scores); + ffastqReads.push_back(read1076); + FastqRead read1077; read1077.setName("M00967_44_000000000-A3K85_1_1102_26910_22888"); + read1077.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACCGGGTGTAAAGGGAGCGCAGGCGGTACGGCAAGTCTGATGTGAAAGCCCAGGGCTCAACCCTGGTACTGCATTGGAAACTGCCGGACTAGAGTGTCGGAGGGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGATGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1077.setScores(scores); + ffastqReads.push_back(read1077); + FastqRead read1078; read1078.setName("M00967_44_000000000-A3K85_1_1102_4834_22982"); + read1078.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(14); scores.push_back(31); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(34); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1078.setScores(scores); + ffastqReads.push_back(read1078); + FastqRead read1079; read1079.setName("M00967_44_000000000-A3K85_1_1102_4636_23047"); + read1079.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGACTGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(33); read1079.setScores(scores); + ffastqReads.push_back(read1079); + FastqRead read1080; read1080.setName("M00967_44_000000000-A3K85_1_1102_4625_23064"); + read1080.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1081.setScores(scores); + ffastqReads.push_back(read1081); + FastqRead read1082; read1082.setName("M00967_44_000000000-A3K85_1_1102_13886_23203"); + read1082.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGTGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1082.setScores(scores); + ffastqReads.push_back(read1082); + FastqRead read1083; read1083.setName("M00967_44_000000000-A3K85_1_1102_20092_23221"); + read1083.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1083.setScores(scores); + ffastqReads.push_back(read1083); + FastqRead read1084; read1084.setName("M00967_44_000000000-A3K85_1_1102_11032_23275"); + read1084.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCTGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1084.setScores(scores); + ffastqReads.push_back(read1084); + FastqRead read1085; read1085.setName("M00967_44_000000000-A3K85_1_1102_7507_23467"); + read1085.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1085.setScores(scores); + ffastqReads.push_back(read1085); + FastqRead read1086; read1086.setName("M00967_44_000000000-A3K85_1_1102_20659_23537"); + read1086.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1087.setScores(scores); + ffastqReads.push_back(read1087); + FastqRead read1088; read1088.setName("M00967_44_000000000-A3K85_1_1102_26321_23799"); + read1088.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1088.setScores(scores); + ffastqReads.push_back(read1088); + FastqRead read1089; read1089.setName("M00967_44_000000000-A3K85_1_1102_24496_23889"); + read1089.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACCCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(29); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); read1089.setScores(scores); + ffastqReads.push_back(read1089); + FastqRead read1090; read1090.setName("M00967_44_000000000-A3K85_1_1102_16567_23895"); + read1090.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1090.setScores(scores); + ffastqReads.push_back(read1090); + FastqRead read1091; read1091.setName("M00967_44_000000000-A3K85_1_1102_24512_23900"); + read1091.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); read1091.setScores(scores); + ffastqReads.push_back(read1091); + FastqRead read1092; read1092.setName("M00967_44_000000000-A3K85_1_1102_16086_23959"); + read1092.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1092.setScores(scores); + ffastqReads.push_back(read1092); + FastqRead read1093; read1093.setName("M00967_44_000000000-A3K85_1_1102_8482_24022"); + read1093.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGGGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); read1093.setScores(scores); + ffastqReads.push_back(read1093); + FastqRead read1094; read1094.setName("M00967_44_000000000-A3K85_1_1102_11858_24136"); + read1094.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1094.setScores(scores); + ffastqReads.push_back(read1094); + FastqRead read1095; read1095.setName("M00967_44_000000000-A3K85_1_1102_13824_24154"); + read1095.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGGACGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1095.setScores(scores); + ffastqReads.push_back(read1095); + FastqRead read1096; read1096.setName("M00967_44_000000000-A3K85_1_1102_5948_24254"); + read1096.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCCGAATTCCTAGGGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCAGCTCACTGGACCGCAACTGACACTGATGCTCGAAAGTGTGGGGATCACACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(16); scores.push_back(31); scores.push_back(34); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); 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scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); read1096.setScores(scores); + ffastqReads.push_back(read1096); + FastqRead read1097; read1097.setName("M00967_44_000000000-A3K85_1_1102_21019_24358"); + read1097.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGGGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGGGGCTCGAAAGCATGGGTAGCGAAAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(20); scores.push_back(38); scores.push_back(36); scores.push_back(19); scores.push_back(19); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(16); scores.push_back(29); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(31); scores.push_back(29); scores.push_back(15); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(15); scores.push_back(14); scores.push_back(30); scores.push_back(32); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read1097.setScores(scores); + ffastqReads.push_back(read1097); + FastqRead read1098; read1098.setName("M00967_44_000000000-A3K85_1_1102_13309_24380"); + read1098.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1098.setScores(scores); + ffastqReads.push_back(read1098); + FastqRead read1099; read1099.setName("M00967_44_000000000-A3K85_1_1102_12374_24394"); + read1099.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGGAACTGGTTTTCTTGAGGGAGCGAGAAGTATGCGGAATGCGTGGTGGAGCGGTTAAATGGATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGGGCTCAACTGACGGTCATGCACGAAAAGCGGGGGATCGAAAAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(16); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); read1099.setScores(scores); + ffastqReads.push_back(read1099); + FastqRead read1100; read1100.setName("M00967_44_000000000-A3K85_1_1102_19925_24400"); + read1100.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1100.setScores(scores); + ffastqReads.push_back(read1100); + FastqRead read1101; read1101.setName("M00967_44_000000000-A3K85_1_1102_13018_24459"); + read1101.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGGTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(30); scores.push_back(27); scores.push_back(15); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(14); read1101.setScores(scores); + ffastqReads.push_back(read1101); + FastqRead read1102; read1102.setName("M00967_44_000000000-A3K85_1_1102_7114_24544"); + read1102.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1102.setScores(scores); + ffastqReads.push_back(read1102); + FastqRead read1103; read1103.setName("M00967_44_000000000-A3K85_1_1102_21851_24671"); + read1103.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1103.setScores(scores); + ffastqReads.push_back(read1103); + FastqRead read1104; read1104.setName("M00967_44_000000000-A3K85_1_1102_13166_24678"); + read1104.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(30); read1104.setScores(scores); + ffastqReads.push_back(read1104); + FastqRead read1105; read1105.setName("M00967_44_000000000-A3K85_1_1102_21841_24687"); + read1105.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1105.setScores(scores); + ffastqReads.push_back(read1105); + FastqRead read1106; read1106.setName("M00967_44_000000000-A3K85_1_1102_16084_24695"); + read1106.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1106.setScores(scores); + ffastqReads.push_back(read1106); + FastqRead read1107; read1107.setName("M00967_44_000000000-A3K85_1_1102_11033_24747"); + read1107.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1107.setScores(scores); + ffastqReads.push_back(read1107); + FastqRead read1108; read1108.setName("M00967_44_000000000-A3K85_1_1102_24617_24814"); + read1108.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCAGCGCAAGTCTGGAGTGAAAGCCCGGGGCCCAACCCCGGAACTGCTCTGGAAACTGTGCGGCTAGAGTACTGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGGGAAATGCGTAGGTATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1108.setScores(scores); + ffastqReads.push_back(read1108); + FastqRead read1109; read1109.setName("M00967_44_000000000-A3K85_1_1102_13003_24849"); + read1109.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1109.setScores(scores); + ffastqReads.push_back(read1109); + FastqRead read1110; read1110.setName("M00967_44_000000000-A3K85_1_1102_13255_25038"); + read1110.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); read1110.setScores(scores); + ffastqReads.push_back(read1110); + FastqRead read1111; read1111.setName("M00967_44_000000000-A3K85_1_1102_18813_25054"); + read1111.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1111.setScores(scores); + ffastqReads.push_back(read1111); + FastqRead read1112; read1112.setName("M00967_44_000000000-A3K85_1_1102_20120_25062"); + read1112.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1112.setScores(scores); + ffastqReads.push_back(read1112); + FastqRead read1113; read1113.setName("M00967_44_000000000-A3K85_1_1102_9354_25093"); + read1113.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGACGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1113.setScores(scores); + ffastqReads.push_back(read1113); + FastqRead read1114; read1114.setName("M00967_44_000000000-A3K85_1_1102_13839_25113"); + read1114.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1114.setScores(scores); + ffastqReads.push_back(read1114); + FastqRead read1115; read1115.setName("M00967_44_000000000-A3K85_1_1102_14390_25130"); + read1115.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1115.setScores(scores); + ffastqReads.push_back(read1115); + FastqRead read1116; read1116.setName("M00967_44_000000000-A3K85_1_1102_16408_25165"); + read1116.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1116.setScores(scores); + ffastqReads.push_back(read1116); + FastqRead read1117; read1117.setName("M00967_44_000000000-A3K85_1_1102_15601_25205"); + read1117.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1117.setScores(scores); + ffastqReads.push_back(read1117); + FastqRead read1118; read1118.setName("M00967_44_000000000-A3K85_1_1102_22706_25296"); + read1118.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1118.setScores(scores); + ffastqReads.push_back(read1118); + FastqRead read1119; read1119.setName("M00967_44_000000000-A3K85_1_1102_9358_25344"); + read1119.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(19); scores.push_back(33); scores.push_back(34); scores.push_back(19); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(29); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1119.setScores(scores); + ffastqReads.push_back(read1119); + FastqRead read1120; read1120.setName("M00967_44_000000000-A3K85_1_1102_7439_25389"); + read1120.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCCGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGAAGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(16); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(29); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(13); read1120.setScores(scores); + ffastqReads.push_back(read1120); + FastqRead read1121; read1121.setName("M00967_44_000000000-A3K85_1_1102_15712_25398"); + read1121.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); read1121.setScores(scores); + ffastqReads.push_back(read1121); + FastqRead read1122; read1122.setName("M00967_44_000000000-A3K85_1_1102_12245_25505"); + read1122.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1122.setScores(scores); + ffastqReads.push_back(read1122); + FastqRead read1123; read1123.setName("M00967_44_000000000-A3K85_1_1102_18414_25571"); + read1123.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1123.setScores(scores); + ffastqReads.push_back(read1123); + FastqRead read1124; read1124.setName("M00967_44_000000000-A3K85_1_1102_10179_25668"); + read1124.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1124.setScores(scores); + ffastqReads.push_back(read1124); + FastqRead read1125; read1125.setName("M00967_44_000000000-A3K85_1_1102_14185_25718"); + read1125.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1125.setScores(scores); + ffastqReads.push_back(read1125); + FastqRead read1126; read1126.setName("M00967_44_000000000-A3K85_1_1102_19639_25825"); + read1126.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGATGGCAAGTAGAATGTTAAATCCATCGGCTCAACCGGTGGCTGCGTTCTAAACTGCCGTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGGTTTAACTGACGCTGAGGCTCGAAAACGTGGGGAGCAAAAAG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(13); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); read1126.setScores(scores); + ffastqReads.push_back(read1126); + FastqRead read1127; read1127.setName("M00967_44_000000000-A3K85_1_1102_12486_25898"); + read1127.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(37); read1127.setScores(scores); + ffastqReads.push_back(read1127); + FastqRead read1128; read1128.setName("M00967_44_000000000-A3K85_1_1102_20627_25927"); + read1128.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1128.setScores(scores); + ffastqReads.push_back(read1128); + FastqRead read1129; read1129.setName("M00967_44_000000000-A3K85_1_1102_16125_25967"); + read1129.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1129.setScores(scores); + ffastqReads.push_back(read1129); + FastqRead read1130; read1130.setName("M00967_44_000000000-A3K85_1_1102_21858_25971"); + read1130.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1130.setScores(scores); + ffastqReads.push_back(read1130); + FastqRead read1131; read1131.setName("M00967_44_000000000-A3K85_1_1102_7611_26146"); + read1131.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAAATGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCCAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(28); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1131.setScores(scores); + ffastqReads.push_back(read1131); + FastqRead read1132; read1132.setName("M00967_44_000000000-A3K85_1_1102_11609_26197"); + read1132.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1132.setScores(scores); + ffastqReads.push_back(read1132); + FastqRead read1133; read1133.setName("M00967_44_000000000-A3K85_1_1102_23578_26267"); + read1133.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1133.setScores(scores); + ffastqReads.push_back(read1133); + FastqRead read1134; read1134.setName("M00967_44_000000000-A3K85_1_1102_21062_26588"); + read1134.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); read1134.setScores(scores); + ffastqReads.push_back(read1134); + FastqRead read1135; read1135.setName("M00967_44_000000000-A3K85_1_1102_20584_26628"); + read1135.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1135.setScores(scores); + ffastqReads.push_back(read1135); + FastqRead read1136; read1136.setName("M00967_44_000000000-A3K85_1_1102_14504_26916"); + read1136.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGGAGGCGGAATGCGTGGTGGAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTTAGGCACGAAAGGGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(14); read1136.setScores(scores); + ffastqReads.push_back(read1136); + FastqRead read1137; read1137.setName("M00967_44_000000000-A3K85_1_1102_13130_27044"); + read1137.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1137.setScores(scores); + ffastqReads.push_back(read1137); + FastqRead read1138; read1138.setName("M00967_44_000000000-A3K85_1_1102_11409_27262"); + read1138.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1138.setScores(scores); + ffastqReads.push_back(read1138); + FastqRead read1139; read1139.setName("M00967_44_000000000-A3K85_1_1102_21640_27300"); + read1139.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1139.setScores(scores); + ffastqReads.push_back(read1139); + FastqRead read1140; read1140.setName("M00967_44_000000000-A3K85_1_1102_10152_27371"); + read1140.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGATGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1140.setScores(scores); + ffastqReads.push_back(read1140); + FastqRead read1141; read1141.setName("M00967_44_000000000-A3K85_1_1102_9655_27555"); + read1141.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAAAAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(33); read1141.setScores(scores); + ffastqReads.push_back(read1141); + FastqRead read1142; read1142.setName("M00967_44_000000000-A3K85_1_1102_11932_27788"); + read1142.setSeq("TACGTAGGAGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGTGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAGCCCGGGGCTCAACCCCGGTACTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCACGAAAGCGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1142.setScores(scores); + ffastqReads.push_back(read1142); + FastqRead read1143; read1143.setName("M00967_44_000000000-A3K85_1_1102_10822_27885"); + read1143.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCGCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGGGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGGGGGGAGCCAACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(31); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1143.setScores(scores); + ffastqReads.push_back(read1143); + FastqRead read1144; read1144.setName("M00967_44_000000000-A3K85_1_1102_12475_28097"); + read1144.setSeq("TACGGAGGATGCGAGGGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGAGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(27); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(15); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); read1144.setScores(scores); + ffastqReads.push_back(read1144); + FastqRead read1145; read1145.setName("M00967_44_000000000-A3K85_1_1102_15269_28120"); + read1145.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(25); scores.push_back(29); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); read1145.setScores(scores); + ffastqReads.push_back(read1145); + FastqRead read1146; read1146.setName("M00967_44_000000000-A3K85_1_1102_15327_28246"); + read1146.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1146.setScores(scores); + ffastqReads.push_back(read1146); + FastqRead read1147; read1147.setName("M00967_44_000000000-A3K85_1_1102_13612_28569"); + read1147.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1147.setScores(scores); + ffastqReads.push_back(read1147); + FastqRead read1148; read1148.setName("M00967_44_000000000-A3K85_1_1102_19080_28660"); + read1148.setSeq("TACGGAGGATGCNAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(2); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(31); scores.push_back(35); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read1149.setScores(scores); + ffastqReads.push_back(read1149); + FastqRead read1150; read1150.setName("M00967_44_000000000-A3K85_1_1102_16028_28783"); + read1150.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTCAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(24); read1150.setScores(scores); + ffastqReads.push_back(read1150); + FastqRead read1151; read1151.setName("M00967_44_000000000-A3K85_1_1103_16176_1457"); + read1151.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1151.setScores(scores); + ffastqReads.push_back(read1151); + FastqRead read1152; read1152.setName("M00967_44_000000000-A3K85_1_1103_15035_1543"); + read1152.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCAGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1152.setScores(scores); + ffastqReads.push_back(read1152); + FastqRead read1153; read1153.setName("M00967_44_000000000-A3K85_1_1103_15030_1563"); + read1153.setSeq("TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGAGCAAGTCCGAAGTGAAAACCCAAAGCTCAACTATGGGAATGCTTTAGAAACTGCTCAGCTAGAGTGCAGGAGAGGCAAGTGGAATTCTTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(19); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1153.setScores(scores); + ffastqReads.push_back(read1153); + FastqRead read1154; read1154.setName("M00967_44_000000000-A3K85_1_1103_14269_1635"); + read1154.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1154.setScores(scores); + ffastqReads.push_back(read1154); + FastqRead read1155; read1155.setName("M00967_44_000000000-A3K85_1_1103_15104_1907"); + read1155.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); read1155.setScores(scores); + ffastqReads.push_back(read1155); + FastqRead read1156; read1156.setName("M00967_44_000000000-A3K85_1_1103_13556_2049"); + read1156.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGGAGCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(19); scores.push_back(30); scores.push_back(19); scores.push_back(19); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(30); scores.push_back(33); scores.push_back(17); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(17); scores.push_back(27); scores.push_back(27); scores.push_back(14); scores.push_back(15); scores.push_back(30); scores.push_back(30); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); read1156.setScores(scores); + ffastqReads.push_back(read1156); + FastqRead read1157; read1157.setName("M00967_44_000000000-A3K85_1_1103_11904_2102"); + read1157.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGGATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1157.setScores(scores); + ffastqReads.push_back(read1157); + FastqRead read1158; read1158.setName("M00967_44_000000000-A3K85_1_1103_19648_2389"); + read1158.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCAGAAGTGAAAGCCCGCGGCTCAACTGCGGGACTGCTTTTGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1158.setScores(scores); + ffastqReads.push_back(read1158); + FastqRead read1159; read1159.setName("M00967_44_000000000-A3K85_1_1103_13799_2475"); + read1159.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1159.setScores(scores); + ffastqReads.push_back(read1159); + FastqRead read1160; read1160.setName("M00967_44_000000000-A3K85_1_1103_20712_2483"); + read1160.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1160.setScores(scores); + ffastqReads.push_back(read1160); + FastqRead read1161; read1161.setName("M00967_44_000000000-A3K85_1_1103_10052_2794"); + read1161.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1161.setScores(scores); + ffastqReads.push_back(read1161); + FastqRead read1162; read1162.setName("M00967_44_000000000-A3K85_1_1103_16040_2794"); + read1162.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1162.setScores(scores); + ffastqReads.push_back(read1162); + FastqRead read1163; read1163.setName("M00967_44_000000000-A3K85_1_1103_14729_2802"); + read1163.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1163.setScores(scores); + ffastqReads.push_back(read1163); + FastqRead read1164; read1164.setName("M00967_44_000000000-A3K85_1_1103_17195_2846"); + read1164.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(29); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1165.setScores(scores); + ffastqReads.push_back(read1165); + FastqRead read1166; read1166.setName("M00967_44_000000000-A3K85_1_1103_12088_3303"); + read1166.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGGATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); read1166.setScores(scores); + ffastqReads.push_back(read1166); + FastqRead read1167; read1167.setName("M00967_44_000000000-A3K85_1_1103_16422_3350"); + read1167.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAAAACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read1167.setScores(scores); + ffastqReads.push_back(read1167); + FastqRead read1168; read1168.setName("M00967_44_000000000-A3K85_1_1103_10725_3494"); + read1168.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1168.setScores(scores); + ffastqReads.push_back(read1168); + FastqRead read1169; read1169.setName("M00967_44_000000000-A3K85_1_1103_22196_3592"); + read1169.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1169.setScores(scores); + ffastqReads.push_back(read1169); + FastqRead read1170; read1170.setName("M00967_44_000000000-A3K85_1_1103_16331_3660"); + read1170.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTTTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(29); scores.push_back(16); scores.push_back(14); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1170.setScores(scores); + ffastqReads.push_back(read1170); + FastqRead read1171; read1171.setName("M00967_44_000000000-A3K85_1_1103_9295_3695"); + read1171.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCAGAAGGGAAAGCCCGCGGCTCAACTGCGGGACTGCTTTTGAAACTGTATAACTAGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGAGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); 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scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); read1171.setScores(scores); + ffastqReads.push_back(read1171); + FastqRead read1172; read1172.setName("M00967_44_000000000-A3K85_1_1103_23039_3733"); + read1172.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(33); read1172.setScores(scores); + ffastqReads.push_back(read1172); + FastqRead read1173; read1173.setName("M00967_44_000000000-A3K85_1_1103_19195_3867"); + read1173.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1173.setScores(scores); + ffastqReads.push_back(read1173); + FastqRead read1174; read1174.setName("M00967_44_000000000-A3K85_1_1103_10788_4000"); + read1174.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(29); scores.push_back(28); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); read1174.setScores(scores); + ffastqReads.push_back(read1174); + FastqRead read1175; read1175.setName("M00967_44_000000000-A3K85_1_1103_8992_4423"); + read1175.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(26); read1175.setScores(scores); + ffastqReads.push_back(read1175); + FastqRead read1176; read1176.setName("M00967_44_000000000-A3K85_1_1103_17459_4472"); + read1176.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1176.setScores(scores); + ffastqReads.push_back(read1176); + FastqRead read1177; read1177.setName("M00967_44_000000000-A3K85_1_1103_17449_4602"); + read1177.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1177.setScores(scores); + ffastqReads.push_back(read1177); + FastqRead read1178; read1178.setName("M00967_44_000000000-A3K85_1_1103_20830_4693"); + read1178.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1178.setScores(scores); + ffastqReads.push_back(read1178); + FastqRead read1179; read1179.setName("M00967_44_000000000-A3K85_1_1103_12981_4751"); + read1179.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1179.setScores(scores); + ffastqReads.push_back(read1179); + FastqRead read1180; read1180.setName("M00967_44_000000000-A3K85_1_1103_9233_4796"); + read1180.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(33); read1180.setScores(scores); + ffastqReads.push_back(read1180); + FastqRead read1181; read1181.setName("M00967_44_000000000-A3K85_1_1103_16944_4809"); + read1181.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1181.setScores(scores); + ffastqReads.push_back(read1181); + FastqRead read1182; read1182.setName("M00967_44_000000000-A3K85_1_1103_16552_4854"); + read1182.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); read1182.setScores(scores); + ffastqReads.push_back(read1182); + FastqRead read1183; read1183.setName("M00967_44_000000000-A3K85_1_1103_9737_5004"); + read1183.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCATCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); read1183.setScores(scores); + ffastqReads.push_back(read1183); + FastqRead read1184; read1184.setName("M00967_44_000000000-A3K85_1_1103_21943_5012"); + read1184.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1184.setScores(scores); + ffastqReads.push_back(read1184); + FastqRead read1185; read1185.setName("M00967_44_000000000-A3K85_1_1103_17872_5018"); + read1185.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGATGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1185.setScores(scores); + ffastqReads.push_back(read1185); + FastqRead read1186; read1186.setName("M00967_44_000000000-A3K85_1_1103_21336_5022"); + read1186.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1186.setScores(scores); + ffastqReads.push_back(read1186); + FastqRead read1187; read1187.setName("M00967_44_000000000-A3K85_1_1103_16401_5096"); + read1187.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCATTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1187.setScores(scores); + ffastqReads.push_back(read1187); + FastqRead read1188; read1188.setName("M00967_44_000000000-A3K85_1_1103_10037_5177"); + read1188.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(14); read1188.setScores(scores); + ffastqReads.push_back(read1188); + FastqRead read1189; read1189.setName("M00967_44_000000000-A3K85_1_1103_14484_5243"); + read1189.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(33); read1189.setScores(scores); + ffastqReads.push_back(read1189); + FastqRead read1190; read1190.setName("M00967_44_000000000-A3K85_1_1103_9186_5372"); + read1190.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1191.setScores(scores); + ffastqReads.push_back(read1191); + FastqRead read1192; read1192.setName("M00967_44_000000000-A3K85_1_1103_16230_5574"); + read1192.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); read1192.setScores(scores); + ffastqReads.push_back(read1192); + FastqRead read1193; read1193.setName("M00967_44_000000000-A3K85_1_1103_25080_5623"); + read1193.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1193.setScores(scores); + ffastqReads.push_back(read1193); + FastqRead read1194; read1194.setName("M00967_44_000000000-A3K85_1_1103_15278_5700"); + read1194.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAGCCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1194.setScores(scores); + ffastqReads.push_back(read1194); + FastqRead read1195; read1195.setName("M00967_44_000000000-A3K85_1_1103_10510_5756"); + read1195.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGGGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(29); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(27); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(29); scores.push_back(28); scores.push_back(28); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(25); read1195.setScores(scores); + ffastqReads.push_back(read1195); + FastqRead read1196; read1196.setName("M00967_44_000000000-A3K85_1_1103_22433_5765"); + read1196.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1196.setScores(scores); + ffastqReads.push_back(read1196); + FastqRead read1197; read1197.setName("M00967_44_000000000-A3K85_1_1103_10468_5827"); + read1197.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1197.setScores(scores); + ffastqReads.push_back(read1197); + FastqRead read1198; read1198.setName("M00967_44_000000000-A3K85_1_1103_13969_5837"); + read1198.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(37); read1198.setScores(scores); + ffastqReads.push_back(read1198); + FastqRead read1199; read1199.setName("M00967_44_000000000-A3K85_1_1103_22183_5860"); + read1199.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTTAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACCGACGCTGAGGCACCAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(25); read1199.setScores(scores); + ffastqReads.push_back(read1199); + FastqRead read1200; read1200.setName("M00967_44_000000000-A3K85_1_1103_8892_5909"); + read1200.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCTCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1200.setScores(scores); + ffastqReads.push_back(read1200); + FastqRead read1201; read1201.setName("M00967_44_000000000-A3K85_1_1103_20600_5943"); + read1201.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); read1201.setScores(scores); + ffastqReads.push_back(read1201); + FastqRead read1202; read1202.setName("M00967_44_000000000-A3K85_1_1103_18613_5969"); + read1202.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1202.setScores(scores); + ffastqReads.push_back(read1202); + FastqRead read1203; read1203.setName("M00967_44_000000000-A3K85_1_1103_11964_5972"); + read1203.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); read1203.setScores(scores); + ffastqReads.push_back(read1203); + FastqRead read1204; read1204.setName("M00967_44_000000000-A3K85_1_1103_23719_6018"); + read1204.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGAGCGCGCAGGCGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); 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scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1204.setScores(scores); + ffastqReads.push_back(read1204); + FastqRead read1205; read1205.setName("M00967_44_000000000-A3K85_1_1103_15108_6040"); + read1205.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1205.setScores(scores); + ffastqReads.push_back(read1205); + FastqRead read1206; read1206.setName("M00967_44_000000000-A3K85_1_1103_10121_6076"); + read1206.setSeq("TACGGAGGTTGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGGATGCGGAATGCGTGGTGTAGCGGGGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(29); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(33); read1206.setScores(scores); + ffastqReads.push_back(read1206); + FastqRead read1207; read1207.setName("M00967_44_000000000-A3K85_1_1103_8420_6115"); + read1207.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGCTCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); read1207.setScores(scores); + ffastqReads.push_back(read1207); + FastqRead read1208; read1208.setName("M00967_44_000000000-A3K85_1_1103_6717_6130"); + read1208.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTACGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGCAAGTGCGGGGATCGAACCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(18); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); read1208.setScores(scores); + ffastqReads.push_back(read1208); + FastqRead read1209; read1209.setName("M00967_44_000000000-A3K85_1_1103_21228_6156"); + read1209.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(25); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1209.setScores(scores); + ffastqReads.push_back(read1209); + FastqRead read1210; read1210.setName("M00967_44_000000000-A3K85_1_1103_6793_6256"); + read1210.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1210.setScores(scores); + ffastqReads.push_back(read1210); + FastqRead read1211; read1211.setName("M00967_44_000000000-A3K85_1_1103_25376_6286"); + read1211.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1211.setScores(scores); + ffastqReads.push_back(read1211); + FastqRead read1212; read1212.setName("M00967_44_000000000-A3K85_1_1103_14034_6351"); + read1212.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1212.setScores(scores); + ffastqReads.push_back(read1212); + FastqRead read1213; read1213.setName("M00967_44_000000000-A3K85_1_1103_19209_6395"); + read1213.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1213.setScores(scores); + ffastqReads.push_back(read1213); + FastqRead read1214; read1214.setName("M00967_44_000000000-A3K85_1_1103_24543_6404"); + read1214.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1214.setScores(scores); + ffastqReads.push_back(read1214); + FastqRead read1215; read1215.setName("M00967_44_000000000-A3K85_1_1103_7168_6417"); + read1215.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); read1215.setScores(scores); + ffastqReads.push_back(read1215); + FastqRead read1216; read1216.setName("M00967_44_000000000-A3K85_1_1103_7188_6426"); + read1216.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); read1216.setScores(scores); + ffastqReads.push_back(read1216); + FastqRead read1217; read1217.setName("M00967_44_000000000-A3K85_1_1103_9179_6566"); + read1217.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1217.setScores(scores); + ffastqReads.push_back(read1217); + FastqRead read1218; read1218.setName("M00967_44_000000000-A3K85_1_1103_15717_6589"); + read1218.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCGGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1218.setScores(scores); + ffastqReads.push_back(read1218); + FastqRead read1219; read1219.setName("M00967_44_000000000-A3K85_1_1103_9938_6608"); + read1219.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGGACGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1219.setScores(scores); + ffastqReads.push_back(read1219); + FastqRead read1220; read1220.setName("M00967_44_000000000-A3K85_1_1103_16883_6661"); + read1220.setSeq("TACGTAGGAGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGAAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); read1220.setScores(scores); + ffastqReads.push_back(read1220); + FastqRead read1221; read1221.setName("M00967_44_000000000-A3K85_1_1103_11425_6670"); + read1221.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGACGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(17); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); read1221.setScores(scores); + ffastqReads.push_back(read1221); + FastqRead read1222; read1222.setName("M00967_44_000000000-A3K85_1_1103_10233_6672"); + read1222.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1222.setScores(scores); + ffastqReads.push_back(read1222); + FastqRead read1223; read1223.setName("M00967_44_000000000-A3K85_1_1103_24986_6678"); + read1223.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCCCGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1223.setScores(scores); + ffastqReads.push_back(read1223); + FastqRead read1224; read1224.setName("M00967_44_000000000-A3K85_1_1103_21822_6728"); + read1224.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1224.setScores(scores); + ffastqReads.push_back(read1224); + FastqRead read1225; read1225.setName("M00967_44_000000000-A3K85_1_1103_8324_6833"); + read1225.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1225.setScores(scores); + ffastqReads.push_back(read1225); + FastqRead read1226; read1226.setName("M00967_44_000000000-A3K85_1_1103_14878_6847"); + read1226.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(35); scores.push_back(27); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(27); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1227.setScores(scores); + ffastqReads.push_back(read1227); + FastqRead read1228; read1228.setName("M00967_44_000000000-A3K85_1_1103_18648_6959"); + read1228.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGACGGCAGTGCAAGTCTGGAGTGAAAGCCCGGGGCCCAACCCCGGAACTGCTCTGGAAACTGTGCGGCTAGAGTACTGGAGGGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1228.setScores(scores); + ffastqReads.push_back(read1228); + FastqRead read1229; read1229.setName("M00967_44_000000000-A3K85_1_1103_22675_7047"); + read1229.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCAGTCAAATTTCGGGGCTCAACCCCGTCCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1229.setScores(scores); + ffastqReads.push_back(read1229); + FastqRead read1230; read1230.setName("M00967_44_000000000-A3K85_1_1103_12738_7087"); + read1230.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1230.setScores(scores); + ffastqReads.push_back(read1230); + FastqRead read1231; read1231.setName("M00967_44_000000000-A3K85_1_1103_17138_7147"); + read1231.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1231.setScores(scores); + ffastqReads.push_back(read1231); + FastqRead read1232; read1232.setName("M00967_44_000000000-A3K85_1_1103_20997_7165"); + read1232.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1232.setScores(scores); + ffastqReads.push_back(read1232); + FastqRead read1233; read1233.setName("M00967_44_000000000-A3K85_1_1103_20629_7213"); + read1233.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1233.setScores(scores); + ffastqReads.push_back(read1233); + FastqRead read1234; read1234.setName("M00967_44_000000000-A3K85_1_1103_18680_7276"); + read1234.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1234.setScores(scores); + ffastqReads.push_back(read1234); + FastqRead read1235; read1235.setName("M00967_44_000000000-A3K85_1_1103_6942_7296"); + read1235.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGTGTAAAGGGAGCGTAGACGGCCATGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(28); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1235.setScores(scores); + ffastqReads.push_back(read1235); + FastqRead read1236; read1236.setName("M00967_44_000000000-A3K85_1_1103_21455_7343"); + read1236.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1236.setScores(scores); + ffastqReads.push_back(read1236); + FastqRead read1237; read1237.setName("M00967_44_000000000-A3K85_1_1103_18242_7492"); + read1237.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1237.setScores(scores); + ffastqReads.push_back(read1237); + FastqRead read1238; read1238.setName("M00967_44_000000000-A3K85_1_1103_22951_7512"); + read1238.setSeq("TACGGAGGATGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAGAGCAAGTCGACTGTGAAATCTATGGGCTTAACCCATAGCTGCGATCGAAACTGTTCATCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTCGTGTAGCGGTGAAATGCGTAAATATTAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGGGGGGGGAAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(12); read1238.setScores(scores); + ffastqReads.push_back(read1238); + FastqRead read1239; read1239.setName("M00967_44_000000000-A3K85_1_1103_10319_7544"); + read1239.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1239.setScores(scores); + ffastqReads.push_back(read1239); + FastqRead read1240; read1240.setName("M00967_44_000000000-A3K85_1_1103_6904_7573"); + read1240.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1240.setScores(scores); + ffastqReads.push_back(read1240); + FastqRead read1241; read1241.setName("M00967_44_000000000-A3K85_1_1103_7301_7685"); + read1241.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1241.setScores(scores); + ffastqReads.push_back(read1241); + FastqRead read1242; read1242.setName("M00967_44_000000000-A3K85_1_1103_15808_7721"); + read1242.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1242.setScores(scores); + ffastqReads.push_back(read1242); + FastqRead read1243; read1243.setName("M00967_44_000000000-A3K85_1_1103_11333_7738"); + read1243.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATAGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1243.setScores(scores); + ffastqReads.push_back(read1243); + FastqRead read1244; read1244.setName("M00967_44_000000000-A3K85_1_1103_19977_7746"); + read1244.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1244.setScores(scores); + ffastqReads.push_back(read1244); + FastqRead read1245; read1245.setName("M00967_44_000000000-A3K85_1_1103_16226_7784"); + read1245.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1245.setScores(scores); + ffastqReads.push_back(read1245); + FastqRead read1246; read1246.setName("M00967_44_000000000-A3K85_1_1103_19682_7793"); + read1246.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1246.setScores(scores); + ffastqReads.push_back(read1246); + FastqRead read1247; read1247.setName("M00967_44_000000000-A3K85_1_1103_16758_7846"); + read1247.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1247.setScores(scores); + ffastqReads.push_back(read1247); + FastqRead read1248; read1248.setName("M00967_44_000000000-A3K85_1_1103_24319_7847"); + read1248.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1248.setScores(scores); + ffastqReads.push_back(read1248); + FastqRead read1249; read1249.setName("M00967_44_000000000-A3K85_1_1103_25660_7945"); + read1249.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); read1249.setScores(scores); + ffastqReads.push_back(read1249); + FastqRead read1250; read1250.setName("M00967_44_000000000-A3K85_1_1103_26739_8041"); + read1250.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1250.setScores(scores); + ffastqReads.push_back(read1250); + FastqRead read1251; read1251.setName("M00967_44_000000000-A3K85_1_1103_22137_8043"); + read1251.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1251.setScores(scores); + ffastqReads.push_back(read1251); + FastqRead read1252; read1252.setName("M00967_44_000000000-A3K85_1_1103_26625_8082"); + read1252.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTAATCAAGTCAGAAGTGAAAACCCAGGGCTCAACCTTGGGACTGCTTTTGAAACTGAGTAGCTAGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1252.setScores(scores); + ffastqReads.push_back(read1252); + FastqRead read1253; read1253.setName("M00967_44_000000000-A3K85_1_1103_12693_8090"); + read1253.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1253.setScores(scores); + ffastqReads.push_back(read1253); + FastqRead read1254; read1254.setName("M00967_44_000000000-A3K85_1_1103_7037_8136"); + read1254.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1254.setScores(scores); + ffastqReads.push_back(read1254); + FastqRead read1255; read1255.setName("M00967_44_000000000-A3K85_1_1103_18917_8147"); + read1255.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGTTTAGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTTGAACTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1256.setScores(scores); + ffastqReads.push_back(read1256); + FastqRead read1257; read1257.setName("M00967_44_000000000-A3K85_1_1103_10821_8368"); + read1257.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1257.setScores(scores); + ffastqReads.push_back(read1257); + FastqRead read1258; read1258.setName("M00967_44_000000000-A3K85_1_1103_18384_8446"); + read1258.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1258.setScores(scores); + ffastqReads.push_back(read1258); + FastqRead read1259; read1259.setName("M00967_44_000000000-A3K85_1_1103_15582_8461"); + read1259.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1259.setScores(scores); + ffastqReads.push_back(read1259); + FastqRead read1260; read1260.setName("M00967_44_000000000-A3K85_1_1103_9199_8564"); + read1260.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1260.setScores(scores); + ffastqReads.push_back(read1260); + FastqRead read1261; read1261.setName("M00967_44_000000000-A3K85_1_1103_25782_8729"); + read1261.setSeq("TACGGAGGGTGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); read1261.setScores(scores); + ffastqReads.push_back(read1261); + FastqRead read1262; read1262.setName("M00967_44_000000000-A3K85_1_1103_14640_8834"); + read1262.setSeq("TACGGAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGTAGCCGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1262.setScores(scores); + ffastqReads.push_back(read1262); + FastqRead read1263; read1263.setName("M00967_44_000000000-A3K85_1_1103_27298_8883"); + read1263.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(33); read1263.setScores(scores); + ffastqReads.push_back(read1263); + FastqRead read1264; read1264.setName("M00967_44_000000000-A3K85_1_1103_4824_8949"); + read1264.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(37); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); read1264.setScores(scores); + ffastqReads.push_back(read1264); + FastqRead read1265; read1265.setName("M00967_44_000000000-A3K85_1_1103_24749_9012"); + read1265.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1265.setScores(scores); + ffastqReads.push_back(read1265); + FastqRead read1266; read1266.setName("M00967_44_000000000-A3K85_1_1103_25347_9123"); + read1266.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1266.setScores(scores); + ffastqReads.push_back(read1266); + FastqRead read1267; read1267.setName("M00967_44_000000000-A3K85_1_1103_21446_9321"); + read1267.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1267.setScores(scores); + ffastqReads.push_back(read1267); + FastqRead read1268; read1268.setName("M00967_44_000000000-A3K85_1_1103_18608_9367"); + read1268.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1269.setScores(scores); + ffastqReads.push_back(read1269); + FastqRead read1270; read1270.setName("M00967_44_000000000-A3K85_1_1103_3944_9581"); + read1270.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1270.setScores(scores); + ffastqReads.push_back(read1270); + FastqRead read1271; read1271.setName("M00967_44_000000000-A3K85_1_1103_7934_9596"); + read1271.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1271.setScores(scores); + ffastqReads.push_back(read1271); + FastqRead read1272; read1272.setName("M00967_44_000000000-A3K85_1_1103_15136_9597"); + read1272.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGAGCTGCAAGTCAGATGTGAAATCCCGGGGCTCAACCCCGGAACTGCATTTGAAACTGTAGCCCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAAATGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1272.setScores(scores); + ffastqReads.push_back(read1272); + FastqRead read1273; read1273.setName("M00967_44_000000000-A3K85_1_1103_8102_9598"); + read1273.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCATGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1273.setScores(scores); + ffastqReads.push_back(read1273); + FastqRead read1274; read1274.setName("M00967_44_000000000-A3K85_1_1103_27328_9706"); + read1274.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1274.setScores(scores); + ffastqReads.push_back(read1274); + FastqRead read1275; read1275.setName("M00967_44_000000000-A3K85_1_1103_17645_9714"); + read1275.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1275.setScores(scores); + ffastqReads.push_back(read1275); + FastqRead read1276; read1276.setName("M00967_44_000000000-A3K85_1_1103_27341_9719"); + read1276.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(31); read1276.setScores(scores); + ffastqReads.push_back(read1276); + FastqRead read1277; read1277.setName("M00967_44_000000000-A3K85_1_1103_6782_9724"); + read1277.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(37); read1277.setScores(scores); + ffastqReads.push_back(read1277); + FastqRead read1278; read1278.setName("M00967_44_000000000-A3K85_1_1103_6099_9759"); + read1278.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1278.setScores(scores); + ffastqReads.push_back(read1278); + FastqRead read1279; read1279.setName("M00967_44_000000000-A3K85_1_1103_8333_9775"); + read1279.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1279.setScores(scores); + ffastqReads.push_back(read1279); + FastqRead read1280; read1280.setName("M00967_44_000000000-A3K85_1_1103_8401_9780"); + read1280.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1280.setScores(scores); + ffastqReads.push_back(read1280); + FastqRead read1281; read1281.setName("M00967_44_000000000-A3K85_1_1103_23320_9784"); + read1281.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1282.setScores(scores); + ffastqReads.push_back(read1282); + FastqRead read1283; read1283.setName("M00967_44_000000000-A3K85_1_1103_15522_9957"); + read1283.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTGTAGCTGGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1283.setScores(scores); + ffastqReads.push_back(read1283); + FastqRead read1284; read1284.setName("M00967_44_000000000-A3K85_1_1103_5428_9992"); + read1284.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1284.setScores(scores); + ffastqReads.push_back(read1284); + FastqRead read1285; read1285.setName("M00967_44_000000000-A3K85_1_1103_5592_10012"); + read1285.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1285.setScores(scores); + ffastqReads.push_back(read1285); + FastqRead read1286; read1286.setName("M00967_44_000000000-A3K85_1_1103_24939_10063"); + read1286.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1286.setScores(scores); + ffastqReads.push_back(read1286); + FastqRead read1287; read1287.setName("M00967_44_000000000-A3K85_1_1103_28776_10102"); + read1287.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTAGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1287.setScores(scores); + ffastqReads.push_back(read1287); + FastqRead read1288; read1288.setName("M00967_44_000000000-A3K85_1_1103_23651_10126"); + read1288.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGAGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1288.setScores(scores); + ffastqReads.push_back(read1288); + FastqRead read1289; read1289.setName("M00967_44_000000000-A3K85_1_1103_6856_10138"); + read1289.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1289.setScores(scores); + ffastqReads.push_back(read1289); + FastqRead read1290; read1290.setName("M00967_44_000000000-A3K85_1_1103_12892_10199"); + read1290.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1290.setScores(scores); + ffastqReads.push_back(read1290); + FastqRead read1291; read1291.setName("M00967_44_000000000-A3K85_1_1103_9328_10229"); + read1291.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1291.setScores(scores); + ffastqReads.push_back(read1291); + FastqRead read1292; read1292.setName("M00967_44_000000000-A3K85_1_1103_18409_10285"); + read1292.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGGGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGGCTGTAACTGACGTTGAGGCTCGAAGGCGGGGGGAGAAAAAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1292.setScores(scores); + ffastqReads.push_back(read1292); + FastqRead read1293; read1293.setName("M00967_44_000000000-A3K85_1_1103_26783_10286"); + read1293.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1293.setScores(scores); + ffastqReads.push_back(read1293); + FastqRead read1294; read1294.setName("M00967_44_000000000-A3K85_1_1103_11485_10402"); + read1294.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1294.setScores(scores); + ffastqReads.push_back(read1294); + FastqRead read1295; read1295.setName("M00967_44_000000000-A3K85_1_1103_24812_10436"); + read1295.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGGGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAAAACCAGTGGCGAAGCGGGCTTACTGGACTGTAACTGACGTTGAGGCCCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1295.setScores(scores); + ffastqReads.push_back(read1295); + FastqRead read1296; read1296.setName("M00967_44_000000000-A3K85_1_1103_10377_10477"); + read1296.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1296.setScores(scores); + ffastqReads.push_back(read1296); + FastqRead read1297; read1297.setName("M00967_44_000000000-A3K85_1_1103_21285_10511"); + read1297.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1297.setScores(scores); + ffastqReads.push_back(read1297); + FastqRead read1298; read1298.setName("M00967_44_000000000-A3K85_1_1103_11360_10556"); + read1298.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1298.setScores(scores); + ffastqReads.push_back(read1298); + FastqRead read1299; read1299.setName("M00967_44_000000000-A3K85_1_1103_15421_10557"); + read1299.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGGAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(27); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(31); scores.push_back(29); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); read1299.setScores(scores); + ffastqReads.push_back(read1299); + FastqRead read1300; read1300.setName("M00967_44_000000000-A3K85_1_1103_25286_10559"); + read1300.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); read1300.setScores(scores); + ffastqReads.push_back(read1300); + FastqRead read1301; read1301.setName("M00967_44_000000000-A3K85_1_1103_12760_10601"); + read1301.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGGTGTCAAAACTACCGGCTCAACCGATAGTCGCACTCAAAACTGCAGCTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGGTATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGGTTTTACTGACGCTGAGGGTCGAAAGGGTGGGGGGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); read1301.setScores(scores); + ffastqReads.push_back(read1301); + FastqRead read1302; read1302.setName("M00967_44_000000000-A3K85_1_1103_9066_10619"); + read1302.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1302.setScores(scores); + ffastqReads.push_back(read1302); + FastqRead read1303; read1303.setName("M00967_44_000000000-A3K85_1_1103_18120_10646"); + read1303.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1303.setScores(scores); + ffastqReads.push_back(read1303); + FastqRead read1304; read1304.setName("M00967_44_000000000-A3K85_1_1103_5698_10687"); + read1304.setSeq("TACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGAGTGTAGGCGGCTTAATAAGTTAGATGTGAAATCCCGCGGCTCAACCGCGGAACTGCATCTAAAACTGTTGAGCTGGAGTGCAGGAGAGGTGAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGACTCACTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1304.setScores(scores); + ffastqReads.push_back(read1304); + FastqRead read1305; read1305.setName("M00967_44_000000000-A3K85_1_1103_11293_10689"); + read1305.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAATAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1305.setScores(scores); + ffastqReads.push_back(read1305); + FastqRead read1306; read1306.setName("M00967_44_000000000-A3K85_1_1103_11518_10893"); + read1306.setSeq("TACGTAGGGGGTAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTAATCAAGTCAGAAGTGAAAACCCAGGGCTCAACCTTGGGACTGCTTTTGAAACTGAGTAGCTAGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1306.setScores(scores); + ffastqReads.push_back(read1306); + FastqRead read1307; read1307.setName("M00967_44_000000000-A3K85_1_1103_5776_10916"); + read1307.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1307.setScores(scores); + ffastqReads.push_back(read1307); + FastqRead read1308; read1308.setName("M00967_44_000000000-A3K85_1_1103_22681_10930"); + read1308.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1308.setScores(scores); + ffastqReads.push_back(read1308); + FastqRead read1309; read1309.setName("M00967_44_000000000-A3K85_1_1103_9113_10930"); + read1309.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1309.setScores(scores); + ffastqReads.push_back(read1309); + FastqRead read1310; read1310.setName("M00967_44_000000000-A3K85_1_1103_25968_11012"); + read1310.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1311.setScores(scores); + ffastqReads.push_back(read1311); + FastqRead read1312; read1312.setName("M00967_44_000000000-A3K85_1_1103_24652_11069"); + read1312.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1312.setScores(scores); + ffastqReads.push_back(read1312); + FastqRead read1313; read1313.setName("M00967_44_000000000-A3K85_1_1103_19812_11148"); + read1313.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCCTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1313.setScores(scores); + ffastqReads.push_back(read1313); + FastqRead read1314; read1314.setName("M00967_44_000000000-A3K85_1_1103_28989_11149"); + read1314.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1314.setScores(scores); + ffastqReads.push_back(read1314); + FastqRead read1315; read1315.setName("M00967_44_000000000-A3K85_1_1103_21260_11157"); + read1315.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1315.setScores(scores); + ffastqReads.push_back(read1315); + FastqRead read1316; read1316.setName("M00967_44_000000000-A3K85_1_1103_8886_11261"); + read1316.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1316.setScores(scores); + ffastqReads.push_back(read1316); + FastqRead read1317; read1317.setName("M00967_44_000000000-A3K85_1_1103_22854_11267"); + read1317.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1317.setScores(scores); + ffastqReads.push_back(read1317); + FastqRead read1318; read1318.setName("M00967_44_000000000-A3K85_1_1103_5785_11267"); + read1318.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTAGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGAACTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAGTGGCGAAGGCGGCCCGCTGGGCTTTTACTGACGCTGAAGCACGAAAACGGGGGTAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); 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scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(31); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(13); read1318.setScores(scores); + ffastqReads.push_back(read1318); + FastqRead read1319; read1319.setName("M00967_44_000000000-A3K85_1_1103_19911_11294"); + read1319.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1319.setScores(scores); + ffastqReads.push_back(read1319); + FastqRead read1320; read1320.setName("M00967_44_000000000-A3K85_1_1103_7383_11335"); + read1320.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGCCGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); read1320.setScores(scores); + ffastqReads.push_back(read1320); + FastqRead read1321; read1321.setName("M00967_44_000000000-A3K85_1_1103_16461_11423"); + read1321.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1321.setScores(scores); + ffastqReads.push_back(read1321); + FastqRead read1322; read1322.setName("M00967_44_000000000-A3K85_1_1103_26385_11447"); + read1322.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1322.setScores(scores); + ffastqReads.push_back(read1322); + FastqRead read1323; read1323.setName("M00967_44_000000000-A3K85_1_1103_5679_11462"); + read1323.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1325.setScores(scores); + ffastqReads.push_back(read1325); + FastqRead read1326; read1326.setName("M00967_44_000000000-A3K85_1_1103_18212_11684"); + read1326.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGCGGCAAGTCTGAAGTGAAAGGCAGGGGCTTAACCCCTGAACTGCTTTGGAAACTGCCATGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); 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scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1326.setScores(scores); + ffastqReads.push_back(read1326); + FastqRead read1327; read1327.setName("M00967_44_000000000-A3K85_1_1103_23595_11768"); + read1327.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1327.setScores(scores); + ffastqReads.push_back(read1327); + FastqRead read1328; read1328.setName("M00967_44_000000000-A3K85_1_1103_10123_11799"); + read1328.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGCAAAATTGCGGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGGGGTGTAGCGGGGAATTGCTTAGATATCCCGAAGAACTCCGATTGCGAAGGCAGCTCACTGGGCTGCAACTAACACTAATGCTCGAAAGGGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(19); scores.push_back(33); scores.push_back(19); scores.push_back(33); scores.push_back(18); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(33); scores.push_back(30); scores.push_back(17); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(39); scores.push_back(35); scores.push_back(27); scores.push_back(17); scores.push_back(30); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(27); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(29); scores.push_back(28); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(16); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); read1328.setScores(scores); + ffastqReads.push_back(read1328); + FastqRead read1329; read1329.setName("M00967_44_000000000-A3K85_1_1103_23308_11803"); + read1329.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1329.setScores(scores); + ffastqReads.push_back(read1329); + FastqRead read1330; read1330.setName("M00967_44_000000000-A3K85_1_1103_6203_11808"); + read1330.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1330.setScores(scores); + ffastqReads.push_back(read1330); + FastqRead read1331; read1331.setName("M00967_44_000000000-A3K85_1_1103_23321_11815"); + read1331.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1331.setScores(scores); + ffastqReads.push_back(read1331); + FastqRead read1332; read1332.setName("M00967_44_000000000-A3K85_1_1103_25414_11829"); + read1332.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1332.setScores(scores); + ffastqReads.push_back(read1332); + FastqRead read1333; read1333.setName("M00967_44_000000000-A3K85_1_1103_14174_11972"); + read1333.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGAATTACTTGGTGTAAAGGGAGCGTAGGCGGGGATGCAAGTTGGGTGTCAAAACTACCGGCTCAACCGATAGTCGCACTCAAAACTGCAGCTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGCAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(27); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(14); read1333.setScores(scores); + ffastqReads.push_back(read1333); + FastqRead read1334; read1334.setName("M00967_44_000000000-A3K85_1_1103_19959_12064"); + read1334.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTTTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); read1334.setScores(scores); + ffastqReads.push_back(read1334); + FastqRead read1335; read1335.setName("M00967_44_000000000-A3K85_1_1103_11216_12085"); + read1335.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1335.setScores(scores); + ffastqReads.push_back(read1335); + FastqRead read1336; read1336.setName("M00967_44_000000000-A3K85_1_1103_5643_12168"); + read1336.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1336.setScores(scores); + ffastqReads.push_back(read1336); + FastqRead read1337; read1337.setName("M00967_44_000000000-A3K85_1_1103_27524_12240"); + read1337.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1337.setScores(scores); + ffastqReads.push_back(read1337); + FastqRead read1338; read1338.setName("M00967_44_000000000-A3K85_1_1103_2646_12241"); + read1338.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1338.setScores(scores); + ffastqReads.push_back(read1338); + FastqRead read1339; read1339.setName("M00967_44_000000000-A3K85_1_1103_28148_12280"); + read1339.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); 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scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1339.setScores(scores); + ffastqReads.push_back(read1339); + FastqRead read1340; read1340.setName("M00967_44_000000000-A3K85_1_1103_17326_12344"); + read1340.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1340.setScores(scores); + ffastqReads.push_back(read1340); + FastqRead read1341; read1341.setName("M00967_44_000000000-A3K85_1_1103_4277_12406"); + read1341.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTGAGTCAGTGGTCAAACTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1341.setScores(scores); + ffastqReads.push_back(read1341); + FastqRead read1342; read1342.setName("M00967_44_000000000-A3K85_1_1103_27645_12485"); + read1342.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGTATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1342.setScores(scores); + ffastqReads.push_back(read1342); + FastqRead read1343; read1343.setName("M00967_44_000000000-A3K85_1_1103_18470_12627"); + read1343.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1343.setScores(scores); + ffastqReads.push_back(read1343); + FastqRead read1344; read1344.setName("M00967_44_000000000-A3K85_1_1103_18626_12681"); + read1344.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1344.setScores(scores); + ffastqReads.push_back(read1344); + FastqRead read1345; read1345.setName("M00967_44_000000000-A3K85_1_1103_3599_12709"); + read1345.setSeq("TACGGCGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(29); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(25); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); read1345.setScores(scores); + ffastqReads.push_back(read1345); + FastqRead read1346; read1346.setName("M00967_44_000000000-A3K85_1_1103_13249_12790"); + read1346.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1347.setScores(scores); + ffastqReads.push_back(read1347); + FastqRead read1348; read1348.setName("M00967_44_000000000-A3K85_1_1103_13899_12833"); + read1348.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1348.setScores(scores); + ffastqReads.push_back(read1348); + FastqRead read1349; read1349.setName("M00967_44_000000000-A3K85_1_1103_19343_12844"); + read1349.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCGACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1349.setScores(scores); + ffastqReads.push_back(read1349); + FastqRead read1350; read1350.setName("M00967_44_000000000-A3K85_1_1103_22153_12850"); + read1350.setSeq("TACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1350.setScores(scores); + ffastqReads.push_back(read1350); + FastqRead read1351; read1351.setName("M00967_44_000000000-A3K85_1_1103_22165_12865"); + read1351.setSeq("TACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATATGAAATCCCCCGGCTCAACCTGGGAACTGCATCCGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAATTTTAGCGGTGAAATGCGTAGAGATCTGAAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(32); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); read1351.setScores(scores); + ffastqReads.push_back(read1351); + FastqRead read1352; read1352.setName("M00967_44_000000000-A3K85_1_1103_8493_12897"); + read1352.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1352.setScores(scores); + ffastqReads.push_back(read1352); + FastqRead read1353; read1353.setName("M00967_44_000000000-A3K85_1_1103_25193_12938"); + read1353.setSeq("TACGGAGGGAGCAAGCGTTGTTCGGAATGACTGAGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGGGTGGGGAGCAAAA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); 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scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); read1353.setScores(scores); + ffastqReads.push_back(read1353); + FastqRead read1354; read1354.setName("M00967_44_000000000-A3K85_1_1103_8277_12999"); + read1354.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1354.setScores(scores); + ffastqReads.push_back(read1354); + FastqRead read1355; read1355.setName("M00967_44_000000000-A3K85_1_1103_17589_13038"); + read1355.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1355.setScores(scores); + ffastqReads.push_back(read1355); + FastqRead read1356; read1356.setName("M00967_44_000000000-A3K85_1_1103_21424_13041"); + read1356.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1356.setScores(scores); + ffastqReads.push_back(read1356); + FastqRead read1357; read1357.setName("M00967_44_000000000-A3K85_1_1103_29129_13051"); + read1357.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); read1357.setScores(scores); + ffastqReads.push_back(read1357); + FastqRead read1358; read1358.setName("M00967_44_000000000-A3K85_1_1103_15983_13062"); + read1358.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAGAGCAAGTCGACTGTGAAATCTATGGGCTTAACCCATAGCTGCGATCGAAACTGTTCATCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAAATATTAGGAGGAACACCAATGGCGAAGGCGGCCTGCTGGGGCTTTACTGACGCTGAGGCTCGAAAGCGGGGGTAGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); read1358.setScores(scores); + ffastqReads.push_back(read1358); + FastqRead read1359; read1359.setName("M00967_44_000000000-A3K85_1_1103_9628_13096"); + read1359.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGAAGGCAAGTCAGATGTGAAATCTGGAGGCTCAACCTCCAAATTGCATTTGAAACTGTTTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1360.setScores(scores); + ffastqReads.push_back(read1360); + FastqRead read1361; read1361.setName("M00967_44_000000000-A3K85_1_1103_21168_13132"); + read1361.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCATTGGGCGTAAAGCGCGCGCAGGCGGACCGTTAAGCGGGACCTCTAATCTCAGGGCTCAACCTTGAGCCGGGTCCCGAACTGGCGTGTCTCGAGTTCGGTAGGGGAGATCGGAATTCCCGGTGTAGCGGTGGAATGCGCAGATATCGGGAAGAACACCGATGGCGAAGGCAGATCTCTGGGCCGCAACTGACGCTGAGGCGCGAAAGCTAGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1361.setScores(scores); + ffastqReads.push_back(read1361); + FastqRead read1362; read1362.setName("M00967_44_000000000-A3K85_1_1103_12621_13155"); + read1362.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1362.setScores(scores); + ffastqReads.push_back(read1362); + FastqRead read1363; read1363.setName("M00967_44_000000000-A3K85_1_1103_12671_13193"); + read1363.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1363.setScores(scores); + ffastqReads.push_back(read1363); + FastqRead read1364; read1364.setName("M00967_44_000000000-A3K85_1_1103_27001_13203"); + read1364.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGGAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); read1364.setScores(scores); + ffastqReads.push_back(read1364); + FastqRead read1365; read1365.setName("M00967_44_000000000-A3K85_1_1103_21002_13218"); + read1365.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGGCCAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1365.setScores(scores); + ffastqReads.push_back(read1365); + FastqRead read1366; read1366.setName("M00967_44_000000000-A3K85_1_1103_12418_13286"); + read1366.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1366.setScores(scores); + ffastqReads.push_back(read1366); + FastqRead read1367; read1367.setName("M00967_44_000000000-A3K85_1_1103_20111_13325"); + read1367.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGAGGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAAATGGTGTCCTAGGGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGGAGCTCATGCACGAAAGCGGGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(14); read1367.setScores(scores); + ffastqReads.push_back(read1367); + FastqRead read1368; read1368.setName("M00967_44_000000000-A3K85_1_1103_18931_13356"); + read1368.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1368.setScores(scores); + ffastqReads.push_back(read1368); + FastqRead read1369; read1369.setName("M00967_44_000000000-A3K85_1_1103_20955_13357"); + read1369.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1369.setScores(scores); + ffastqReads.push_back(read1369); + FastqRead read1370; read1370.setName("M00967_44_000000000-A3K85_1_1103_15513_13364"); + read1370.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGAGCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1370.setScores(scores); + ffastqReads.push_back(read1370); + FastqRead read1371; read1371.setName("M00967_44_000000000-A3K85_1_1103_5691_13436"); + read1371.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1371.setScores(scores); + ffastqReads.push_back(read1371); + FastqRead read1372; read1372.setName("M00967_44_000000000-A3K85_1_1103_13224_13547"); + read1372.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1372.setScores(scores); + ffastqReads.push_back(read1372); + FastqRead read1373; read1373.setName("M00967_44_000000000-A3K85_1_1103_23466_13547"); + read1373.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1373.setScores(scores); + ffastqReads.push_back(read1373); + FastqRead read1374; read1374.setName("M00967_44_000000000-A3K85_1_1103_14037_13671"); + read1374.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1374.setScores(scores); + ffastqReads.push_back(read1374); + FastqRead read1375; read1375.setName("M00967_44_000000000-A3K85_1_1103_4084_13679"); + read1375.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGAACTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTTACTGACGCTGAAGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(18); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1375.setScores(scores); + ffastqReads.push_back(read1375); + FastqRead read1376; read1376.setName("M00967_44_000000000-A3K85_1_1103_13846_13704"); + read1376.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1376.setScores(scores); + ffastqReads.push_back(read1376); + FastqRead read1377; read1377.setName("M00967_44_000000000-A3K85_1_1103_19629_13785"); + read1377.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCACAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1377.setScores(scores); + ffastqReads.push_back(read1377); + FastqRead read1378; read1378.setName("M00967_44_000000000-A3K85_1_1103_4118_13794"); + read1378.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGAAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1378.setScores(scores); + ffastqReads.push_back(read1378); + FastqRead read1379; read1379.setName("M00967_44_000000000-A3K85_1_1103_12631_13824"); + read1379.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGGATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); read1379.setScores(scores); + ffastqReads.push_back(read1379); + FastqRead read1380; read1380.setName("M00967_44_000000000-A3K85_1_1103_25822_13839"); + read1380.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTTGCTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1380.setScores(scores); + ffastqReads.push_back(read1380); + FastqRead read1381; read1381.setName("M00967_44_000000000-A3K85_1_1103_16752_13880"); + read1381.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1381.setScores(scores); + ffastqReads.push_back(read1381); + FastqRead read1382; read1382.setName("M00967_44_000000000-A3K85_1_1103_9333_13891"); + read1382.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCTGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1382.setScores(scores); + ffastqReads.push_back(read1382); + FastqRead read1383; read1383.setName("M00967_44_000000000-A3K85_1_1103_25479_13909"); + read1383.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1383.setScores(scores); + ffastqReads.push_back(read1383); + FastqRead read1384; read1384.setName("M00967_44_000000000-A3K85_1_1103_18882_13930"); + read1384.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1384.setScores(scores); + ffastqReads.push_back(read1384); + FastqRead read1385; read1385.setName("M00967_44_000000000-A3K85_1_1103_12963_13947"); + read1385.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(15); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1385.setScores(scores); + ffastqReads.push_back(read1385); + FastqRead read1386; read1386.setName("M00967_44_000000000-A3K85_1_1103_10852_13956"); + read1386.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGACTTGCAAGTCTGATGTGAAAATCCGGGGCCCAACCCCGGAACTGCATTGGAAACTGTATATCTAGAGTGTCGGAGAGGCAAGTGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1386.setScores(scores); + ffastqReads.push_back(read1386); + FastqRead read1387; read1387.setName("M00967_44_000000000-A3K85_1_1103_28014_13977"); + read1387.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1387.setScores(scores); + ffastqReads.push_back(read1387); + FastqRead read1388; read1388.setName("M00967_44_000000000-A3K85_1_1103_11398_14041"); + read1388.setSeq("TACGGAGGATGCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); read1389.setScores(scores); + ffastqReads.push_back(read1389); + FastqRead read1390; read1390.setName("M00967_44_000000000-A3K85_1_1103_14891_14067"); + read1390.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1390.setScores(scores); + ffastqReads.push_back(read1390); + FastqRead read1391; read1391.setName("M00967_44_000000000-A3K85_1_1103_18499_14078"); + read1391.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read1392; read1392.setName("M00967_44_000000000-A3K85_1_1103_25753_14096"); + read1392.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1392.setScores(scores); + ffastqReads.push_back(read1392); + FastqRead read1393; read1393.setName("M00967_44_000000000-A3K85_1_1103_21291_14099"); + read1393.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1393.setScores(scores); + ffastqReads.push_back(read1393); + FastqRead read1394; read1394.setName("M00967_44_000000000-A3K85_1_1103_26200_14110"); + read1394.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1394.setScores(scores); + ffastqReads.push_back(read1394); + FastqRead read1395; read1395.setName("M00967_44_000000000-A3K85_1_1103_6420_14143"); + read1395.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); read1395.setScores(scores); + ffastqReads.push_back(read1395); + FastqRead read1396; read1396.setName("M00967_44_000000000-A3K85_1_1103_18025_14186"); + read1396.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1396.setScores(scores); + ffastqReads.push_back(read1396); + FastqRead read1397; read1397.setName("M00967_44_000000000-A3K85_1_1103_10852_14188"); + read1397.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1397.setScores(scores); + ffastqReads.push_back(read1397); + FastqRead read1398; read1398.setName("M00967_44_000000000-A3K85_1_1103_25086_14222"); + read1398.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1398.setScores(scores); + ffastqReads.push_back(read1398); + FastqRead read1399; read1399.setName("M00967_44_000000000-A3K85_1_1103_3153_14243"); + read1399.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); 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scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(28); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1399.setScores(scores); + ffastqReads.push_back(read1399); + FastqRead read1400; read1400.setName("M00967_44_000000000-A3K85_1_1103_10267_14278"); + read1400.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTTGCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGAACTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGAATTCCCGGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(28); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1400.setScores(scores); + ffastqReads.push_back(read1400); + FastqRead read1401; read1401.setName("M00967_44_000000000-A3K85_1_1103_14005_14307"); + read1401.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1401.setScores(scores); + ffastqReads.push_back(read1401); + FastqRead read1402; read1402.setName("M00967_44_000000000-A3K85_1_1103_16770_14355"); + read1402.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACACTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1402.setScores(scores); + ffastqReads.push_back(read1402); + FastqRead read1403; read1403.setName("M00967_44_000000000-A3K85_1_1103_5100_14523"); + read1403.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1403.setScores(scores); + ffastqReads.push_back(read1403); + FastqRead read1404; read1404.setName("M00967_44_000000000-A3K85_1_1103_21900_14531"); + read1404.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read1404.setScores(scores); + ffastqReads.push_back(read1404); + FastqRead read1405; read1405.setName("M00967_44_000000000-A3K85_1_1103_25997_14542"); + read1405.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1405.setScores(scores); + ffastqReads.push_back(read1405); + FastqRead read1406; read1406.setName("M00967_44_000000000-A3K85_1_1103_9097_14585"); + read1406.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1406.setScores(scores); + ffastqReads.push_back(read1406); + FastqRead read1407; read1407.setName("M00967_44_000000000-A3K85_1_1103_27889_14599"); + read1407.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); read1407.setScores(scores); + ffastqReads.push_back(read1407); + FastqRead read1408; read1408.setName("M00967_44_000000000-A3K85_1_1103_9210_14632"); + read1408.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1408.setScores(scores); + ffastqReads.push_back(read1408); + FastqRead read1409; read1409.setName("M00967_44_000000000-A3K85_1_1103_23194_14675"); + read1409.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1409.setScores(scores); + ffastqReads.push_back(read1409); + FastqRead read1410; read1410.setName("M00967_44_000000000-A3K85_1_1103_4510_14714"); + read1410.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACGGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1410.setScores(scores); + ffastqReads.push_back(read1410); + FastqRead read1411; read1411.setName("M00967_44_000000000-A3K85_1_1103_20807_14776"); + read1411.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1411.setScores(scores); + ffastqReads.push_back(read1411); + FastqRead read1412; read1412.setName("M00967_44_000000000-A3K85_1_1103_8080_14833"); + read1412.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1412.setScores(scores); + ffastqReads.push_back(read1412); + FastqRead read1413; read1413.setName("M00967_44_000000000-A3K85_1_1103_2755_14834"); + read1413.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1413.setScores(scores); + ffastqReads.push_back(read1413); + FastqRead read1414; read1414.setName("M00967_44_000000000-A3K85_1_1103_24658_14877"); + read1414.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1415.setScores(scores); + ffastqReads.push_back(read1415); + FastqRead read1416; read1416.setName("M00967_44_000000000-A3K85_1_1103_26404_15045"); + read1416.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTTTGCAAGTCTGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTGGAAACTGTATGACTGGGGGGCAGGAGGGGTAAGGGGAATTCCTATTGTAGCGGGGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); 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scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1416.setScores(scores); + ffastqReads.push_back(read1416); + FastqRead read1417; read1417.setName("M00967_44_000000000-A3K85_1_1103_29713_15047"); + read1417.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1417.setScores(scores); + ffastqReads.push_back(read1417); + FastqRead read1418; read1418.setName("M00967_44_000000000-A3K85_1_1103_13164_15106"); + read1418.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1418.setScores(scores); + ffastqReads.push_back(read1418); + FastqRead read1419; read1419.setName("M00967_44_000000000-A3K85_1_1103_16186_15152"); + read1419.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1419.setScores(scores); + ffastqReads.push_back(read1419); + FastqRead read1420; read1420.setName("M00967_44_000000000-A3K85_1_1103_3458_15207"); + read1420.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACACTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(26); read1420.setScores(scores); + ffastqReads.push_back(read1420); + FastqRead read1421; read1421.setName("M00967_44_000000000-A3K85_1_1103_3440_15209"); + read1421.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1421.setScores(scores); + ffastqReads.push_back(read1421); + FastqRead read1422; read1422.setName("M00967_44_000000000-A3K85_1_1103_5085_15245"); + read1422.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1422.setScores(scores); + ffastqReads.push_back(read1422); + FastqRead read1423; read1423.setName("M00967_44_000000000-A3K85_1_1103_13550_15273"); + read1423.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); read1423.setScores(scores); + ffastqReads.push_back(read1423); + FastqRead read1424; read1424.setName("M00967_44_000000000-A3K85_1_1103_24680_15378"); + read1424.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1424.setScores(scores); + ffastqReads.push_back(read1424); + FastqRead read1425; read1425.setName("M00967_44_000000000-A3K85_1_1103_5465_15412"); + read1425.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1425.setScores(scores); + ffastqReads.push_back(read1425); + FastqRead read1426; read1426.setName("M00967_44_000000000-A3K85_1_1103_10672_15541"); + read1426.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1426.setScores(scores); + ffastqReads.push_back(read1426); + FastqRead read1427; read1427.setName("M00967_44_000000000-A3K85_1_1103_20468_15561"); + read1427.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1427.setScores(scores); + ffastqReads.push_back(read1427); + FastqRead read1428; read1428.setName("M00967_44_000000000-A3K85_1_1103_28043_15697"); + read1428.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1428.setScores(scores); + ffastqReads.push_back(read1428); + FastqRead read1429; read1429.setName("M00967_44_000000000-A3K85_1_1103_14447_15725"); + read1429.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1429.setScores(scores); + ffastqReads.push_back(read1429); + FastqRead read1430; read1430.setName("M00967_44_000000000-A3K85_1_1103_17439_15731"); + read1430.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1430.setScores(scores); + ffastqReads.push_back(read1430); + FastqRead read1431; read1431.setName("M00967_44_000000000-A3K85_1_1103_24659_15735"); + read1431.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTGTAGCTGGAGTGTCGGAGAGGCAGGCGGGATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCCGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1431.setScores(scores); + ffastqReads.push_back(read1431); + FastqRead read1432; read1432.setName("M00967_44_000000000-A3K85_1_1103_7472_15735"); + read1432.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1432.setScores(scores); + ffastqReads.push_back(read1432); + FastqRead read1433; read1433.setName("M00967_44_000000000-A3K85_1_1103_12919_15788"); + read1433.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); read1433.setScores(scores); + ffastqReads.push_back(read1433); + FastqRead read1434; read1434.setName("M00967_44_000000000-A3K85_1_1103_16902_15833"); + read1434.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1434.setScores(scores); + ffastqReads.push_back(read1434); + FastqRead read1435; read1435.setName("M00967_44_000000000-A3K85_1_1103_10202_15911"); + read1435.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1435.setScores(scores); + ffastqReads.push_back(read1435); + FastqRead read1436; read1436.setName("M00967_44_000000000-A3K85_1_1103_14008_15997"); + read1436.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTAAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1436.setScores(scores); + ffastqReads.push_back(read1436); + FastqRead read1437; read1437.setName("M00967_44_000000000-A3K85_1_1103_15658_16063"); + read1437.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTTGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGAAGATGACTGACGTTGAGGCTCGAAAGGGTGGGGGGCCAAAA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); read1437.setScores(scores); + ffastqReads.push_back(read1437); + FastqRead read1438; read1438.setName("M00967_44_000000000-A3K85_1_1103_6338_16092"); + read1438.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAGCCAAGTCAGCTGTGAAAACTACGGGCTTAACCTGTAGACTGCAGTTGAAACTGGCTTTCTTGAGTGAAGTAGAGGTTGGCGGAATTCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCGGTGGCGAAGGCGGCCAACTGGGCTTTAACTGACGCTGAGGCTCGAAAGGGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1438.setScores(scores); + ffastqReads.push_back(read1438); + FastqRead read1439; read1439.setName("M00967_44_000000000-A3K85_1_1103_13096_16098"); + read1439.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGTGAGTAGGCGGCATGGTAAGCCAGATGTGAAAGCCTTGGGCTTAACCCGAGGATTGCATTTGGAACTATCAAGCTGGAGTACAGGAGAGGAAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTTCTGGACTGAAACTGACGCTGAGGCACGAAAGCGTGGGGAGCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1439.setScores(scores); + ffastqReads.push_back(read1439); + FastqRead read1440; read1440.setName("M00967_44_000000000-A3K85_1_1103_19906_16099"); + read1440.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGGAACGCAAGTCAGGCGTGAAATACCGGGGCTCAACTCCGGGGCTGCGCTTGAAACTGTGTTTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGGGATGCGTAGATATTAGGAGGAACACCAGTGGCGAAAGCGGCCCGCTGGGCTTTTACTGACGCTGATGGACGAAAGCATGGGGGGCCAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); read1440.setScores(scores); + ffastqReads.push_back(read1440); + FastqRead read1441; read1441.setName("M00967_44_000000000-A3K85_1_1103_16176_16125"); + read1441.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1441.setScores(scores); + ffastqReads.push_back(read1441); + FastqRead read1442; read1442.setName("M00967_44_000000000-A3K85_1_1103_14624_16174"); + read1442.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCAGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); read1442.setScores(scores); + ffastqReads.push_back(read1442); + FastqRead read1443; read1443.setName("M00967_44_000000000-A3K85_1_1103_15776_16234"); + read1443.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1444.setScores(scores); + ffastqReads.push_back(read1444); + FastqRead read1445; read1445.setName("M00967_44_000000000-A3K85_1_1103_7437_16302"); + read1445.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(19); scores.push_back(32); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(37); read1445.setScores(scores); + ffastqReads.push_back(read1445); + FastqRead read1446; read1446.setName("M00967_44_000000000-A3K85_1_1103_4359_16337"); + read1446.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGCGTGTAGGCGGATTGTTAAGTCAGTTGTGAAAGCTTGCGGCTCAACCGCCAAATTGCAGTTGAAACTGGTGGTCTTGAGTACCGTAGAGGCGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATTAGGAAGAACACCGATTGCGAAGGCGGCTCGCTGGACGGCAACTGACACTGATGCTCGAAAGTGTGGGGATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(12); read1446.setScores(scores); + ffastqReads.push_back(read1446); + FastqRead read1447; read1447.setName("M00967_44_000000000-A3K85_1_1103_22494_16376"); + read1447.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1447.setScores(scores); + ffastqReads.push_back(read1447); + FastqRead read1448; read1448.setName("M00967_44_000000000-A3K85_1_1103_16889_16426"); + read1448.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1448.setScores(scores); + ffastqReads.push_back(read1448); + FastqRead read1449; read1449.setName("M00967_44_000000000-A3K85_1_1103_21982_16444"); + read1449.setSeq("TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCCTGCCAAGTCTGATGTGAAATACCGGGGCTCAACCCCGGGGCTGCATTGGAAACTGGCAGGCTGGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGGGAAATGCGTAGATATTAGGAGGAACACCAGGGGCGAAGGCGGCCTGCTGGACGATGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1449.setScores(scores); + ffastqReads.push_back(read1449); + FastqRead read1450; read1450.setName("M00967_44_000000000-A3K85_1_1103_10570_16480"); + read1450.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(32); read1450.setScores(scores); + ffastqReads.push_back(read1450); + FastqRead read1451; read1451.setName("M00967_44_000000000-A3K85_1_1103_18948_16551"); + read1451.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1451.setScores(scores); + ffastqReads.push_back(read1451); + FastqRead read1452; read1452.setName("M00967_44_000000000-A3K85_1_1103_14363_16559"); + read1452.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); read1452.setScores(scores); + ffastqReads.push_back(read1452); + FastqRead read1453; read1453.setName("M00967_44_000000000-A3K85_1_1103_28317_16587"); + read1453.setSeq("TACGTAGGATCCGAGCATTATCCGGAGTGACTGGGTGTAAAGAGTTGCGTAGGTGGCATAGTAAGTAGCTAGTGAAATCTGGTGGCTCAACCATTCAGACTATTAGCTAAACTGCTAAGCTCGAGACCGTTAGGGGTAACTGGAATTTCTAGTGTAGGAGTGAAATCCGTAGATATTAGAAGGAACACCGATAGCGTAGGCAGGTTACTGGGACGGTTCTGACACTAAGGCACGAAAGCGTAGGGAGCAAA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1453.setScores(scores); + ffastqReads.push_back(read1453); + FastqRead read1454; read1454.setName("M00967_44_000000000-A3K85_1_1103_24651_16640"); + read1454.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGTGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1454.setScores(scores); + ffastqReads.push_back(read1454); + FastqRead read1455; read1455.setName("M00967_44_000000000-A3K85_1_1103_11996_16826"); + read1455.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCGATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTTGCTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1455.setScores(scores); + ffastqReads.push_back(read1455); + FastqRead read1456; read1456.setName("M00967_44_000000000-A3K85_1_1103_12207_16849"); + read1456.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); read1458.setScores(scores); + ffastqReads.push_back(read1458); + FastqRead read1459; read1459.setName("M00967_44_000000000-A3K85_1_1103_5954_17004"); + read1459.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1459.setScores(scores); + ffastqReads.push_back(read1459); + FastqRead read1460; read1460.setName("M00967_44_000000000-A3K85_1_1103_5941_17020"); + read1460.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCCCGGGCTCAACCCGTGAACTGCATTTGAAATTGTTTCCCTTGAGTGTCGGAGAGGACATCGGAATTCCTTTTGTAGCGGTGAAATGCGTAGATATAAGGAAGAATACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGAGAGCAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(31); scores.push_back(37); scores.push_back(18); scores.push_back(20); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(20); scores.push_back(32); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(18); scores.push_back(17); scores.push_back(17); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(15); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(30); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(30); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(14); scores.push_back(28); scores.push_back(15); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1460.setScores(scores); + ffastqReads.push_back(read1460); + FastqRead read1461; read1461.setName("M00967_44_000000000-A3K85_1_1103_17338_17042"); + read1461.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1461.setScores(scores); + ffastqReads.push_back(read1461); + FastqRead read1462; read1462.setName("M00967_44_000000000-A3K85_1_1103_24486_17054"); + read1462.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTAAAACTGGCAGTCTTGAGTACAGAAGAGGTGGCCGGAAGTCGGGGTGTAGCGGTGAAATGATTGATTATCACGAAAAACTCCGATTGCGAAGGAAGCTCACTGCACTGCAACTGACACTGATGCTCGAAAGGGTGGGTATCAAACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(17); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(19); scores.push_back(19); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(19); scores.push_back(18); scores.push_back(37); scores.push_back(19); scores.push_back(19); scores.push_back(35); scores.push_back(38); scores.push_back(19); scores.push_back(18); scores.push_back(17); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(17); scores.push_back(14); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(17); scores.push_back(14); scores.push_back(30); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(16); scores.push_back(16); scores.push_back(13); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1462.setScores(scores); + ffastqReads.push_back(read1462); + FastqRead read1463; read1463.setName("M00967_44_000000000-A3K85_1_1103_28355_17076"); + read1463.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1463.setScores(scores); + ffastqReads.push_back(read1463); + FastqRead read1464; read1464.setName("M00967_44_000000000-A3K85_1_1103_9052_17102"); + read1464.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); read1464.setScores(scores); + ffastqReads.push_back(read1464); + FastqRead read1465; read1465.setName("M00967_44_000000000-A3K85_1_1103_3555_17196"); + read1465.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(32); 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scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1465.setScores(scores); + ffastqReads.push_back(read1465); + FastqRead read1466; read1466.setName("M00967_44_000000000-A3K85_1_1103_21030_17291"); + read1466.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1466.setScores(scores); + ffastqReads.push_back(read1466); + FastqRead read1467; read1467.setName("M00967_44_000000000-A3K85_1_1103_28056_17323"); + read1467.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); read1467.setScores(scores); + ffastqReads.push_back(read1467); + FastqRead read1468; read1468.setName("M00967_44_000000000-A3K85_1_1103_24986_17366"); + read1468.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); read1468.setScores(scores); + ffastqReads.push_back(read1468); + FastqRead read1469; read1469.setName("M00967_44_000000000-A3K85_1_1103_8292_17380"); + read1469.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGGACGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1469.setScores(scores); + ffastqReads.push_back(read1469); + FastqRead read1470; read1470.setName("M00967_44_000000000-A3K85_1_1103_24459_17391"); + read1470.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGTGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(17); scores.push_back(16); scores.push_back(14); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1470.setScores(scores); + ffastqReads.push_back(read1470); + FastqRead read1471; read1471.setName("M00967_44_000000000-A3K85_1_1103_25354_17418"); + read1471.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1471.setScores(scores); + ffastqReads.push_back(read1471); + FastqRead read1472; read1472.setName("M00967_44_000000000-A3K85_1_1103_22657_17476"); + read1472.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1472.setScores(scores); + ffastqReads.push_back(read1472); + FastqRead read1473; read1473.setName("M00967_44_000000000-A3K85_1_1103_14323_17529"); + read1473.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1473.setScores(scores); + ffastqReads.push_back(read1473); + FastqRead read1474; read1474.setName("M00967_44_000000000-A3K85_1_1103_3837_17534"); + read1474.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1474.setScores(scores); + ffastqReads.push_back(read1474); + FastqRead read1475; read1475.setName("M00967_44_000000000-A3K85_1_1103_25070_17572"); + read1475.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1475.setScores(scores); + ffastqReads.push_back(read1475); + FastqRead read1476; read1476.setName("M00967_44_000000000-A3K85_1_1103_18018_17587"); + read1476.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1476.setScores(scores); + ffastqReads.push_back(read1476); + FastqRead read1477; read1477.setName("M00967_44_000000000-A3K85_1_1103_25269_17592"); + read1477.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1477.setScores(scores); + ffastqReads.push_back(read1477); + FastqRead read1478; read1478.setName("M00967_44_000000000-A3K85_1_1103_13961_17626"); + read1478.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1478.setScores(scores); + ffastqReads.push_back(read1478); + FastqRead read1479; read1479.setName("M00967_44_000000000-A3K85_1_1103_25526_17629"); + read1479.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1479.setScores(scores); + ffastqReads.push_back(read1479); + FastqRead read1480; read1480.setName("M00967_44_000000000-A3K85_1_1103_17555_17634"); + read1480.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1480.setScores(scores); + ffastqReads.push_back(read1480); + FastqRead read1481; read1481.setName("M00967_44_000000000-A3K85_1_1103_3927_17636"); + read1481.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAAATGGTTTTCTTGAGTGAGCGAGAAGGATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCCCGAAAGTGGGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(28); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(29); scores.push_back(14); read1481.setScores(scores); + ffastqReads.push_back(read1481); + FastqRead read1482; read1482.setName("M00967_44_000000000-A3K85_1_1103_9748_17663"); + read1482.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTTCTGGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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+ FastqRead read1483; read1483.setName("M00967_44_000000000-A3K85_1_1103_27330_17705"); + read1483.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAGG"); + scores.clear(); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1483.setScores(scores); + ffastqReads.push_back(read1483); + FastqRead read1484; read1484.setName("M00967_44_000000000-A3K85_1_1103_15720_17744"); + read1484.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1484.setScores(scores); + ffastqReads.push_back(read1484); + FastqRead read1485; read1485.setName("M00967_44_000000000-A3K85_1_1103_7188_17759"); + read1485.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGTCTGAAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTTTGGAAACTGTATAGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); 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scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); read1485.setScores(scores); + ffastqReads.push_back(read1485); + FastqRead read1486; read1486.setName("M00967_44_000000000-A3K85_1_1103_11077_17791"); + read1486.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1486.setScores(scores); + ffastqReads.push_back(read1486); + FastqRead read1487; read1487.setName("M00967_44_000000000-A3K85_1_1103_8798_17809"); + read1487.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTTACTGACGCTGAGGCTCGAAAGCGTGGGTAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1487.setScores(scores); + ffastqReads.push_back(read1487); + FastqRead read1488; read1488.setName("M00967_44_000000000-A3K85_1_1103_19257_17877"); + read1488.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1488.setScores(scores); + ffastqReads.push_back(read1488); + FastqRead read1489; read1489.setName("M00967_44_000000000-A3K85_1_1103_26521_17938"); + read1489.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1489.setScores(scores); + ffastqReads.push_back(read1489); + FastqRead read1490; read1490.setName("M00967_44_000000000-A3K85_1_1103_5451_17941"); + read1490.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); 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scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1490.setScores(scores); + ffastqReads.push_back(read1490); + FastqRead read1491; read1491.setName("M00967_44_000000000-A3K85_1_1103_27385_18070"); + read1491.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); read1491.setScores(scores); + ffastqReads.push_back(read1491); + FastqRead read1492; read1492.setName("M00967_44_000000000-A3K85_1_1103_26389_18095"); + read1492.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1494.setScores(scores); + ffastqReads.push_back(read1494); + FastqRead read1495; read1495.setName("M00967_44_000000000-A3K85_1_1103_14027_18284"); + read1495.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1495.setScores(scores); + ffastqReads.push_back(read1495); + FastqRead read1496; read1496.setName("M00967_44_000000000-A3K85_1_1103_4366_18310"); + read1496.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCGCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1496.setScores(scores); + ffastqReads.push_back(read1496); + FastqRead read1497; read1497.setName("M00967_44_000000000-A3K85_1_1103_3010_18437"); + read1497.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); read1497.setScores(scores); + ffastqReads.push_back(read1497); + FastqRead read1498; read1498.setName("M00967_44_000000000-A3K85_1_1103_26342_18497"); + read1498.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1498.setScores(scores); + ffastqReads.push_back(read1498); + FastqRead read1499; read1499.setName("M00967_44_000000000-A3K85_1_1103_22949_18629"); + read1499.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1499.setScores(scores); + ffastqReads.push_back(read1499); + FastqRead read1500; read1500.setName("M00967_44_000000000-A3K85_1_1103_28333_18654"); + read1500.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGCACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGCTAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(18); scores.push_back(18); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(18); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(16); scores.push_back(27); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(28); scores.push_back(16); scores.push_back(27); scores.push_back(28); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(30); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1500.setScores(scores); + ffastqReads.push_back(read1500); + FastqRead read1501; read1501.setName("M00967_44_000000000-A3K85_1_1103_21943_18693"); + read1501.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCTTTTACTGACGCTGAGGCTCGAAAGCGTGGGTAGCAAACGG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1501.setScores(scores); + ffastqReads.push_back(read1501); + FastqRead read1502; read1502.setName("M00967_44_000000000-A3K85_1_1103_12705_18743"); + read1502.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGATATTAAGTTGAATGTATAAACTACCGGCTTAACCGATAGAAGCGTTCAAAACTGATATTCTTGAGTGAAGTAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGGGCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(28); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1502.setScores(scores); + ffastqReads.push_back(read1502); + FastqRead read1503; read1503.setName("M00967_44_000000000-A3K85_1_1103_19513_18746"); + read1503.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1503.setScores(scores); + ffastqReads.push_back(read1503); + FastqRead read1504; read1504.setName("M00967_44_000000000-A3K85_1_1103_5488_18772"); + read1504.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(14); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(12); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(28); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(27); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(14); read1504.setScores(scores); + ffastqReads.push_back(read1504); + FastqRead read1505; read1505.setName("M00967_44_000000000-A3K85_1_1103_7716_18803"); + read1505.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1505.setScores(scores); + ffastqReads.push_back(read1505); + FastqRead read1506; read1506.setName("M00967_44_000000000-A3K85_1_1103_5935_18822"); + read1506.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1506.setScores(scores); + ffastqReads.push_back(read1506); + FastqRead read1507; read1507.setName("M00967_44_000000000-A3K85_1_1103_23321_18830"); + read1507.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1507.setScores(scores); + ffastqReads.push_back(read1507); + FastqRead read1508; read1508.setName("M00967_44_000000000-A3K85_1_1103_15273_18842"); + read1508.setSeq("TACGTAGGGAGCAAGCGTTGTTCGGAATGACTGGGCGTAAAGGGTGCGTAGGCGGTTGTACAAGTTAGAAGTGAAATACCCAGGGCTTAACTCGGGTGCTGCTTCTAAAACTGTATGACTTGAGTGCAGTAGAGGTTAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGGCTAACTGGACTGCAACTGACGCTGAGGCACGAAAGTGTGGGGAGCAAA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); read1508.setScores(scores); + ffastqReads.push_back(read1508); + FastqRead read1509; read1509.setName("M00967_44_000000000-A3K85_1_1103_17511_18920"); + read1509.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1509.setScores(scores); + ffastqReads.push_back(read1509); + FastqRead read1510; read1510.setName("M00967_44_000000000-A3K85_1_1103_7018_18928"); + read1510.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1510.setScores(scores); + ffastqReads.push_back(read1510); + FastqRead read1511; read1511.setName("M00967_44_000000000-A3K85_1_1103_27978_18943"); + read1511.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1511.setScores(scores); + ffastqReads.push_back(read1511); + FastqRead read1512; read1512.setName("M00967_44_000000000-A3K85_1_1103_9670_19013"); + read1512.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1512.setScores(scores); + ffastqReads.push_back(read1512); + FastqRead read1513; read1513.setName("M00967_44_000000000-A3K85_1_1103_23081_19144"); + read1513.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGGACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCCCGAAAGTGCGGGGGTCCAAACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(17); scores.push_back(19); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(19); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(28); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1513.setScores(scores); + ffastqReads.push_back(read1513); + FastqRead read1514; read1514.setName("M00967_44_000000000-A3K85_1_1103_24434_19183"); + read1514.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1514.setScores(scores); + ffastqReads.push_back(read1514); + FastqRead read1515; read1515.setName("M00967_44_000000000-A3K85_1_1103_17019_19190"); + read1515.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1515.setScores(scores); + ffastqReads.push_back(read1515); + FastqRead read1516; read1516.setName("M00967_44_000000000-A3K85_1_1103_10311_19219"); + read1516.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGGGCGCAGACGGCAGCGCAAGCCAGGAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTCTTGGAACTGCGCGGCTGGAGTGCAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCCTGCTGGACTGCGACTGACGTTGAGGCCCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1516.setScores(scores); + ffastqReads.push_back(read1516); + FastqRead read1517; read1517.setName("M00967_44_000000000-A3K85_1_1103_24155_19279"); + read1517.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1517.setScores(scores); + ffastqReads.push_back(read1517); + FastqRead read1518; read1518.setName("M00967_44_000000000-A3K85_1_1103_22758_19302"); + read1518.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(37); read1518.setScores(scores); + ffastqReads.push_back(read1518); + FastqRead read1519; read1519.setName("M00967_44_000000000-A3K85_1_1103_20150_19314"); + read1519.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1519.setScores(scores); + ffastqReads.push_back(read1519); + FastqRead read1520; read1520.setName("M00967_44_000000000-A3K85_1_1103_2960_19448"); + read1520.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTATGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1520.setScores(scores); + ffastqReads.push_back(read1520); + FastqRead read1521; read1521.setName("M00967_44_000000000-A3K85_1_1103_18351_19461"); + read1521.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1521.setScores(scores); + ffastqReads.push_back(read1521); + FastqRead read1522; read1522.setName("M00967_44_000000000-A3K85_1_1103_19714_19498"); + read1522.setSeq("TACGTAGGGGGCGAGCGTTGTCCGGAATGACTGGGCGTAAAGGGAGTGTAGGCGGCTCTTTAAGTTATATGTGAAATCCCGCGGCTTAACCGTGGAAGTGCATATAAAACTGGGGAGCTGGAGTGCAGGAGAGGTGAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAAGAACACCGGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1522.setScores(scores); + ffastqReads.push_back(read1522); + FastqRead read1523; read1523.setName("M00967_44_000000000-A3K85_1_1103_9547_19513"); + read1523.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTTAACCGCGGAACTGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1523.setScores(scores); + ffastqReads.push_back(read1523); + FastqRead read1524; read1524.setName("M00967_44_000000000-A3K85_1_1103_22936_19518"); + read1524.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1524.setScores(scores); + ffastqReads.push_back(read1524); + FastqRead read1525; read1525.setName("M00967_44_000000000-A3K85_1_1103_9506_19572"); + read1525.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGTCTGAAGTGAAAGCCCAGGGCTCAACCCTGGGACTGCTTTGGAAACTGTGGAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1525.setScores(scores); + ffastqReads.push_back(read1525); + FastqRead read1526; read1526.setName("M00967_44_000000000-A3K85_1_1103_6680_19574"); + read1526.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGATTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1526.setScores(scores); + ffastqReads.push_back(read1526); + FastqRead read1527; read1527.setName("M00967_44_000000000-A3K85_1_1103_19275_19601"); + read1527.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1527.setScores(scores); + ffastqReads.push_back(read1527); + FastqRead read1528; read1528.setName("M00967_44_000000000-A3K85_1_1103_22951_19624"); + read1528.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1528.setScores(scores); + ffastqReads.push_back(read1528); + FastqRead read1529; read1529.setName("M00967_44_000000000-A3K85_1_1103_8019_19624"); + read1529.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1529.setScores(scores); + ffastqReads.push_back(read1529); + FastqRead read1530; read1530.setName("M00967_44_000000000-A3K85_1_1103_23352_19628"); + read1530.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(30); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); read1530.setScores(scores); + ffastqReads.push_back(read1530); + FastqRead read1531; read1531.setName("M00967_44_000000000-A3K85_1_1103_12999_19660"); + read1531.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(29); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1531.setScores(scores); + ffastqReads.push_back(read1531); + FastqRead read1532; read1532.setName("M00967_44_000000000-A3K85_1_1103_3950_19678"); + read1532.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); read1532.setScores(scores); + ffastqReads.push_back(read1532); + FastqRead read1533; read1533.setName("M00967_44_000000000-A3K85_1_1103_15632_19680"); + read1533.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1533.setScores(scores); + ffastqReads.push_back(read1533); + FastqRead read1534; read1534.setName("M00967_44_000000000-A3K85_1_1103_27326_19724"); + read1534.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCATTTGAAACTGGCAGTCTTGAGTACAGAAGAGGAGGGCGGATTTCGTGTGGAAGCGTTGAAATGCTTAATAACCACGAAGAACTCCATTGGCGAAGGCACCTCACTGGACCGCAACGGACACTGATGCTCAAAAGTGTGGGTACCAAACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(19); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1534.setScores(scores); + ffastqReads.push_back(read1534); + FastqRead read1535; read1535.setName("M00967_44_000000000-A3K85_1_1103_23541_19771"); + read1535.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1535.setScores(scores); + ffastqReads.push_back(read1535); + FastqRead read1536; read1536.setName("M00967_44_000000000-A3K85_1_1103_19202_19794"); + read1536.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1536.setScores(scores); + ffastqReads.push_back(read1536); + FastqRead read1537; read1537.setName("M00967_44_000000000-A3K85_1_1103_18682_19804"); + read1537.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGGGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(25); read1537.setScores(scores); + ffastqReads.push_back(read1537); + FastqRead read1538; read1538.setName("M00967_44_000000000-A3K85_1_1103_14671_19841"); + read1538.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1538.setScores(scores); + ffastqReads.push_back(read1538); + FastqRead read1539; read1539.setName("M00967_44_000000000-A3K85_1_1103_5340_19882"); + read1539.setSeq("TACGTAGGCGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(19); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1539.setScores(scores); + ffastqReads.push_back(read1539); + FastqRead read1540; read1540.setName("M00967_44_000000000-A3K85_1_1103_11028_19930"); + read1540.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(14); read1540.setScores(scores); + ffastqReads.push_back(read1540); + FastqRead read1541; read1541.setName("M00967_44_000000000-A3K85_1_1103_15653_20046"); + read1541.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1541.setScores(scores); + ffastqReads.push_back(read1541); + FastqRead read1542; read1542.setName("M00967_44_000000000-A3K85_1_1103_14597_20151"); + read1542.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(27); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); read1542.setScores(scores); + ffastqReads.push_back(read1542); + FastqRead read1543; read1543.setName("M00967_44_000000000-A3K85_1_1103_10784_20157"); + read1543.setSeq("TACGTAGGAGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTGCGTAGGTGGTTTGACAAGTTGGTAGCGTAACTCCGAGGCTTAACCTCGGCACTACTACCAAAACTGTTGGACTCGAGTGCAGGAGGGGCAAATGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGATTTGCTGGACTGTAACTGACACTGAGGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1543.setScores(scores); + ffastqReads.push_back(read1543); + FastqRead read1544; read1544.setName("M00967_44_000000000-A3K85_1_1103_22277_20204"); + read1544.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1544.setScores(scores); + ffastqReads.push_back(read1544); + FastqRead read1545; read1545.setName("M00967_44_000000000-A3K85_1_1103_4683_20232"); + read1545.setSeq("TACGTAGGAGGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1545.setScores(scores); + ffastqReads.push_back(read1545); + FastqRead read1546; read1546.setName("M00967_44_000000000-A3K85_1_1103_7541_20239"); + read1546.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1546.setScores(scores); + ffastqReads.push_back(read1546); + FastqRead read1547; read1547.setName("M00967_44_000000000-A3K85_1_1103_18556_20305"); + read1547.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1548.setScores(scores); + ffastqReads.push_back(read1548); + FastqRead read1549; read1549.setName("M00967_44_000000000-A3K85_1_1103_17409_20416"); + read1549.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1549.setScores(scores); + ffastqReads.push_back(read1549); + FastqRead read1550; read1550.setName("M00967_44_000000000-A3K85_1_1103_17395_20528"); + read1550.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGACCACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCCCGAAAGCGGGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(37); 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scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); read1550.setScores(scores); + ffastqReads.push_back(read1550); + FastqRead read1551; read1551.setName("M00967_44_000000000-A3K85_1_1103_10583_20564"); + read1551.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(29); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1551.setScores(scores); + ffastqReads.push_back(read1551); + FastqRead read1552; read1552.setName("M00967_44_000000000-A3K85_1_1103_28474_20611"); + read1552.setSeq("TACNGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(2); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1552.setScores(scores); + ffastqReads.push_back(read1552); + FastqRead read1553; read1553.setName("M00967_44_000000000-A3K85_1_1103_4930_20613"); + read1553.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1553.setScores(scores); + ffastqReads.push_back(read1553); + FastqRead read1554; read1554.setName("M00967_44_000000000-A3K85_1_1103_26491_20615"); + read1554.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1554.setScores(scores); + ffastqReads.push_back(read1554); + FastqRead read1555; read1555.setName("M00967_44_000000000-A3K85_1_1103_20367_20617"); + read1555.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1555.setScores(scores); + ffastqReads.push_back(read1555); + FastqRead read1556; read1556.setName("M00967_44_000000000-A3K85_1_1103_3566_20620"); + read1556.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGGACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGACGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(18); scores.push_back(17); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(27); scores.push_back(15); scores.push_back(28); scores.push_back(35); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1556.setScores(scores); + ffastqReads.push_back(read1556); + FastqRead read1557; read1557.setName("M00967_44_000000000-A3K85_1_1103_11051_20624"); + read1557.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); read1557.setScores(scores); + ffastqReads.push_back(read1557); + FastqRead read1558; read1558.setName("M00967_44_000000000-A3K85_1_1103_14737_20726"); + read1558.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); read1558.setScores(scores); + ffastqReads.push_back(read1558); + FastqRead read1559; read1559.setName("M00967_44_000000000-A3K85_1_1103_16867_20769"); + read1559.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(37); read1559.setScores(scores); + ffastqReads.push_back(read1559); + FastqRead read1560; read1560.setName("M00967_44_000000000-A3K85_1_1103_13724_20774"); + read1560.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1560.setScores(scores); + ffastqReads.push_back(read1560); + FastqRead read1561; read1561.setName("M00967_44_000000000-A3K85_1_1103_16837_20816"); + read1561.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGTCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1561.setScores(scores); + ffastqReads.push_back(read1561); + FastqRead read1562; read1562.setName("M00967_44_000000000-A3K85_1_1103_7611_20874"); + read1562.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read1562.setScores(scores); + ffastqReads.push_back(read1562); + FastqRead read1563; read1563.setName("M00967_44_000000000-A3K85_1_1103_6952_20934"); + read1563.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1563.setScores(scores); + ffastqReads.push_back(read1563); + FastqRead read1564; read1564.setName("M00967_44_000000000-A3K85_1_1103_23073_20978"); + read1564.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1564.setScores(scores); + ffastqReads.push_back(read1564); + FastqRead read1565; read1565.setName("M00967_44_000000000-A3K85_1_1103_16998_20990"); + read1565.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGGTGTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1565.setScores(scores); + ffastqReads.push_back(read1565); + FastqRead read1566; read1566.setName("M00967_44_000000000-A3K85_1_1103_22482_21000"); + read1566.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCCCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(27); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(27); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(13); read1566.setScores(scores); + ffastqReads.push_back(read1566); + FastqRead read1567; read1567.setName("M00967_44_000000000-A3K85_1_1103_21491_21026"); + read1567.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1567.setScores(scores); + ffastqReads.push_back(read1567); + FastqRead read1568; read1568.setName("M00967_44_000000000-A3K85_1_1103_14063_21055"); + read1568.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); read1568.setScores(scores); + ffastqReads.push_back(read1568); + FastqRead read1569; read1569.setName("M00967_44_000000000-A3K85_1_1103_6147_21060"); + read1569.setSeq("TACGTAGGGGGCAAGCGTTATCTGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1569.setScores(scores); + ffastqReads.push_back(read1569); + FastqRead read1570; read1570.setName("M00967_44_000000000-A3K85_1_1103_4848_21126"); + read1570.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1570.setScores(scores); + ffastqReads.push_back(read1570); + FastqRead read1571; read1571.setName("M00967_44_000000000-A3K85_1_1103_10532_21130"); + read1571.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1571.setScores(scores); + ffastqReads.push_back(read1571); + FastqRead read1572; read1572.setName("M00967_44_000000000-A3K85_1_1103_28149_21159"); + read1572.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); read1572.setScores(scores); + ffastqReads.push_back(read1572); + FastqRead read1573; read1573.setName("M00967_44_000000000-A3K85_1_1103_21357_21167"); + read1573.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1573.setScores(scores); + ffastqReads.push_back(read1573); + FastqRead read1574; read1574.setName("M00967_44_000000000-A3K85_1_1103_27060_21193"); + read1574.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1574.setScores(scores); + ffastqReads.push_back(read1574); + FastqRead read1575; read1575.setName("M00967_44_000000000-A3K85_1_1103_23468_21226"); + read1575.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1575.setScores(scores); + ffastqReads.push_back(read1575); + FastqRead read1576; read1576.setName("M00967_44_000000000-A3K85_1_1103_3992_21248"); + read1576.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGATGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1576.setScores(scores); + ffastqReads.push_back(read1576); + FastqRead read1577; read1577.setName("M00967_44_000000000-A3K85_1_1103_15857_21275"); + read1577.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1577.setScores(scores); + ffastqReads.push_back(read1577); + FastqRead read1578; read1578.setName("M00967_44_000000000-A3K85_1_1103_17036_21297"); + read1578.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCGATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTTGCTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); 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scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); read1578.setScores(scores); + ffastqReads.push_back(read1578); + FastqRead read1579; read1579.setName("M00967_44_000000000-A3K85_1_1103_9234_21321"); + read1579.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGATGCAAGCCAGATGTGAAAGCCCGCGGCTCAACTGCGGTAGTGCATTTGGAACTGTATGGCTGGAGTGCAGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACTGTAACTGACGTTGGGGCTCGGAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); read1579.setScores(scores); + ffastqReads.push_back(read1579); + FastqRead read1580; read1580.setName("M00967_44_000000000-A3K85_1_1103_13437_21410"); + read1580.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(18); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(28); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1580.setScores(scores); + ffastqReads.push_back(read1580); + FastqRead read1581; read1581.setName("M00967_44_000000000-A3K85_1_1103_3832_21484"); + read1581.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGATGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1581.setScores(scores); + ffastqReads.push_back(read1581); + FastqRead read1582; read1582.setName("M00967_44_000000000-A3K85_1_1103_23901_21531"); + read1582.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); read1582.setScores(scores); + ffastqReads.push_back(read1582); + FastqRead read1583; read1583.setName("M00967_44_000000000-A3K85_1_1103_19094_21552"); + read1583.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1583.setScores(scores); + ffastqReads.push_back(read1583); + FastqRead read1584; read1584.setName("M00967_44_000000000-A3K85_1_1103_12995_21576"); + read1584.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1584.setScores(scores); + ffastqReads.push_back(read1584); + FastqRead read1585; read1585.setName("M00967_44_000000000-A3K85_1_1103_20828_21584"); + read1585.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1585.setScores(scores); + ffastqReads.push_back(read1585); + FastqRead read1586; read1586.setName("M00967_44_000000000-A3K85_1_1103_7153_21626"); + read1586.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1586.setScores(scores); + ffastqReads.push_back(read1586); + FastqRead read1587; read1587.setName("M00967_44_000000000-A3K85_1_1103_8225_21627"); + read1587.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGGCGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(30); 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scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); read1587.setScores(scores); + ffastqReads.push_back(read1587); + FastqRead read1588; read1588.setName("M00967_44_000000000-A3K85_1_1103_19859_21678"); + read1588.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAGAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1588.setScores(scores); + ffastqReads.push_back(read1588); + FastqRead read1589; read1589.setName("M00967_44_000000000-A3K85_1_1103_20711_21784"); + read1589.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(17); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1589.setScores(scores); + ffastqReads.push_back(read1589); + FastqRead read1590; read1590.setName("M00967_44_000000000-A3K85_1_1103_24342_21805"); + read1590.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCCGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); read1590.setScores(scores); + ffastqReads.push_back(read1590); + FastqRead read1591; read1591.setName("M00967_44_000000000-A3K85_1_1103_7590_21831"); + read1591.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); read1591.setScores(scores); + ffastqReads.push_back(read1591); + FastqRead read1592; read1592.setName("M00967_44_000000000-A3K85_1_1103_22836_21832"); + read1592.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1592.setScores(scores); + ffastqReads.push_back(read1592); + FastqRead read1593; read1593.setName("M00967_44_000000000-A3K85_1_1103_21801_21915"); + read1593.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGCCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGAGGCTTCCTGGTCTGCAACTGACCCTGAGGCGCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); read1593.setScores(scores); + ffastqReads.push_back(read1593); + FastqRead read1594; read1594.setName("M00967_44_000000000-A3K85_1_1103_24936_21934"); + read1594.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1594.setScores(scores); + ffastqReads.push_back(read1594); + FastqRead read1595; read1595.setName("M00967_44_000000000-A3K85_1_1103_24915_21934"); + read1595.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1595.setScores(scores); + ffastqReads.push_back(read1595); + FastqRead read1596; read1596.setName("M00967_44_000000000-A3K85_1_1103_7785_21957"); + read1596.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTTGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1596.setScores(scores); + ffastqReads.push_back(read1596); + FastqRead read1597; read1597.setName("M00967_44_000000000-A3K85_1_1103_5446_21963"); + read1597.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1597.setScores(scores); + ffastqReads.push_back(read1597); + FastqRead read1598; read1598.setName("M00967_44_000000000-A3K85_1_1103_7986_21969"); + read1598.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1598.setScores(scores); + ffastqReads.push_back(read1598); + FastqRead read1599; read1599.setName("M00967_44_000000000-A3K85_1_1103_23096_22127"); + read1599.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1599.setScores(scores); + ffastqReads.push_back(read1599); + FastqRead read1600; read1600.setName("M00967_44_000000000-A3K85_1_1103_21559_22133"); + read1600.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGTACGGCAAGTCTGATGTGAAAGCCCAGGGCTCAACCCTGGTACTGCATTGGAAACTGCCGGACTAGAGTGTCGGAGGGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGATGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1600.setScores(scores); + ffastqReads.push_back(read1600); + FastqRead read1601; read1601.setName("M00967_44_000000000-A3K85_1_1103_9508_22198"); + read1601.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1601.setScores(scores); + ffastqReads.push_back(read1601); + FastqRead read1602; read1602.setName("M00967_44_000000000-A3K85_1_1103_7961_22268"); + read1602.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGAGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGCCACTGATGCTCGAAAGTGTGGGAATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(29); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(39); 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scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); read1602.setScores(scores); + ffastqReads.push_back(read1602); + FastqRead read1603; read1603.setName("M00967_44_000000000-A3K85_1_1103_16224_22376"); + read1603.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1603.setScores(scores); + ffastqReads.push_back(read1603); + FastqRead read1604; read1604.setName("M00967_44_000000000-A3K85_1_1103_26966_22397"); + read1604.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1604.setScores(scores); + ffastqReads.push_back(read1604); + FastqRead read1605; read1605.setName("M00967_44_000000000-A3K85_1_1103_13413_22405"); + read1605.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1605.setScores(scores); + ffastqReads.push_back(read1605); + FastqRead read1606; read1606.setName("M00967_44_000000000-A3K85_1_1103_13860_22631"); + read1606.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGATGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1606.setScores(scores); + ffastqReads.push_back(read1606); + FastqRead read1607; read1607.setName("M00967_44_000000000-A3K85_1_1103_21853_22673"); + read1607.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGGTTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1607.setScores(scores); + ffastqReads.push_back(read1607); + FastqRead read1608; read1608.setName("M00967_44_000000000-A3K85_1_1103_22311_22803"); + read1608.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1608.setScores(scores); + ffastqReads.push_back(read1608); + FastqRead read1609; read1609.setName("M00967_44_000000000-A3K85_1_1103_12551_22804"); + read1609.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1609.setScores(scores); + ffastqReads.push_back(read1609); + FastqRead read1610; read1610.setName("M00967_44_000000000-A3K85_1_1103_14070_22835"); + read1610.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1610.setScores(scores); + ffastqReads.push_back(read1610); + FastqRead read1611; read1611.setName("M00967_44_000000000-A3K85_1_1103_11192_22913"); + read1611.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1611.setScores(scores); + ffastqReads.push_back(read1611); + FastqRead read1612; read1612.setName("M00967_44_000000000-A3K85_1_1103_16956_23047"); + read1612.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCCAGACAAGTCAGAAGTGAAAACCCGCGGCTCAACTGCGGGAGTGCTTTTGAAACTGTTTGGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1612.setScores(scores); + ffastqReads.push_back(read1612); + FastqRead read1613; read1613.setName("M00967_44_000000000-A3K85_1_1103_14155_23265"); + read1613.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGAAAGCAAGTCAGATGTGAAAACCATGGGCTCAACCTGTGGCCTGCATTTGAAACTGTTTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(25); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1613.setScores(scores); + ffastqReads.push_back(read1613); + FastqRead read1614; read1614.setName("M00967_44_000000000-A3K85_1_1103_10006_23310"); + read1614.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1614.setScores(scores); + ffastqReads.push_back(read1614); + FastqRead read1615; read1615.setName("M00967_44_000000000-A3K85_1_1103_9742_23352"); + read1615.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGGAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); read1615.setScores(scores); + ffastqReads.push_back(read1615); + FastqRead read1616; read1616.setName("M00967_44_000000000-A3K85_1_1103_8399_23381"); + read1616.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGGGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1616.setScores(scores); + ffastqReads.push_back(read1616); + FastqRead read1617; read1617.setName("M00967_44_000000000-A3K85_1_1103_16306_23388"); + read1617.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); read1617.setScores(scores); + ffastqReads.push_back(read1617); + FastqRead read1618; read1618.setName("M00967_44_000000000-A3K85_1_1103_16808_23425"); + read1618.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1618.setScores(scores); + ffastqReads.push_back(read1618); + FastqRead read1619; read1619.setName("M00967_44_000000000-A3K85_1_1103_12949_23426"); + read1619.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1619.setScores(scores); + ffastqReads.push_back(read1619); + FastqRead read1620; read1620.setName("M00967_44_000000000-A3K85_1_1103_5666_23432"); + read1620.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(33); read1620.setScores(scores); + ffastqReads.push_back(read1620); + FastqRead read1621; read1621.setName("M00967_44_000000000-A3K85_1_1103_5685_23435"); + read1621.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATTCCGGCGCCCTACTGACGCTGAGGCACGAAAGCGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1621.setScores(scores); + ffastqReads.push_back(read1621); + FastqRead read1622; read1622.setName("M00967_44_000000000-A3K85_1_1103_22918_23456"); + read1622.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1622.setScores(scores); + ffastqReads.push_back(read1622); + FastqRead read1623; read1623.setName("M00967_44_000000000-A3K85_1_1103_19074_23490"); + read1623.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1623.setScores(scores); + ffastqReads.push_back(read1623); + FastqRead read1624; read1624.setName("M00967_44_000000000-A3K85_1_1103_12043_23499"); + read1624.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1624.setScores(scores); + ffastqReads.push_back(read1624); + FastqRead read1625; read1625.setName("M00967_44_000000000-A3K85_1_1103_15796_23573"); + read1625.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); 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scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1625.setScores(scores); + ffastqReads.push_back(read1625); + FastqRead read1626; read1626.setName("M00967_44_000000000-A3K85_1_1103_26642_23598"); + read1626.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACGGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(32); 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scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1626.setScores(scores); + ffastqReads.push_back(read1626); + FastqRead read1627; read1627.setName("M00967_44_000000000-A3K85_1_1103_18406_23813"); + read1627.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1627.setScores(scores); + ffastqReads.push_back(read1627); + FastqRead read1628; read1628.setName("M00967_44_000000000-A3K85_1_1103_17509_23825"); + read1628.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(13); read1628.setScores(scores); + ffastqReads.push_back(read1628); + FastqRead read1629; read1629.setName("M00967_44_000000000-A3K85_1_1103_14145_23830"); + read1629.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1629.setScores(scores); + ffastqReads.push_back(read1629); + FastqRead read1630; read1630.setName("M00967_44_000000000-A3K85_1_1103_15131_23866"); + read1630.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGAACGAAAGCGTGGGAATCGACCAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); read1630.setScores(scores); + ffastqReads.push_back(read1630); + FastqRead read1631; read1631.setName("M00967_44_000000000-A3K85_1_1103_25338_23909"); + read1631.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCGGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1631.setScores(scores); + ffastqReads.push_back(read1631); + FastqRead read1632; read1632.setName("M00967_44_000000000-A3K85_1_1103_13239_23936"); + read1632.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1632.setScores(scores); + ffastqReads.push_back(read1632); + FastqRead read1633; read1633.setName("M00967_44_000000000-A3K85_1_1103_18636_23965"); + read1633.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1633.setScores(scores); + ffastqReads.push_back(read1633); + FastqRead read1634; read1634.setName("M00967_44_000000000-A3K85_1_1103_9629_23985"); + read1634.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTTAAGTCAGCGGTCAAATGTAGGGGCTCAACCTCTGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(16); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(30); scores.push_back(19); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(12); scores.push_back(29); scores.push_back(36); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1634.setScores(scores); + ffastqReads.push_back(read1634); + FastqRead read1635; read1635.setName("M00967_44_000000000-A3K85_1_1103_24174_24078"); + read1635.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1635.setScores(scores); + ffastqReads.push_back(read1635); + FastqRead read1636; read1636.setName("M00967_44_000000000-A3K85_1_1103_24682_24140"); + read1636.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1636.setScores(scores); + ffastqReads.push_back(read1636); + FastqRead read1637; read1637.setName("M00967_44_000000000-A3K85_1_1103_23311_24194"); + read1637.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); read1637.setScores(scores); + ffastqReads.push_back(read1637); + FastqRead read1638; read1638.setName("M00967_44_000000000-A3K85_1_1103_17382_24279"); + read1638.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1638.setScores(scores); + ffastqReads.push_back(read1638); + FastqRead read1639; read1639.setName("M00967_44_000000000-A3K85_1_1103_18439_24461"); + read1639.setSeq("TACGGAGGATACGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); read1639.setScores(scores); + ffastqReads.push_back(read1639); + FastqRead read1640; read1640.setName("M00967_44_000000000-A3K85_1_1103_12485_24494"); + read1640.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1640.setScores(scores); + ffastqReads.push_back(read1640); + FastqRead read1641; read1641.setName("M00967_44_000000000-A3K85_1_1103_19273_24515"); + read1641.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1641.setScores(scores); + ffastqReads.push_back(read1641); + FastqRead read1642; read1642.setName("M00967_44_000000000-A3K85_1_1103_20806_24688"); + read1642.setSeq("TACGGAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGGACGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1642.setScores(scores); + ffastqReads.push_back(read1642); + FastqRead read1643; read1643.setName("M00967_44_000000000-A3K85_1_1103_14081_24798"); + read1643.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1643.setScores(scores); + ffastqReads.push_back(read1643); + FastqRead read1644; read1644.setName("M00967_44_000000000-A3K85_1_1103_23143_24859"); + read1644.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1644.setScores(scores); + ffastqReads.push_back(read1644); + FastqRead read1645; read1645.setName("M00967_44_000000000-A3K85_1_1103_19977_24864"); + read1645.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGGTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTGCTGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCCTACTGGACCGAAACTGACGCTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(27); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1645.setScores(scores); + ffastqReads.push_back(read1645); + FastqRead read1646; read1646.setName("M00967_44_000000000-A3K85_1_1103_7976_24891"); + read1646.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGTGTAGGCGGGAAGTCAAGTCAGCGGTGAAAACGAGGGGCTCAACCCCTACCCGCCATTTAAAATGGCGTTTTTGGGTGGCTGGGAAGTCAATGGAAAGCGTGGTGTAAGCGTGAAATGCCTAGATATCACGCAGAAACACCATTGCGAAGGCCGCATTCCGGCTCCCTAATGACGCTGAAGCACGAAAGCGGGGGGATGCAAACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(33); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(14); scores.push_back(29); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(15); scores.push_back(12); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(13); read1646.setScores(scores); + ffastqReads.push_back(read1646); + FastqRead read1647; read1647.setName("M00967_44_000000000-A3K85_1_1103_17926_24946"); + read1647.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGGAGCGAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(19); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(31); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(14); scores.push_back(31); scores.push_back(36); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(28); scores.push_back(28); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(15); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); read1647.setScores(scores); + ffastqReads.push_back(read1647); + FastqRead read1648; read1648.setName("M00967_44_000000000-A3K85_1_1103_17911_24960"); + read1648.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCTGCTCAACCGGGGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGGACTCCATGTGTAGCGGTGGCATGCGTAGATATATGGGAGAACACCAGTGGCGAAGGCGGCTCTCTGGGCTGCAACTGACGCTGAGGCTCTAAAGCTTGGGTAGCGAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(29); scores.push_back(29); scores.push_back(14); scores.push_back(16); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(33); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(29); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(29); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(38); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(29); read1648.setScores(scores); + ffastqReads.push_back(read1648); + FastqRead read1649; read1649.setName("M00967_44_000000000-A3K85_1_1103_20307_25105"); + read1649.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(37); read1649.setScores(scores); + ffastqReads.push_back(read1649); + FastqRead read1650; read1650.setName("M00967_44_000000000-A3K85_1_1103_25119_25225"); + read1650.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACAATGACTGACGTTGAGGCTCGAAAACGGTGGGGGCCAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(13); read1650.setScores(scores); + ffastqReads.push_back(read1650); + FastqRead read1651; read1651.setName("M00967_44_000000000-A3K85_1_1103_24271_25286"); + read1651.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTAATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATTACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1651.setScores(scores); + ffastqReads.push_back(read1651); + FastqRead read1652; read1652.setName("M00967_44_000000000-A3K85_1_1103_21592_25318"); + read1652.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1652.setScores(scores); + ffastqReads.push_back(read1652); + FastqRead read1653; read1653.setName("M00967_44_000000000-A3K85_1_1103_9716_25360"); + read1653.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1653.setScores(scores); + ffastqReads.push_back(read1653); + FastqRead read1654; read1654.setName("M00967_44_000000000-A3K85_1_1103_21499_25434"); + read1654.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1655.setScores(scores); + ffastqReads.push_back(read1655); + FastqRead read1656; read1656.setName("M00967_44_000000000-A3K85_1_1103_8275_25549"); + read1656.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1656.setScores(scores); + ffastqReads.push_back(read1656); + FastqRead read1657; read1657.setName("M00967_44_000000000-A3K85_1_1103_15433_25651"); + read1657.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCCAGACAAGTCAGAAGTGAAAACCCGCGGCTCAACTGCGGGAGTGCTTTTGAAACTGTTTGGCTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1657.setScores(scores); + ffastqReads.push_back(read1657); + FastqRead read1658; read1658.setName("M00967_44_000000000-A3K85_1_1103_17781_25709"); + read1658.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCCACGCAAGTCAGAAGTGAAAACCCGGGGCTCAACCCTGGGAGTGCTTTTGAAACTGTGCGGCTAGAGTGTCGGAGGGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGATGACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1658.setScores(scores); + ffastqReads.push_back(read1658); + FastqRead read1659; read1659.setName("M00967_44_000000000-A3K85_1_1103_18686_25710"); + read1659.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1659.setScores(scores); + ffastqReads.push_back(read1659); + FastqRead read1660; read1660.setName("M00967_44_000000000-A3K85_1_1103_14445_25720"); + read1660.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1660.setScores(scores); + ffastqReads.push_back(read1660); + FastqRead read1661; read1661.setName("M00967_44_000000000-A3K85_1_1103_19469_25768"); + read1661.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1661.setScores(scores); + ffastqReads.push_back(read1661); + FastqRead read1662; read1662.setName("M00967_44_000000000-A3K85_1_1103_24184_25771"); + read1662.setSeq("TACGGAGGATGCGAGCGTTATCCGGAATTATTGGGTGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1662.setScores(scores); + ffastqReads.push_back(read1662); + FastqRead read1663; read1663.setName("M00967_44_000000000-A3K85_1_1103_17720_25860"); + read1663.setSeq("TACGGAGGGTCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(34); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(27); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1663.setScores(scores); + ffastqReads.push_back(read1663); + FastqRead read1664; read1664.setName("M00967_44_000000000-A3K85_1_1103_10932_25944"); + read1664.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGACCAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(29); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); 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scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); read1664.setScores(scores); + ffastqReads.push_back(read1664); + FastqRead read1665; read1665.setName("M00967_44_000000000-A3K85_1_1103_22749_25990"); + read1665.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1665.setScores(scores); + ffastqReads.push_back(read1665); + FastqRead read1666; read1666.setName("M00967_44_000000000-A3K85_1_1103_22423_26014"); + read1666.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(13); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1666.setScores(scores); + ffastqReads.push_back(read1666); + FastqRead read1667; read1667.setName("M00967_44_000000000-A3K85_1_1103_10268_26078"); + read1667.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1667.setScores(scores); + ffastqReads.push_back(read1667); + FastqRead read1668; read1668.setName("M00967_44_000000000-A3K85_1_1103_19243_26081"); + read1668.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCAGATGTGAAAGGCCTCGGCTCAACCCGGGCATTGCGTCAGAACCTGTTGAATTTGAGTGGCGAAGAGGAGGGTGGAACCCCGTGTTTAGGGGGGGAATGCGTAGATATATGGAAAAACCCCAGTGGGGAAGGAGGATCCCGGGGCCGGAATTGACGCGGAGGCCCGAAAGCATGGGATGGGAAAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); 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scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); read1668.setScores(scores); + ffastqReads.push_back(read1668); + FastqRead read1669; read1669.setName("M00967_44_000000000-A3K85_1_1103_19861_26172"); + read1669.setSeq("TACGTAGGAGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(19); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); 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scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(31); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(27); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(18); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); 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scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); read1669.setScores(scores); + ffastqReads.push_back(read1669); + FastqRead read1670; read1670.setName("M00967_44_000000000-A3K85_1_1103_22708_26190"); + read1670.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGAACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(25); read1670.setScores(scores); + ffastqReads.push_back(read1670); + FastqRead read1671; read1671.setName("M00967_44_000000000-A3K85_1_1103_19630_26195"); + read1671.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1671.setScores(scores); + ffastqReads.push_back(read1671); + FastqRead read1672; read1672.setName("M00967_44_000000000-A3K85_1_1103_13069_26233"); + read1672.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1672.setScores(scores); + ffastqReads.push_back(read1672); + FastqRead read1673; read1673.setName("M00967_44_000000000-A3K85_1_1103_17352_26365"); + read1673.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1673.setScores(scores); + ffastqReads.push_back(read1673); + FastqRead read1674; read1674.setName("M00967_44_000000000-A3K85_1_1103_14958_26517"); + read1674.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1674.setScores(scores); + ffastqReads.push_back(read1674); + FastqRead read1675; read1675.setName("M00967_44_000000000-A3K85_1_1103_16490_26749"); + read1675.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTTTTGAGTACAGTAGAGGTGGGCGGAATTCGGGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGATCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(19); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(30); scores.push_back(37); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(18); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(19); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(17); scores.push_back(14); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(18); scores.push_back(30); scores.push_back(14); scores.push_back(27); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(31); scores.push_back(17); scores.push_back(31); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(27); scores.push_back(27); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(30); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1675.setScores(scores); + ffastqReads.push_back(read1675); + FastqRead read1676; read1676.setName("M00967_44_000000000-A3K85_1_1103_8865_26780"); + read1676.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1676.setScores(scores); + ffastqReads.push_back(read1676); + FastqRead read1677; read1677.setName("M00967_44_000000000-A3K85_1_1103_19238_26808"); + read1677.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTGAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); 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scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(12); read1677.setScores(scores); + ffastqReads.push_back(read1677); + FastqRead read1678; read1678.setName("M00967_44_000000000-A3K85_1_1103_14032_27039"); + read1678.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1678.setScores(scores); + ffastqReads.push_back(read1678); + FastqRead read1679; read1679.setName("M00967_44_000000000-A3K85_1_1103_10226_27039"); + read1679.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(37); read1679.setScores(scores); + ffastqReads.push_back(read1679); + FastqRead read1680; read1680.setName("M00967_44_000000000-A3K85_1_1103_11742_27051"); + read1680.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); read1680.setScores(scores); + ffastqReads.push_back(read1680); + FastqRead read1681; read1681.setName("M00967_44_000000000-A3K85_1_1103_10189_27072"); + read1681.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGCAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); 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scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1681.setScores(scores); + ffastqReads.push_back(read1681); + FastqRead read1682; read1682.setName("M00967_44_000000000-A3K85_1_1103_20573_27077"); + read1682.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(29); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1682.setScores(scores); + ffastqReads.push_back(read1682); + FastqRead read1683; read1683.setName("M00967_44_000000000-A3K85_1_1103_22492_27088"); + read1683.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1683.setScores(scores); + ffastqReads.push_back(read1683); + FastqRead read1684; read1684.setName("M00967_44_000000000-A3K85_1_1103_22251_27182"); + read1684.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCCTAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); 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scores.push_back(33); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(26); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); read1684.setScores(scores); + ffastqReads.push_back(read1684); + FastqRead read1685; read1685.setName("M00967_44_000000000-A3K85_1_1103_19703_27596"); + read1685.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1685.setScores(scores); + ffastqReads.push_back(read1685); + FastqRead read1686; read1686.setName("M00967_44_000000000-A3K85_1_1103_19779_27597"); + read1686.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1686.setScores(scores); + ffastqReads.push_back(read1686); + FastqRead read1687; read1687.setName("M00967_44_000000000-A3K85_1_1103_19779_27676"); + read1687.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGAACAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTCGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1687.setScores(scores); + ffastqReads.push_back(read1687); + FastqRead read1688; read1688.setName("M00967_44_000000000-A3K85_1_1103_17354_27891"); + read1688.setSeq("TACGTAGGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCGATGCAAGTCAGAAGTGAAAGCCCGGGGCTCAACTCCGGGACTGCTTTTGAAACTGTGTTGCTAGATTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAAATGACGCTGAGGCTCGAAAGCGTGGGGAGCAAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(28); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1688.setScores(scores); + ffastqReads.push_back(read1688); + FastqRead read1689; read1689.setName("M00967_44_000000000-A3K85_1_1103_11120_28150"); + read1689.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGACCAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(17); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(25); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); read1689.setScores(scores); + ffastqReads.push_back(read1689); + FastqRead read1690; read1690.setName("M00967_44_000000000-A3K85_1_1103_19515_28163"); + read1690.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGTGTAGGCGGGGACGCAAGTCAGATGTGAAAACCACGGGCTCAACCTGTGGCCTGCATTTGAAACTGTGTTTCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGCTGAGGCGCGAAAGCGTGGGGATCGAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(29); scores.push_back(36); 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scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); read1690.setScores(scores); + ffastqReads.push_back(read1690); + FastqRead read1691; read1691.setName("M00967_44_000000000-A3K85_1_1103_17253_28352"); + read1691.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTACTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); read1691.setScores(scores); + ffastqReads.push_back(read1691); + FastqRead read1692; read1692.setName("M00967_44_000000000-A3K85_1_1103_14802_28451"); + read1692.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1692.setScores(scores); + ffastqReads.push_back(read1692); + FastqRead read1693; read1693.setName("M00967_44_000000000-A3K85_1_1103_17650_28535"); + read1693.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); read1693.setScores(scores); + ffastqReads.push_back(read1693); + FastqRead read1694; read1694.setName("M00967_44_000000000-A3K85_1_1103_17421_28782"); + read1694.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1694.setScores(scores); + ffastqReads.push_back(read1694); + FastqRead read1695; read1695.setName("M00967_44_000000000-A3K85_1_1103_13350_28920"); + read1695.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGGGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(24); read1695.setScores(scores); + ffastqReads.push_back(read1695); + FastqRead read1696; read1696.setName("M00967_44_000000000-A3K85_1_1103_16027_28987"); + read1696.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(31); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1697.setScores(scores); + ffastqReads.push_back(read1697); + FastqRead read1698; read1698.setName("M00967_44_000000000-A3K85_1_1104_18323_2001"); + read1698.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1698.setScores(scores); + ffastqReads.push_back(read1698); + FastqRead read1699; read1699.setName("M00967_44_000000000-A3K85_1_1104_11450_2198"); + read1699.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1699.setScores(scores); + ffastqReads.push_back(read1699); + FastqRead read1700; read1700.setName("M00967_44_000000000-A3K85_1_1104_18460_2322"); + read1700.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1700.setScores(scores); + ffastqReads.push_back(read1700); + FastqRead read1701; read1701.setName("M00967_44_000000000-A3K85_1_1104_20770_2332"); + read1701.setSeq("NACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCNTGTAGGCGGGAATGCAAGTCAGATGTGAAAANNNNNNGNTNNNNNNNNNNNNNGNATTTGAAACTGTATTTNTTGAGTGCTNGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCAGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(2); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1701.setScores(scores); + ffastqReads.push_back(read1701); + FastqRead read1702; read1702.setName("M00967_44_000000000-A3K85_1_1104_17412_2463"); + read1702.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1702.setScores(scores); + ffastqReads.push_back(read1702); + FastqRead read1703; read1703.setName("M00967_44_000000000-A3K85_1_1104_11758_2531"); + read1703.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); 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scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1703.setScores(scores); + ffastqReads.push_back(read1703); + FastqRead read1704; read1704.setName("M00967_44_000000000-A3K85_1_1104_11319_2540"); + read1704.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1704.setScores(scores); + ffastqReads.push_back(read1704); + FastqRead read1705; read1705.setName("M00967_44_000000000-A3K85_1_1104_20469_2587"); + read1705.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGAAGCGGTGAAATGAGTGGATATTAGGAAGACCACCAGTGGCGAGGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(16); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(28); scores.push_back(37); scores.push_back(16); scores.push_back(28); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(37); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1705.setScores(scores); + ffastqReads.push_back(read1705); + FastqRead read1706; read1706.setName("M00967_44_000000000-A3K85_1_1104_11511_2665"); + read1706.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); read1706.setScores(scores); + ffastqReads.push_back(read1706); + FastqRead read1707; read1707.setName("M00967_44_000000000-A3K85_1_1104_21727_2815"); + read1707.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGGGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(13); read1707.setScores(scores); + ffastqReads.push_back(read1707); + FastqRead read1708; read1708.setName("M00967_44_000000000-A3K85_1_1104_17962_2821"); + read1708.setSeq("TACGGAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGCAGCGCAAGTCTGATGTGAAAGCCCGGGGCCCAACCGCGGGACTGCATTGGAAACTGCGCAGCTGGAGTGCCGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGCAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(29); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1708.setScores(scores); + ffastqReads.push_back(read1708); + FastqRead read1709; read1709.setName("M00967_44_000000000-A3K85_1_1104_9888_2825"); + read1709.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGGGTAGGGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACTGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); 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scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); read1709.setScores(scores); + ffastqReads.push_back(read1709); + FastqRead read1710; read1710.setName("M00967_44_000000000-A3K85_1_1104_10305_3125"); + read1710.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1710.setScores(scores); + ffastqReads.push_back(read1710); + FastqRead read1711; read1711.setName("M00967_44_000000000-A3K85_1_1104_21864_3280"); + read1711.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGGGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(17); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(17); scores.push_back(35); scores.push_back(18); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(29); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(14); scores.push_back(28); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); read1711.setScores(scores); + ffastqReads.push_back(read1711); + FastqRead read1712; read1712.setName("M00967_44_000000000-A3K85_1_1104_20873_3303"); + read1712.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1712.setScores(scores); + ffastqReads.push_back(read1712); + FastqRead read1713; read1713.setName("M00967_44_000000000-A3K85_1_1104_13963_3327"); + read1713.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(16); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read1713.setScores(scores); + ffastqReads.push_back(read1713); + FastqRead read1714; read1714.setName("M00967_44_000000000-A3K85_1_1104_14928_3328"); + read1714.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); read1714.setScores(scores); + ffastqReads.push_back(read1714); + FastqRead read1715; read1715.setName("M00967_44_000000000-A3K85_1_1104_21774_3379"); + read1715.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); read1715.setScores(scores); + ffastqReads.push_back(read1715); + FastqRead read1716; read1716.setName("M00967_44_000000000-A3K85_1_1104_17896_3594"); + read1716.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1716.setScores(scores); + ffastqReads.push_back(read1716); + FastqRead read1717; read1717.setName("M00967_44_000000000-A3K85_1_1104_10966_3647"); + read1717.setSeq("TACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGGCGTAAAGGGAGTATAGGCGGCTTAATAAGTTAGATGTGAAATCCCGCGGCTCAACCGCGGAACTGCATCTAAAACTGTTGAGCTGGAGTGCAGGAGAGGTGAGTGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGAGGCGAAGGCGACTCACTGGACTGTAACTGACGCCGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); read1717.setScores(scores); + ffastqReads.push_back(read1717); + FastqRead read1718; read1718.setName("M00967_44_000000000-A3K85_1_1104_20616_3695"); + read1718.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1718.setScores(scores); + ffastqReads.push_back(read1718); + FastqRead read1719; read1719.setName("M00967_44_000000000-A3K85_1_1104_13181_3833"); + read1719.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1719.setScores(scores); + ffastqReads.push_back(read1719); + FastqRead read1720; read1720.setName("M00967_44_000000000-A3K85_1_1104_17617_3838"); + read1720.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1720.setScores(scores); + ffastqReads.push_back(read1720); + FastqRead read1721; read1721.setName("M00967_44_000000000-A3K85_1_1104_10740_3995"); + read1721.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1721.setScores(scores); + ffastqReads.push_back(read1721); + FastqRead read1722; read1722.setName("M00967_44_000000000-A3K85_1_1104_23070_4007"); + read1722.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1722.setScores(scores); + ffastqReads.push_back(read1722); + FastqRead read1723; read1723.setName("M00967_44_000000000-A3K85_1_1104_13408_4029"); + read1723.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1723.setScores(scores); + ffastqReads.push_back(read1723); + FastqRead read1724; read1724.setName("M00967_44_000000000-A3K85_1_1104_11059_4047"); + read1724.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1724.setScores(scores); + ffastqReads.push_back(read1724); + FastqRead read1725; read1725.setName("M00967_44_000000000-A3K85_1_1104_19788_4114"); + read1725.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); 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scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1725.setScores(scores); + ffastqReads.push_back(read1725); + FastqRead read1726; read1726.setName("M00967_44_000000000-A3K85_1_1104_12750_4150"); + read1726.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1726.setScores(scores); + ffastqReads.push_back(read1726); + FastqRead read1727; read1727.setName("M00967_44_000000000-A3K85_1_1104_17052_4215"); + read1727.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGAAACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); read1727.setScores(scores); + ffastqReads.push_back(read1727); + FastqRead read1728; read1728.setName("M00967_44_000000000-A3K85_1_1104_19407_4216"); + read1728.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1728.setScores(scores); + ffastqReads.push_back(read1728); + FastqRead read1729; read1729.setName("M00967_44_000000000-A3K85_1_1104_16912_4229"); + read1729.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1729.setScores(scores); + ffastqReads.push_back(read1729); + FastqRead read1730; read1730.setName("M00967_44_000000000-A3K85_1_1104_16822_4236"); + read1730.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1730.setScores(scores); + ffastqReads.push_back(read1730); + FastqRead read1731; read1731.setName("M00967_44_000000000-A3K85_1_1104_18013_4286"); + read1731.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(37); read1731.setScores(scores); + ffastqReads.push_back(read1731); + FastqRead read1732; read1732.setName("M00967_44_000000000-A3K85_1_1104_20110_4317"); + read1732.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(34); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); read1732.setScores(scores); + ffastqReads.push_back(read1732); + FastqRead read1733; read1733.setName("M00967_44_000000000-A3K85_1_1104_17235_4407"); + read1733.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1733.setScores(scores); + ffastqReads.push_back(read1733); + FastqRead read1734; read1734.setName("M00967_44_000000000-A3K85_1_1104_19888_4463"); + read1734.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1734.setScores(scores); + ffastqReads.push_back(read1734); + FastqRead read1735; read1735.setName("M00967_44_000000000-A3K85_1_1104_23207_4515"); + read1735.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1735.setScores(scores); + ffastqReads.push_back(read1735); + FastqRead read1736; read1736.setName("M00967_44_000000000-A3K85_1_1104_20134_4520"); + read1736.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1736.setScores(scores); + ffastqReads.push_back(read1736); + FastqRead read1737; read1737.setName("M00967_44_000000000-A3K85_1_1104_9818_4548"); + read1737.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1737.setScores(scores); + ffastqReads.push_back(read1737); + FastqRead read1738; read1738.setName("M00967_44_000000000-A3K85_1_1104_14142_4567"); + read1738.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(35); 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scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1738.setScores(scores); + ffastqReads.push_back(read1738); + FastqRead read1739; read1739.setName("M00967_44_000000000-A3K85_1_1104_9633_4798"); + read1739.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(17); scores.push_back(36); scores.push_back(37); 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scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1739.setScores(scores); + ffastqReads.push_back(read1739); + FastqRead read1740; read1740.setName("M00967_44_000000000-A3K85_1_1104_14440_4840"); + read1740.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(37); read1740.setScores(scores); + ffastqReads.push_back(read1740); + FastqRead read1741; read1741.setName("M00967_44_000000000-A3K85_1_1104_16860_4871"); + read1741.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1741.setScores(scores); + ffastqReads.push_back(read1741); + FastqRead read1742; read1742.setName("M00967_44_000000000-A3K85_1_1104_13732_4872"); + read1742.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1742.setScores(scores); + ffastqReads.push_back(read1742); + FastqRead read1743; read1743.setName("M00967_44_000000000-A3K85_1_1104_16625_4941"); + read1743.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1743.setScores(scores); + ffastqReads.push_back(read1743); + FastqRead read1744; read1744.setName("M00967_44_000000000-A3K85_1_1104_22056_5001"); + read1744.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGGGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAACAA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1744.setScores(scores); + ffastqReads.push_back(read1744); + FastqRead read1745; read1745.setName("M00967_44_000000000-A3K85_1_1104_16404_5025"); + read1745.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1746.setScores(scores); + ffastqReads.push_back(read1746); + FastqRead read1747; read1747.setName("M00967_44_000000000-A3K85_1_1104_13165_5151"); + read1747.setSeq("TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGAGTAGGTGGCAGAGCAAGTCCGAAGTGAAAACCCAAAGCTCAACTATGGGAATGCTTTAGAAACTGCTCAGCTAGAGTGCAGGAGAGGCAAGTGGAATTCTTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read1747.setScores(scores); + ffastqReads.push_back(read1747); + FastqRead read1748; read1748.setName("M00967_44_000000000-A3K85_1_1104_12801_5175"); + read1748.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1748.setScores(scores); + ffastqReads.push_back(read1748); + FastqRead read1749; read1749.setName("M00967_44_000000000-A3K85_1_1104_15449_5263"); + read1749.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTCACTGGGTGTAAAGGGAGCGTAGACGGCCATGCAAGCCAGGGGTGAAAGCCCGGGGCCCAACCCCGGGACTGCCCTTGGAACTGCATGGCTGGAGTGCGGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCCGGACCGCGACTGACGTTGAGGCTCGAAAGCGGGGGGGGCGAACA"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(12); read1749.setScores(scores); + ffastqReads.push_back(read1749); + FastqRead read1750; read1750.setName("M00967_44_000000000-A3K85_1_1104_8785_5272"); + read1750.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGCCGATCAAGTCAGCGGTAAAATTGCGAGGCTCAACCCCTTCGAGCCGTTGAAACTGGCTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1750.setScores(scores); + ffastqReads.push_back(read1750); + FastqRead read1751; read1751.setName("M00967_44_000000000-A3K85_1_1104_18453_5285"); + read1751.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1751.setScores(scores); + ffastqReads.push_back(read1751); + FastqRead read1752; read1752.setName("M00967_44_000000000-A3K85_1_1104_7569_5336"); + read1752.setSeq("TACGGAGGATGCGAGCGGTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); read1752.setScores(scores); + ffastqReads.push_back(read1752); + FastqRead read1753; read1753.setName("M00967_44_000000000-A3K85_1_1104_7761_5367"); + read1753.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1753.setScores(scores); + ffastqReads.push_back(read1753); + FastqRead read1754; read1754.setName("M00967_44_000000000-A3K85_1_1104_25011_5390"); + read1754.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(26); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(28); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); read1754.setScores(scores); + ffastqReads.push_back(read1754); + FastqRead read1755; read1755.setName("M00967_44_000000000-A3K85_1_1104_13300_5408"); + read1755.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1755.setScores(scores); + ffastqReads.push_back(read1755); + FastqRead read1756; read1756.setName("M00967_44_000000000-A3K85_1_1104_13880_5445"); + read1756.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1756.setScores(scores); + ffastqReads.push_back(read1756); + FastqRead read1757; read1757.setName("M00967_44_000000000-A3K85_1_1104_18796_5484"); + read1757.setSeq("TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGTGTAAAGGGCGTGTAGGCGGGAATGCAAGTCAGATGTGAAAACTATGGGCTCAACCCATAGCCTGCATTTGAAACTGTATTTCTTGAGTGCTGGAGAGGCAATCGGAATTCCGTGTGTAGCGGTGAAATGCGTAGATATACGGAGGAACACCGGTGGCGAAGGCGGATTGCTGGACAGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1757.setScores(scores); + ffastqReads.push_back(read1757); + FastqRead read1758; read1758.setName("M00967_44_000000000-A3K85_1_1104_22050_5493"); + read1758.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1758.setScores(scores); + ffastqReads.push_back(read1758); + FastqRead read1759; read1759.setName("M00967_44_000000000-A3K85_1_1104_23362_5544"); + read1759.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); read1759.setScores(scores); + ffastqReads.push_back(read1759); + FastqRead read1760; read1760.setName("M00967_44_000000000-A3K85_1_1104_19603_5551"); + read1760.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1760.setScores(scores); + ffastqReads.push_back(read1760); + FastqRead read1761; read1761.setName("M00967_44_000000000-A3K85_1_1104_19050_5551"); + read1761.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1761.setScores(scores); + ffastqReads.push_back(read1761); + FastqRead read1762; read1762.setName("M00967_44_000000000-A3K85_1_1104_19631_5555"); + read1762.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1762.setScores(scores); + ffastqReads.push_back(read1762); + FastqRead read1763; read1763.setName("M00967_44_000000000-A3K85_1_1104_23172_5566"); + read1763.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1763.setScores(scores); + ffastqReads.push_back(read1763); + FastqRead read1764; read1764.setName("M00967_44_000000000-A3K85_1_1104_5887_5646"); + read1764.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1764.setScores(scores); + ffastqReads.push_back(read1764); + FastqRead read1765; read1765.setName("M00967_44_000000000-A3K85_1_1104_8474_5715"); + read1765.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGATTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1765.setScores(scores); + ffastqReads.push_back(read1765); + FastqRead read1766; read1766.setName("M00967_44_000000000-A3K85_1_1104_8460_5727"); + read1766.setSeq("TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTAGGCGGACTTTTAAGTGAGATGTGAAATACTCGGGCTCAACTTGAGTGCTGCATTTCAAACTGGAAGTCTAGAGTGCAGGAGAGGAGAATGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAGATTAGGAAGAACACCAGTGGCGAAGGCGATTCTCTGGACTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(35); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1766.setScores(scores); + ffastqReads.push_back(read1766); + FastqRead read1767; read1767.setName("M00967_44_000000000-A3K85_1_1104_21615_5772"); + read1767.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1767.setScores(scores); + ffastqReads.push_back(read1767); + FastqRead read1768; read1768.setName("M00967_44_000000000-A3K85_1_1104_12473_5784"); + read1768.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(17); scores.push_back(35); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(28); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1768.setScores(scores); + ffastqReads.push_back(read1768); + FastqRead read1769; read1769.setName("M00967_44_000000000-A3K85_1_1104_17552_5825"); + read1769.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1769.setScores(scores); + ffastqReads.push_back(read1769); + FastqRead read1770; read1770.setName("M00967_44_000000000-A3K85_1_1104_5835_5830"); + read1770.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGCAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(36); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(27); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(27); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(28); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); read1770.setScores(scores); + ffastqReads.push_back(read1770); + FastqRead read1771; read1771.setName("M00967_44_000000000-A3K85_1_1104_13105_5862"); + read1771.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(37); read1771.setScores(scores); + ffastqReads.push_back(read1771); + FastqRead read1772; read1772.setName("M00967_44_000000000-A3K85_1_1104_7496_5871"); + read1772.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1772.setScores(scores); + ffastqReads.push_back(read1772); + FastqRead read1773; read1773.setName("M00967_44_000000000-A3K85_1_1104_24650_5875"); + read1773.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1773.setScores(scores); + ffastqReads.push_back(read1773); + FastqRead read1774; read1774.setName("M00967_44_000000000-A3K85_1_1104_20461_5935"); + read1774.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1774.setScores(scores); + ffastqReads.push_back(read1774); + FastqRead read1775; read1775.setName("M00967_44_000000000-A3K85_1_1104_19460_5964"); + read1775.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1775.setScores(scores); + ffastqReads.push_back(read1775); + FastqRead read1776; read1776.setName("M00967_44_000000000-A3K85_1_1104_11942_5969"); + read1776.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1776.setScores(scores); + ffastqReads.push_back(read1776); + FastqRead read1777; read1777.setName("M00967_44_000000000-A3K85_1_1104_20936_6017"); + read1777.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1777.setScores(scores); + ffastqReads.push_back(read1777); + FastqRead read1778; read1778.setName("M00967_44_000000000-A3K85_1_1104_14768_6118"); + read1778.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(33); read1778.setScores(scores); + ffastqReads.push_back(read1778); + FastqRead read1779; read1779.setName("M00967_44_000000000-A3K85_1_1104_22040_6241"); + read1779.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1779.setScores(scores); + ffastqReads.push_back(read1779); + FastqRead read1780; read1780.setName("M00967_44_000000000-A3K85_1_1104_6625_6269"); + read1780.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(25); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(37); read1780.setScores(scores); + ffastqReads.push_back(read1780); + FastqRead read1781; read1781.setName("M00967_44_000000000-A3K85_1_1104_6964_6301"); + read1781.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCCAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTTCCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); read1781.setScores(scores); + ffastqReads.push_back(read1781); + FastqRead read1782; read1782.setName("M00967_44_000000000-A3K85_1_1104_20931_6358"); + read1782.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1782.setScores(scores); + ffastqReads.push_back(read1782); + FastqRead read1783; read1783.setName("M00967_44_000000000-A3K85_1_1104_14031_6413"); + read1783.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1783.setScores(scores); + ffastqReads.push_back(read1783); + FastqRead read1784; read1784.setName("M00967_44_000000000-A3K85_1_1104_7635_6436"); + read1784.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1784.setScores(scores); + ffastqReads.push_back(read1784); + FastqRead read1785; read1785.setName("M00967_44_000000000-A3K85_1_1104_9223_6574"); + read1785.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); read1785.setScores(scores); + ffastqReads.push_back(read1785); + FastqRead read1786; read1786.setName("M00967_44_000000000-A3K85_1_1104_9813_6625"); + read1786.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCGACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1786.setScores(scores); + ffastqReads.push_back(read1786); + FastqRead read1787; read1787.setName("M00967_44_000000000-A3K85_1_1104_15015_6635"); + read1787.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1788.setScores(scores); + ffastqReads.push_back(read1788); + FastqRead read1789; read1789.setName("M00967_44_000000000-A3K85_1_1104_8198_6678"); + read1789.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1789.setScores(scores); + ffastqReads.push_back(read1789); + FastqRead read1790; read1790.setName("M00967_44_000000000-A3K85_1_1104_24980_6786"); + read1790.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); read1790.setScores(scores); + ffastqReads.push_back(read1790); + FastqRead read1791; read1791.setName("M00967_44_000000000-A3K85_1_1104_5326_6814"); + read1791.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); read1791.setScores(scores); + ffastqReads.push_back(read1791); + FastqRead read1792; read1792.setName("M00967_44_000000000-A3K85_1_1104_24258_7230"); + read1792.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1792.setScores(scores); + ffastqReads.push_back(read1792); + FastqRead read1793; read1793.setName("M00967_44_000000000-A3K85_1_1104_18168_7405"); + read1793.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1793.setScores(scores); + ffastqReads.push_back(read1793); + FastqRead read1794; read1794.setName("M00967_44_000000000-A3K85_1_1104_19352_7587"); + read1794.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1794.setScores(scores); + ffastqReads.push_back(read1794); + FastqRead read1795; read1795.setName("M00967_44_000000000-A3K85_1_1104_11279_7599"); + read1795.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1795.setScores(scores); + ffastqReads.push_back(read1795); + FastqRead read1796; read1796.setName("M00967_44_000000000-A3K85_1_1104_14629_7712"); + read1796.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1796.setScores(scores); + ffastqReads.push_back(read1796); + FastqRead read1797; read1797.setName("M00967_44_000000000-A3K85_1_1104_20620_7769"); + read1797.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGAAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1797.setScores(scores); + ffastqReads.push_back(read1797); + FastqRead read1798; read1798.setName("M00967_44_000000000-A3K85_1_1104_11677_7778"); + read1798.setSeq("TACGGAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1798.setScores(scores); + ffastqReads.push_back(read1798); + FastqRead read1799; read1799.setName("M00967_44_000000000-A3K85_1_1104_20607_7782"); + read1799.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGAAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); read1799.setScores(scores); + ffastqReads.push_back(read1799); + FastqRead read1800; read1800.setName("M00967_44_000000000-A3K85_1_1104_23115_7826"); + read1800.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1801.setScores(scores); + ffastqReads.push_back(read1801); + FastqRead read1802; read1802.setName("M00967_44_000000000-A3K85_1_1104_26297_8002"); + read1802.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1802.setScores(scores); + ffastqReads.push_back(read1802); + FastqRead read1803; read1803.setName("M00967_44_000000000-A3K85_1_1104_25870_8024"); + read1803.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1803.setScores(scores); + ffastqReads.push_back(read1803); + FastqRead read1804; read1804.setName("M00967_44_000000000-A3K85_1_1104_8011_8037"); + read1804.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1804.setScores(scores); + ffastqReads.push_back(read1804); + FastqRead read1805; read1805.setName("M00967_44_000000000-A3K85_1_1104_16328_8069"); + read1805.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCCAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(28); scores.push_back(37); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1805.setScores(scores); + ffastqReads.push_back(read1805); + FastqRead read1806; read1806.setName("M00967_44_000000000-A3K85_1_1104_9404_8096"); + read1806.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1806.setScores(scores); + ffastqReads.push_back(read1806); + FastqRead read1807; read1807.setName("M00967_44_000000000-A3K85_1_1104_25127_8223"); + read1807.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1807.setScores(scores); + ffastqReads.push_back(read1807); + FastqRead read1808; read1808.setName("M00967_44_000000000-A3K85_1_1104_19167_8271"); + read1808.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1808.setScores(scores); + ffastqReads.push_back(read1808); + FastqRead read1809; read1809.setName("M00967_44_000000000-A3K85_1_1104_4922_8343"); + read1809.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1809.setScores(scores); + ffastqReads.push_back(read1809); + FastqRead read1810; read1810.setName("M00967_44_000000000-A3K85_1_1104_11127_8346"); + read1810.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1810.setScores(scores); + ffastqReads.push_back(read1810); + FastqRead read1811; read1811.setName("M00967_44_000000000-A3K85_1_1104_19431_8363"); + read1811.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1811.setScores(scores); + ffastqReads.push_back(read1811); + FastqRead read1812; read1812.setName("M00967_44_000000000-A3K85_1_1104_13546_8394"); + read1812.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1812.setScores(scores); + ffastqReads.push_back(read1812); + FastqRead read1813; read1813.setName("M00967_44_000000000-A3K85_1_1104_19883_8434"); + read1813.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGCGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(13); read1813.setScores(scores); + ffastqReads.push_back(read1813); + FastqRead read1814; read1814.setName("M00967_44_000000000-A3K85_1_1104_8775_8486"); + read1814.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGTGAGGCGCGAAAGCGTGGGGGGCCAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); 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scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(13); read1814.setScores(scores); + ffastqReads.push_back(read1814); + FastqRead read1815; read1815.setName("M00967_44_000000000-A3K85_1_1104_6827_8493"); + read1815.setSeq("TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGCGGCCTGCCAAGTCTGATGTGAAATACCGGGGCTCAACCCCGGGGCTGCATTGGAAACTGGCAGGCTGGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGCTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); read1815.setScores(scores); + ffastqReads.push_back(read1815); + FastqRead read1816; read1816.setName("M00967_44_000000000-A3K85_1_1104_14722_8494"); + read1816.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGTGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1816.setScores(scores); + ffastqReads.push_back(read1816); + FastqRead read1817; read1817.setName("M00967_44_000000000-A3K85_1_1104_26435_8512"); + read1817.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1817.setScores(scores); + ffastqReads.push_back(read1817); + FastqRead read1818; read1818.setName("M00967_44_000000000-A3K85_1_1104_25502_8521"); + read1818.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGCGCAAGTCTGAAGTGAAAGCCCGGGGCTCAACCCCGGGACTGCTTTGGAAACTGTGTAGCTAGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1818.setScores(scores); + ffastqReads.push_back(read1818); + FastqRead read1819; read1819.setName("M00967_44_000000000-A3K85_1_1104_12540_8523"); + read1819.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1819.setScores(scores); + ffastqReads.push_back(read1819); + FastqRead read1820; read1820.setName("M00967_44_000000000-A3K85_1_1104_13433_8536"); + read1820.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); read1820.setScores(scores); + ffastqReads.push_back(read1820); + FastqRead read1821; read1821.setName("M00967_44_000000000-A3K85_1_1104_22022_8575"); + read1821.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1821.setScores(scores); + ffastqReads.push_back(read1821); + FastqRead read1822; read1822.setName("M00967_44_000000000-A3K85_1_1104_6914_8620"); + read1822.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAATGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(33); read1822.setScores(scores); + ffastqReads.push_back(read1822); + FastqRead read1823; read1823.setName("M00967_44_000000000-A3K85_1_1104_16661_8628"); + read1823.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1823.setScores(scores); + ffastqReads.push_back(read1823); + FastqRead read1824; read1824.setName("M00967_44_000000000-A3K85_1_1104_11076_8638"); + read1824.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1824.setScores(scores); + ffastqReads.push_back(read1824); + FastqRead read1825; read1825.setName("M00967_44_000000000-A3K85_1_1104_10754_8858"); + read1825.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGGGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1825.setScores(scores); + ffastqReads.push_back(read1825); + FastqRead read1826; read1826.setName("M00967_44_000000000-A3K85_1_1104_11205_8888"); + read1826.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACCGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTTAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1826.setScores(scores); + ffastqReads.push_back(read1826); + FastqRead read1827; read1827.setName("M00967_44_000000000-A3K85_1_1104_11022_8932"); + read1827.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGCGGCAAGTCTGAAGTGAAAGGCAGGGGCTTAACCCCTGAACTGCTTTGGAAACTGCCATGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1827.setScores(scores); + ffastqReads.push_back(read1827); + FastqRead read1828; read1828.setName("M00967_44_000000000-A3K85_1_1104_25679_8933"); + read1828.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1828.setScores(scores); + ffastqReads.push_back(read1828); + FastqRead read1829; read1829.setName("M00967_44_000000000-A3K85_1_1104_21726_9001"); + read1829.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGTAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1829.setScores(scores); + ffastqReads.push_back(read1829); + FastqRead read1830; read1830.setName("M00967_44_000000000-A3K85_1_1104_13045_9032"); + read1830.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(28); read1830.setScores(scores); + ffastqReads.push_back(read1830); + FastqRead read1831; read1831.setName("M00967_44_000000000-A3K85_1_1104_18581_9042"); + read1831.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1831.setScores(scores); + ffastqReads.push_back(read1831); + FastqRead read1832; read1832.setName("M00967_44_000000000-A3K85_1_1104_18059_9129"); + read1832.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1832.setScores(scores); + ffastqReads.push_back(read1832); + FastqRead read1833; read1833.setName("M00967_44_000000000-A3K85_1_1104_22553_9134"); + read1833.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1833.setScores(scores); + ffastqReads.push_back(read1833); + FastqRead read1834; read1834.setName("M00967_44_000000000-A3K85_1_1104_16292_9140"); + read1834.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGGGGGCGAGAAGTATGCGGAATGCGTGGGGTAGCGGTGAAATGCCTAGATATCACGCAGAAATCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAAAAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(29); scores.push_back(12); scores.push_back(29); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(28); scores.push_back(27); scores.push_back(16); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); read1834.setScores(scores); + ffastqReads.push_back(read1834); + FastqRead read1835; read1835.setName("M00967_44_000000000-A3K85_1_1104_12907_9239"); + read1835.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1835.setScores(scores); + ffastqReads.push_back(read1835); + FastqRead read1836; read1836.setName("M00967_44_000000000-A3K85_1_1104_7136_9279"); + read1836.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTGTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCCAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGGGAAATGCGTAGATATAAGGAGGACCCCCAGTGGGGAAGGCGGCCAGCTGGGCCATGATTGACCTTGGGGCCCAAAAGGCGGGGGGGAAAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1836.setScores(scores); + ffastqReads.push_back(read1836); + FastqRead read1837; read1837.setName("M00967_44_000000000-A3K85_1_1104_17424_9339"); + read1837.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1837.setScores(scores); + ffastqReads.push_back(read1837); + FastqRead read1838; read1838.setName("M00967_44_000000000-A3K85_1_1104_15063_9339"); + read1838.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1838.setScores(scores); + ffastqReads.push_back(read1838); + FastqRead read1839; read1839.setName("M00967_44_000000000-A3K85_1_1104_6757_9353"); + read1839.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGGGAGGCGCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(29); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1839.setScores(scores); + ffastqReads.push_back(read1839); + FastqRead read1840; read1840.setName("M00967_44_000000000-A3K85_1_1104_13313_9356"); + read1840.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1840.setScores(scores); + ffastqReads.push_back(read1840); + FastqRead read1841; read1841.setName("M00967_44_000000000-A3K85_1_1104_6974_9379"); + read1841.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTTAACCGCGGAACTGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1841.setScores(scores); + ffastqReads.push_back(read1841); + FastqRead read1842; read1842.setName("M00967_44_000000000-A3K85_1_1104_14433_9398"); + read1842.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); read1843.setScores(scores); + ffastqReads.push_back(read1843); + FastqRead read1844; read1844.setName("M00967_44_000000000-A3K85_1_1104_22639_9454"); + read1844.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1844.setScores(scores); + ffastqReads.push_back(read1844); + FastqRead read1845; read1845.setName("M00967_44_000000000-A3K85_1_1104_19637_9495"); + read1845.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1845.setScores(scores); + ffastqReads.push_back(read1845); + FastqRead read1846; read1846.setName("M00967_44_000000000-A3K85_1_1104_21327_9556"); + read1846.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1846.setScores(scores); + ffastqReads.push_back(read1846); + FastqRead read1847; read1847.setName("M00967_44_000000000-A3K85_1_1104_24707_9615"); + read1847.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1847.setScores(scores); + ffastqReads.push_back(read1847); + FastqRead read1848; read1848.setName("M00967_44_000000000-A3K85_1_1104_13256_9636"); + read1848.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1848.setScores(scores); + ffastqReads.push_back(read1848); + FastqRead read1849; read1849.setName("M00967_44_000000000-A3K85_1_1104_16521_9684"); + read1849.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1849.setScores(scores); + ffastqReads.push_back(read1849); + FastqRead read1850; read1850.setName("M00967_44_000000000-A3K85_1_1104_24096_9698"); + read1850.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1850.setScores(scores); + ffastqReads.push_back(read1850); + FastqRead read1851; read1851.setName("M00967_44_000000000-A3K85_1_1104_11342_9704"); + read1851.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1851.setScores(scores); + ffastqReads.push_back(read1851); + FastqRead read1852; read1852.setName("M00967_44_000000000-A3K85_1_1104_6351_9726"); + read1852.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(28); read1852.setScores(scores); + ffastqReads.push_back(read1852); + FastqRead read1853; read1853.setName("M00967_44_000000000-A3K85_1_1104_6361_9748"); + read1853.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1853.setScores(scores); + ffastqReads.push_back(read1853); + FastqRead read1854; read1854.setName("M00967_44_000000000-A3K85_1_1104_18909_9875"); + read1854.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1854.setScores(scores); + ffastqReads.push_back(read1854); + FastqRead read1855; read1855.setName("M00967_44_000000000-A3K85_1_1104_28199_9877"); + read1855.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCCTAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCCCGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1856.setScores(scores); + ffastqReads.push_back(read1856); + FastqRead read1857; read1857.setName("M00967_44_000000000-A3K85_1_1104_14159_10000"); + read1857.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAAATCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGTCTTGAGTGGGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1857.setScores(scores); + ffastqReads.push_back(read1857); + FastqRead read1858; read1858.setName("M00967_44_000000000-A3K85_1_1104_17165_10005"); + read1858.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1858.setScores(scores); + ffastqReads.push_back(read1858); + FastqRead read1859; read1859.setName("M00967_44_000000000-A3K85_1_1104_23360_10105"); + read1859.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1859.setScores(scores); + ffastqReads.push_back(read1859); + FastqRead read1860; read1860.setName("M00967_44_000000000-A3K85_1_1104_14248_10150"); + read1860.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1860.setScores(scores); + ffastqReads.push_back(read1860); + FastqRead read1861; read1861.setName("M00967_44_000000000-A3K85_1_1104_27137_10210"); + read1861.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1861.setScores(scores); + ffastqReads.push_back(read1861); + FastqRead read1862; read1862.setName("M00967_44_000000000-A3K85_1_1104_25593_10262"); + read1862.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1862.setScores(scores); + ffastqReads.push_back(read1862); + FastqRead read1863; read1863.setName("M00967_44_000000000-A3K85_1_1104_8760_10290"); + read1863.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1863.setScores(scores); + ffastqReads.push_back(read1863); + FastqRead read1864; read1864.setName("M00967_44_000000000-A3K85_1_1104_4312_10516"); + read1864.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGGAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1864.setScores(scores); + ffastqReads.push_back(read1864); + FastqRead read1865; read1865.setName("M00967_44_000000000-A3K85_1_1104_4330_10520"); + read1865.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCTAAGCAAGTCTGAAGTGAAAGCCCGGGGCTTAACCCCGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1865.setScores(scores); + ffastqReads.push_back(read1865); + FastqRead read1866; read1866.setName("M00967_44_000000000-A3K85_1_1104_3523_10559"); + read1866.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGACAACTGACGGTGAGGGGCGAAAGCGTGGGGAGCAAAAA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1866.setScores(scores); + ffastqReads.push_back(read1866); + FastqRead read1867; read1867.setName("M00967_44_000000000-A3K85_1_1104_22200_10638"); + read1867.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCGGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGTGCTCGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTCATGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1867.setScores(scores); + ffastqReads.push_back(read1867); + FastqRead read1868; read1868.setName("M00967_44_000000000-A3K85_1_1104_18565_10742"); + read1868.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1868.setScores(scores); + ffastqReads.push_back(read1868); + FastqRead read1869; read1869.setName("M00967_44_000000000-A3K85_1_1104_11859_10749"); + read1869.setSeq("TACGTAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGAAGTGAAAGCCCGTGGCTTAACCGCGGAACGGCTTTGGAAACTGTGGAACTGGAGTGCTGGAGAGGCAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(28); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1869.setScores(scores); + ffastqReads.push_back(read1869); + FastqRead read1870; read1870.setName("M00967_44_000000000-A3K85_1_1104_23378_10761"); + read1870.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCCACCGGAGAATTGCATCAGAAACTGTTTAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATATGGAAGAACACCAGTGGCGAAGGCGGCCCTCTGGTCTGCAACTGACGCTGAGGCTCGAAAGCATGGGTAGCGAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(27); scores.push_back(27); scores.push_back(37); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read1870.setScores(scores); + ffastqReads.push_back(read1870); + FastqRead read1871; read1871.setName("M00967_44_000000000-A3K85_1_1104_18177_10778"); + read1871.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1871.setScores(scores); + ffastqReads.push_back(read1871); + FastqRead read1872; read1872.setName("M00967_44_000000000-A3K85_1_1104_20823_10838"); + read1872.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGGAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1872.setScores(scores); + ffastqReads.push_back(read1872); + FastqRead read1873; read1873.setName("M00967_44_000000000-A3K85_1_1104_4174_10851"); + read1873.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); read1873.setScores(scores); + ffastqReads.push_back(read1873); + FastqRead read1874; read1874.setName("M00967_44_000000000-A3K85_1_1104_18406_10895"); + read1874.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGAAGTGAAAGCCCGCGGCCCAACTGCGGGACTGCTTTGGAAACTGCCCGGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1874.setScores(scores); + ffastqReads.push_back(read1874); + FastqRead read1875; read1875.setName("M00967_44_000000000-A3K85_1_1104_21868_10918"); + read1875.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1875.setScores(scores); + ffastqReads.push_back(read1875); + FastqRead read1876; read1876.setName("M00967_44_000000000-A3K85_1_1104_19137_10930"); + read1876.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACCGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1876.setScores(scores); + ffastqReads.push_back(read1876); + FastqRead read1877; read1877.setName("M00967_44_000000000-A3K85_1_1104_17725_10951"); + read1877.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1877.setScores(scores); + ffastqReads.push_back(read1877); + FastqRead read1878; read1878.setName("M00967_44_000000000-A3K85_1_1104_6518_10983"); + read1878.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1878.setScores(scores); + ffastqReads.push_back(read1878); + FastqRead read1879; read1879.setName("M00967_44_000000000-A3K85_1_1104_28556_10998"); + read1879.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1879.setScores(scores); + ffastqReads.push_back(read1879); + FastqRead read1880; read1880.setName("M00967_44_000000000-A3K85_1_1104_19200_11047"); + read1880.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1880.setScores(scores); + ffastqReads.push_back(read1880); + FastqRead read1881; read1881.setName("M00967_44_000000000-A3K85_1_1104_6536_11056"); + read1881.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); read1881.setScores(scores); + ffastqReads.push_back(read1881); + FastqRead read1882; read1882.setName("M00967_44_000000000-A3K85_1_1104_6552_11067"); + read1882.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1882.setScores(scores); + ffastqReads.push_back(read1882); + FastqRead read1883; read1883.setName("M00967_44_000000000-A3K85_1_1104_11872_11093"); + read1883.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1883.setScores(scores); + ffastqReads.push_back(read1883); + FastqRead read1884; read1884.setName("M00967_44_000000000-A3K85_1_1104_25891_11170"); + read1884.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTTAACCGCGGAACTGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1884.setScores(scores); + ffastqReads.push_back(read1884); + FastqRead read1885; read1885.setName("M00967_44_000000000-A3K85_1_1104_12169_11216"); + read1885.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAAAACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGGAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(25); read1885.setScores(scores); + ffastqReads.push_back(read1885); + FastqRead read1886; read1886.setName("M00967_44_000000000-A3K85_1_1104_3100_11250"); + read1886.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGTGTTTAAAGGGTGCGTAGGCGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGGTCACTGGACTGCAACTGACACTGATGATCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(18); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(14); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(30); scores.push_back(18); scores.push_back(30); scores.push_back(37); scores.push_back(18); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1886.setScores(scores); + ffastqReads.push_back(read1886); + FastqRead read1887; read1887.setName("M00967_44_000000000-A3K85_1_1104_3118_11257"); + read1887.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGTGTTTAAAGGGTGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(34); scores.push_back(18); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(25); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1887.setScores(scores); + ffastqReads.push_back(read1887); + FastqRead read1888; read1888.setName("M00967_44_000000000-A3K85_1_1104_22804_11304"); + read1888.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCATAGCAAGTCTGAAGTGAAAGCCCAAGGCTCAACCATGGGACTGCTTTGGAAACTGTTAAGCTAGAGTGCTGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAAGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1888.setScores(scores); + ffastqReads.push_back(read1888); + FastqRead read1889; read1889.setName("M00967_44_000000000-A3K85_1_1104_11825_11322"); + read1889.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1889.setScores(scores); + ffastqReads.push_back(read1889); + FastqRead read1890; read1890.setName("M00967_44_000000000-A3K85_1_1104_9159_11363"); + read1890.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGAGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGAACGAAAGTGCGGAGATCAAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(17); scores.push_back(17); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); 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scores.push_back(35); scores.push_back(14); scores.push_back(31); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(27); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); read1890.setScores(scores); + ffastqReads.push_back(read1890); + FastqRead read1891; read1891.setName("M00967_44_000000000-A3K85_1_1104_20121_11371"); + read1891.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGGTGGCAGGGCAAGTCAGATGTGAAAACCCGGGGCTCAACCCCGGGAGTGCATTTGAAACTGTCCAGCTGGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCATAGATATTAGGAGGAACACCAGTGGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); 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scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(30); scores.push_back(28); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(12); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1893.setScores(scores); + ffastqReads.push_back(read1893); + FastqRead read1894; read1894.setName("M00967_44_000000000-A3K85_1_1104_10615_11475"); + read1894.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1894.setScores(scores); + ffastqReads.push_back(read1894); + FastqRead read1895; read1895.setName("M00967_44_000000000-A3K85_1_1104_3818_11499"); + read1895.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(26); scores.push_back(34); scores.push_back(28); scores.push_back(35); scores.push_back(26); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(33); read1895.setScores(scores); + ffastqReads.push_back(read1895); + FastqRead read1896; read1896.setName("M00967_44_000000000-A3K85_1_1104_3401_11637"); + read1896.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1896.setScores(scores); + ffastqReads.push_back(read1896); + FastqRead read1897; read1897.setName("M00967_44_000000000-A3K85_1_1104_17657_11662"); + read1897.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1897.setScores(scores); + ffastqReads.push_back(read1897); + FastqRead read1898; read1898.setName("M00967_44_000000000-A3K85_1_1104_14580_11677"); + read1898.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1898.setScores(scores); + ffastqReads.push_back(read1898); + FastqRead read1899; read1899.setName("M00967_44_000000000-A3K85_1_1104_20760_11711"); + read1899.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1899.setScores(scores); + ffastqReads.push_back(read1899); + FastqRead read1900; read1900.setName("M00967_44_000000000-A3K85_1_1104_18045_11748"); + read1900.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGGATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(20); scores.push_back(20); scores.push_back(31); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(25); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1900.setScores(scores); + ffastqReads.push_back(read1900); + FastqRead read1901; read1901.setName("M00967_44_000000000-A3K85_1_1104_24143_11749"); + read1901.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGGGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1901.setScores(scores); + ffastqReads.push_back(read1901); + FastqRead read1902; read1902.setName("M00967_44_000000000-A3K85_1_1104_7967_11800"); + read1902.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1902.setScores(scores); + ffastqReads.push_back(read1902); + FastqRead read1903; read1903.setName("M00967_44_000000000-A3K85_1_1104_15472_11806"); + read1903.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(32); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1903.setScores(scores); + ffastqReads.push_back(read1903); + FastqRead read1904; read1904.setName("M00967_44_000000000-A3K85_1_1104_12930_11808"); + read1904.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGTTGACAAGTCAGATGTGAAATCCTGCGGCTTAACCGCAGAACTGCATTTGAAACTGTTGATCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1904.setScores(scores); + ffastqReads.push_back(read1904); + FastqRead read1905; read1905.setName("M00967_44_000000000-A3K85_1_1104_10575_11830"); + read1905.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1905.setScores(scores); + ffastqReads.push_back(read1905); + FastqRead read1906; read1906.setName("M00967_44_000000000-A3K85_1_1104_6233_11834"); + read1906.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1906.setScores(scores); + ffastqReads.push_back(read1906); + FastqRead read1907; read1907.setName("M00967_44_000000000-A3K85_1_1104_22380_11878"); + read1907.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAATGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); 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scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(18); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(13); 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scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(14); read1907.setScores(scores); + ffastqReads.push_back(read1907); + FastqRead read1908; read1908.setName("M00967_44_000000000-A3K85_1_1104_25591_11919"); + read1908.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGGAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(29); scores.push_back(36); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); read1908.setScores(scores); + ffastqReads.push_back(read1908); + FastqRead read1909; read1909.setName("M00967_44_000000000-A3K85_1_1104_25609_11922"); + read1909.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1909.setScores(scores); + ffastqReads.push_back(read1909); + FastqRead read1910; read1910.setName("M00967_44_000000000-A3K85_1_1104_19611_11936"); + read1910.setSeq("CACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1910.setScores(scores); + ffastqReads.push_back(read1910); + FastqRead read1911; read1911.setName("M00967_44_000000000-A3K85_1_1104_8970_11951"); + read1911.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1911.setScores(scores); + ffastqReads.push_back(read1911); + FastqRead read1912; read1912.setName("M00967_44_000000000-A3K85_1_1104_26292_12008"); + read1912.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTCCGTTAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTCGAGCCGTTGAAACTGGCAGACTTGAGTTGGCGAGAAGTACGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCGTACCGGCGCCAGACTGACGCTGAGGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1912.setScores(scores); + ffastqReads.push_back(read1912); + FastqRead read1913; read1913.setName("M00967_44_000000000-A3K85_1_1104_7545_12023"); + read1913.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1913.setScores(scores); + ffastqReads.push_back(read1913); + FastqRead read1914; read1914.setName("M00967_44_000000000-A3K85_1_1104_26807_12035"); + read1914.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1914.setScores(scores); + ffastqReads.push_back(read1914); + FastqRead read1915; read1915.setName("M00967_44_000000000-A3K85_1_1104_24990_12075"); + read1915.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1915.setScores(scores); + ffastqReads.push_back(read1915); + FastqRead read1916; read1916.setName("M00967_44_000000000-A3K85_1_1104_8263_12086"); + read1916.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGATCGTTAAGTCAGTGGTCAAATTGAGGGGCTCAACCCCTTCCCGCCATTGAAACTGGCGATCTTGAGTGGAAGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATGCCGGCTTCCTACTGACGCTGAAGCACGAAAGCGTGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1916.setScores(scores); + ffastqReads.push_back(read1916); + FastqRead read1917; read1917.setName("M00967_44_000000000-A3K85_1_1104_4134_12161"); + read1917.setSeq("TACGGAGGGGGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGTCGCAAGTCTGAAGTGAAAGCCCGTGGCTCAACCGCGGAACCGCTTTGGAAACTGCGAGGCTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACAGTGACTGACGTTGAGGCTCGAAAGCGTGGGGAGCGAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(12); read1917.setScores(scores); + ffastqReads.push_back(read1917); + FastqRead read1918; read1918.setName("M00967_44_000000000-A3K85_1_1104_27283_12162"); + read1918.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGTAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTATGTGACTGGAGTGCAGGAGAGGTGAGCAGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTCACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1918.setScores(scores); + ffastqReads.push_back(read1918); + FastqRead read1919; read1919.setName("M00967_44_000000000-A3K85_1_1104_14719_12167"); + read1919.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1919.setScores(scores); + ffastqReads.push_back(read1919); + FastqRead read1920; read1920.setName("M00967_44_000000000-A3K85_1_1104_15406_12184"); + read1920.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1921.setScores(scores); + ffastqReads.push_back(read1921); + FastqRead read1922; read1922.setName("M00967_44_000000000-A3K85_1_1104_11812_12239"); + read1922.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); read1922.setScores(scores); + ffastqReads.push_back(read1922); + FastqRead read1923; read1923.setName("M00967_44_000000000-A3K85_1_1104_26672_12271"); + read1923.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATGACTGGGCGTAAAGGGTGCGTAGGTGGTTTGACAAGTTGGTAGCGCAACTCCGAGGCTTAACCTCGGCACTACTACCAAAACTGTTGGACTCGAGTGCAGGAGGGGCAAATGGAATTCCTAGTGTAGCGGTGGAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGATTTGCTGGACTGTGACTGACACTGAGGCACGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1923.setScores(scores); + ffastqReads.push_back(read1923); + FastqRead read1924; read1924.setName("M00967_44_000000000-A3K85_1_1104_3680_12350"); + read1924.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGTGCAGGCGGTTCAATAAGTCTGATGTGAAAGCCTTCGGCTCAACCGGAGAATTGCATCAGAAACTGTTTAACTTGAGTGCAGAAGAGGAGAGTGGAACTCCATGTGTAGCGGTGGAATGCGTAGATATTTGGGAGAACACCCGTGGCGAAGGCGGCTCTCTGGGCTGCAACTGACGCTGAGGCTCGAAAGCCTGGGGAGGGAAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(16); scores.push_back(18); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(19); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(19); scores.push_back(31); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(18); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(19); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(33); scores.push_back(17); scores.push_back(31); scores.push_back(31); scores.push_back(17); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(28); scores.push_back(16); scores.push_back(16); scores.push_back(28); scores.push_back(27); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(27); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); read1924.setScores(scores); + ffastqReads.push_back(read1924); + FastqRead read1925; read1925.setName("M00967_44_000000000-A3K85_1_1104_5443_12369"); + read1925.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1925.setScores(scores); + ffastqReads.push_back(read1925); + FastqRead read1926; read1926.setName("M00967_44_000000000-A3K85_1_1104_3663_12426"); + read1926.setSeq("TACGGCGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(17); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(27); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); read1926.setScores(scores); + ffastqReads.push_back(read1926); + FastqRead read1927; read1927.setName("M00967_44_000000000-A3K85_1_1104_28218_12477"); + read1927.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1927.setScores(scores); + ffastqReads.push_back(read1927); + FastqRead read1928; read1928.setName("M00967_44_000000000-A3K85_1_1104_3016_12486"); + read1928.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); read1928.setScores(scores); + ffastqReads.push_back(read1928); + FastqRead read1929; read1929.setName("M00967_44_000000000-A3K85_1_1104_10709_12664"); + read1929.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1929.setScores(scores); + ffastqReads.push_back(read1929); + FastqRead read1930; read1930.setName("M00967_44_000000000-A3K85_1_1104_7475_12746"); + read1930.setSeq("TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGCGTGCGTAGGCTGTTTCGTAAGTCGTGTGTGAAAGGCGCGGGCTCAACCCGCGGACGGCACATGATACTGCGAGACTAGAGTAATGGAGGGGGAACCGGAATTCTCGGTGTAGCAGTGAAATGCGTAGATATCGAGAGGAACACTCGTGGCGAAGGCGGGTTCCTGGACATTAACTGACGCTGAGGCACGAAGGCCAGGGGAGCGAAAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(29); scores.push_back(32); read1930.setScores(scores); + ffastqReads.push_back(read1930); + FastqRead read1931; read1931.setName("M00967_44_000000000-A3K85_1_1104_17811_12782"); + read1931.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); read1931.setScores(scores); + ffastqReads.push_back(read1931); + FastqRead read1932; read1932.setName("M00967_44_000000000-A3K85_1_1104_23685_12790"); + read1932.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCGAAGAAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAATGGCTTTGGAAACTTTTTTGCTGGAGTACCGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACGGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1932.setScores(scores); + ffastqReads.push_back(read1932); + FastqRead read1933; read1933.setName("M00967_44_000000000-A3K85_1_1104_26965_12883"); + read1933.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1934.setScores(scores); + ffastqReads.push_back(read1934); + FastqRead read1935; read1935.setName("M00967_44_000000000-A3K85_1_1104_2573_12995"); + read1935.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACCGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGGTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATAAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGGAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); 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scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); read1935.setScores(scores); + ffastqReads.push_back(read1935); + FastqRead read1936; read1936.setName("M00967_44_000000000-A3K85_1_1104_5139_13157"); + read1936.setSeq("TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGAGCGCGCAGGTGGTTAATTAAGTCTGATGTGAAAGCCCACGGCTTAACCGTGGAGGGTCATTGGAAACTGGTTGACTTGAGTGCAGAAGAGGGAAGTGGAATTCCATGTGTAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAGGCGGCTTCCTGGTCTGCAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); read1936.setScores(scores); + ffastqReads.push_back(read1936); + FastqRead read1937; read1937.setName("M00967_44_000000000-A3K85_1_1104_16358_13218"); + read1937.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); read1937.setScores(scores); + ffastqReads.push_back(read1937); + FastqRead read1938; read1938.setName("M00967_44_000000000-A3K85_1_1104_2533_13244"); + read1938.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1938.setScores(scores); + ffastqReads.push_back(read1938); + FastqRead read1939; read1939.setName("M00967_44_000000000-A3K85_1_1104_8491_13331"); + read1939.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGCGCAAGTCTGGAGTGAAATGCCGGGGCCCAACCCCGGAACTGCTTTGGAAACTGTGCAGCTCGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1939.setScores(scores); + ffastqReads.push_back(read1939); + FastqRead read1940; read1940.setName("M00967_44_000000000-A3K85_1_1104_16846_13370"); + read1940.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCATGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1940.setScores(scores); + ffastqReads.push_back(read1940); + FastqRead read1941; read1941.setName("M00967_44_000000000-A3K85_1_1104_9917_13371"); + read1941.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGAAGTGAAAGGCGGGGGCTCAACCCCCGGACTGCTTTGGAAACTGTATGACTGGAGTGCAGGAGAGGTAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1941.setScores(scores); + ffastqReads.push_back(read1941); + FastqRead read1942; read1942.setName("M00967_44_000000000-A3K85_1_1104_21146_13421"); + read1942.setSeq("TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCAGGCGGCGCGTTAAGCCTGGTGTGAAAGCCCGCGGCCCAACCGCGGGACTGCATTGGGAACTGGCGCGCTGGAGTGCCGGAGGGGTAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTACTGGACGGTGACTGACGCTGAGGATCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(29); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1942.setScores(scores); + ffastqReads.push_back(read1942); + FastqRead read1943; read1943.setName("M00967_44_000000000-A3K85_1_1104_7472_13455"); + read1943.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); read1943.setScores(scores); + ffastqReads.push_back(read1943); + FastqRead read1944; read1944.setName("M00967_44_000000000-A3K85_1_1104_16819_13504"); + read1944.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1944.setScores(scores); + ffastqReads.push_back(read1944); + FastqRead read1945; read1945.setName("M00967_44_000000000-A3K85_1_1104_26606_13580"); + read1945.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1945.setScores(scores); + ffastqReads.push_back(read1945); + FastqRead read1946; read1946.setName("M00967_44_000000000-A3K85_1_1104_22540_13596"); + read1946.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAGCCAAGTCAGCTGTGAAAACTACGGGCTTAACCTGTAGACTGCAGTTGAAACTGGCTTTCTTGAGTGAAGTAGAGGTTGGCGGAATTCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCGGTGGCGAAGGCGGCCAACTGGGCTTTAACTGACGCTGAGGCTCGAAAGTGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1946.setScores(scores); + ffastqReads.push_back(read1946); + FastqRead read1947; read1947.setName("M00967_44_000000000-A3K85_1_1104_12931_13651"); + read1947.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTGTGCAAGTCTGAAGTGAAAGCCCGCGGCTCAACTGCGGAACGGCTTTGGAAACTGTGTAACTGGAGTGCTGGAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGAGATCAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1947.setScores(scores); + ffastqReads.push_back(read1947); + FastqRead read1948; read1948.setName("M00967_44_000000000-A3K85_1_1104_14298_13656"); + read1948.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); read1948.setScores(scores); + ffastqReads.push_back(read1948); + FastqRead read1949; read1949.setName("M00967_44_000000000-A3K85_1_1104_14282_13667"); + read1949.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1949.setScores(scores); + ffastqReads.push_back(read1949); + FastqRead read1950; read1950.setName("M00967_44_000000000-A3K85_1_1104_27976_13687"); + read1950.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGCAGCCGGAGAGACAAGTCAGATGTGAAATCCACGGGCTCAACCCGTGAACTGCATTTGAAACTGTTTCCCTTGAGTGTCGGAGAGGTCATCGGAATTCCTTGTGTAGCGGTGAAATGCGTAGATATAAGGAAGAACACCAGTGGCGAAGGCGGATGACTGGACGATAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1950.setScores(scores); + ffastqReads.push_back(read1950); + FastqRead read1951; read1951.setName("M00967_44_000000000-A3K85_1_1104_19232_13777"); + read1951.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); read1951.setScores(scores); + ffastqReads.push_back(read1951); + FastqRead read1952; read1952.setName("M00967_44_000000000-A3K85_1_1104_17747_13789"); + read1952.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1952.setScores(scores); + ffastqReads.push_back(read1952); + FastqRead read1953; read1953.setName("M00967_44_000000000-A3K85_1_1104_26553_13825"); + read1953.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1953.setScores(scores); + ffastqReads.push_back(read1953); + FastqRead read1954; read1954.setName("M00967_44_000000000-A3K85_1_1104_26212_13904"); + read1954.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); read1954.setScores(scores); + ffastqReads.push_back(read1954); + FastqRead read1955; read1955.setName("M00967_44_000000000-A3K85_1_1104_9328_13911"); + read1955.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1955.setScores(scores); + ffastqReads.push_back(read1955); + FastqRead read1956; read1956.setName("M00967_44_000000000-A3K85_1_1104_3300_13940"); + read1956.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGTTGACAAGTCAGATGTGAAATCCTGCGGCTTAACCGCAGAACTGCATTTGAAACTGTTGATCTTGAGTACTGGAGAGGCAGACGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGTCTGCTGGACAGCAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1956.setScores(scores); + ffastqReads.push_back(read1956); + FastqRead read1957; read1957.setName("M00967_44_000000000-A3K85_1_1104_7871_13952"); + read1957.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGCTGACAAGTCAGATGTGAAATCCGGGGGCTCAACCCCCGAACTGCATTTGAAACTGTTGGTCTTGAGTATCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGCGGCGAAGGCGGCTTACTGGACAGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1957.setScores(scores); + ffastqReads.push_back(read1957); + FastqRead read1958; read1958.setName("M00967_44_000000000-A3K85_1_1104_10321_14031"); + read1958.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1958.setScores(scores); + ffastqReads.push_back(read1958); + FastqRead read1959; read1959.setName("M00967_44_000000000-A3K85_1_1104_15706_14032"); + read1959.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1959.setScores(scores); + ffastqReads.push_back(read1959); + FastqRead read1960; read1960.setName("M00967_44_000000000-A3K85_1_1104_27074_14041"); + read1960.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1960.setScores(scores); + ffastqReads.push_back(read1960); + FastqRead read1961; read1961.setName("M00967_44_000000000-A3K85_1_1104_22266_14100"); + read1961.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1961.setScores(scores); + ffastqReads.push_back(read1961); + FastqRead read1962; read1962.setName("M00967_44_000000000-A3K85_1_1104_24767_14100"); + read1962.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1963.setScores(scores); + ffastqReads.push_back(read1963); + FastqRead read1964; read1964.setName("M00967_44_000000000-A3K85_1_1104_19639_14254"); + read1964.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1964.setScores(scores); + ffastqReads.push_back(read1964); + FastqRead read1965; read1965.setName("M00967_44_000000000-A3K85_1_1104_26260_14274"); + read1965.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1965.setScores(scores); + ffastqReads.push_back(read1965); + FastqRead read1966; read1966.setName("M00967_44_000000000-A3K85_1_1104_11150_14302"); + read1966.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1966.setScores(scores); + ffastqReads.push_back(read1966); + FastqRead read1967; read1967.setName("M00967_44_000000000-A3K85_1_1104_24281_14456"); + read1967.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1967.setScores(scores); + ffastqReads.push_back(read1967); + FastqRead read1968; read1968.setName("M00967_44_000000000-A3K85_1_1104_27607_14496"); + read1968.setSeq("TACGTAGGGAGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGTGCGTAGGCGGCCTTTCAAGTCAGAAGTGAAATCCATGGGCTTAACCCGTGACCTGCTTTTGAAACTGTAGGGCTTGAGTGAAGTAGAGGCAGGCGGATTTGCCGGGTTGGGGGGGAAATCCGTAGAAATCCGGAGGAACACCAGTGGGGAGGGAGGCCTCCGGGGCCTTAATTGCGGCTGAGGCCCGAAATGCGGGGGTGGAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(27); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(29); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); read1968.setScores(scores); + ffastqReads.push_back(read1968); + FastqRead read1969; read1969.setName("M00967_44_000000000-A3K85_1_1104_4012_14514"); + read1969.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCTGCCAAGTCAGCGGTAAAATTGCGGGGCTCAACCCCGTACAGCCGTTGAAACTGCCGGGCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGTGCGGGGATCAAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1969.setScores(scores); + ffastqReads.push_back(read1969); + FastqRead read1970; read1970.setName("M00967_44_000000000-A3K85_1_1104_20546_14532"); + read1970.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1970.setScores(scores); + ffastqReads.push_back(read1970); + FastqRead read1971; read1971.setName("M00967_44_000000000-A3K85_1_1104_21479_14540"); + read1971.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); read1971.setScores(scores); + ffastqReads.push_back(read1971); + FastqRead read1972; read1972.setName("M00967_44_000000000-A3K85_1_1104_7548_14543"); + read1972.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1972.setScores(scores); + ffastqReads.push_back(read1972); + FastqRead read1973; read1973.setName("M00967_44_000000000-A3K85_1_1104_20123_14567"); + read1973.setSeq("TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGTGGATTGTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGGCAGTCTTGAGTACAGTAGAGGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGTGGGTATCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); read1973.setScores(scores); + ffastqReads.push_back(read1973); + FastqRead read1974; read1974.setName("M00967_44_000000000-A3K85_1_1104_5880_14621"); + read1974.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); read1974.setScores(scores); + ffastqReads.push_back(read1974); + FastqRead read1975; read1975.setName("M00967_44_000000000-A3K85_1_1104_18049_14622"); + read1975.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTTTTAAGTCAGCGGTAAAAATTCGGGGCTCAACCCCGTCCGGCCGTTGAAACTGGGGGCCTTGAGTGGGCGAGAAGAAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTTCCGGCGCCCTACTGACGCTGAGGCACGAAAGTGCGGGGATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1976.setScores(scores); + ffastqReads.push_back(read1976); + FastqRead read1977; read1977.setName("M00967_44_000000000-A3K85_1_1104_28185_14651"); + read1977.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTATCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); read1977.setScores(scores); + ffastqReads.push_back(read1977); + FastqRead read1978; read1978.setName("M00967_44_000000000-A3K85_1_1104_25242_14657"); + read1978.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGCGCCGTTGAAACTGGTTTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); read1978.setScores(scores); + ffastqReads.push_back(read1978); + FastqRead read1979; read1979.setName("M00967_44_000000000-A3K85_1_1104_27029_14729"); + read1979.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTCCTGCAAGCCAGATGTGAAAGCCCGGGGCTCAACCCCGGGACTGCATTTGGAACTGTAAGGCTAGAGTGTCGGAGAGGCAGGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCCTGCTGGACGATGACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(24); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1979.setScores(scores); + ffastqReads.push_back(read1979); + FastqRead read1980; read1980.setName("M00967_44_000000000-A3K85_1_1104_13740_14801"); + read1980.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGCTGTTAAGTCAGCGGTCAAATGTCGGGGCTCAACCCCGGCCTGCCGTTGAAACTGGCGGCCTCGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCGACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(37); read1980.setScores(scores); + ffastqReads.push_back(read1980); + FastqRead read1981; read1981.setName("M00967_44_000000000-A3K85_1_1104_17772_14830"); + read1981.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); read1981.setScores(scores); + ffastqReads.push_back(read1981); + FastqRead read1982; read1982.setName("M00967_44_000000000-A3K85_1_1104_24476_14858"); + read1982.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGCCAAGTCAGCGGTAAAAAAGCGGTGCTCAACGCCGTCGAGCCGTTGAAACTGGCGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCTACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); read1982.setScores(scores); + ffastqReads.push_back(read1982); + FastqRead read1983; read1983.setName("M00967_44_000000000-A3K85_1_1104_14869_14861"); + read1983.setSeq("TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGTAGACGGTGATGCAAGTCTGGAGTGAAAGGCGGGGGCCCAACCCCCGGACTGCTCTGGAAACTGTGTAACTTGAGTGCAGGAGAGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTACTGGACTGTAACTGACGTTGAGGCTCGAAAGCGGGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(25); scores.push_back(13); scores.push_back(13); read1983.setScores(scores); + ffastqReads.push_back(read1983); + FastqRead read1984; read1984.setName("M00967_44_000000000-A3K85_1_1104_22534_14956"); + read1984.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGTTTGTCAAGTCAGCGGTAAAAATTCCGGGCTCAACCCGGTCCCGCCGTTGAAACTGGCGAACTCGAGAGGGAGAGAAGTAGGCGGAATGCGCAGTGTAGCGGTGAAATGCATAGATATTGCGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCTCCTGTCTGACGCTGAGGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1984.setScores(scores); + ffastqReads.push_back(read1984); + FastqRead read1985; read1985.setName("M00967_44_000000000-A3K85_1_1104_12713_15087"); + read1985.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); read1985.setScores(scores); + ffastqReads.push_back(read1985); + FastqRead read1986; read1986.setName("M00967_44_000000000-A3K85_1_1104_17909_15122"); + read1986.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1986.setScores(scores); + ffastqReads.push_back(read1986); + FastqRead read1987; read1987.setName("M00967_44_000000000-A3K85_1_1104_18431_15143"); + read1987.setSeq("TACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGTAGGCGGGAAGCCAAGTCAGCTGTGAAAACTACGGGCTTAACCTGTAGACTGCAGTTGAAACTGGCTTTCTTGAGTGAAGTAGAGGTTGGCGGAATTCCGAGTGTAGCGGTGAAATGCGTAGATATTCGGAGGAACACCGGTGGCGAAGGCGGCCAACTGGGCTTTAACTGACGCTGAGGCTCGAAAGTGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1987.setScores(scores); + ffastqReads.push_back(read1987); + FastqRead read1988; read1988.setName("M00967_44_000000000-A3K85_1_1104_10740_15149"); + read1988.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); read1989.setScores(scores); + ffastqReads.push_back(read1989); + FastqRead read1990; read1990.setName("M00967_44_000000000-A3K85_1_1104_19161_15180"); + read1990.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1990.setScores(scores); + ffastqReads.push_back(read1990); + FastqRead read1991; read1991.setName("M00967_44_000000000-A3K85_1_1104_26250_15197"); + read1991.setSeq("TACGTAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGGATGTCAAGTCAGCGGTAAAATTGTGGAGCTCAACTCCATCGAGCCGTTGAAACTGACGTTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGGAGCGGGGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGGAGGATACCGGCGCCCTACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); 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scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); read1991.setScores(scores); + ffastqReads.push_back(read1991); + FastqRead read1992; read1992.setName("M00967_44_000000000-A3K85_1_1104_8064_15199"); + read1992.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGGATGCCAAGTCAGCGGTCAAATTTCGGGGCTCAACCCCGACCTGCCGTTGAAACTGGTGTCCTAGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); read1992.setScores(scores); + ffastqReads.push_back(read1992); + FastqRead read1993; read1993.setName("M00967_44_000000000-A3K85_1_1104_3441_15248"); + read1993.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTATGTAAGTCTGAAGTGAAAGCCCGGGGCCCAACCCCGGGACTGCTTTGGAAACTGTGTAACTAGAGTACAGGAGGGGCAGGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACACCGGCGGCGAAGGCGGCCTGCTGGACTGAAACTGACGTTGAGGCTCGAAAGCGTGGGGGGCAAACA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(19); scores.push_back(18); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); read1993.setScores(scores); + ffastqReads.push_back(read1993); + FastqRead read1994; read1994.setName("M00967_44_000000000-A3K85_1_1104_15936_15317"); + read1994.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGACAGTTAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCCCGCCGTTGAAACTGATTGTCTTGAGTGGGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCCCAACTGACGCTGAAGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1994.setScores(scores); + ffastqReads.push_back(read1994); + FastqRead read1995; read1995.setName("M00967_44_000000000-A3K85_1_1104_24379_15369"); + read1995.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1995.setScores(scores); + ffastqReads.push_back(read1995); + FastqRead read1996; read1996.setName("M00967_44_000000000-A3K85_1_1104_9205_15423"); + read1996.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(37); read1996.setScores(scores); + ffastqReads.push_back(read1996); + FastqRead read1997; read1997.setName("M00967_44_000000000-A3K85_1_1104_4689_15461"); + read1997.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGAAGATCAAGTCAGCGGTAAAATTGAGAGGCTCAACCTCTTCGAGCCGTTGAAACTGGTTTTCTTGAGTGAGCGAGAAGTATGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCATACCGGCGCTCAACTGACGCTCATGCACGAAAGTGTGGGTATCGAACAG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(33); read1997.setScores(scores); + ffastqReads.push_back(read1997); + FastqRead read1998; read1998.setName("M00967_44_000000000-A3K85_1_1104_25054_15469"); + read1998.setSeq("TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGAACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1998.setScores(scores); + ffastqReads.push_back(read1998); + FastqRead read1999; read1999.setName("M00967_44_000000000-A3K85_1_1104_11182_15477"); + read1999.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTGCGCCAAGTCTGGAGTGAAATGCCGCAGCTTAACTGCGGAACTGCTTTGGAAACTGGCGGACTAGAGTGCGGGAGGGGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCGGTGGCGAAGGCGGCTTACTGGACCGTAACTGACGTTGAGGCTCGAAAGCGTGGGGAGCAAACA"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1999.setScores(scores); + ffastqReads.push_back(read1999); +} + +/*************************************************************************/ + +void TestFastqDataSet::fillReverseFastq() { + vector scores; + FastqRead read1; read1.setName("M00967_44_000000000-A3K85_1_1101_16426_1716"); + read1.setSeq("CCTGTTCGATACACACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATAGGAGTTATGCGTGATATCTATGCATTTCACCGCTACACAACGCATTCCGCCTAATTATTGCGAAATAAAGGCTCCCAGTTTCAAAGGCGGAACGGGGTTGAGGCCCGGGATTTTACCGCTGAATTGAGAGTACGACTGGGGACTCTTTAAAGTCAATAAATCTGGATAAAGGTGGCATACTCAGT"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(18); scores.push_back(29); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(17); scores.push_back(31); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(16); scores.push_back(30); scores.push_back(27); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(14); scores.push_back(29); scores.push_back(27); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(13); scores.push_back(16); scores.push_back(27); scores.push_back(29); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(27); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); read1.setScores(scores); + rfastqReads.push_back(read1); + FastqRead read2; read2.setName("M00967_44_000000000-A3K85_1_1101_13261_1978"); + read2.setSeq("CTTGTTTGCTCCCCACGCTTTCGAGACTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTAGGCGCCGGTGTTCCTCATGATATCTACGCATTTAACCGCTACACCAGGAATTTCGCCTGCACCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTTCCGGGGTTGGGACCCGGGGTTTCACTTCAGACTTACATAAACGTCTAAGCTTCCTTTACACACAGTAAATCCGGATAAAGATTGGCACCTAAG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(29); scores.push_back(17); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(29); scores.push_back(14); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(31); scores.push_back(30); scores.push_back(14); scores.push_back(27); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); read2.setScores(scores); + rfastqReads.push_back(read2); + FastqRead read3; read3.setName("M00967_44_000000000-A3K85_1_1101_13914_2140"); + read3.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTTCAGACTTGGAGCACCGTCTACGATCCCTTTACATCTAGTAAATCCGGATAACGATTGTCCCCTACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(16); scores.push_back(31); scores.push_back(15); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(30); scores.push_back(27); scores.push_back(31); scores.push_back(29); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(27); scores.push_back(15); scores.push_back(28); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(28); scores.push_back(27); scores.push_back(27); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(36); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(32); read3.setScores(scores); + rfastqReads.push_back(read3); + FastqRead read4; read4.setName("M00967_44_000000000-A3K85_1_1101_14317_2429"); + read4.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCACCGCAATTTTACCGATGAATTAACGGGACGCCTAAGGACCCTTTTAAACTAATAAATTCGGATAAAGGTCGCATTCTTCGT"); + scores.clear(); scores.push_back(18); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(30); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(27); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(27); scores.push_back(35); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); read4.setScores(scores); + rfastqReads.push_back(read4); + FastqRead read5; read5.setName("M00967_44_000000000-A3K85_1_1101_16984_2484"); + read5.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGCTGCAGTTTTGAGTGCGACTATCGGTTGAGCCGGTAGTTTTGACAACCAACTTGCATCCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(20); scores.push_back(20); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read6.setScores(scores); + rfastqReads.push_back(read6); + FastqRead read7; read7.setName("M00967_44_000000000-A3K85_1_1101_20204_2681"); + read7.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(28); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read7.setScores(scores); + rfastqReads.push_back(read7); + FastqRead read8; read8.setName("M00967_44_000000000-A3K85_1_1101_9845_2818"); + read8.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGNNNNNNNNNNNNNNNNNNCNNCNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); read8.setScores(scores); + rfastqReads.push_back(read8); + FastqRead read9; read9.setName("M00967_44_000000000-A3K85_1_1101_19657_2857"); + read9.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(20); scores.push_back(37); 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scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(13); read9.setScores(scores); + rfastqReads.push_back(read9); + FastqRead read10; read10.setName("M00967_44_000000000-A3K85_1_1101_12105_3062"); + read10.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATTGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGTGCACTCGAGGCCGCCAGTTTCAAAGGCAGGGCGGGGTTGAGGCCCGAGATTTTAACGGTGGATTTAAAGGGCGGTTACGGACCCTTTAAAACCAATAAATTTGGATAAAGGTCGGATCCTCTGG"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(20); scores.push_back(32); scores.push_back(32); scores.push_back(17); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); 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scores.push_back(31); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); read10.setScores(scores); + rfastqReads.push_back(read10); + FastqRead read11; read11.setName("M00967_44_000000000-A3K85_1_1101_18891_3237"); + read11.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCCTCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read11.setScores(scores); + rfastqReads.push_back(read11); + FastqRead read12; read12.setName("M00967_44_000000000-A3K85_1_1101_14107_3251"); + read12.setSeq("CCTGTTCGATGCCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCAAGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGGTTTAAAAGGGCGCGTTAGGGCCGTTTAAAACCAATAAATCTGGATAACGCTCGCATCCTAAGG"); + scores.clear(); scores.push_back(29); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(20); scores.push_back(29); scores.push_back(33); scores.push_back(38); 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scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); read12.setScores(scores); + rfastqReads.push_back(read12); + FastqRead read13; read13.setName("M00967_44_000000000-A3K85_1_1101_17862_3303"); + read13.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTTACTTGGCATCCCGCCTACCCACCCCTTTAACCCAAAAAATCCGGATAAACGTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read13.setScores(scores); + rfastqReads.push_back(read13); + FastqRead read14; read14.setName("M00967_44_000000000-A3K85_1_1101_16892_3727"); + read14.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(28); scores.push_back(28); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read14.setScores(scores); + rfastqReads.push_back(read14); + FastqRead read15; read15.setName("M00967_44_000000000-A3K85_1_1101_19976_3934"); + read15.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCCCGGCAGTTTCAAAAGCAGTCCCAGGGTTGAGCCCTGGGCTTTCACTTCTGACTTGTCTGGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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+ scores.clear(); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(13); scores.push_back(25); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); read16.setScores(scores); + rfastqReads.push_back(read16); + FastqRead read17; read17.setName("M00967_44_000000000-A3K85_1_1101_15081_3972"); + read17.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTTTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGAACGCTGAATTAAAAGGCCGGCTAGGGACCCTTTAAAACCAATAAATTCGGATAACAGTTGCAACCTTCGT"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); read17.setScores(scores); + rfastqReads.push_back(read17); + FastqRead read18; read18.setName("M00967_44_000000000-A3K85_1_1101_22821_4157"); + read18.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATTTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTACTCCACTCAAGAAAAACAGTTTTGAACGCTTGTACAGGTTGAGCCCGTACCTTAAACATTCAACTTGCTTTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCCACCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); read18.setScores(scores); + rfastqReads.push_back(read18); + FastqRead read19; read19.setName("M00967_44_000000000-A3K85_1_1101_17852_4185"); + read19.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); read19.setScores(scores); + rfastqReads.push_back(read19); + FastqRead read20; read20.setName("M00967_44_000000000-A3K85_1_1101_18480_4201"); + read20.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGGGCACCCTTTAAACCCAATCAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(30); scores.push_back(29); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); read20.setScores(scores); + rfastqReads.push_back(read20); + FastqRead read21; read21.setName("M00967_44_000000000-A3K85_1_1101_23838_4345"); + read21.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGCTACTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); read21.setScores(scores); + rfastqReads.push_back(read21); + FastqRead read22; read22.setName("M00967_44_000000000-A3K85_1_1101_18767_4363"); + read22.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTCGCGCCCCAGTATCCTGCCTTCGCAATCGGAGTTCCTCCTAATATCTATGCATTTCACCGCTACACCAGGCATTCCGTCTACCTCTCACGCACTCGAGGCCGCCAGTTTCAACAGCAGGCCGCAGGTGAGCCCCGCCATTTTACACTCGGCCCATACTCCCCCACCAGCCCCCCTTTAAACCCACAAAAACGGGAAAACGCCCCCTCATCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(29); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); read22.setScores(scores); + rfastqReads.push_back(read22); + FastqRead read23; read23.setName("M00967_44_000000000-A3K85_1_1101_23688_4365"); + read23.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGAGCCCCGCAATTTTACCGCCGACTTTGCAATCCCCCTGCGCACCCCTTAAAACCCAAAAATCCCGATAAAGCCCCCCTACTACC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(14); read23.setScores(scores); + rfastqReads.push_back(read23); + FastqRead read24; read24.setName("M00967_44_000000000-A3K85_1_1101_11722_4402"); + read24.setSeq("CCTGTTTGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGGGCCGGTAGGCTGCTTTCGCAATTGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACAAGGAATTCCGCCTTCTTCTTGTGCACTCAAGGCTCCCAGTTTCAAAGGCGGAACGGGGGTGAGGCCGGAGGGTTGAACGTTGAATTGAGAGTACGGCTGGGGGACCTTTTAAGCCAATAAATTAGGATAAAGGTTGGATACTTAGG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(29); scores.push_back(33); scores.push_back(27); scores.push_back(36); scores.push_back(29); scores.push_back(29); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(27); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(27); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); read24.setScores(scores); + rfastqReads.push_back(read24); + FastqRead read25; read25.setName("M00967_44_000000000-A3K85_1_1101_17907_4466"); + read25.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCCGGGTGTACCCCGGATTTTTTTCGCCTCCTTGGCAAAACGCCCCCGCCCCCCCTAAACCCCACAAAACCGCATAACACTCTCCACCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); read25.setScores(scores); + rfastqReads.push_back(read25); + FastqRead read26; read26.setName("M00967_44_000000000-A3K85_1_1101_24292_4560"); + read26.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGACCGCCTAAGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(28); scores.push_back(28); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); read26.setScores(scores); + rfastqReads.push_back(read26); + FastqRead read27; read27.setName("M00967_44_000000000-A3K85_1_1101_10051_4697"); + read27.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTCCGCTCCCTTTACACCCAGTAAATCCGGCTAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(28); scores.push_back(32); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); read27.setScores(scores); + rfastqReads.push_back(read27); + FastqRead read28; read28.setName("M00967_44_000000000-A3K85_1_1101_23618_4708"); + read28.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTTGCCACTGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCACTTGCCTCTCCGACACTCTAGATATACAGTTTCCAATGCAGTTCCGGGGTTGGGCCCCGGATTTTCACATCAGACTTGCAAGTCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(13); read29.setScores(scores); + rfastqReads.push_back(read29); + FastqRead read30; read30.setName("M00967_44_000000000-A3K85_1_1101_8858_5007"); + read30.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGCCTTGCATCACCGTCTACGCTCCCTTTCCCCCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read30.setScores(scores); + rfastqReads.push_back(read30); + FastqRead read31; read31.setName("M00967_44_000000000-A3K85_1_1101_8790_5160"); + read31.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCCCGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGTCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTACACCCACTAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); read31.setScores(scores); + rfastqReads.push_back(read31); + FastqRead read32; read32.setName("M00967_44_000000000-A3K85_1_1101_24227_5213"); + read32.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); 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scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); read32.setScores(scores); + rfastqReads.push_back(read32); + FastqRead read33; read33.setName("M00967_44_000000000-A3K85_1_1101_20401_5218"); + read33.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(40); scores.push_back(40); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read33.setScores(scores); + rfastqReads.push_back(read33); + FastqRead read34; read34.setName("M00967_44_000000000-A3K85_1_1101_20650_5286"); + read34.setSeq("CCTGTTCGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGCCGCCGGTACGCTGCCTTCGCCATCGGAGTTCTGCCCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCCACTCCAGTCTGCCAGTTCCCACGGCTCGCCGGGGGTTAGCCCCGCACATTTACCGCCGACCTTACAGGCCGCCTACGCCCCCCTTTACACCCACTAATCCGGGTAAACGCCCCCCCCCCCCA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(20); scores.push_back(20); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(18); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(12); scores.push_back(29); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read34.setScores(scores); + rfastqReads.push_back(read34); + FastqRead read35; read35.setName("M00967_44_000000000-A3K85_1_1101_24147_5290"); + read35.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGAAATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAAAAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read35.setScores(scores); + rfastqReads.push_back(read35); + FastqRead read36; read36.setName("M00967_44_000000000-A3K85_1_1101_21922_5302"); + read36.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(19); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read36.setScores(scores); + rfastqReads.push_back(read36); + FastqRead read37; read37.setName("M00967_44_000000000-A3K85_1_1101_16472_5337"); + read37.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGAAGGGGTTGAGGCCCGCAATTTTACCGCTGAATTAAAGGGACGGCTAAGGAACCTTTAAAACCAATAAATACGGATAAAGCTTGCAACATCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(17); scores.push_back(32); scores.push_back(33); scores.push_back(19); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(18); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(29); scores.push_back(29); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(19); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(27); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(13); scores.push_back(34); scores.push_back(15); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); read37.setScores(scores); + rfastqReads.push_back(read37); + FastqRead read38; read38.setName("M00967_44_000000000-A3K85_1_1101_10378_5559"); + read38.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(13); read38.setScores(scores); + rfastqReads.push_back(read38); + FastqRead read39; read39.setName("M00967_44_000000000-A3K85_1_1101_22557_5955"); + read39.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCCCTACAGTTTCCAAAGCAGTCCAGGGGTTGGGCCCCCGCCTTTCACTTCAGGCTTGCTCAGCCGTCTACGCTCCCTTTACACCCAGTGATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); read39.setScores(scores); + rfastqReads.push_back(read39); + FastqRead read40; read40.setName("M00967_44_000000000-A3K85_1_1101_17938_6085"); + read40.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); read40.setScores(scores); + rfastqReads.push_back(read40); + FastqRead read41; read41.setName("M00967_44_000000000-A3K85_1_1101_17246_6091"); + read41.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read43.setScores(scores); + rfastqReads.push_back(read43); + FastqRead read44; read44.setName("M00967_44_000000000-A3K85_1_1101_10973_6275"); + read44.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCCTTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCCGGCCGCCTACGCACCCTTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(13); read44.setScores(scores); + rfastqReads.push_back(read44); + FastqRead read45; read45.setName("M00967_44_000000000-A3K85_1_1101_13172_6283"); + read45.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATTTTTCGCCTGCGCAACCTTTAAACCCAATAAATCAGGATAAAGATTGCATACTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(20); scores.push_back(35); scores.push_back(30); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(30); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); read45.setScores(scores); + rfastqReads.push_back(read45); + FastqRead read46; read46.setName("M00967_44_000000000-A3K85_1_1101_10990_6283"); + read46.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCCCACTCGAGCCCGCCCGTTTCAACGGCTGTACGGGGTTGAGCCCCGCCATTTTACCGCTGACTTGGCATGCCGCCTACGCCCCCTTTAAACCCAATAAATCAGGATAACGCCCCCAACCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(13); read46.setScores(scores); + rfastqReads.push_back(read46); + FastqRead read47; read47.setName("M00967_44_000000000-A3K85_1_1101_18756_6332"); + read47.setSeq("CCTGTTCGATACCAACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGTTATCTATGCATTTCACCGCTCCACCCCGCATTCCGCATCCTTCTCGCTCCCTCAAGAAAACCAGTTTCAACGGCTCGAAGGGGTTGGGCCTCTCCATTTTACCCCTGCCTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACCCCCCCACCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(18); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(32); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(14); scores.push_back(30); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(29); scores.push_back(27); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(34); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(27); scores.push_back(15); scores.push_back(35); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(28); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read47.setScores(scores); + rfastqReads.push_back(read47); + FastqRead read48; read48.setName("M00967_44_000000000-A3K85_1_1101_23297_6573"); + read48.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(13); read48.setScores(scores); + rfastqReads.push_back(read48); + FastqRead read49; read49.setName("M00967_44_000000000-A3K85_1_1101_17839_6735"); + read49.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGCGCCCCCACATTTGACTGCTGACTTAACAGCCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(13); read49.setScores(scores); + rfastqReads.push_back(read49); + FastqRead read50; read50.setName("M00967_44_000000000-A3K85_1_1101_22930_6755"); + read50.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCCGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCCCTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); read50.setScores(scores); + rfastqReads.push_back(read50); + FastqRead read51; read51.setName("M00967_44_000000000-A3K85_1_1101_10511_6811"); + read51.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGCAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAACAAATCCGGATAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); read52.setScores(scores); + rfastqReads.push_back(read52); + FastqRead read53; read53.setName("M00967_44_000000000-A3K85_1_1101_6027_7033"); + read53.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCCCCCCAATTTTACCGCTGACTTGCCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCACCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(34); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(12); read53.setScores(scores); + rfastqReads.push_back(read53); + FastqRead read54; read54.setName("M00967_44_000000000-A3K85_1_1101_21920_7059"); + read54.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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+ read55.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAACTTTACCGCTGACTTAACCGACCGCCTACGCACCCCTTTAACCCAATAACTCCGGATAACGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); read55.setScores(scores); + rfastqReads.push_back(read55); + FastqRead read56; read56.setName("M00967_44_000000000-A3K85_1_1101_14128_7160"); + read56.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTTCGCCTGCGCACCCTTTAAAACCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(19); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(34); 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scores.push_back(13); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); read56.setScores(scores); + rfastqReads.push_back(read56); + FastqRead read57; read57.setName("M00967_44_000000000-A3K85_1_1101_4815_7242"); + read57.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCAGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); 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scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); read57.setScores(scores); + rfastqReads.push_back(read57); + FastqRead read58; read58.setName("M00967_44_000000000-A3K85_1_1101_12541_7269"); + read58.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCACGAAAACCAGTTTCAATGGCTCCAAGAGGTTGGGCCTCTCAATTTTCCCGCTGCCTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAAACCGGGAAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(18); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); 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scores.push_back(29); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(28); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(24); read58.setScores(scores); + rfastqReads.push_back(read58); + FastqRead read59; read59.setName("M00967_44_000000000-A3K85_1_1101_9919_7301"); + read59.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(27); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(24); read59.setScores(scores); + rfastqReads.push_back(read59); + FastqRead read60; read60.setName("M00967_44_000000000-A3K85_1_1101_5214_7309"); + read60.setSeq("CCTGTTCGCTACCCACGCTTTCGTGCCTGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGTTGAACCCCGGCAATTGACCGCCGAATTAACAGACCGCCTCCGCACCCTTTAAACCCCATCAATCCGGGTAACCCTCGCCTCCCCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); read60.setScores(scores); + rfastqReads.push_back(read60); + FastqRead read61; read61.setName("M00967_44_000000000-A3K85_1_1101_10336_7408"); + read61.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); 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scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read61.setScores(scores); + rfastqReads.push_back(read61); + FastqRead read62; read62.setName("M00967_44_000000000-A3K85_1_1101_4870_7443"); + read62.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTACATCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); read62.setScores(scores); + rfastqReads.push_back(read62); + FastqRead read63; read63.setName("M00967_44_000000000-A3K85_1_1101_15991_7498"); + read63.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTTCGCCTGCGCACCCTTTAAACCCAATAAATACGGATAAAGCTGGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(33); scores.push_back(19); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); read63.setScores(scores); + rfastqReads.push_back(read63); + FastqRead read64; read64.setName("M00967_44_000000000-A3K85_1_1101_10419_7547"); + read64.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read65.setScores(scores); + rfastqReads.push_back(read65); + FastqRead read66; read66.setName("M00967_44_000000000-A3K85_1_1101_10312_7727"); + read66.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCCCCCTTTCAACCCAATACATCCGGATAAAGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(24); read66.setScores(scores); + rfastqReads.push_back(read66); + FastqRead read67; read67.setName("M00967_44_000000000-A3K85_1_1101_11399_7830"); + read67.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGCGCCCCGCCATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTCAACCCAATAAATCCGGCTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); 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scores.push_back(13); scores.push_back(13); read67.setScores(scores); + rfastqReads.push_back(read67); + FastqRead read68; read68.setName("M00967_44_000000000-A3K85_1_1101_17905_7831"); + read68.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read68.setScores(scores); + rfastqReads.push_back(read68); + FastqRead read69; read69.setName("M00967_44_000000000-A3K85_1_1101_20714_8004"); + read69.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read69.setScores(scores); + rfastqReads.push_back(read69); + FastqRead read70; read70.setName("M00967_44_000000000-A3K85_1_1101_26645_8005"); + read70.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTACACCCAATAAATCCGGATAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); read70.setScores(scores); + rfastqReads.push_back(read70); + FastqRead read71; read71.setName("M00967_44_000000000-A3K85_1_1101_26632_8017"); + read71.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCCCAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); read71.setScores(scores); + rfastqReads.push_back(read71); + FastqRead read72; read72.setName("M00967_44_000000000-A3K85_1_1101_22157_8061"); + read72.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCCCTCCGACACTCTAGTCCGGCAGTTTCCAATGCAGTACCAGGGTTGAGCCCTGGGCTTTCACATCAGACTTGCCGTACCGCCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCACCATACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(35); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); read72.setScores(scores); + rfastqReads.push_back(read72); + FastqRead read73; read73.setName("M00967_44_000000000-A3K85_1_1101_13719_8076"); + read73.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(33); 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scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(35); scores.push_back(15); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(13); read73.setScores(scores); + rfastqReads.push_back(read73); + FastqRead read74; read74.setName("M00967_44_000000000-A3K85_1_1101_15650_8190"); + read74.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGGGGGGGTGGGCCCCGCAAATTTACAGCGGACTTGGGATCACGCCGGGGGAGCCTTTAAAACCAAAAAATTAGGGTAAAAATTGCTACTC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); read74.setScores(scores); + rfastqReads.push_back(read74); + FastqRead read75; read75.setName("M00967_44_000000000-A3K85_1_1101_12248_8236"); + read75.setSeq("CCCGTTTGCTCCCTACGCTTTCGTGCCTTAGTGTCAGAACCGTCCCAGTAACCTGCCTACGCTATCGGTGTTCCTTCTAATATCTACGGATTTCACTCCTACACTAGAAATTCCAGTTACCCCTAACGGTCTCGAGCTTAGCAGTTTAGCTAATAGTCTGAATGGTTGAGCCACCAGATTTCACTAGCTACTTACTATGCCACCTACGCAACTCTTTACACCCAGTCACTCCGGATAATGCTCGGATCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); read75.setScores(scores); + rfastqReads.push_back(read75); + FastqRead read76; read76.setName("M00967_44_000000000-A3K85_1_1101_18646_8324"); + read76.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read76.setScores(scores); + rfastqReads.push_back(read76); + FastqRead read77; read77.setName("M00967_44_000000000-A3K85_1_1101_10827_8327"); + read77.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTGACCGCTGCCTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); 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scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); read78.setScores(scores); + rfastqReads.push_back(read78); + FastqRead read79; read79.setName("M00967_44_000000000-A3K85_1_1101_19501_8358"); + read79.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read79.setScores(scores); + rfastqReads.push_back(read79); + FastqRead read80; read80.setName("M00967_44_000000000-A3K85_1_1101_4368_8424"); + read80.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGTACCCCCCAAATTTACCGCTTGCCTTATCTTTCCCCCGCGCACCCCTTAAACCCCATAAAACCCGGAAAACCCCCCCTCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read80.setScores(scores); + rfastqReads.push_back(read80); + FastqRead read81; read81.setName("M00967_44_000000000-A3K85_1_1101_12165_8481"); + read81.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTTCGCCTGCGCAACCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(26); read81.setScores(scores); + rfastqReads.push_back(read81); + FastqRead read82; read82.setName("M00967_44_000000000-A3K85_1_1101_19660_8492"); + read82.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCCCCTGCGCACCCTTTCAACCCAATAAATCCGGATAACGCCCGCCTCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read82.setScores(scores); + rfastqReads.push_back(read82); + FastqRead read83; read83.setName("M00967_44_000000000-A3K85_1_1101_12259_8527"); + read83.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); read83.setScores(scores); + rfastqReads.push_back(read83); + FastqRead read84; read84.setName("M00967_44_000000000-A3K85_1_1101_21543_8616"); + read84.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read84.setScores(scores); + rfastqReads.push_back(read84); + FastqRead read85; read85.setName("M00967_44_000000000-A3K85_1_1101_14268_8617"); + read85.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); read85.setScores(scores); + rfastqReads.push_back(read85); + FastqRead read86; read86.setName("M00967_44_000000000-A3K85_1_1101_7231_8621"); + read86.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGCCCTACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCATCGCCGCCTACGCTCCCTTTACACCCAGTCAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); read86.setScores(scores); + rfastqReads.push_back(read86); + FastqRead read87; read87.setName("M00967_44_000000000-A3K85_1_1101_19754_8653"); + read87.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAAGGGGTGAGCCCCCCACATTTACCACTTACTTAACGATCCGCCCACGCCCCCCTTTAACCCAATAAAACCGGGTAACGCCCCCCTCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read87.setScores(scores); + rfastqReads.push_back(read87); + FastqRead read88; read88.setName("M00967_44_000000000-A3K85_1_1101_13364_8671"); + read88.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(31); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); read88.setScores(scores); + rfastqReads.push_back(read88); + FastqRead read89; read89.setName("M00967_44_000000000-A3K85_1_1101_11138_8749"); + read89.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read89.setScores(scores); + rfastqReads.push_back(read89); + FastqRead read90; read90.setName("M00967_44_000000000-A3K85_1_1101_21574_8754"); + read90.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(36); 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scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); read90.setScores(scores); + rfastqReads.push_back(read90); + FastqRead read91; read91.setName("M00967_44_000000000-A3K85_1_1101_15243_8862"); + read91.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGGAACCTTTAAAACCAATAAATCCGGATAAAGGTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(26); read91.setScores(scores); + rfastqReads.push_back(read91); + FastqRead read92; read92.setName("M00967_44_000000000-A3K85_1_1101_6881_8899"); + read92.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTCCACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); read92.setScores(scores); + rfastqReads.push_back(read92); + FastqRead read93; read93.setName("M00967_44_000000000-A3K85_1_1101_5965_8984"); + read93.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); read93.setScores(scores); + rfastqReads.push_back(read93); + FastqRead read94; read94.setName("M00967_44_000000000-A3K85_1_1101_12421_8991"); + read94.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCCGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(26); read94.setScores(scores); + rfastqReads.push_back(read94); + FastqRead read95; read95.setName("M00967_44_000000000-A3K85_1_1101_16416_9000"); + read95.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(19); scores.push_back(32); scores.push_back(19); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); 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scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); read95.setScores(scores); + rfastqReads.push_back(read95); + FastqRead read96; read96.setName("M00967_44_000000000-A3K85_1_1101_5471_9031"); + read96.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAAAGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read97.setScores(scores); + rfastqReads.push_back(read97); + FastqRead read98; read98.setName("M00967_44_000000000-A3K85_1_1101_13579_9062"); + read98.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); read98.setScores(scores); + rfastqReads.push_back(read98); + FastqRead read99; read99.setName("M00967_44_000000000-A3K85_1_1101_8534_9075"); + read99.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); read99.setScores(scores); + rfastqReads.push_back(read99); + FastqRead read100; read100.setName("M00967_44_000000000-A3K85_1_1101_24265_9168"); + read100.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(13); read100.setScores(scores); + rfastqReads.push_back(read100); + FastqRead read101; read101.setName("M00967_44_000000000-A3K85_1_1101_24708_9299"); + read101.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read101.setScores(scores); + rfastqReads.push_back(read101); + FastqRead read102; read102.setName("M00967_44_000000000-A3K85_1_1101_12689_9330"); + read102.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read102.setScores(scores); + rfastqReads.push_back(read102); + FastqRead read103; read103.setName("M00967_44_000000000-A3K85_1_1101_27735_9353"); + read103.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(13); read103.setScores(scores); + rfastqReads.push_back(read103); + FastqRead read104; read104.setName("M00967_44_000000000-A3K85_1_1101_19351_9374"); + read104.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGTTGTGCCTCCCACATTTTACTCTGCCTTAAACGTCCGCCCCCGCACCCCTTAAAAACAATAAAAACCTAAAAAACCCGCCCCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); read104.setScores(scores); + rfastqReads.push_back(read104); + FastqRead read105; read105.setName("M00967_44_000000000-A3K85_1_1101_13561_9427"); + read105.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGGGCCCCTCAAATTTAACACTTAATTTAACATTCCACTTCCGATCCTTTTAAACCCATAAATACCGAATAAGCTCGCGATCTTC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(18); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(26); read105.setScores(scores); + rfastqReads.push_back(read105); + FastqRead read106; read106.setName("M00967_44_000000000-A3K85_1_1101_8736_9452"); + read106.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCGACGGCAGGTCGGGGTTGAGCCCCGAAATTTGACCGCTGACTTGGCATCCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(32); scores.push_back(35); scores.push_back(30); read107.setScores(scores); + rfastqReads.push_back(read107); + FastqRead read108; read108.setName("M00967_44_000000000-A3K85_1_1101_14330_9726"); + read108.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGGGGGGTTGGGCCCCGGAAATTTACAGGTTAATTGGGATTCCGGCTGGGGACCCTTTTAAACCAATAAATATGGATAAAGGTCGCATCCTTCGT"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); read108.setScores(scores); + rfastqReads.push_back(read108); + FastqRead read109; read109.setName("M00967_44_000000000-A3K85_1_1101_10994_9747"); + read109.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGCCGGGGTTGGGCCCCCCAACTTTCCCGCCTACTTTGCACCCCGCCCGCGCACCCCTTCACCCCCACCAAACCCGAAAACCCCCGCACCCCACC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(19); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(20); 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scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); read109.setScores(scores); + rfastqReads.push_back(read109); + FastqRead read110; read110.setName("M00967_44_000000000-A3K85_1_1101_3255_9762"); + read110.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAACCGTTCCGCGGTTAAGCCACCGGCTTTCACTTCAGACTTGCAGAACCGTCGACGCTCCCTTTACACCCAGTAAATCCGGCTCACACCCGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(37); 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scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); read110.setScores(scores); + rfastqReads.push_back(read110); + FastqRead read111; read111.setName("M00967_44_000000000-A3K85_1_1101_21004_9829"); + read111.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); read111.setScores(scores); + rfastqReads.push_back(read111); + FastqRead read112; read112.setName("M00967_44_000000000-A3K85_1_1101_27704_9939"); + read112.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTGGGCCCCCCCATTTGACCCCTGACTTTACGAGCCGCCGCACCACCCCTTTAACCCCATAAAACCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); read112.setScores(scores); + rfastqReads.push_back(read112); + FastqRead read113; read113.setName("M00967_44_000000000-A3K85_1_1101_21801_9940"); + read113.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(28); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); read113.setScores(scores); + rfastqReads.push_back(read113); + FastqRead read114; read114.setName("M00967_44_000000000-A3K85_1_1101_14593_9947"); + read114.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCATGGCAGTTTCCAAAGCAGTTCAGGGGTTAAGCCCCTGCCTTTCACTTCAGACTTGCCGCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(31); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(15); scores.push_back(32); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(28); scores.push_back(31); scores.push_back(36); scores.push_back(32); scores.push_back(35); read114.setScores(scores); + rfastqReads.push_back(read114); + FastqRead read115; read115.setName("M00967_44_000000000-A3K85_1_1101_21550_10040"); + read115.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGTGAGTCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTCACCTCTCCTGCACTCCAGCTTACCAGTTTTAGATGCAGTTCCGCGGTTAAGCCGCGGGATTTCACATCTAACTTGATGAGCCGCCTACACTCCCTTTACGCCCAGTCATTCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(36); scores.push_back(13); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(13); read115.setScores(scores); + rfastqReads.push_back(read115); + FastqRead read116; read116.setName("M00967_44_000000000-A3K85_1_1101_21278_10112"); + read116.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCGCGCAGTTCCAAGAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTCCTGGCTTGCGCTGCCGTCTGCGCCCCCTTTACACCCACTAAATCCGGATACAGCCTGCCCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); read116.setScores(scores); + rfastqReads.push_back(read116); + FastqRead read117; read117.setName("M00967_44_000000000-A3K85_1_1101_19330_10126"); + read117.setSeq("CCTGTTTGATACCCACACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read117.setScores(scores); + rfastqReads.push_back(read117); + FastqRead read118; read118.setName("M00967_44_000000000-A3K85_1_1101_9255_10164"); + read118.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCGCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); read118.setScores(scores); + rfastqReads.push_back(read118); + FastqRead read119; read119.setName("M00967_44_000000000-A3K85_1_1101_4387_10169"); + read119.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); 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scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(25); read119.setScores(scores); + rfastqReads.push_back(read119); + FastqRead read120; read120.setName("M00967_44_000000000-A3K85_1_1101_6605_10173"); + read120.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACCCCAGTTTCAAAGGCTCGACGGCGTTGAGCCCCGCTTTTTTCCCGCCGAATTGGCAACCCCCCCACCGACCCCTTTAACCCAATAAAATCGGTAAAACCCCGCCTCCCCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read120.setScores(scores); + rfastqReads.push_back(read120); + FastqRead read121; read121.setName("M00967_44_000000000-A3K85_1_1101_6954_10206"); + read121.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGAGGAACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); read121.setScores(scores); + rfastqReads.push_back(read121); + FastqRead read122; read122.setName("M00967_44_000000000-A3K85_1_1101_7527_10303"); + read122.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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read123.setName("M00967_44_000000000-A3K85_1_1101_24337_10344"); + read123.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(13); read123.setScores(scores); + rfastqReads.push_back(read123); + FastqRead read124; read124.setName("M00967_44_000000000-A3K85_1_1101_22387_10347"); + read124.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTAGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(33); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); read124.setScores(scores); + rfastqReads.push_back(read124); + FastqRead read125; read125.setName("M00967_44_000000000-A3K85_1_1101_18889_10362"); + read125.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read125.setScores(scores); + rfastqReads.push_back(read125); + FastqRead read126; read126.setName("M00967_44_000000000-A3K85_1_1101_18780_10395"); + read126.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGGGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(12); read126.setScores(scores); + rfastqReads.push_back(read126); + FastqRead read127; read127.setName("M00967_44_000000000-A3K85_1_1101_16939_10517"); + read127.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGCCTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read127.setScores(scores); + rfastqReads.push_back(read127); + FastqRead read128; read128.setName("M00967_44_000000000-A3K85_1_1101_26512_10524"); + read128.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(25); read128.setScores(scores); + rfastqReads.push_back(read128); + FastqRead read129; read129.setName("M00967_44_000000000-A3K85_1_1101_26835_10541"); + read129.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(13); read129.setScores(scores); + rfastqReads.push_back(read129); + FastqRead read130; read130.setName("M00967_44_000000000-A3K85_1_1101_25040_10597"); + read130.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(17); scores.push_back(19); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(34); 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scores.push_back(27); scores.push_back(29); scores.push_back(15); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(28); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); read130.setScores(scores); + rfastqReads.push_back(read130); + FastqRead read131; read131.setName("M00967_44_000000000-A3K85_1_1101_22851_10787"); + read131.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read131.setScores(scores); + rfastqReads.push_back(read131); + FastqRead read132; read132.setName("M00967_44_000000000-A3K85_1_1101_16735_10948"); + read132.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCGGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCCCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCCGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTACATCCGGATAACGCTTGACCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(14); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); read134.setScores(scores); + rfastqReads.push_back(read134); + FastqRead read135; read135.setName("M00967_44_000000000-A3K85_1_1101_13511_11032"); + read135.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTAGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGGCGGGGTTGGGGCCCGACAATTGACCGCTGAATTTACAGGACGCCTTAGCACCCTTTTAAACCAATTAATTCGGGATACGGTCGCATACTCCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(17); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(38); 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scores.push_back(13); read135.setScores(scores); + rfastqReads.push_back(read135); + FastqRead read136; read136.setName("M00967_44_000000000-A3K85_1_1101_27264_11056"); + read136.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGTTGAGCCCCTCAATTTTTCAGCTCACTTAACTTTCCGCCCCCGCCCCCTTTCAACCCAAAAAATCCCGAAAAACCACCCCTCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); 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scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); read136.setScores(scores); + rfastqReads.push_back(read136); + FastqRead read137; read137.setName("M00967_44_000000000-A3K85_1_1101_17213_11062"); + read137.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); read137.setScores(scores); + rfastqReads.push_back(read137); + FastqRead read138; read138.setName("M00967_44_000000000-A3K85_1_1101_18943_11082"); + read138.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTCCACAGTTTCCAAAGCAGTCCCAGGGTTGAGCCCTGGGCTTTCACTTCAGACTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read138.setScores(scores); + rfastqReads.push_back(read138); + FastqRead read139; read139.setName("M00967_44_000000000-A3K85_1_1101_17868_11113"); + read139.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read139.setScores(scores); + rfastqReads.push_back(read139); + FastqRead read140; read140.setName("M00967_44_000000000-A3K85_1_1101_21158_11161"); + read140.setSeq("CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACAAACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); read140.setScores(scores); + rfastqReads.push_back(read140); + FastqRead read141; read141.setName("M00967_44_000000000-A3K85_1_1101_14735_11235"); + read141.setSeq("CATGTTCGATACCAGCACTTTCGTGCCTCAGCGTCAGTAGGGTGTCGGAAGGCTGCCTTCGCAATCGGGGTTCTGAGTGATATCTATGCATTTGACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCATTCAAGGCCGCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGATGACTTAAAAGCACGCCTACGCACCCTTTAAATCCAATAAATCAGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(29); scores.push_back(29); scores.push_back(33); scores.push_back(16); 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scores.push_back(31); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); read141.setScores(scores); + rfastqReads.push_back(read141); + FastqRead read142; read142.setName("M00967_44_000000000-A3K85_1_1101_16074_11244"); + read142.setSeq("CCTGTTTGATACCAACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTTACCGCTACACCACGAATTCCGCCCAACTCTACTGTATTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGAATTAACAATCTACCTATGATCACTTTAAACCCAATAAATCCGGATAAAGCTAGGATCATCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(33); 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scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(12); read142.setScores(scores); + rfastqReads.push_back(read142); + FastqRead read143; read143.setName("M00967_44_000000000-A3K85_1_1101_7593_11252"); + read143.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(24); read143.setScores(scores); + rfastqReads.push_back(read143); + FastqRead read144; read144.setName("M00967_44_000000000-A3K85_1_1101_12857_11252"); + read144.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTAATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(27); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(27); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); read144.setScores(scores); + rfastqReads.push_back(read144); + FastqRead read145; read145.setName("M00967_44_000000000-A3K85_1_1101_15147_11308"); + read145.setSeq("CCTGTTTGCTCCCCAAGCTTTCGCGAATCAGGGTCAGTTACTGTCCAGCAATACGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGAATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCAACATACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(18); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(16); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(33); 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scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read146.setScores(scores); + rfastqReads.push_back(read146); + FastqRead read147; read147.setName("M00967_44_000000000-A3K85_1_1101_16136_11420"); + read147.setSeq("CCTATTTGATCCCCGCACTTGCGTGCCACAGCGGCAGTAGGGCGCCTGAATGCCGCCCTCGCCATCGTGGTTTGGCGTGATATGTAGGTATTTTGCGGTTATAAAAGGGATTTGGGATAGTTATTATCAATTAGAGAGTGGCAGTTTGAATGGCTGTAAGGGGTTGTGCACCGGAATTTGACAGATGACTAGGAAGGGTGGGGGTGGAAGATTTACAGGTATTAGTGATTGGTAAGGAGGGCATCAGGAGA"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(18); scores.push_back(31); scores.push_back(18); 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scores.push_back(38); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); read147.setScores(scores); + rfastqReads.push_back(read147); + FastqRead read148; read148.setName("M00967_44_000000000-A3K85_1_1101_13333_11429"); + read148.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGAAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAAAGCTTGGCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(35); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(28); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); read148.setScores(scores); + rfastqReads.push_back(read148); + FastqRead read149; read149.setName("M00967_44_000000000-A3K85_1_1101_10743_11432"); + read149.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); read149.setScores(scores); + rfastqReads.push_back(read149); + FastqRead read150; read150.setName("M00967_44_000000000-A3K85_1_1101_28944_11444"); + read150.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); read150.setScores(scores); + rfastqReads.push_back(read150); + FastqRead read151; read151.setName("M00967_44_000000000-A3K85_1_1101_20676_11509"); + read151.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCACGGTCCAGTAAGCCGCCTTCGCCGCTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCCGCACTCCAGCCGGGCAGTTTCCAGAGCGGTCCCGGGGTTGGGCCCCGGCCTTTCACTCCAGACTTGCCCCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read151.setScores(scores); + rfastqReads.push_back(read151); + FastqRead read152; read152.setName("M00967_44_000000000-A3K85_1_1101_17571_11522"); + read152.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACACAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); read152.setScores(scores); + rfastqReads.push_back(read152); + FastqRead read153; read153.setName("M00967_44_000000000-A3K85_1_1101_14976_11522"); + read153.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTACTTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read153.setScores(scores); + rfastqReads.push_back(read153); + FastqRead read154; read154.setName("M00967_44_000000000-A3K85_1_1101_17702_11563"); + read154.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); read154.setScores(scores); + rfastqReads.push_back(read154); + FastqRead read155; read155.setName("M00967_44_000000000-A3K85_1_1101_9426_11659"); + read155.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGGGCCCCGCAAATTTACCCCTGCATTGGGATCCCCCCCCCGCCCCCCTCTAACCCACAAAAACCCGATAACCCCCCCACCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); read155.setScores(scores); + rfastqReads.push_back(read155); + FastqRead read156; read156.setName("M00967_44_000000000-A3K85_1_1101_20183_11662"); + read156.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGACAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTGTCCTCTTCTGCACTCAAGTCGCCCGGTTTCCGATGCACTTCTTCGGTTAAGCCGAAGGCTTTCACATCAGACCTAAGCAACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); read156.setScores(scores); + rfastqReads.push_back(read156); + FastqRead read157; read157.setName("M00967_44_000000000-A3K85_1_1101_6200_11675"); + read157.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGCCTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGCTAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); read157.setScores(scores); + rfastqReads.push_back(read157); + FastqRead read158; read158.setName("M00967_44_000000000-A3K85_1_1101_23383_11740"); + read158.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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+ scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); read160.setScores(scores); + rfastqReads.push_back(read160); + FastqRead read161; read161.setName("M00967_44_000000000-A3K85_1_1101_19628_11889"); + read161.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTACACCCAATAAATCCGGATAACGCCCGCATCCCCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read162.setScores(scores); + rfastqReads.push_back(read162); + FastqRead read163; read163.setName("M00967_44_000000000-A3K85_1_1101_13005_11931"); + read163.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCGGATAACGCCCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(34); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(25); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read163.setScores(scores); + rfastqReads.push_back(read163); + FastqRead read164; read164.setName("M00967_44_000000000-A3K85_1_1101_6379_11957"); + read164.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACTGCGTTTAGCACCGCATTTTTACCGCTGACTTTGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); read164.setScores(scores); + rfastqReads.push_back(read164); + FastqRead read165; read165.setName("M00967_44_000000000-A3K85_1_1101_7746_12226"); + read165.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read165.setScores(scores); + rfastqReads.push_back(read165); + FastqRead read166; read166.setName("M00967_44_000000000-A3K85_1_1101_8486_12249"); + read166.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATATTCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read166.setScores(scores); + rfastqReads.push_back(read166); + FastqRead read167; read167.setName("M00967_44_000000000-A3K85_1_1101_12335_12280"); + read167.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGCAGCGGGTGGGCCCCCCAATTTTTACCCTCCCTTAACCGTCCGCCCCCCCCCCCCTTAAACCCCATAAAACCCGGTAAACCCCGCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read167.setScores(scores); + rfastqReads.push_back(read167); + FastqRead read168; read168.setName("M00967_44_000000000-A3K85_1_1101_6614_12305"); + read168.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); 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scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(13); read168.setScores(scores); + rfastqReads.push_back(read168); + FastqRead read169; read169.setName("M00967_44_000000000-A3K85_1_1101_9990_12312"); + read169.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGGCATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(26); read169.setScores(scores); + rfastqReads.push_back(read169); + FastqRead read170; read170.setName("M00967_44_000000000-A3K85_1_1101_8387_12354"); + read170.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTTCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(28); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read170.setScores(scores); + rfastqReads.push_back(read170); + FastqRead read171; read171.setName("M00967_44_000000000-A3K85_1_1101_6344_12374"); + read171.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTTACCGCTGACTTAACAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); read172.setScores(scores); + rfastqReads.push_back(read172); + FastqRead read173; read173.setName("M00967_44_000000000-A3K85_1_1101_25548_12592"); + read173.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); read173.setScores(scores); + rfastqReads.push_back(read173); + FastqRead read174; read174.setName("M00967_44_000000000-A3K85_1_1101_20296_12613"); + read174.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTTGGCCGCCTTCGCCACCGGTGTTCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCGCCAACCTCTACTTCACTCAAGAAAGCCAGTTTCAACTGCAGTCTACAGGTTAAGCCCGTAGTTTTCACAGCTGACTTGGCTTCCCGCCTACCCTCCCTTTCCACCCAGTAATTCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); read175.setScores(scores); + rfastqReads.push_back(read175); + FastqRead read176; read176.setName("M00967_44_000000000-A3K85_1_1101_11361_12648"); + read176.setSeq("CCCGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(25); read176.setScores(scores); + rfastqReads.push_back(read176); + FastqRead read177; read177.setName("M00967_44_000000000-A3K85_1_1101_18054_12652"); + read177.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read177.setScores(scores); + rfastqReads.push_back(read177); + FastqRead read178; read178.setName("M00967_44_000000000-A3K85_1_1101_25239_12770"); + read178.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGGGCCCCCCAAATTGACCGCTGACTTGGCATCCCCCCTGCGCACCCCTTAAAACCAAAAAAACAGGGTCAGGCTAGCCACCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); read178.setScores(scores); + rfastqReads.push_back(read178); + FastqRead read179; read179.setName("M00967_44_000000000-A3K85_1_1101_24418_12852"); + read179.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCCATAAATCCGGAAAACCCCCCCCTCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); read179.setScores(scores); + rfastqReads.push_back(read179); + FastqRead read180; read180.setName("M00967_44_000000000-A3K85_1_1101_29053_12897"); + read180.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGGAGGGGGTGGGGCCCCCCCTTTTGCCACATGCTTTAAGAACCGCCGACGCCCCCCTTCAAACCAAAAAATACGGAGACAACCTCCCAACACCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); read180.setScores(scores); + rfastqReads.push_back(read180); + FastqRead read181; read181.setName("M00967_44_000000000-A3K85_1_1101_13344_12926"); + read181.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCGAAATTTGACCGCTGACTTGGCCTCCCGCCTGCGCACCCTTTTAACCCAAAAAATCCCGATAAAGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); 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scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(24); read181.setScores(scores); + rfastqReads.push_back(read181); + FastqRead read182; read182.setName("M00967_44_000000000-A3K85_1_1101_5805_12965"); + read182.setSeq("CCTGCTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); read182.setScores(scores); + rfastqReads.push_back(read182); + FastqRead read183; read183.setName("M00967_44_000000000-A3K85_1_1101_24501_12971"); + read183.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); read183.setScores(scores); + rfastqReads.push_back(read183); + FastqRead read184; read184.setName("M00967_44_000000000-A3K85_1_1101_22908_13029"); + read184.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGAAGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGACCATCAGTTTCAATGGCGGGAAAAGGTTGTGCCCCCCCAATTTTCCCCTGCCTTTACTGTCCGCCCAAGCCCCCCTTAAACCCAATAAAAACGGATAAAACACGCACCCACCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(19); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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+ read185.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read185.setScores(scores); + rfastqReads.push_back(read185); + FastqRead read186; read186.setName("M00967_44_000000000-A3K85_1_1101_10678_13072"); + read186.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGTAAACGCTGGCCCCCCACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); read186.setScores(scores); + rfastqReads.push_back(read186); + FastqRead read187; read187.setName("M00967_44_000000000-A3K85_1_1101_20324_13084"); + read187.setSeq("CCTGTTTGATCCCCGCACTTTCGCGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read189.setScores(scores); + rfastqReads.push_back(read189); + FastqRead read190; read190.setName("M00967_44_000000000-A3K85_1_1101_27846_13162"); + read190.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); read190.setScores(scores); + rfastqReads.push_back(read190); + FastqRead read191; read191.setName("M00967_44_000000000-A3K85_1_1101_7557_13169"); + read191.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); 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scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(24); read191.setScores(scores); + rfastqReads.push_back(read191); + FastqRead read192; read192.setName("M00967_44_000000000-A3K85_1_1101_16324_13252"); + read192.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read192.setScores(scores); + rfastqReads.push_back(read192); + FastqRead read193; read193.setName("M00967_44_000000000-A3K85_1_1101_15104_13261"); + read193.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read193.setScores(scores); + rfastqReads.push_back(read193); + FastqRead read194; read194.setName("M00967_44_000000000-A3K85_1_1101_15954_13322"); + read194.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATACGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(13); read194.setScores(scores); + rfastqReads.push_back(read194); + FastqRead read195; read195.setName("M00967_44_000000000-A3K85_1_1101_25760_13415"); + read195.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTGAGCCCCCCCATTTGTCCCCTTACTTAAAGATCCGCCCACGCACCCCTTTAAACCAAAAAAAACCGATAACGCTCCCCTCCACCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); read195.setScores(scores); + rfastqReads.push_back(read195); + FastqRead read196; read196.setName("M00967_44_000000000-A3K85_1_1101_25887_13447"); + read196.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); read196.setScores(scores); + rfastqReads.push_back(read196); + FastqRead read197; read197.setName("M00967_44_000000000-A3K85_1_1101_27540_13512"); + read197.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(13); read197.setScores(scores); + rfastqReads.push_back(read197); + FastqRead read198; read198.setName("M00967_44_000000000-A3K85_1_1101_5431_13518"); + read198.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read198.setScores(scores); + rfastqReads.push_back(read198); + FastqRead read199; read199.setName("M00967_44_000000000-A3K85_1_1101_13397_13589"); + read199.setSeq("CCTGTTCGATACCCACGCTTTCGAGCCTCAACGTCAGTCGCGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCCATGCAGTTCCAAGGGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACCCCTGGCTTGCTTGGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(13); read199.setScores(scores); + rfastqReads.push_back(read199); + FastqRead read200; read200.setName("M00967_44_000000000-A3K85_1_1101_6168_13598"); + read200.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGAATTGATCTTCCGCCTTCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); 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scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); read202.setScores(scores); + rfastqReads.push_back(read202); + FastqRead read203; read203.setName("M00967_44_000000000-A3K85_1_1101_6168_13708"); + read203.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCATCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read203.setScores(scores); + rfastqReads.push_back(read203); + FastqRead read204; read204.setName("M00967_44_000000000-A3K85_1_1101_9620_13721"); + read204.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCTTTACAGTTTCCAGAGCAGTCCCAGGGTTGAGCCCCGGGCTTTCACTCCGGACTTGCACTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(13); read204.setScores(scores); + rfastqReads.push_back(read204); + FastqRead read205; read205.setName("M00967_44_000000000-A3K85_1_1101_25732_13726"); + read205.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCCAGCTACACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCACAGCCGTCTACGCCCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(13); read205.setScores(scores); + rfastqReads.push_back(read205); + FastqRead read206; read206.setName("M00967_44_000000000-A3K85_1_1101_12443_13774"); + read206.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCTTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCAAGCCCTACAGTTTCAAAAGCAGTTCACGGGTTAAGCCCATGGATTTCACTTCTGACTTGCAAGGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read206.setScores(scores); + rfastqReads.push_back(read206); + FastqRead read207; read207.setName("M00967_44_000000000-A3K85_1_1101_3245_13775"); + read207.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read207.setScores(scores); + rfastqReads.push_back(read207); + FastqRead read208; read208.setName("M00967_44_000000000-A3K85_1_1101_26752_13849"); + read208.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read208.setScores(scores); + rfastqReads.push_back(read208); + FastqRead read209; read209.setName("M00967_44_000000000-A3K85_1_1101_23338_13856"); + read209.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGCCTACGCCCCCTTTACCCCCAGTAAATCCGGATAACGCCTGCCCCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); read209.setScores(scores); + rfastqReads.push_back(read209); + FastqRead read210; read210.setName("M00967_44_000000000-A3K85_1_1101_6877_13878"); + read210.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read210.setScores(scores); + rfastqReads.push_back(read210); + FastqRead read211; read211.setName("M00967_44_000000000-A3K85_1_1101_17415_13881"); + read211.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read211.setScores(scores); + rfastqReads.push_back(read211); + FastqRead read212; read212.setName("M00967_44_000000000-A3K85_1_1101_12676_13910"); + read212.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); read212.setScores(scores); + rfastqReads.push_back(read212); + FastqRead read213; read213.setName("M00967_44_000000000-A3K85_1_1101_4369_13960"); + read213.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTAAGTCACCGTCCAGTAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTACCCCTCCGGCACTCCAGCGCGCCAGTTCCCAATGCAGTCCCGCGGTTGGGCCGCGGGCTTTCACACCAGGCTTAACGCGCCGCCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCACCATACG"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(15); scores.push_back(37); 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scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); read214.setScores(scores); + rfastqReads.push_back(read214); + FastqRead read215; read215.setName("M00967_44_000000000-A3K85_1_1101_15349_14079"); + read215.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAACGGCAGTTTAGAACGCAGCCACCGGTTGAGCCGATGGATTTAACATTCTACTTGCCATCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read215.setScores(scores); + rfastqReads.push_back(read215); + FastqRead read216; read216.setName("M00967_44_000000000-A3K85_1_1101_12064_14092"); + read216.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); read216.setScores(scores); + rfastqReads.push_back(read216); + FastqRead read217; read217.setName("M00967_44_000000000-A3K85_1_1101_25584_14106"); + read217.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGCCTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(31); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(32); read217.setScores(scores); + rfastqReads.push_back(read217); + FastqRead read218; read218.setName("M00967_44_000000000-A3K85_1_1101_13797_14123"); + read218.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read218.setScores(scores); + rfastqReads.push_back(read218); + FastqRead read219; read219.setName("M00967_44_000000000-A3K85_1_1101_18719_14234"); + read219.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCCTTAAACCCCATAAATCCCGATAAAGCCCGCATCCCCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(36); 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scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(29); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read219.setScores(scores); + rfastqReads.push_back(read219); + FastqRead read220; read220.setName("M00967_44_000000000-A3K85_1_1101_23141_14276"); + read220.setSeq("CCTGTTTGCTCCCCACGCTCTCGAGCCTCAACGTCAGTCACGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGTACTCCAGCGGCGCAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTCAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(13); read220.setScores(scores); + rfastqReads.push_back(read220); + FastqRead read221; read221.setName("M00967_44_000000000-A3K85_1_1101_3207_14327"); + read221.setSeq("CCTGTTTGATCCCCGCACTTTCGTGACTCAGCGTCAGAAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTATCGACCACTCGAGCCCGGCAGGTTCAACGGCTGTAAGGGGTTGAGCACCGCACTTTTACCGCTGACTTGGGCGGGCGCCTAAGGCTCATTTCAACCCACGAAATCCGGGTACAGCCAGCCCCCTCCGA"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(18); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(14); 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scores.push_back(27); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read221.setScores(scores); + rfastqReads.push_back(read221); + FastqRead read222; read222.setName("M00967_44_000000000-A3K85_1_1101_19536_14328"); + read222.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGGTGAGCCCCCACATTTGACCGCTGACTTTACAGCCCGCCTCCGCCCCCCTTAAACCCAATAAATTCGGGTAACCCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read222.setScores(scores); + rfastqReads.push_back(read222); + FastqRead read223; read223.setName("M00967_44_000000000-A3K85_1_1101_28233_14330"); + read223.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read224.setScores(scores); + rfastqReads.push_back(read224); + FastqRead read225; read225.setName("M00967_44_000000000-A3K85_1_1101_9124_14409"); + read225.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); read225.setScores(scores); + rfastqReads.push_back(read225); + FastqRead read226; read226.setName("M00967_44_000000000-A3K85_1_1101_8204_14433"); + read226.setSeq("CCTGCTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGCCTCGACGGCTTTGCGCACCGCAATTTTACCGCTGACATGGCCTCCCGCCTACGCACCCTTTAAACCCATCAACCTCGGAGAACCCCCGCCTCCCCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(15); 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+ read227.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGACGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read227.setScores(scores); + rfastqReads.push_back(read227); + FastqRead read228; read228.setName("M00967_44_000000000-A3K85_1_1101_21646_14523"); + read228.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGCGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCCCCTGCGCACCCTTTAAACCCCATAAATTCCGATAACGCCCGCATCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); 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scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read228.setScores(scores); + rfastqReads.push_back(read228); + FastqRead read229; read229.setName("M00967_44_000000000-A3K85_1_1101_26579_14596"); + read229.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read230.setScores(scores); + rfastqReads.push_back(read230); + FastqRead read231; read231.setName("M00967_44_000000000-A3K85_1_1101_10711_14688"); + read231.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(28); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read231.setScores(scores); + rfastqReads.push_back(read231); + FastqRead read232; read232.setName("M00967_44_000000000-A3K85_1_1101_10629_14705"); + read232.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); read232.setScores(scores); + rfastqReads.push_back(read232); + FastqRead read233; read233.setName("M00967_44_000000000-A3K85_1_1101_8911_14708"); + read233.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTCCGCTCCCTTTACACCCAGTACATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(36); 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scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); read233.setScores(scores); + rfastqReads.push_back(read233); + FastqRead read234; read234.setName("M00967_44_000000000-A3K85_1_1101_16505_14721"); + read234.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCTTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCCAGCCCTACAGTTTCAAAAGCAGTTCACGGGTTAAGCCCCTGGATTTCACTTCTGACTTGCAAGGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(13); read234.setScores(scores); + rfastqReads.push_back(read234); + FastqRead read235; read235.setName("M00967_44_000000000-A3K85_1_1101_24070_14783"); + read235.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACCATCAGTTTCAACGGCGGGGAGGGGTTGAGCCCCCCCATTTTACCGCTGACTTTACTGTCCGCCTCCCCCCCCTTTTAAACCACTAAAACCCGCTAAAACTCGCACCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); read235.setScores(scores); + rfastqReads.push_back(read235); + FastqRead read236; read236.setName("M00967_44_000000000-A3K85_1_1101_16563_14931"); + read236.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGCTAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(18); scores.push_back(32); 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scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(32); 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scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); read238.setScores(scores); + rfastqReads.push_back(read238); + FastqRead read239; read239.setName("M00967_44_000000000-A3K85_1_1101_11356_15017"); + read239.setSeq("CCTGTTCGATACCCACACTTTCGTGCATCAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGACCACCAGTTTCAACGGCTCGCCGGGGTTGAGCCCCTCAATTTTACCGCTGACTTGATATTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ rfastqReads.push_back(read239); + FastqRead read240; read240.setName("M00967_44_000000000-A3K85_1_1101_7483_15103"); + read240.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGCTAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(24); scores.push_back(28); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); read240.setScores(scores); + rfastqReads.push_back(read240); + FastqRead read241; read241.setName("M00967_44_000000000-A3K85_1_1101_27097_15145"); + read241.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(30); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read241.setScores(scores); + rfastqReads.push_back(read241); + FastqRead read242; read242.setName("M00967_44_000000000-A3K85_1_1101_21667_15192"); + read242.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTGGGCCCCCCAATTTGACCACTGACTTAACCATCCGCCCCCGCCCCCCTTTAACCCAAAAAATCCCGAAAACACTCCCCTCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read243.setScores(scores); + rfastqReads.push_back(read243); + FastqRead read244; read244.setName("M00967_44_000000000-A3K85_1_1101_17004_15262"); + read244.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCAAATTTGCCCGCTGACTTAAAAACCCGCCCACGACCCCCTTTAAACCAAAAAATCCGGGTAAAGCCCGCCATCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); read244.setScores(scores); + rfastqReads.push_back(read244); + FastqRead read245; read245.setName("M00967_44_000000000-A3K85_1_1101_5744_15298"); + read245.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAATGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read245.setScores(scores); + rfastqReads.push_back(read245); + FastqRead read246; read246.setName("M00967_44_000000000-A3K85_1_1101_24114_15311"); + read246.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read246.setScores(scores); + rfastqReads.push_back(read246); + FastqRead read247; read247.setName("M00967_44_000000000-A3K85_1_1101_15656_15378"); + read247.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(25); read247.setScores(scores); + rfastqReads.push_back(read247); + FastqRead read248; read248.setName("M00967_44_000000000-A3K85_1_1101_27325_15400"); + read248.setSeq("CCTGTTTGCTCCCCCGCTTTCGCCCCTCAACGGCAATTATCCGCCCAGCCTCCCCCCTCGCCCATGGGGGTTCTCCCTATTTCTACCCATTTCACCCCCTCCCCAGGGATTCCGGCTACCTCTCCGGCCCCCCAGGGAAACAGTTTCAAATTCAGTTTACGGGTTGAGCCCGTGGAGTTCACATCTGACTTGTCTCTCCGGCTGCACCCCCTTTTACACCAGTAAATCCGGGAAACGCTCGCCACCCACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(16); 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scores.push_back(13); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); read248.setScores(scores); + rfastqReads.push_back(read248); + FastqRead read249; read249.setName("M00967_44_000000000-A3K85_1_1101_2934_15422"); + read249.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAAAGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(24); read249.setScores(scores); + rfastqReads.push_back(read249); + FastqRead read250; read250.setName("M00967_44_000000000-A3K85_1_1101_28863_15441"); + read250.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(33); scores.push_back(29); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); read250.setScores(scores); + rfastqReads.push_back(read250); + FastqRead read251; read251.setName("M00967_44_000000000-A3K85_1_1101_26816_15494"); + read251.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTGCCTCTCCGACACTCTAGTCCGACAGTTTCCAATGCAGTCCCGGGGTTGAGCCCCGGGTTTTCACATCAGACTTGCCATACCGTCTCCGCCCCCTTTACACCCAGTAAATCCGGATAACCCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(18); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(30); scores.push_back(39); scores.push_back(34); scores.push_back(18); scores.push_back(20); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(20); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(12); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(13); read251.setScores(scores); + rfastqReads.push_back(read251); + FastqRead read252; read252.setName("M00967_44_000000000-A3K85_1_1101_5528_15529"); + read252.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAAGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(24); scores.push_back(32); read252.setScores(scores); + rfastqReads.push_back(read252); + FastqRead read253; read253.setName("M00967_44_000000000-A3K85_1_1101_26005_15566"); + read253.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); read253.setScores(scores); + rfastqReads.push_back(read253); + FastqRead read254; read254.setName("M00967_44_000000000-A3K85_1_1101_19227_15570"); + read254.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); read254.setScores(scores); + rfastqReads.push_back(read254); + FastqRead read255; read255.setName("M00967_44_000000000-A3K85_1_1101_10355_15659"); + read255.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGCTGCAGTTTTGAGTGCGACTATCGGTTGAGCCGGTAGTTTTGACACCCAACTTGCATCCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read256.setScores(scores); + rfastqReads.push_back(read256); + FastqRead read257; read257.setName("M00967_44_000000000-A3K85_1_1101_25630_15681"); + read257.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGTTCAACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCTGCACCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); read257.setScores(scores); + rfastqReads.push_back(read257); + FastqRead read258; read258.setName("M00967_44_000000000-A3K85_1_1101_26797_15691"); + read258.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(31); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read258.setScores(scores); + rfastqReads.push_back(read258); + FastqRead read259; read259.setName("M00967_44_000000000-A3K85_1_1101_7537_15694"); + read259.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); read259.setScores(scores); + rfastqReads.push_back(read259); + FastqRead read260; read260.setName("M00967_44_000000000-A3K85_1_1101_25553_15703"); + read260.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGCCCCCCAATTTGACCGCTGACTTGGCATCCCCCCCGCGCCCCCCTTTAAACCAATAAATCCGGGTAAACCTCCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); read260.setScores(scores); + rfastqReads.push_back(read260); + FastqRead read261; read261.setName("M00967_44_000000000-A3K85_1_1101_7091_15711"); + read261.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(28); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); read261.setScores(scores); + rfastqReads.push_back(read261); + FastqRead read262; read262.setName("M00967_44_000000000-A3K85_1_1101_6733_15824"); + read262.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); read262.setScores(scores); + rfastqReads.push_back(read262); + FastqRead read263; read263.setName("M00967_44_000000000-A3K85_1_1101_6503_15828"); + read263.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCGCGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCCATGCAGTTCCAAGGGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACCCCTGGCTTGCTTGGCCGTCTACGCTCCCTTTACACCCAGTGAATCCGGATAACGCCCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); read263.setScores(scores); + rfastqReads.push_back(read263); + FastqRead read264; read264.setName("M00967_44_000000000-A3K85_1_1101_8781_15872"); + read264.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); 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scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read264.setScores(scores); + rfastqReads.push_back(read264); + FastqRead read265; read265.setName("M00967_44_000000000-A3K85_1_1101_7235_15876"); + read265.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACCTTTGACCGCTGACTTAACAGCCCGCCTTCGCCCCCTTTAAAACCAATAAATCCGGCACACCCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read265.setScores(scores); + rfastqReads.push_back(read265); + FastqRead read266; read266.setName("M00967_44_000000000-A3K85_1_1101_15109_15953"); + read266.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTTACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); read266.setScores(scores); + rfastqReads.push_back(read266); + FastqRead read267; read267.setName("M00967_44_000000000-A3K85_1_1101_6956_15961"); + read267.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); read267.setScores(scores); + rfastqReads.push_back(read267); + FastqRead read268; read268.setName("M00967_44_000000000-A3K85_1_1101_11845_15966"); + read268.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGTCCGCCTACGCACCCTTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read268.setScores(scores); + rfastqReads.push_back(read268); + FastqRead read269; read269.setName("M00967_44_000000000-A3K85_1_1101_12012_15973"); + read269.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); read269.setScores(scores); + rfastqReads.push_back(read269); + FastqRead read270; read270.setName("M00967_44_000000000-A3K85_1_1101_15236_15983"); + read270.setSeq("CCTGTTCGATACCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(25); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); read270.setScores(scores); + rfastqReads.push_back(read270); + FastqRead read271; read271.setName("M00967_44_000000000-A3K85_1_1101_8423_15998"); + read271.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(24); read271.setScores(scores); + rfastqReads.push_back(read271); + FastqRead read272; read272.setName("M00967_44_000000000-A3K85_1_1101_16605_16023"); + read272.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read272.setScores(scores); + rfastqReads.push_back(read272); + FastqRead read273; read273.setName("M00967_44_000000000-A3K85_1_1101_14127_16046"); + read273.setSeq("CCTGTTCGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read273.setScores(scores); + rfastqReads.push_back(read273); + FastqRead read274; read274.setName("M00967_44_000000000-A3K85_1_1101_25204_16074"); + read274.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); 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scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); read274.setScores(scores); + rfastqReads.push_back(read274); + FastqRead read275; read275.setName("M00967_44_000000000-A3K85_1_1101_3254_16111"); + read275.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); 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scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); read275.setScores(scores); + rfastqReads.push_back(read275); + FastqRead read276; read276.setName("M00967_44_000000000-A3K85_1_1101_10460_16118"); + read276.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); read276.setScores(scores); + rfastqReads.push_back(read276); + FastqRead read277; read277.setName("M00967_44_000000000-A3K85_1_1101_9962_16123"); + read277.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACTGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); read277.setScores(scores); + rfastqReads.push_back(read277); + FastqRead read278; read278.setName("M00967_44_000000000-A3K85_1_1101_18435_16146"); + read278.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(13); read279.setScores(scores); + rfastqReads.push_back(read279); + FastqRead read280; read280.setName("M00967_44_000000000-A3K85_1_1101_20623_16187"); + read280.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read280.setScores(scores); + rfastqReads.push_back(read280); + FastqRead read281; read281.setName("M00967_44_000000000-A3K85_1_1101_28780_16228"); + read281.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACGCCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCCACTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(26); read281.setScores(scores); + rfastqReads.push_back(read281); + FastqRead read282; read282.setName("M00967_44_000000000-A3K85_1_1101_6585_16234"); + read282.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCCATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read282.setScores(scores); + rfastqReads.push_back(read282); + FastqRead read283; read283.setName("M00967_44_000000000-A3K85_1_1101_11179_16299"); + read283.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGCACGGGGTTGAGCCCCGCGATTTCACCGCTGACTTGAGAGTCCGCCGTCGCACCCTTTAAACCCAATAAATCCGGTAAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(28); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); read283.setScores(scores); + rfastqReads.push_back(read283); + FastqRead read284; read284.setName("M00967_44_000000000-A3K85_1_1101_12787_16334"); + read284.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); read284.setScores(scores); + rfastqReads.push_back(read284); + FastqRead read285; read285.setName("M00967_44_000000000-A3K85_1_1101_22868_16341"); + read285.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAAACCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read285.setScores(scores); + rfastqReads.push_back(read285); + FastqRead read286; read286.setName("M00967_44_000000000-A3K85_1_1101_23951_16342"); + read286.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTAATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATTACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACCCTTGCCATCTAC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); read286.setScores(scores); + rfastqReads.push_back(read286); + FastqRead read287; read287.setName("M00967_44_000000000-A3K85_1_1101_22386_16363"); + read287.setSeq("CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCCAGCCATACAGTTTCCAAAGCAGTTCCCAGGTTAAGCCCGGGTATTTCACTTCCGACTTGTATTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(13); read287.setScores(scores); + rfastqReads.push_back(read287); + FastqRead read288; read288.setName("M00967_44_000000000-A3K85_1_1101_16040_16384"); + read288.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(12); read288.setScores(scores); + rfastqReads.push_back(read288); + FastqRead read289; read289.setName("M00967_44_000000000-A3K85_1_1101_15326_16393"); + read289.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGGTGAGCCCCGACATTTGACCGCTTACTTAACAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGCAAAAGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); read289.setScores(scores); + rfastqReads.push_back(read289); + FastqRead read290; read290.setName("M00967_44_000000000-A3K85_1_1101_5293_16469"); + read290.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read290.setScores(scores); + rfastqReads.push_back(read290); + FastqRead read291; read291.setName("M00967_44_000000000-A3K85_1_1101_8861_16491"); + read291.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCTCCGGTGTTCTTCCCAATATCTACGCATTCCACCGCTACACTGGAAATTCCGCTTACCTCTCCTGCACTCCAGCCTCCCAGTTTTATGTGCAATTCCACAGTTGAGCCGTGGGCTTTCACACATAACTTAAAAGGCCGCCTACACTCCCTTTACGCCCAGTCATTCCGGACAACGCTCGCCCCATACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); read293.setScores(scores); + rfastqReads.push_back(read293); + FastqRead read294; read294.setName("M00967_44_000000000-A3K85_1_1101_26044_16626"); + read294.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read294.setScores(scores); + rfastqReads.push_back(read294); + FastqRead read295; read295.setName("M00967_44_000000000-A3K85_1_1101_19479_16638"); + read295.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCCGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(28); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read295.setScores(scores); + rfastqReads.push_back(read295); + FastqRead read296; read296.setName("M00967_44_000000000-A3K85_1_1101_19788_16652"); + read296.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCAGTTCCGCGGTTAAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(13); read296.setScores(scores); + rfastqReads.push_back(read296); + FastqRead read297; read297.setName("M00967_44_000000000-A3K85_1_1101_24163_16713"); + read297.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGGCATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTCAACCCAATAAATCCGGAAAAAGCTCCCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); read297.setScores(scores); + rfastqReads.push_back(read297); + FastqRead read298; read298.setName("M00967_44_000000000-A3K85_1_1101_11027_16755"); + read298.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTTCGCCTGGGCACCCTTTAAACCCAATAAATACGGTTAACGCCCCCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); read298.setScores(scores); + rfastqReads.push_back(read298); + FastqRead read299; read299.setName("M00967_44_000000000-A3K85_1_1101_27243_16776"); + read299.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(37); 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scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(27); scores.push_back(16); scores.push_back(29); scores.push_back(27); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(27); scores.push_back(32); scores.push_back(30); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(28); scores.push_back(27); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(37); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(30); scores.push_back(29); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(24); read299.setScores(scores); + rfastqReads.push_back(read299); + FastqRead read300; read300.setName("M00967_44_000000000-A3K85_1_1101_26588_16849"); + read300.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCACAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCCCTTCAGACTTGCTTAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(13); read300.setScores(scores); + rfastqReads.push_back(read300); + FastqRead read301; read301.setName("M00967_44_000000000-A3K85_1_1101_22040_16880"); + read301.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTTAAAGCCCGCCTACGCACCCTTTAAACCCCATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read301.setScores(scores); + rfastqReads.push_back(read301); + FastqRead read302; read302.setName("M00967_44_000000000-A3K85_1_1101_21021_16925"); + read302.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); read302.setScores(scores); + rfastqReads.push_back(read302); + FastqRead read303; read303.setName("M00967_44_000000000-A3K85_1_1101_13651_17005"); + read303.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCACTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(12); read303.setScores(scores); + rfastqReads.push_back(read303); + FastqRead read304; read304.setName("M00967_44_000000000-A3K85_1_1101_18490_17089"); + read304.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read305.setScores(scores); + rfastqReads.push_back(read305); + FastqRead read306; read306.setName("M00967_44_000000000-A3K85_1_1101_12271_17157"); + read306.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTTCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); 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scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); read306.setScores(scores); + rfastqReads.push_back(read306); + FastqRead read307; read307.setName("M00967_44_000000000-A3K85_1_1101_17533_17243"); + read307.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read307.setScores(scores); + rfastqReads.push_back(read307); + FastqRead read308; read308.setName("M00967_44_000000000-A3K85_1_1101_14162_17311"); + read308.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); read308.setScores(scores); + rfastqReads.push_back(read308); + FastqRead read309; read309.setName("M00967_44_000000000-A3K85_1_1101_11784_17334"); + read309.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read309.setScores(scores); + rfastqReads.push_back(read309); + FastqRead read310; read310.setName("M00967_44_000000000-A3K85_1_1101_13297_17341"); + read310.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGGGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); read310.setScores(scores); + rfastqReads.push_back(read310); + FastqRead read311; read311.setName("M00967_44_000000000-A3K85_1_1101_12366_17394"); + read311.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCAGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGCCCGCCAGTTTCAACGGCTCGCCGGGGTTGGGCCCCCCTCTTTTCCCTCCGGGCTGGCACCCCCCCCTACCACCCCTTTACACCCAGAAATTCCGATAAACGCCCGCCCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(32); 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scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read311.setScores(scores); + rfastqReads.push_back(read311); + FastqRead read312; read312.setName("M00967_44_000000000-A3K85_1_1101_17266_17526"); + read312.setSeq("CCTGTTCGATACCCACGCTTTCGAGCCTCAGTGTCAGTTAAAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCAGACAGTTCCAAAGGCAATCCGCGGGGTTACGCCCCGGGTTTTCACTTCTGGCTTGCCTTGCCACCTACCCCCCCTTTCCCCCCAGTAAATCCGGAACACGCTTGCCCCCTAA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(20); scores.push_back(20); scores.push_back(20); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(13); read312.setScores(scores); + rfastqReads.push_back(read312); + FastqRead read313; read313.setName("M00967_44_000000000-A3K85_1_1101_16833_17613"); + read313.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(28); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(29); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(12); read313.setScores(scores); + rfastqReads.push_back(read313); + FastqRead read314; read314.setName("M00967_44_000000000-A3K85_1_1101_8059_17679"); + read314.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read314.setScores(scores); + rfastqReads.push_back(read314); + FastqRead read315; read315.setName("M00967_44_000000000-A3K85_1_1101_26403_17681"); + read315.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read315.setScores(scores); + rfastqReads.push_back(read315); + FastqRead read316; read316.setName("M00967_44_000000000-A3K85_1_1101_28448_17772"); + read316.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGTGAGTCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTCACCTCTCCTGCACTCCAGCTTACCAGTTTTAGATGCAGTTCCGCGGTTAAGCCGCGGGATTTCACATCTAACTTGATGAGCCGCCTACACTCCCTTTACGCCCAGTCATTCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read316.setScores(scores); + rfastqReads.push_back(read316); + FastqRead read317; read317.setName("M00967_44_000000000-A3K85_1_1101_4195_17781"); + read317.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTCAGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(24); read318.setScores(scores); + rfastqReads.push_back(read318); + FastqRead read319; read319.setName("M00967_44_000000000-A3K85_1_1101_22742_17801"); + read319.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTCAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read319.setScores(scores); + rfastqReads.push_back(read319); + FastqRead read320; read320.setName("M00967_44_000000000-A3K85_1_1101_17508_17806"); + read320.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); read321.setScores(scores); + rfastqReads.push_back(read321); + FastqRead read322; read322.setName("M00967_44_000000000-A3K85_1_1101_20272_17884"); + read322.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGAGCCTCTCAAATTTACCGCTGACCTGATCTTCCGCCCGCGCACCCTTTAAAACCCAAAAAACCGGGAAACCCCCGCACCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); read322.setScores(scores); + rfastqReads.push_back(read322); + FastqRead read323; read323.setName("M00967_44_000000000-A3K85_1_1101_25367_17904"); + read323.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAAACCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); 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scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read323.setScores(scores); + rfastqReads.push_back(read323); + FastqRead read324; read324.setName("M00967_44_000000000-A3K85_1_1101_16116_17943"); + read324.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(26); scores.push_back(13); read324.setScores(scores); + rfastqReads.push_back(read324); + FastqRead read325; read325.setName("M00967_44_000000000-A3K85_1_1101_12289_17946"); + read325.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAAAGGTTGAGCCTCTCAATTTTACCGCTGCCTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read325.setScores(scores); + rfastqReads.push_back(read325); + FastqRead read326; read326.setName("M00967_44_000000000-A3K85_1_1101_19443_17988"); + read326.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGGCCCCGCAAATTGACCGCTGAATTGGCATCCCGCCCGCGCGCCCTTTAAACCCAATAAAAACGGGTAACGCCCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); read326.setScores(scores); + rfastqReads.push_back(read326); + FastqRead read327; read327.setName("M00967_44_000000000-A3K85_1_1101_5294_17989"); + read327.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGGAGGGGTTGAGCCCCCCCAATTGACCACTTACTTTAAGCGACGCCTCAGCAACCCTTACACCCACAAAAAACGGATAAAGACCCCCACCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); read328.setScores(scores); + rfastqReads.push_back(read328); + FastqRead read329; read329.setName("M00967_44_000000000-A3K85_1_1101_20386_18021"); + read329.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read329.setScores(scores); + rfastqReads.push_back(read329); + FastqRead read330; read330.setName("M00967_44_000000000-A3K85_1_1101_19437_18037"); + read330.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAGGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ read331.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTCCACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCCCCACTGCCTTAACACTCCACCTACGCTCCCTTTAACCCCAATAAATCCGGATAACGCTCGGACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); 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scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(13); read331.setScores(scores); + rfastqReads.push_back(read331); + FastqRead read332; read332.setName("M00967_44_000000000-A3K85_1_1101_21786_18090"); + read332.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read332.setScores(scores); + rfastqReads.push_back(read332); + FastqRead read333; read333.setName("M00967_44_000000000-A3K85_1_1101_29391_18162"); + read333.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGACGGGGTTGAGCCCCCGAATTTGACCGCTGACTTGGGAGCCCGCCCGCGCACCCCTTAAACCCAATAAATCCGGGGAACGCCCCCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read335.setScores(scores); + rfastqReads.push_back(read335); + FastqRead read336; read336.setName("M00967_44_000000000-A3K85_1_1101_21125_18338"); + read336.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGCTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read336.setScores(scores); + rfastqReads.push_back(read336); + FastqRead read337; read337.setName("M00967_44_000000000-A3K85_1_1101_10126_18434"); + read337.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAACCCCAATAAATCCGGATAAAGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read337.setScores(scores); + rfastqReads.push_back(read337); + FastqRead read338; read338.setName("M00967_44_000000000-A3K85_1_1101_18850_18435"); + read338.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); 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scores.push_back(35); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(24); read338.setScores(scores); + rfastqReads.push_back(read338); + FastqRead read339; read339.setName("M00967_44_000000000-A3K85_1_1101_14610_18482"); + read339.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read339.setScores(scores); + rfastqReads.push_back(read339); + FastqRead read340; read340.setName("M00967_44_000000000-A3K85_1_1101_23298_18590"); + read340.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGGTGAGCCCCCCAATTTTACCGCTGGCTTAACCGACCGCCTACGCACCCCTTAAACCCCATAAATCCCGGTAAAGCCCGCATCCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); read340.setScores(scores); + rfastqReads.push_back(read340); + FastqRead read341; read341.setName("M00967_44_000000000-A3K85_1_1101_3907_18616"); + read341.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAAAGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCCCCCTTTCAAACCCACAAATCCGGCTAACGATCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); read341.setScores(scores); + rfastqReads.push_back(read341); + FastqRead read342; read342.setName("M00967_44_000000000-A3K85_1_1101_5769_18685"); + read342.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(13); read342.setScores(scores); + rfastqReads.push_back(read342); + FastqRead read343; read343.setName("M00967_44_000000000-A3K85_1_1101_2760_18731"); + read343.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTTGCGCACTCAAGGCTCCCAGTTTCAAAGGCGGAACGGGGTTGAGCCCCGCGAATTGCCCGCCGGATTGAGAGGCCGCCTGCGAACCCTTTAACCCCCATTAATCCGGGATAAGACCGCATCCTCCGG"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(36); scores.push_back(37); 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scores.push_back(13); scores.push_back(12); read343.setScores(scores); + rfastqReads.push_back(read343); + FastqRead read344; read344.setName("M00967_44_000000000-A3K85_1_1101_4187_18740"); + read344.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAGACCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCCCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(34); scores.push_back(30); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(13); read344.setScores(scores); + rfastqReads.push_back(read344); + FastqRead read345; read345.setName("M00967_44_000000000-A3K85_1_1101_19123_18746"); + read345.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read345.setScores(scores); + rfastqReads.push_back(read345); + FastqRead read346; read346.setName("M00967_44_000000000-A3K85_1_1101_4170_18746"); + read346.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGGCAATTGACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTTAACCCAATAAATCCGGATAACGCCCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); read347.setScores(scores); + rfastqReads.push_back(read347); + FastqRead read348; read348.setName("M00967_44_000000000-A3K85_1_1101_11126_18756"); + read348.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); read348.setScores(scores); + rfastqReads.push_back(read348); + FastqRead read349; read349.setName("M00967_44_000000000-A3K85_1_1101_5112_18767"); + read349.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(34); 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scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); read349.setScores(scores); + rfastqReads.push_back(read349); + FastqRead read350; read350.setName("M00967_44_000000000-A3K85_1_1101_26182_18789"); + read350.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTCGAGCCCCGACCTTTGCCCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(28); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); read350.setScores(scores); + rfastqReads.push_back(read350); + FastqRead read351; read351.setName("M00967_44_000000000-A3K85_1_1101_26008_18807"); + read351.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCGGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCCCCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(16); scores.push_back(29); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(35); scores.push_back(19); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(18); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(28); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(16); scores.push_back(28); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(25); read351.setScores(scores); + rfastqReads.push_back(read351); + FastqRead read352; read352.setName("M00967_44_000000000-A3K85_1_1101_10915_18815"); + read352.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); read352.setScores(scores); + rfastqReads.push_back(read352); + FastqRead read353; read353.setName("M00967_44_000000000-A3K85_1_1101_14957_18837"); + read353.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCTATCTACTCAGTTTCAAAAGCAGTCCCAAGGTTGAGCCCTGGGCTTTCACTTCTGACTTGACCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); read354.setScores(scores); + rfastqReads.push_back(read354); + FastqRead read355; read355.setName("M00967_44_000000000-A3K85_1_1101_18719_19023"); + read355.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read355.setScores(scores); + rfastqReads.push_back(read355); + FastqRead read356; read356.setName("M00967_44_000000000-A3K85_1_1101_7178_19094"); + read356.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTCCACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCCAAGTGGTTGGGCCTCTCCATTTTACCCCTTACTTGGTCCTCCGCCTCTGCGCCCCTTAAACCCAATAAATACGGCTAACTCCCGCCTCCTCCC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(20); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); 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read356.setScores(scores); + rfastqReads.push_back(read356); + FastqRead read357; read357.setName("M00967_44_000000000-A3K85_1_1101_28419_19118"); + read357.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(32); read357.setScores(scores); + rfastqReads.push_back(read357); + FastqRead read358; read358.setName("M00967_44_000000000-A3K85_1_1101_5010_19129"); + read358.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCACTTCACCGCTACACTAGGAATTCCGCTTGCCTATCCAGCACTCCAGTCAGGCAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGTCTCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read358.setScores(scores); + rfastqReads.push_back(read358); + FastqRead read359; read359.setName("M00967_44_000000000-A3K85_1_1101_8397_19133"); + read359.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); read360.setScores(scores); + rfastqReads.push_back(read360); + FastqRead read361; read361.setName("M00967_44_000000000-A3K85_1_1101_13034_19159"); + read361.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read361.setScores(scores); + rfastqReads.push_back(read361); + FastqRead read362; read362.setName("M00967_44_000000000-A3K85_1_1101_13398_19215"); + read362.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); read362.setScores(scores); + rfastqReads.push_back(read362); + FastqRead read363; read363.setName("M00967_44_000000000-A3K85_1_1101_15838_19237"); + read363.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read363.setScores(scores); + rfastqReads.push_back(read363); + FastqRead read364; read364.setName("M00967_44_000000000-A3K85_1_1101_4091_19241"); + read364.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGTATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACAAGTTTCAACGGCTCGCAGAGGTTGGGCCTCTCAATTTTACAGCTTACTTGATCTTCAGCCTGCGCACCCTTTAAACTCAATAAATTCTGATAACGCTCGCATCCTGCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(30); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(29); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(32); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); read364.setScores(scores); + rfastqReads.push_back(read364); + FastqRead read365; read365.setName("M00967_44_000000000-A3K85_1_1101_23158_19247"); + read365.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGTAGAGGTGGAGCCCCCCCATTTTTCCGCTGCCCTTACTGTGCGCCCACGCCCCCCTTCAACCAAAAAAAATCCAGTAAACAGCGCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); read365.setScores(scores); + rfastqReads.push_back(read365); + FastqRead read366; read366.setName("M00967_44_000000000-A3K85_1_1101_16618_19255"); + read366.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); read366.setScores(scores); + rfastqReads.push_back(read366); + FastqRead read367; read367.setName("M00967_44_000000000-A3K85_1_1101_16081_19270"); + read367.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGAAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); read367.setScores(scores); + rfastqReads.push_back(read367); + FastqRead read368; read368.setName("M00967_44_000000000-A3K85_1_1101_10512_19272"); + read368.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read368.setScores(scores); + rfastqReads.push_back(read368); + FastqRead read369; read369.setName("M00967_44_000000000-A3K85_1_1101_23939_19272"); + read369.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCCGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(13); read369.setScores(scores); + rfastqReads.push_back(read369); + FastqRead read370; read370.setName("M00967_44_000000000-A3K85_1_1101_24582_19293"); + read370.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read370.setScores(scores); + rfastqReads.push_back(read370); + FastqRead read371; read371.setName("M00967_44_000000000-A3K85_1_1101_14238_19302"); + read371.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read371.setScores(scores); + rfastqReads.push_back(read371); + FastqRead read372; read372.setName("M00967_44_000000000-A3K85_1_1101_19144_19309"); + read372.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAACCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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+ scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(13); read373.setScores(scores); + rfastqReads.push_back(read373); + FastqRead read374; read374.setName("M00967_44_000000000-A3K85_1_1101_4073_19319"); + read374.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(26); read374.setScores(scores); + rfastqReads.push_back(read374); + FastqRead read375; read375.setName("M00967_44_000000000-A3K85_1_1101_20170_19329"); + read375.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCCCCTGCGCCCCCTTTAACACCAATAAAACCGGATAACGCTCGCACCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); 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scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(12); read375.setScores(scores); + rfastqReads.push_back(read375); + FastqRead read376; read376.setName("M00967_44_000000000-A3K85_1_1101_10382_19337"); + read376.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(37); read376.setScores(scores); + rfastqReads.push_back(read376); + FastqRead read377; read377.setName("M00967_44_000000000-A3K85_1_1101_29060_19370"); + read377.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCAAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACGCATGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(19); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(33); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(26); read377.setScores(scores); + rfastqReads.push_back(read377); + FastqRead read378; read378.setName("M00967_44_000000000-A3K85_1_1101_4545_19395"); + read378.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCCCAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(18); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(31); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(13); read378.setScores(scores); + rfastqReads.push_back(read378); + FastqRead read379; read379.setName("M00967_44_000000000-A3K85_1_1101_20007_19543"); + read379.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGCAACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCATCGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read379.setScores(scores); + rfastqReads.push_back(read379); + FastqRead read380; read380.setName("M00967_44_000000000-A3K85_1_1101_20485_19546"); + read380.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read380.setScores(scores); + rfastqReads.push_back(read380); + FastqRead read381; read381.setName("M00967_44_000000000-A3K85_1_1101_10149_19565"); + read381.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACCGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTAAAACCCAATAAATCCGGATAACGCCCGCATCCTAC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(30); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(16); scores.push_back(27); scores.push_back(29); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); read381.setScores(scores); + rfastqReads.push_back(read381); + FastqRead read382; read382.setName("M00967_44_000000000-A3K85_1_1101_12602_19638"); + read382.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTTGGCCGCCTTCGCCACCGGTGTTCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCGCCAACCTCTACTTCACTCAAGAAAGCCAGTTTCAACTGCAGTCTACAGGTTAAGCCCGTAGTTTTCACAGCTGACTTGGCTTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read383.setScores(scores); + rfastqReads.push_back(read383); + FastqRead read384; read384.setName("M00967_44_000000000-A3K85_1_1101_16943_19676"); + read384.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGCTGCAGTTTTGAGTGCGACTATCGGTTGAGCCGGTAGTTTTGACACCCAACTTGCATCCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read384.setScores(scores); + rfastqReads.push_back(read384); + FastqRead read385; read385.setName("M00967_44_000000000-A3K85_1_1101_20318_19842"); + read385.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read386.setName("M00967_44_000000000-A3K85_1_1101_12029_19867"); + read386.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGGTGGGCCCCCGATTTTTTCCCCTGGCTTTGCAAAACCCCCCCGGCCCCCCTAAAACCAATAAATTCCGCTAAAGACCCCCCCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); read386.setScores(scores); + rfastqReads.push_back(read386); + FastqRead read387; read387.setName("M00967_44_000000000-A3K85_1_1101_3379_19867"); + read387.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCCACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGTCCACGGTTTCACCCCATGATTTTTACCCTTGATTTGCAAACCCCCCCACCACCCCTCTAACCCACCTAAATCCGGACACCACCCCCCACCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(20); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(33); 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scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(26); read387.setScores(scores); + rfastqReads.push_back(read387); + FastqRead read388; read388.setName("M00967_44_000000000-A3K85_1_1101_3360_19875"); + read388.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCACTCGAGTTCGCCAGTTTCAACGGCGGGCCCGGGTTGAGGCCCGGACTTTTTCCCCCTCACTTACAACACGCCCAACCCCCCCTTTAAACCCATAAAACCCGACAACACACACATCCCCCCA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(32); 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scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); read388.setScores(scores); + rfastqReads.push_back(read388); + FastqRead read389; read389.setName("M00967_44_000000000-A3K85_1_1101_12754_19895"); + read389.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGCCCCGAAAATTGACCGCTGACTTGGCATCCCGCCCGCGCACCCCTTAAAACCAATAAAAACGGGTAAAGCCCGCGTCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(29); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); read389.setScores(scores); + rfastqReads.push_back(read389); + FastqRead read390; read390.setName("M00967_44_000000000-A3K85_1_1101_17371_19921"); + read390.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGACCCGCGGGTTTTCACTTCAGACTTGCACAACCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTCCCCCCCACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read390.setScores(scores); + rfastqReads.push_back(read390); + FastqRead read391; read391.setName("M00967_44_000000000-A3K85_1_1101_10924_19935"); + read391.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCCTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); read391.setScores(scores); + rfastqReads.push_back(read391); + FastqRead read392; read392.setName("M00967_44_000000000-A3K85_1_1101_26720_19997"); + read392.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); read392.setScores(scores); + rfastqReads.push_back(read392); + FastqRead read393; read393.setName("M00967_44_000000000-A3K85_1_1101_17333_20024"); + read393.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCCCATCAGACTTAATTAACCACCTGCCCGCTCTTTACGCCCAATACTTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); read393.setScores(scores); + rfastqReads.push_back(read393); + FastqRead read394; read394.setName("M00967_44_000000000-A3K85_1_1101_21232_20033"); + read394.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCACCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(25); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); read394.setScores(scores); + rfastqReads.push_back(read394); + FastqRead read395; read395.setName("M00967_44_000000000-A3K85_1_1101_23435_20056"); + read395.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTAC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); 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scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(26); read397.setScores(scores); + rfastqReads.push_back(read397); + FastqRead read398; read398.setName("M00967_44_000000000-A3K85_1_1101_14425_20152"); + read398.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read398.setScores(scores); + rfastqReads.push_back(read398); + FastqRead read399; read399.setName("M00967_44_000000000-A3K85_1_1101_26483_20169"); + read399.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGCCTTGGCGCACCGTCTACGCCCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCACCCACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); read399.setScores(scores); + rfastqReads.push_back(read399); + FastqRead read400; read400.setName("M00967_44_000000000-A3K85_1_1101_11677_20209"); + read400.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCACTTGCCTCTCCCACACTCTAGTCCGACAGTTTCCAATGCAGTCCCGGGGTTGAGCCCCGGGTTTTCACATCAGACTTGCCATACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(13); read400.setScores(scores); + rfastqReads.push_back(read400); + FastqRead read401; read401.setName("M00967_44_000000000-A3K85_1_1101_17973_20278"); + read401.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTCAGGCAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGTCTCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(13); read402.setScores(scores); + rfastqReads.push_back(read402); + FastqRead read403; read403.setName("M00967_44_000000000-A3K85_1_1101_7647_20478"); + read403.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGTGCCCCCCAATTTGACCCCCGACTTGGCATCCCGCCTCCGCACCCCTTTAACCCAACAAATACCGGTAACCCCCGCCTCCACCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); read403.setScores(scores); + rfastqReads.push_back(read403); + FastqRead read404; read404.setName("M00967_44_000000000-A3K85_1_1101_8720_20525"); + read404.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACCGACCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); read404.setScores(scores); + rfastqReads.push_back(read404); + FastqRead read405; read405.setName("M00967_44_000000000-A3K85_1_1101_18342_20529"); + read405.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCCATAAATCCGGATAAAGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(29); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); read405.setScores(scores); + rfastqReads.push_back(read405); + FastqRead read406; read406.setName("M00967_44_000000000-A3K85_1_1101_22228_20638"); + read406.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCCATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCCCGCATCCTCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(33); read406.setScores(scores); + rfastqReads.push_back(read406); + FastqRead read407; read407.setName("M00967_44_000000000-A3K85_1_1101_27132_20658"); + read407.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTAAGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCACCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); read407.setScores(scores); + rfastqReads.push_back(read407); + FastqRead read408; read408.setName("M00967_44_000000000-A3K85_1_1101_22945_20720"); + read408.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCACCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGAGCCTCTCAATTTTACCGCTGACTTGGTCTTCCGCCTGCGCCCCCCTTAAACCCAATAAATCCGGAATACGCTCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); read410.setScores(scores); + rfastqReads.push_back(read410); + FastqRead read411; read411.setName("M00967_44_000000000-A3K85_1_1101_25225_20825"); + read411.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCGGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCACCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read411.setScores(scores); + rfastqReads.push_back(read411); + FastqRead read412; read412.setName("M00967_44_000000000-A3K85_1_1101_19794_20840"); + read412.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read412.setScores(scores); + rfastqReads.push_back(read412); + FastqRead read413; read413.setName("M00967_44_000000000-A3K85_1_1101_6876_20848"); + read413.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read413.setScores(scores); + rfastqReads.push_back(read413); + FastqRead read414; read414.setName("M00967_44_000000000-A3K85_1_1101_4099_20862"); + read414.setSeq("CCTGTCCGATACCCACACTTTCTTGCCTCAGGGTAAGATGAGCGCCGGTATGCTGCCTTCGCAATCGGCGTTCTGCGTGATATCTATGCATTTCGCCGCTACACCACGCATTCAGCCTACTTCTCGCTCAGTCAAGAAAACCAGTTTCAACGGCCCGTAGGGGTTGGACCTCCCAAGTTTACCGATGACTTTAAACGCCGCCTTCGCATCCTTTACACAGAATAAATCCGCTTAACGCACGGATCCTCCTT"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(30); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(14); scores.push_back(14); 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scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(14); read414.setScores(scores); + rfastqReads.push_back(read414); + FastqRead read415; read415.setName("M00967_44_000000000-A3K85_1_1101_6848_20865"); + read415.setSeq("CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGATCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); read415.setScores(scores); + rfastqReads.push_back(read415); + FastqRead read416; read416.setName("M00967_44_000000000-A3K85_1_1101_6893_20866"); + read416.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACAACCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(13); read416.setScores(scores); + rfastqReads.push_back(read416); + FastqRead read417; read417.setName("M00967_44_000000000-A3K85_1_1101_4083_20883"); + read417.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGGGCGCGGGGATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGGGGTTGAGACTCTCAATTTTACCGCTGACTTGACCTTCCGCCTGCGCACCCTTTAAACCCACTACATCTGGATAATGCTCGCATGCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(16); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(29); scores.push_back(17); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(17); scores.push_back(29); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(31); scores.push_back(34); scores.push_back(27); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); read417.setScores(scores); + rfastqReads.push_back(read417); + FastqRead read418; read418.setName("M00967_44_000000000-A3K85_1_1101_3392_20903"); + read418.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(16); scores.push_back(36); 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scores.push_back(12); scores.push_back(12); read418.setScores(scores); + rfastqReads.push_back(read418); + FastqRead read419; read419.setName("M00967_44_000000000-A3K85_1_1101_6875_21019"); + read419.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTTTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCACTTCAGACTTGCTTAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); read419.setScores(scores); + rfastqReads.push_back(read419); + FastqRead read420; read420.setName("M00967_44_000000000-A3K85_1_1101_23496_21067"); + read420.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read420.setScores(scores); + rfastqReads.push_back(read420); + FastqRead read421; read421.setName("M00967_44_000000000-A3K85_1_1101_26855_21079"); + read421.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTACATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); read421.setScores(scores); + rfastqReads.push_back(read421); + FastqRead read422; read422.setName("M00967_44_000000000-A3K85_1_1101_3487_21125"); + read422.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCCATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCCCTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(14); 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scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); read422.setScores(scores); + rfastqReads.push_back(read422); + FastqRead read423; read423.setName("M00967_44_000000000-A3K85_1_1101_21622_21171"); + read423.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); read423.setScores(scores); + rfastqReads.push_back(read423); + FastqRead read424; read424.setName("M00967_44_000000000-A3K85_1_1101_11233_21240"); + read424.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read424.setScores(scores); + rfastqReads.push_back(read424); + FastqRead read425; read425.setName("M00967_44_000000000-A3K85_1_1101_4076_21257"); + read425.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGAAAGGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGAACGCCAGTTTCAACGGCGGGAACGCGGTGAGCACCGCGTTTTTACCGCTGACCTGGCAGCCCGCCTACGCCCCCTTTCAACCCAATAAATCCTTATAAAGACCGCCTCATCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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read425.setScores(scores); + rfastqReads.push_back(read425); + FastqRead read426; read426.setName("M00967_44_000000000-A3K85_1_1101_27459_21314"); + read426.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read426.setScores(scores); + rfastqReads.push_back(read426); + FastqRead read427; read427.setName("M00967_44_000000000-A3K85_1_1101_14703_21367"); + read427.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(26); read427.setScores(scores); + rfastqReads.push_back(read427); + FastqRead read428; read428.setName("M00967_44_000000000-A3K85_1_1101_21189_21392"); + read428.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); read428.setScores(scores); + rfastqReads.push_back(read428); + FastqRead read429; read429.setName("M00967_44_000000000-A3K85_1_1101_20918_21539"); + read429.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); read429.setScores(scores); + rfastqReads.push_back(read429); + FastqRead read430; read430.setName("M00967_44_000000000-A3K85_1_1101_16238_21584"); + read430.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGGTGGGCCCGGGAATTTTTTCCCTGCCCTGGCCAAAAACCCCACCCCCCCCTACAACCAAAAAAACACGACAAACCTCCCCCCCCTCA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); read430.setScores(scores); + rfastqReads.push_back(read430); + FastqRead read431; read431.setName("M00967_44_000000000-A3K85_1_1101_7115_21626"); + read431.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGCCTTGCATCACCGTCTACGCCCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(26); read431.setScores(scores); + rfastqReads.push_back(read431); + FastqRead read432; read432.setName("M00967_44_000000000-A3K85_1_1101_24430_21666"); + read432.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCGCAATATTACCGCTGACTTGGGCTCCCGCCCGCGCGCCCCTTAAACCCAATAAATACGGGTAACGCCCGCACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); read432.setScores(scores); + rfastqReads.push_back(read432); + FastqRead read433; read433.setName("M00967_44_000000000-A3K85_1_1101_11336_21709"); + read433.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTCCACAGTTTCCAAAGCAGTCCCAGGGTTGAGCCCTGGGCTTTCACTTCAGACTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(25); read433.setScores(scores); + rfastqReads.push_back(read433); + FastqRead read434; read434.setName("M00967_44_000000000-A3K85_1_1101_4254_21777"); + read434.setSeq("CCTGTTCGCTACCCACGCTTTCGTGCCTGAGCGTCAGTTGCGCTCCGGAAAGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACCTCTTGTCCACTCTAGGCCCCCAGTTTCAACGGCAGTTCGCGGGTTAAGCCCACAACTTTACCGTCGAACTTACAGCACCCCCTGCGCCCCCTTTAAGCCCAATAAACCCGGATAAAGCCTCCCACCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(36); 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scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); read434.setScores(scores); + rfastqReads.push_back(read434); + FastqRead read435; read435.setName("M00967_44_000000000-A3K85_1_1101_16791_21818"); + read435.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGCCTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(35); read435.setScores(scores); + rfastqReads.push_back(read435); + FastqRead read436; read436.setName("M00967_44_000000000-A3K85_1_1101_9642_21818"); + read436.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read436.setScores(scores); + rfastqReads.push_back(read436); + FastqRead read437; read437.setName("M00967_44_000000000-A3K85_1_1101_20197_21828"); + read437.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGACAAGAAGTTTTGAACGCAGCTACCAGTTAAGCCGGTAGATTTAACATTCAACTTTCTCGCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGCTCCCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read438.setScores(scores); + rfastqReads.push_back(read438); + FastqRead read439; read439.setName("M00967_44_000000000-A3K85_1_1101_15072_21900"); + read439.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read439.setScores(scores); + rfastqReads.push_back(read439); + FastqRead read440; read440.setName("M00967_44_000000000-A3K85_1_1101_16646_21944"); + read440.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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read441.setName("M00967_44_000000000-A3K85_1_1101_25288_22008"); + read441.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read441.setScores(scores); + rfastqReads.push_back(read441); + FastqRead read442; read442.setName("M00967_44_000000000-A3K85_1_1101_6682_22039"); + read442.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTACTTTCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCCCTTCAGACTTGCTCTGCCGTCCACGCTCCCTTTACACCCAGTAAATACGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(17); scores.push_back(32); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); 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scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(28); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); read442.setScores(scores); + rfastqReads.push_back(read442); + FastqRead read443; read443.setName("M00967_44_000000000-A3K85_1_1101_21986_22111"); + read443.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read443.setScores(scores); + rfastqReads.push_back(read443); + FastqRead read444; read444.setName("M00967_44_000000000-A3K85_1_1101_18056_22134"); + read444.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGAAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGAGCTTTCACGTTAGCCTTGCAGAACCGTCAACCATCCCTTTACACCCATTAAATCAGGATAACCCTCGACCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(33); 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scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); read444.setScores(scores); + rfastqReads.push_back(read444); + FastqRead read445; read445.setName("M00967_44_000000000-A3K85_1_1101_7468_22202"); + read445.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGCTGCAGTTTTGAGTGCGACTATCGGTTGAGCCGGTAGTTTTGACACCCAACTTGCATCCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read445.setScores(scores); + rfastqReads.push_back(read445); + FastqRead read446; read446.setName("M00967_44_000000000-A3K85_1_1101_11667_22289"); + read446.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read446.setScores(scores); + rfastqReads.push_back(read446); + FastqRead read447; read447.setName("M00967_44_000000000-A3K85_1_1101_24319_22301"); + read447.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGCTAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(34); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(35); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read447.setScores(scores); + rfastqReads.push_back(read447); + FastqRead read448; read448.setName("M00967_44_000000000-A3K85_1_1101_9711_22306"); + read448.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); read448.setScores(scores); + rfastqReads.push_back(read448); + FastqRead read449; read449.setName("M00967_44_000000000-A3K85_1_1101_17288_22307"); + read449.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGGAGGGGTGGAGCCCCCCCAATTTACCACCGCCTTAAAGATCCCCCCACGCACCCCTTTAAACCCAAAAAAACCGGACACACCCCCCCCCCCCC"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read449.setScores(scores); + rfastqReads.push_back(read449); + FastqRead read450; read450.setName("M00967_44_000000000-A3K85_1_1101_6536_22322"); + read450.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTTGGGGGTGTGCCCCGACATTTGACCGCCGCCTTGGCCTCCCCCCTGAGCCCCCCTTTAAACCCAAAAAACCCGATAAACCTCCCCTCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(14); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read452.setScores(scores); + rfastqReads.push_back(read452); + FastqRead read453; read453.setName("M00967_44_000000000-A3K85_1_1101_9624_22393"); + read453.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read453.setScores(scores); + rfastqReads.push_back(read453); + FastqRead read454; read454.setName("M00967_44_000000000-A3K85_1_1101_16702_22428"); + read454.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTAACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read454.setScores(scores); + rfastqReads.push_back(read454); + FastqRead read455; read455.setName("M00967_44_000000000-A3K85_1_1101_22846_22476"); + read455.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTAGAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTACCTCTACTCCACTCAAGCTCTGCAGTTTCAAAAGCAGTTCATGGGTTAAGCCCATGGATTTCACTTCTGACTTGCAAAGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read455.setScores(scores); + rfastqReads.push_back(read455); + FastqRead read456; read456.setName("M00967_44_000000000-A3K85_1_1101_4865_22519"); + read456.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(13); read456.setScores(scores); + rfastqReads.push_back(read456); + FastqRead read457; read457.setName("M00967_44_000000000-A3K85_1_1101_22826_22575"); + read457.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read457.setScores(scores); + rfastqReads.push_back(read457); + FastqRead read458; read458.setName("M00967_44_000000000-A3K85_1_1101_9799_22582"); + read458.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(25); read458.setScores(scores); + rfastqReads.push_back(read458); + FastqRead read459; read459.setName("M00967_44_000000000-A3K85_1_1101_26977_22609"); + read459.setSeq("CCTGTTCGATCCCCGCACTTGCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGGTATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGGCCGCATCCTCCGT"); + scores.clear(); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(36); 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scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); read459.setScores(scores); + rfastqReads.push_back(read459); + FastqRead read460; read460.setName("M00967_44_000000000-A3K85_1_1101_8292_22634"); + read460.setSeq("CCCGTTTGCTCCCCTAGCTTTCGTCTCTGAGTGTCAGTAATGGCCCAGTAAAGTGCCTTCGCTGTTGGTGTTCTTTCCAATATCTACGCATTTCACCGCTCCACTGGAAATTCCCTTTACCTCTACCATACTCAAGATAAGTAGTTTCCTTTGCGGACTTCAGGTTAAGCCTGAAAATTTAACAAAAGACTTACTTATCCACCTGCAGACGCTTTACGCCCAATAATTCCGGATAACACTTGCATCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(36); read460.setScores(scores); + rfastqReads.push_back(read460); + FastqRead read461; read461.setName("M00967_44_000000000-A3K85_1_1101_18065_22676"); + read461.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCACTGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGCCTCGCAGTTTCCAAAGCGGTTCCGCGGTTGAGCCACGGGCTTTCACTTCAGACTTGCGACGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read461.setScores(scores); + rfastqReads.push_back(read461); + FastqRead read462; read462.setName("M00967_44_000000000-A3K85_1_1101_8616_22725"); + read462.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGATAACGCTCGCATACTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); 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scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(24); read462.setScores(scores); + rfastqReads.push_back(read462); + FastqRead read463; read463.setName("M00967_44_000000000-A3K85_1_1101_18079_22767"); + read463.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCTGCTCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); read465.setScores(scores); + rfastqReads.push_back(read465); + FastqRead read466; read466.setName("M00967_44_000000000-A3K85_1_1101_6116_22819"); + read466.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTAAGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAAG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); 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read466.setScores(scores); + rfastqReads.push_back(read466); + FastqRead read467; read467.setName("M00967_44_000000000-A3K85_1_1101_25549_22917"); + read467.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCCCAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCACTAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(16); scores.push_back(27); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(14); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(33); scores.push_back(26); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); read467.setScores(scores); + rfastqReads.push_back(read467); + FastqRead read468; read468.setName("M00967_44_000000000-A3K85_1_1101_7259_22951"); + read468.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCTATACAGTTTCCAAAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTTCAGACTTGCTCTGCCACCTACTCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCTCCATACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read468.setScores(scores); + rfastqReads.push_back(read468); + FastqRead read469; read469.setName("M00967_44_000000000-A3K85_1_1101_7361_22954"); + read469.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGGTTCTCCGCCTGCGCACCCTTTAAACCCAATCAATCCGGATAACACCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(15); scores.push_back(15); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); read469.setScores(scores); + rfastqReads.push_back(read469); + FastqRead read470; read470.setName("M00967_44_000000000-A3K85_1_1101_10891_22975"); + read470.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAAAAGGTGGGCCCCTCAAATTTACCCCCGACTTAACTGTCCGCCTACGCGCCCCTTAAAACCAAAAAATACCGATAAAGCTCGCATCCCCAG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); read470.setScores(scores); + rfastqReads.push_back(read470); + FastqRead read471; read471.setName("M00967_44_000000000-A3K85_1_1101_25992_23047"); + read471.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCAACCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(32); read471.setScores(scores); + rfastqReads.push_back(read471); + FastqRead read472; read472.setName("M00967_44_000000000-A3K85_1_1101_9491_23061"); + read472.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTGCCTCTCCGACACTCTAGTCCGACAGTTTCCAATGCAGTCCCGGGGTTGAGCCCCGGGTTTTCACATCAGACTTGCCATACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); read472.setScores(scores); + rfastqReads.push_back(read472); + FastqRead read473; read473.setName("M00967_44_000000000-A3K85_1_1101_23837_23142"); + read473.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCCCAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read473.setScores(scores); + rfastqReads.push_back(read473); + FastqRead read474; read474.setName("M00967_44_000000000-A3K85_1_1101_25372_23145"); + read474.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCCCTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read474.setScores(scores); + rfastqReads.push_back(read474); + FastqRead read475; read475.setName("M00967_44_000000000-A3K85_1_1101_6336_23184"); + read475.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTCACCTCTCCTGCACTCCAGTCACATAGATTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); read475.setScores(scores); + rfastqReads.push_back(read475); + FastqRead read476; read476.setName("M00967_44_000000000-A3K85_1_1101_16115_23214"); + read476.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read478.setScores(scores); + rfastqReads.push_back(read478); + FastqRead read479; read479.setName("M00967_44_000000000-A3K85_1_1101_21980_23287"); + read479.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGAGCCCCCCAATTTTACCGCTGACTTAACCGTCCGCCTACGCCCCCCTTAAACCCAACAAAAACCGATAAACCCCGCCTCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); read479.setScores(scores); + rfastqReads.push_back(read479); + FastqRead read480; read480.setName("M00967_44_000000000-A3K85_1_1101_12849_23367"); + read480.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); read480.setScores(scores); + rfastqReads.push_back(read480); + FastqRead read481; read481.setName("M00967_44_000000000-A3K85_1_1101_21289_23407"); + read481.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCCTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); 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scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read481.setScores(scores); + rfastqReads.push_back(read481); + FastqRead read482; read482.setName("M00967_44_000000000-A3K85_1_1101_26776_23418"); + read482.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(24); read482.setScores(scores); + rfastqReads.push_back(read482); + FastqRead read483; read483.setName("M00967_44_000000000-A3K85_1_1101_26779_23456"); + read483.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAAATTTGCCCTCTGACTTGGCATCCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); 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scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); read483.setScores(scores); + rfastqReads.push_back(read483); + FastqRead read484; read484.setName("M00967_44_000000000-A3K85_1_1101_17214_23512"); + read484.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); read484.setScores(scores); + rfastqReads.push_back(read484); + FastqRead read485; read485.setName("M00967_44_000000000-A3K85_1_1101_9314_23515"); + read485.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(29); scores.push_back(12); scores.push_back(25); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(25); read485.setScores(scores); + rfastqReads.push_back(read485); + FastqRead read486; read486.setName("M00967_44_000000000-A3K85_1_1101_9463_23593"); + read486.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCGCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGCATTTTTACCGCTGACTTAAAAGCCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); 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scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(12); read486.setScores(scores); + rfastqReads.push_back(read486); + FastqRead read487; read487.setName("M00967_44_000000000-A3K85_1_1101_20398_23666"); + read487.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read487.setScores(scores); + rfastqReads.push_back(read487); + FastqRead read488; read488.setName("M00967_44_000000000-A3K85_1_1101_11486_23707"); + read488.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(24); read488.setScores(scores); + rfastqReads.push_back(read488); + FastqRead read489; read489.setName("M00967_44_000000000-A3K85_1_1101_21757_23772"); + read489.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCCATAAATCCGGATAACGCCCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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+ scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); read490.setScores(scores); + rfastqReads.push_back(read490); + FastqRead read491; read491.setName("M00967_44_000000000-A3K85_1_1101_20541_23813"); + read491.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read491.setScores(scores); + rfastqReads.push_back(read491); + FastqRead read492; read492.setName("M00967_44_000000000-A3K85_1_1101_10282_23861"); + read492.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCGGGCCGCCTACGCACCCTTTAAACCCAATAAAACCGGATAAAGCTCGCATCCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); 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scores.push_back(38); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); read493.setScores(scores); + rfastqReads.push_back(read493); + FastqRead read494; read494.setName("M00967_44_000000000-A3K85_1_1101_8803_23916"); + read494.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read494.setScores(scores); + rfastqReads.push_back(read494); + FastqRead read495; read495.setName("M00967_44_000000000-A3K85_1_1101_26359_23948"); + read495.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read495.setScores(scores); + rfastqReads.push_back(read495); + FastqRead read496; read496.setName("M00967_44_000000000-A3K85_1_1101_21189_24129"); + read496.setSeq("CATGTTTAATGCCCGTATATTCGTGACTCTTAACCATTCGGGCGCCGGTGTCCTGACTTCCATACTGGGGTACTGTGTGACACCGACCAATTTCAACGCTACGCTAGGGATTCCAATTGGCTCAAAGGCCTACCAGCATGGCAATTGCAAATGCAGTCCCGGAGGTGGGAACCGGGGTTTCACCAACGACTTCCAACTCCGCCTGCGCTCCCTCGACACCCGGTGCAGCCGGATAACGCTTACGCCCTCCA"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(18); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); 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scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); read496.setScores(scores); + rfastqReads.push_back(read496); + FastqRead read497; read497.setName("M00967_44_000000000-A3K85_1_1101_17792_24133"); + read497.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCTCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); read497.setScores(scores); + rfastqReads.push_back(read497); + FastqRead read498; read498.setName("M00967_44_000000000-A3K85_1_1101_12653_24163"); + read498.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(13); read498.setScores(scores); + rfastqReads.push_back(read498); + FastqRead read499; read499.setName("M00967_44_000000000-A3K85_1_1101_5807_24212"); + read499.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATTCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); read499.setScores(scores); + rfastqReads.push_back(read499); + FastqRead read500; read500.setName("M00967_44_000000000-A3K85_1_1101_22000_24235"); + read500.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read500.setScores(scores); + rfastqReads.push_back(read500); + FastqRead read501; read501.setName("M00967_44_000000000-A3K85_1_1101_15538_24267"); + read501.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read501.setScores(scores); + rfastqReads.push_back(read501); + FastqRead read502; read502.setName("M00967_44_000000000-A3K85_1_1101_22787_24309"); + read502.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(13); read502.setScores(scores); + rfastqReads.push_back(read502); + FastqRead read503; read503.setName("M00967_44_000000000-A3K85_1_1101_18941_24333"); + read503.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); read503.setScores(scores); + rfastqReads.push_back(read503); + FastqRead read504; read504.setName("M00967_44_000000000-A3K85_1_1101_25726_24382"); + read504.setSeq("CCTGTTTGCTACCCACGCTTTCGAACCTCAGCGTCAGTTACAGACCAGAGAGCCGCTTTCGCCACTGGTGTTCTTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTCTCCCAGTTTCCAATGCACTACTCCGGTTAAGCCGAAGGCTTTCACATCAGACTTAAAAGACCGCCTGCGTTCCCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read504.setScores(scores); + rfastqReads.push_back(read504); + FastqRead read505; read505.setName("M00967_44_000000000-A3K85_1_1101_20330_24435"); + read505.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(13); read506.setScores(scores); + rfastqReads.push_back(read506); + FastqRead read507; read507.setName("M00967_44_000000000-A3K85_1_1101_21342_24637"); + read507.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGGTCCGGGGTTGAGCCCCGGAATTTCACATCTGACTTGTCAGCCCGGCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCTCCATACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read507.setScores(scores); + rfastqReads.push_back(read507); + FastqRead read508; read508.setName("M00967_44_000000000-A3K85_1_1101_9308_24701"); + read508.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTAACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); read508.setScores(scores); + rfastqReads.push_back(read508); + FastqRead read509; read509.setName("M00967_44_000000000-A3K85_1_1101_18612_24717"); + read509.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGCTTTGCCCGCTGACTTGAGAGGCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read509.setScores(scores); + rfastqReads.push_back(read509); + FastqRead read510; read510.setName("M00967_44_000000000-A3K85_1_1101_10385_24730"); + read510.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read510.setScores(scores); + rfastqReads.push_back(read510); + FastqRead read511; read511.setName("M00967_44_000000000-A3K85_1_1101_21604_24874"); + read511.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read511.setScores(scores); + rfastqReads.push_back(read511); + FastqRead read512; read512.setName("M00967_44_000000000-A3K85_1_1101_21717_24894"); + read512.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTTGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAGCCCGCCTCCGCACCCTTTTAAACCAATAAATCCGGATAACGCTCCCATCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read512.setScores(scores); + rfastqReads.push_back(read512); + FastqRead read513; read513.setName("M00967_44_000000000-A3K85_1_1101_7477_24912"); + read513.setSeq("CCTGTTCGATCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCACTTGCCTCTCCGACACTCTAGATATACAGTTTCCAATGCAGTTCCGGGGTTGGGCCCCGGATTTTCACATCAGACTTGCAAGTCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(13); read513.setScores(scores); + rfastqReads.push_back(read513); + FastqRead read514; read514.setName("M00967_44_000000000-A3K85_1_1101_11885_24913"); + read514.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGCTGGAGTTGAGCTCCCCAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACCCCCGCAACCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); read514.setScores(scores); + rfastqReads.push_back(read514); + FastqRead read515; read515.setName("M00967_44_000000000-A3K85_1_1101_8995_25063"); + read515.setSeq("CCTGTTCGATACCCACGCTTTCGAGCATCAACGTCAGTCGCCGGCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCGTGATATCTACGCATTTCACCGCTACACCAGGCATTCCGCTTACCCCTCCGGCGCTCCAGCCGGCCAGTTTCCAATGCAGTCCGAGGGTTGGGCCCCCGCCTTTAACATACGTCTTGCCGAGCCGTCTACGGCCCCTTTACACCCAGTAAATCCGGATAACGCTCGCTCGCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); 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scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); read515.setScores(scores); + rfastqReads.push_back(read515); + FastqRead read516; read516.setName("M00967_44_000000000-A3K85_1_1101_21889_25065"); + read516.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGAGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); 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scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); read516.setScores(scores); + rfastqReads.push_back(read516); + FastqRead read517; read517.setName("M00967_44_000000000-A3K85_1_1101_11795_25120"); + read517.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(29); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(24); scores.push_back(29); scores.push_back(28); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); read517.setScores(scores); + rfastqReads.push_back(read517); + FastqRead read518; read518.setName("M00967_44_000000000-A3K85_1_1101_22305_25145"); + read518.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(12); 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scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(13); read520.setScores(scores); + rfastqReads.push_back(read520); + FastqRead read521; read521.setName("M00967_44_000000000-A3K85_1_1101_7504_25257"); + read521.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTTAACTTCCCCCTGCGGACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); 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scores.push_back(13); read521.setScores(scores); + rfastqReads.push_back(read521); + FastqRead read522; read522.setName("M00967_44_000000000-A3K85_1_1101_18205_25260"); + read522.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGAACGCTGCCTTTACAGCCCGCCCTCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); 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scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read522.setScores(scores); + rfastqReads.push_back(read522); + FastqRead read523; read523.setName("M00967_44_000000000-A3K85_1_1101_9218_25286"); + read523.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(13); read523.setScores(scores); + rfastqReads.push_back(read523); + FastqRead read524; read524.setName("M00967_44_000000000-A3K85_1_1101_11547_25305"); + read524.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCCATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(32); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(28); scores.push_back(28); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); read524.setScores(scores); + rfastqReads.push_back(read524); + FastqRead read525; read525.setName("M00967_44_000000000-A3K85_1_1101_8524_25310"); + read525.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); read525.setScores(scores); + rfastqReads.push_back(read525); + FastqRead read526; read526.setName("M00967_44_000000000-A3K85_1_1101_18249_25337"); + read526.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCTTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(26); read526.setScores(scores); + rfastqReads.push_back(read526); + FastqRead read527; read527.setName("M00967_44_000000000-A3K85_1_1101_20774_25379"); + read527.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); read527.setScores(scores); + rfastqReads.push_back(read527); + FastqRead read528; read528.setName("M00967_44_000000000-A3K85_1_1101_18472_25401"); + read528.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read528.setScores(scores); + rfastqReads.push_back(read528); + FastqRead read529; read529.setName("M00967_44_000000000-A3K85_1_1101_19848_25477"); + read529.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); read529.setScores(scores); + rfastqReads.push_back(read529); + FastqRead read530; read530.setName("M00967_44_000000000-A3K85_1_1101_15867_25556"); + read530.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read530.setScores(scores); + rfastqReads.push_back(read530); + FastqRead read531; read531.setName("M00967_44_000000000-A3K85_1_1101_21874_25569"); + read531.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read533.setScores(scores); + rfastqReads.push_back(read533); + FastqRead read534; read534.setName("M00967_44_000000000-A3K85_1_1101_15927_25631"); + read534.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read534.setScores(scores); + rfastqReads.push_back(read534); + FastqRead read535; read535.setName("M00967_44_000000000-A3K85_1_1101_23163_25633"); + read535.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read535.setScores(scores); + rfastqReads.push_back(read535); + FastqRead read536; read536.setName("M00967_44_000000000-A3K85_1_1101_10093_25778"); + read536.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCACCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); read536.setScores(scores); + rfastqReads.push_back(read536); + FastqRead read537; read537.setName("M00967_44_000000000-A3K85_1_1101_23299_25955"); + read537.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read537.setScores(scores); + rfastqReads.push_back(read537); + FastqRead read538; read538.setName("M00967_44_000000000-A3K85_1_1101_19016_25958"); + read538.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); 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scores.push_back(24); scores.push_back(26); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read538.setScores(scores); + rfastqReads.push_back(read538); + FastqRead read539; read539.setName("M00967_44_000000000-A3K85_1_1101_22265_25979"); + read539.setSeq("CCTATTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGCCGCCGGAAGTCTGCCTTCGCAATCGTGGTTCTGCGTGATATCTATGCATTTCACCGCTTTACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTCAAAGCCCGCCTACGCACCCTTTAAACCCAATACATCCGGATAACGCTCGCATACTCAGA"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(31); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(30); 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scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(28); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); read539.setScores(scores); + rfastqReads.push_back(read539); + FastqRead read540; read540.setName("M00967_44_000000000-A3K85_1_1101_7972_25997"); + read540.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCAAATAAATCCGGGTAACGACAGCATTCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); read540.setScores(scores); + rfastqReads.push_back(read540); + FastqRead read541; read541.setName("M00967_44_000000000-A3K85_1_1101_14853_26038"); + read541.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(24); read541.setScores(scores); + rfastqReads.push_back(read541); + FastqRead read542; read542.setName("M00967_44_000000000-A3K85_1_1101_12867_26080"); + read542.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGGCCCCGCAATTTGTCCGCTGCCTTGGCGTCCCGCCTGCGCACCATCTCACACCAATAAATCCGGGTAAAGCACGCCCCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read542.setScores(scores); + rfastqReads.push_back(read542); + FastqRead read543; read543.setName("M00967_44_000000000-A3K85_1_1101_17605_26085"); + read543.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTACCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read543.setScores(scores); + rfastqReads.push_back(read543); + FastqRead read544; read544.setName("M00967_44_000000000-A3K85_1_1101_8923_26225"); + read544.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGGTGAGCCCCGGCATTTGGCCGCTGACTTAACAGACCGCCTATGCACCCTTTTAACCCAATAAAACCGGATCAAGCTCGCATCCTCAGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); 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scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read545.setScores(scores); + rfastqReads.push_back(read545); + FastqRead read546; read546.setName("M00967_44_000000000-A3K85_1_1101_16708_26253"); + read546.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTACATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); 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scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(28); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); read546.setScores(scores); + rfastqReads.push_back(read546); + FastqRead read547; read547.setName("M00967_44_000000000-A3K85_1_1101_19255_26278"); + read547.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); read548.setScores(scores); + rfastqReads.push_back(read548); + FastqRead read549; read549.setName("M00967_44_000000000-A3K85_1_1101_17570_26347"); + read549.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATTACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read549.setScores(scores); + rfastqReads.push_back(read549); + FastqRead read550; read550.setName("M00967_44_000000000-A3K85_1_1101_17589_26350"); + read550.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATTACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCCCGCCCTTTACACCCAGTACATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read550.setScores(scores); + rfastqReads.push_back(read550); + FastqRead read551; read551.setName("M00967_44_000000000-A3K85_1_1101_20406_26374"); + read551.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATCTCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTCCCGCCGACTTTACGGACCGCCCAACGCCCCCTTTAACCCAATAAAACCGGATAACGCTTCCCCCCTTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); read551.setScores(scores); + rfastqReads.push_back(read551); + FastqRead read552; read552.setName("M00967_44_000000000-A3K85_1_1101_22581_26381"); + read552.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(13); read552.setScores(scores); + rfastqReads.push_back(read552); + FastqRead read553; read553.setName("M00967_44_000000000-A3K85_1_1101_13879_26453"); + read553.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAAGAATTCCACTTGCCTCTCCTGCACTCCAGCTGAGCAGTTTCTAATGCATTCCCCTAGTTGAGCTTTGGGCTTTCACTTCGGACTTGCTCTGCCACCTTCTCTCCCTTTACACCCCGTAAATCCGGATAACGCTTGCTCCATACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(20); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(31); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(29); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(28); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read553.setScores(scores); + rfastqReads.push_back(read553); + FastqRead read554; read554.setName("M00967_44_000000000-A3K85_1_1101_10295_26460"); + read554.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGCCCCCAAATTTGCCCGCTGCCTTGGCAGCCCCCCTGCGCACCCTTTTAAACCCCTAAATCCCGATAAAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(13); read555.setScores(scores); + rfastqReads.push_back(read555); + FastqRead read556; read556.setName("M00967_44_000000000-A3K85_1_1101_9342_26543"); + read556.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGCGCCTCTCCATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); read556.setScores(scores); + rfastqReads.push_back(read556); + FastqRead read557; read557.setName("M00967_44_000000000-A3K85_1_1101_16675_26558"); + read557.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); 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read558.setName("M00967_44_000000000-A3K85_1_1101_8837_26620"); + read558.setSeq("CCTGTTTGATCCCCAAGCTTTCGTCCCTCAACGTCAGTCGTCGTTTAGTAAGCTGCCTTCGCAATTGGTGTTCCTTATAATCTCTACGCATTTCACCGCTACACTATATATTCCACTTACCTCCTCTAAACTCTAGCCTGACAGTATCAATGGCCGTGCCGGCGTTAAGCCCCGGGCTTTCACCTCTGACTTACCGATCCGCCTACGCACCCTTTCAACCCAATGATTCCGGCTAACGCTTGCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read558.setScores(scores); + rfastqReads.push_back(read558); + FastqRead read559; read559.setName("M00967_44_000000000-A3K85_1_1101_22910_26690"); + read559.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTTCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATACAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read559.setScores(scores); + rfastqReads.push_back(read559); + FastqRead read560; read560.setName("M00967_44_000000000-A3K85_1_1101_13859_26741"); + read560.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTAACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGCCTTGATTTTCCGCCTGCGCACCCTTTAAACCCAATACATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(13); read560.setScores(scores); + rfastqReads.push_back(read560); + FastqRead read561; read561.setName("M00967_44_000000000-A3K85_1_1101_10265_26758"); + read561.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTATCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGGAAGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGACGCCTACGCACCCTTTAAACCCAATACATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); 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scores.push_back(17); scores.push_back(17); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(27); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(29); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(29); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read561.setScores(scores); + rfastqReads.push_back(read561); + FastqRead read562; read562.setName("M00967_44_000000000-A3K85_1_1101_10257_26775"); + read562.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGAACGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACAGCTGACTTGGGAGGCCGACTACGGACCCTTACAAACCAATAAATCAGGATAAGGCTAGCATCCTCCGA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(18); scores.push_back(36); scores.push_back(19); scores.push_back(19); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(27); scores.push_back(28); scores.push_back(16); scores.push_back(29); scores.push_back(27); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(36); scores.push_back(27); scores.push_back(35); scores.push_back(27); scores.push_back(13); scores.push_back(14); scores.push_back(27); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(28); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); read562.setScores(scores); + rfastqReads.push_back(read562); + FastqRead read563; read563.setName("M00967_44_000000000-A3K85_1_1101_22404_26859"); + read563.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGGGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTAAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGAACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(29); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(16); scores.push_back(29); scores.push_back(31); scores.push_back(17); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(12); read563.setScores(scores); + rfastqReads.push_back(read563); + FastqRead read564; read564.setName("M00967_44_000000000-A3K85_1_1101_11257_26889"); + read564.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGGCCCCCCAAATTTAACCCCGACTCTGGATCCCCCCCGCGCCCCCCTTAAACCCAATAAAAACGGGAAAAGCCAGCATCCTCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); read564.setScores(scores); + rfastqReads.push_back(read564); + FastqRead read565; read565.setName("M00967_44_000000000-A3K85_1_1101_17949_26920"); + read565.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); 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scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); read565.setScores(scores); + rfastqReads.push_back(read565); + FastqRead read566; read566.setName("M00967_44_000000000-A3K85_1_1101_14506_26923"); + read566.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTAATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATTACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACCCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(34); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(18); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(13); read566.setScores(scores); + rfastqReads.push_back(read566); + FastqRead read567; read567.setName("M00967_44_000000000-A3K85_1_1101_11808_26943"); + read567.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATCACGCCCGCATCATCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); read568.setScores(scores); + rfastqReads.push_back(read568); + FastqRead read569; read569.setName("M00967_44_000000000-A3K85_1_1101_22847_27011"); + read569.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACAGCCTACGACCCCTTTAAAACCAATAAATCCGGATCACGCCCGCCTCTCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read569.setScores(scores); + rfastqReads.push_back(read569); + FastqRead read570; read570.setName("M00967_44_000000000-A3K85_1_1101_12808_27149"); + read570.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read570.setScores(scores); + rfastqReads.push_back(read570); + FastqRead read571; read571.setName("M00967_44_000000000-A3K85_1_1101_21606_27182"); + read571.setSeq("CCTGTTTGCTCCCCACGATTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGCCTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTCC"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); 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scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); read571.setScores(scores); + rfastqReads.push_back(read571); + FastqRead read572; read572.setName("M00967_44_000000000-A3K85_1_1101_21515_27198"); + read572.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCGAAAATTGACCGCTGAATTGGCATCCCGCCCGCGCCCCCTTTAAACCCAATAAATCCGGAGAAAGACCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(36); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(29); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); read572.setScores(scores); + rfastqReads.push_back(read572); + FastqRead read573; read573.setName("M00967_44_000000000-A3K85_1_1101_11124_27325"); + read573.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACCTTTGACCGCTGACTTAAAAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(30); scores.push_back(27); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); read573.setScores(scores); + rfastqReads.push_back(read573); + FastqRead read574; read574.setName("M00967_44_000000000-A3K85_1_1101_12290_27349"); + read574.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTGACCGCTGACTTAACAGCCCGCCTAAGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); read574.setScores(scores); + rfastqReads.push_back(read574); + FastqRead read575; read575.setName("M00967_44_000000000-A3K85_1_1101_13601_27512"); + read575.setSeq("CCTGTTCGATACCCATGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGGGATCCCGCCTACGCACCCTTTCAACCCAATTAATCCGGGTAAAGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); 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scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(31); scores.push_back(14); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(27); scores.push_back(32); scores.push_back(27); scores.push_back(35); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(28); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read575.setScores(scores); + rfastqReads.push_back(read575); + FastqRead read576; read576.setName("M00967_44_000000000-A3K85_1_1101_11009_27586"); + read576.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGACGGGGGGTGGCCGGCGGTTTTTCCGCCTCCCGCAGAAACCAGCCACGCCACCCCTTAAACCAAAAAAAACGGAAAAACCCCCCATACCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(19); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); read576.setScores(scores); + rfastqReads.push_back(read576); + FastqRead read577; read577.setName("M00967_44_000000000-A3K85_1_1101_19039_27906"); + read577.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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read577.setScores(scores); + rfastqReads.push_back(read577); + FastqRead read578; read578.setName("M00967_44_000000000-A3K85_1_1101_21462_27924"); + read578.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); read578.setScores(scores); + rfastqReads.push_back(read578); + FastqRead read579; read579.setName("M00967_44_000000000-A3K85_1_1101_15578_27984"); + read579.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGATGACCTCTCCGATACTCAAGGGAAACAGTTTCAAATGCAGTTCGCAGGTTGAGCCTGCGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); read579.setScores(scores); + rfastqReads.push_back(read579); + FastqRead read580; read580.setName("M00967_44_000000000-A3K85_1_1101_19320_28114"); + read580.setSeq("CCTGTTTGATACCCACACTTTCGTGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCTACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCACTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(32); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); read580.setScores(scores); + rfastqReads.push_back(read580); + FastqRead read581; read581.setName("M00967_44_000000000-A3K85_1_1101_11162_28308"); + read581.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTCAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(33); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(27); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(27); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(12); read581.setScores(scores); + rfastqReads.push_back(read581); + FastqRead read582; read582.setName("M00967_44_000000000-A3K85_1_1101_19555_28367"); + read582.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(24); read582.setScores(scores); + rfastqReads.push_back(read582); + FastqRead read583; read583.setName("M00967_44_000000000-A3K85_1_1101_19486_28401"); + read583.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTACACCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCGGCACTCGAGCGGGGCAGTTCCCAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCAGGCTTGCCCTGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCATA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); read583.setScores(scores); + rfastqReads.push_back(read583); + FastqRead read584; read584.setName("M00967_44_000000000-A3K85_1_1102_15835_1461"); + read584.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCCATCGGAGTTCTTCGGGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCNCTACTGTACNCAAGACTGCCAGTTTCAACNNCAATTTTACNNNNNNNNNNNNNANTTTCACAACTGCCTTAACAATCCACCTACGCTCCCTCTAAACCCAATAAATACGGATAACGCTCGGATCATCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(20); 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read584.setScores(scores); + rfastqReads.push_back(read584); + FastqRead read585; read585.setName("M00967_44_000000000-A3K85_1_1102_17341_1618"); + read585.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAAAGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read585.setScores(scores); + rfastqReads.push_back(read585); + FastqRead read586; read586.setName("M00967_44_000000000-A3K85_1_1102_15830_1662"); + read586.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(20); scores.push_back(19); scores.push_back(36); scores.push_back(38); scores.push_back(30); 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scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); read586.setScores(scores); + rfastqReads.push_back(read586); + FastqRead read587; read587.setName("M00967_44_000000000-A3K85_1_1102_17208_1982"); + read587.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCTCAGTTTCAACGGCTGCACGGGGTTGAGCCCCGCGATTTTACCGCTGCCTTGTGAGTCCGCCGCCGCACCCTTTAAACCCAATAAATCAGGATAACGCTCGCATCTTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(16); scores.push_back(18); scores.push_back(32); scores.push_back(29); scores.push_back(16); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(16); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(32); 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scores.push_back(34); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(24); read587.setScores(scores); + rfastqReads.push_back(read587); + FastqRead read588; read588.setName("M00967_44_000000000-A3K85_1_1102_14995_2251"); + read588.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGAATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTTGGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCACTAACTCCGGGTAAAGCTCGCATCCACCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); read588.setScores(scores); + rfastqReads.push_back(read588); + FastqRead read589; read589.setName("M00967_44_000000000-A3K85_1_1102_11948_2260"); + read589.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATTTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGATGAACAGTTTCGATCGCAGCTATGGGTTAAGCCCATAGATTTCACAGTCGACTTGCTCTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGCCACCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(18); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(27); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read589.setScores(scores); + rfastqReads.push_back(read589); + FastqRead read590; read590.setName("M00967_44_000000000-A3K85_1_1102_14989_2272"); + read590.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGAATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read590.setScores(scores); + rfastqReads.push_back(read590); + FastqRead read591; read591.setName("M00967_44_000000000-A3K85_1_1102_19817_2416"); + read591.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACACTCCCTTTACACCCCGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(24); read591.setScores(scores); + rfastqReads.push_back(read591); + FastqRead read592; read592.setName("M00967_44_000000000-A3K85_1_1102_15019_2584"); + read592.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); 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scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); read592.setScores(scores); + rfastqReads.push_back(read592); + FastqRead read593; read593.setName("M00967_44_000000000-A3K85_1_1102_15796_2608"); + read593.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); read593.setScores(scores); + rfastqReads.push_back(read593); + FastqRead read594; read594.setName("M00967_44_000000000-A3K85_1_1102_12309_2625"); + read594.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTTCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); read594.setScores(scores); + rfastqReads.push_back(read594); + FastqRead read595; read595.setName("M00967_44_000000000-A3K85_1_1102_13413_2661"); + read595.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); read595.setScores(scores); + rfastqReads.push_back(read595); + FastqRead read596; read596.setName("M00967_44_000000000-A3K85_1_1102_16937_2684"); + read596.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); 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scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); read597.setScores(scores); + rfastqReads.push_back(read597); + FastqRead read598; read598.setName("M00967_44_000000000-A3K85_1_1102_13140_2853"); + read598.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCAAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read598.setScores(scores); + rfastqReads.push_back(read598); + FastqRead read599; read599.setName("M00967_44_000000000-A3K85_1_1102_19576_3038"); + read599.setSeq("CATGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(32); scores.push_back(17); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); 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scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); read599.setScores(scores); + rfastqReads.push_back(read599); + FastqRead read600; read600.setName("M00967_44_000000000-A3K85_1_1102_20423_3046"); + read600.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCGCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGTTGCAGTTTTGGTTGCAATTACCGGTTGAGCCGATAGTTTAAACATCCAACTTGCATCCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCCTGCTCCCTACGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(20); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(19); scores.push_back(36); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(27); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(13); read600.setScores(scores); + rfastqReads.push_back(read600); + FastqRead read601; read601.setName("M00967_44_000000000-A3K85_1_1102_10386_3065"); + read601.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGGCCCGTCACTTGACCGCGCACTTGGCAACCCGCCCGCGCGCCCCTTAAAACCAATAAATCCGGATCACGCCCCCACCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(29); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read601.setScores(scores); + rfastqReads.push_back(read601); + FastqRead read602; read602.setName("M00967_44_000000000-A3K85_1_1102_12737_3153"); + read602.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(24); read602.setScores(scores); + rfastqReads.push_back(read602); + FastqRead read603; read603.setName("M00967_44_000000000-A3K85_1_1102_12269_3159"); + read603.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); 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scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); read603.setScores(scores); + rfastqReads.push_back(read603); + FastqRead read604; read604.setName("M00967_44_000000000-A3K85_1_1102_18606_3208"); + read604.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGGCTACGCCCCCCTTAAACCCAATAAATTCGGGTAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(29); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); read604.setScores(scores); + rfastqReads.push_back(read604); + FastqRead read605; read605.setName("M00967_44_000000000-A3K85_1_1102_15277_3213"); + read605.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTACAGTCCAGTAAGTCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCGAGCACAGCAGTATCAGAAGCAGCCCCGGGGTTAAGCCCCGATATTTCACTTCTGACTAACTGCGCCGCCTACGCACCCTTTACGCCCAGTAATTCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read605.setScores(scores); + rfastqReads.push_back(read605); + FastqRead read606; read606.setName("M00967_44_000000000-A3K85_1_1102_18014_3238"); + read606.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); read606.setScores(scores); + rfastqReads.push_back(read606); + FastqRead read607; read607.setName("M00967_44_000000000-A3K85_1_1102_12179_3242"); + read607.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGCAAATCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCATTTGCCCCTCCTGCACTCAAGTCCAACAGTTTTGGTAGTAGTGCCGAGGTTGAGCCCCGGAGTTACGCTACCAACTTGTCAAACCACCTACGCACCCTTTACGCCCAGTCATTCCGGATAACGCTTGCCTCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); read607.setScores(scores); + rfastqReads.push_back(read607); + FastqRead read608; read608.setName("M00967_44_000000000-A3K85_1_1102_10712_3282"); + read608.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATACGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read608.setScores(scores); + rfastqReads.push_back(read608); + FastqRead read609; read609.setName("M00967_44_000000000-A3K85_1_1102_14844_3406"); + read609.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); read610.setScores(scores); + rfastqReads.push_back(read610); + FastqRead read611; read611.setName("M00967_44_000000000-A3K85_1_1102_13989_3505"); + read611.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGTCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGGGGCCCGCGATTTTCCCGCTGACTTGGCAGGCCGCCTTCGCACCCTTTAAACCCAATAAATTCGGGTTAAGCCCGCGACCTCCG"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(37); 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scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); read611.setScores(scores); + rfastqReads.push_back(read611); + FastqRead read612; read612.setName("M00967_44_000000000-A3K85_1_1102_16208_3522"); + read612.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCACCGTCCAGTAATCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCGACACTCTAGACCGGCAGTTTCCAATGCAGTACCAGGGTTGAGCCCTGGGCTTTCACATCTGACTTGCCTTACCGGCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCACCATACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); read612.setScores(scores); + rfastqReads.push_back(read612); + FastqRead read613; read613.setName("M00967_44_000000000-A3K85_1_1102_22090_3602"); + read613.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read613.setScores(scores); + rfastqReads.push_back(read613); + FastqRead read614; read614.setName("M00967_44_000000000-A3K85_1_1102_12641_3607"); + read614.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGGTTTTACCGCTGACTTGAGAGTCCGCCTGGGCACCCCTTAAACCCAATAAATCCGGATAAAGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(29); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); read614.setScores(scores); + rfastqReads.push_back(read614); + FastqRead read615; read615.setName("M00967_44_000000000-A3K85_1_1102_20798_3675"); + read615.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); read615.setScores(scores); + rfastqReads.push_back(read615); + FastqRead read616; read616.setName("M00967_44_000000000-A3K85_1_1102_18863_3783"); + read616.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read616.setScores(scores); + rfastqReads.push_back(read616); + FastqRead read617; read617.setName("M00967_44_000000000-A3K85_1_1102_19748_4121"); + read617.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read617.setScores(scores); + rfastqReads.push_back(read617); + FastqRead read618; read618.setName("M00967_44_000000000-A3K85_1_1102_21130_4210"); + read618.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCACTAAATCCGGATAACGCTCGGATCATCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(18); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); read618.setScores(scores); + rfastqReads.push_back(read618); + FastqRead read619; read619.setName("M00967_44_000000000-A3K85_1_1102_15766_4244"); + read619.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGACCCCTTTAAACCCAATAAAACCGGATAAAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read619.setScores(scores); + rfastqReads.push_back(read619); + FastqRead read620; read620.setName("M00967_44_000000000-A3K85_1_1102_8055_4329"); + read620.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGACGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); 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scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(13); read620.setScores(scores); + rfastqReads.push_back(read620); + FastqRead read621; read621.setName("M00967_44_000000000-A3K85_1_1102_15291_4423"); + read621.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGAATTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read621.setScores(scores); + rfastqReads.push_back(read621); + FastqRead read622; read622.setName("M00967_44_000000000-A3K85_1_1102_18037_4545"); + read622.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAATCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCATTCTCCTCTCCTGCACTCTAGACTTCCAGTTTGAAATGCAGCACTCAAGTTGAGCCCGAGTATTTCACATCTCACTTAAAAGTCCGCCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTCGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(13); read623.setScores(scores); + rfastqReads.push_back(read623); + FastqRead read624; read624.setName("M00967_44_000000000-A3K85_1_1102_12406_4593"); + read624.setSeq("CCGGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACAGTTGACCGCTGACTTAAAAGCCCGGCTACTCACCCCTTAAACCCAAAAAATCCGGATAACGCTCCTCTCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); 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scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read624.setScores(scores); + rfastqReads.push_back(read624); + FastqRead read625; read625.setName("M00967_44_000000000-A3K85_1_1102_23086_4898"); + read625.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAATCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCATTCTCCTCTCCTGCACTCTAGACTTCCAGTTTGAAATGCAGCACTCAAGTTGAGCCCGAGTATTTCACATCTCACTTAAAAGTCCGCCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTCGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); read625.setScores(scores); + rfastqReads.push_back(read625); + FastqRead read626; read626.setName("M00967_44_000000000-A3K85_1_1102_17056_4962"); + read626.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCCGGGTTGAGCCCCCCAATTTTACCGCTTCACTGGCATCCCGCCCCCCCACCCTTTCAATCCAAAAAAACCCGATAACACCCCCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); read626.setScores(scores); + rfastqReads.push_back(read626); + FastqRead read627; read627.setName("M00967_44_000000000-A3K85_1_1102_11016_4996"); + read627.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); read627.setScores(scores); + rfastqReads.push_back(read627); + FastqRead read628; read628.setName("M00967_44_000000000-A3K85_1_1102_20868_5029"); + read628.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCTGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read628.setScores(scores); + rfastqReads.push_back(read628); + FastqRead read629; read629.setName("M00967_44_000000000-A3K85_1_1102_13273_5076"); + read629.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCAGTACTCTAGCCGCACAGTTTCCAGAGCAGTTCCGGGGTTGGGCCCCGGGCTTTCACTCCAGACTTGCACTGCCGTCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(13); read629.setScores(scores); + rfastqReads.push_back(read629); + FastqRead read630; read630.setName("M00967_44_000000000-A3K85_1_1102_11788_5082"); + read630.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(27); scores.push_back(28); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(29); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(35); read630.setScores(scores); + rfastqReads.push_back(read630); + FastqRead read631; read631.setName("M00967_44_000000000-A3K85_1_1102_9158_5092"); + read631.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCACCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCGGCACTCCAGCAGGGCAGTTCCCAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCAGGCTTGCCCCGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCATACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read631.setScores(scores); + rfastqReads.push_back(read631); + FastqRead read632; read632.setName("M00967_44_000000000-A3K85_1_1102_12218_5161"); + read632.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCCATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); read632.setScores(scores); + rfastqReads.push_back(read632); + FastqRead read633; read633.setName("M00967_44_000000000-A3K85_1_1102_22596_5397"); + read633.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read633.setScores(scores); + rfastqReads.push_back(read633); + FastqRead read634; read634.setName("M00967_44_000000000-A3K85_1_1102_10741_5416"); + read634.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCCCCATTTTCCCGCTGACTTTACCCTCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGATAAAGCTCCCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); read634.setScores(scores); + rfastqReads.push_back(read634); + FastqRead read635; read635.setName("M00967_44_000000000-A3K85_1_1102_10062_5454"); + read635.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACCCTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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+ scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(13); read636.setScores(scores); + rfastqReads.push_back(read636); + FastqRead read637; read637.setName("M00967_44_000000000-A3K85_1_1102_17733_5590"); + read637.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCTGCACTCCAGTCACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); read637.setScores(scores); + rfastqReads.push_back(read637); + FastqRead read638; read638.setName("M00967_44_000000000-A3K85_1_1102_16539_5621"); + read638.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read638.setScores(scores); + rfastqReads.push_back(read638); + FastqRead read639; read639.setName("M00967_44_000000000-A3K85_1_1102_15276_5626"); + read639.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTTTGCCCCCCAATTTGACCCCTGACTTAACGACCCGCCTACGCCCCCCTTAAAACCCACAAAACCGGATAAACCTCCCCTCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); read639.setScores(scores); + rfastqReads.push_back(read639); + FastqRead read640; read640.setName("M00967_44_000000000-A3K85_1_1102_13711_5675"); + read640.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read640.setScores(scores); + rfastqReads.push_back(read640); + FastqRead read641; read641.setName("M00967_44_000000000-A3K85_1_1102_22231_5761"); + read641.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); read641.setScores(scores); + rfastqReads.push_back(read641); + FastqRead read642; read642.setName("M00967_44_000000000-A3K85_1_1102_10893_5845"); + read642.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read642.setScores(scores); + rfastqReads.push_back(read642); + FastqRead read643; read643.setName("M00967_44_000000000-A3K85_1_1102_25295_5872"); + read643.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGAGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCTCTGACTTGAGAGTCCGCCCGCGCACCCTTTAAACCCCATACAACCGGGTAACGCCTGCCTTCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(20); scores.push_back(35); scores.push_back(33); scores.push_back(18); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); read643.setScores(scores); + rfastqReads.push_back(read643); + FastqRead read644; read644.setName("M00967_44_000000000-A3K85_1_1102_18117_5878"); + read644.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAAAGCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAGTTCCACTTACCTCTTCTGCACTCAAGTCTCCCAGTTTCCAATGCACTACTCCGGTTAAGCCCAAGCCTTTCACATCAGACTTAAAAGACCGCCTGCGATCCCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(29); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(14); scores.push_back(15); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(25); read644.setScores(scores); + rfastqReads.push_back(read644); + FastqRead read645; read645.setName("M00967_44_000000000-A3K85_1_1102_7293_5909"); + read645.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGCTCACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); 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scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read645.setScores(scores); + rfastqReads.push_back(read645); + FastqRead read646; read646.setName("M00967_44_000000000-A3K85_1_1102_7277_5920"); + read646.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCCTCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); 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scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); read646.setScores(scores); + rfastqReads.push_back(read646); + FastqRead read647; read647.setName("M00967_44_000000000-A3K85_1_1102_13142_5936"); + read647.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read647.setScores(scores); + rfastqReads.push_back(read647); + FastqRead read648; read648.setName("M00967_44_000000000-A3K85_1_1102_24962_5989"); + read648.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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read649.setName("M00967_44_000000000-A3K85_1_1102_24950_6004"); + read649.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTACCCCTCCCGCACTCCAGTTAGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCTCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); 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scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(12); read649.setScores(scores); + rfastqReads.push_back(read649); + FastqRead read650; read650.setName("M00967_44_000000000-A3K85_1_1102_6692_6022"); + read650.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTTAGCCTCTCAATTTTACCGCTGACTTGATCTTCCCCCTGCGCCCCCTTTAAACCCCATACCACCGGATAACGCTTCCACCCCAC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(18); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(17); scores.push_back(32); scores.push_back(16); scores.push_back(17); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); 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scores.push_back(27); scores.push_back(15); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(13); scores.push_back(28); scores.push_back(28); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(36); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(27); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(24); read650.setScores(scores); + rfastqReads.push_back(read650); + FastqRead read651; read651.setName("M00967_44_000000000-A3K85_1_1102_22660_6031"); + read651.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); 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scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); read652.setScores(scores); + rfastqReads.push_back(read652); + FastqRead read653; read653.setName("M00967_44_000000000-A3K85_1_1102_8646_6129"); + read653.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTTAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTCAACACAATAAATCCGGATAACGCTCCCATCAGCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(31); read653.setScores(scores); + rfastqReads.push_back(read653); + FastqRead read654; read654.setName("M00967_44_000000000-A3K85_1_1102_8651_6146"); + read654.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTCCCGCTGACTTGATCTTCCGCCTGCGCACCCTTTCAACCCCATAAATCCGGCTAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(27); scores.push_back(12); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(32); read654.setScores(scores); + rfastqReads.push_back(read654); + FastqRead read655; read655.setName("M00967_44_000000000-A3K85_1_1102_22820_6151"); + read655.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTCAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTACGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAACTCCAGTTTCAACGGCTCGAAAAGGTTGGGCCCCGCCATTTTCACCCTTAACTTGTCTTCCCCCCGCCCCCCCCTTTACCCCCATACATCCCGGTTACCCCCCCCCCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(16); 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scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read655.setScores(scores); + rfastqReads.push_back(read655); + FastqRead read656; read656.setName("M00967_44_000000000-A3K85_1_1102_11862_6197"); + read656.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(15); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read656.setScores(scores); + rfastqReads.push_back(read656); + FastqRead read657; read657.setName("M00967_44_000000000-A3K85_1_1102_19376_6262"); + read657.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCCGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(25); read657.setScores(scores); + rfastqReads.push_back(read657); + FastqRead read658; read658.setName("M00967_44_000000000-A3K85_1_1102_24376_6276"); + read658.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTCAGCCCCGACATTTGACCGCTGACTTAAAAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(13); read659.setScores(scores); + rfastqReads.push_back(read659); + FastqRead read660; read660.setName("M00967_44_000000000-A3K85_1_1102_5855_6301"); + read660.setSeq("CCTGATTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAAGAACAGTTTTGAACGCAGCTATGGGTTGAGCCCATAGATTTCACATTCAACTTATCCTCACGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(18); scores.push_back(33); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); read660.setScores(scores); + rfastqReads.push_back(read660); + FastqRead read661; read661.setName("M00967_44_000000000-A3K85_1_1102_8183_6353"); + read661.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTGTGGGTTGTGCCCCCAAATTTTACCGCCGCCTTGGCATCCCCCCTGCGCGCCCCTTAAACCCAATCAATCCGGGTAACGCGCGCTCCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); 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read662.setName("M00967_44_000000000-A3K85_1_1102_17008_6430"); + read662.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGTGGGGTGGCGCCCCCCAAGTTTACCCCTGACATGGCAACCCGCCTCAGCACCCCGTAAAACCAACAAAACATGTTAGAGCTGGCCTCCCCCC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(17); scores.push_back(38); 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scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); read662.setScores(scores); + rfastqReads.push_back(read662); + FastqRead read663; read663.setName("M00967_44_000000000-A3K85_1_1102_17025_6437"); + read663.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCAAATTTGACCCCTGACTTGGCCTCCCGCCCGCGCACCCCTTAAACCCAATAAATCCGGGTAACCCACCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(25); scores.push_back(13); read663.setScores(scores); + rfastqReads.push_back(read663); + FastqRead read664; read664.setName("M00967_44_000000000-A3K85_1_1102_25830_6492"); + read664.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read665.setScores(scores); + rfastqReads.push_back(read665); + FastqRead read666; read666.setName("M00967_44_000000000-A3K85_1_1102_10852_6503"); + read666.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGTATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read666.setScores(scores); + rfastqReads.push_back(read666); + FastqRead read667; read667.setName("M00967_44_000000000-A3K85_1_1102_7495_6588"); + read667.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCCGTTACGGGCCAGTAAGCCGCCTTCGCCACCGGTGCTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCAATCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACAACCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(31); scores.push_back(16); scores.push_back(33); scores.push_back(18); scores.push_back(16); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); 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scores.push_back(32); read667.setScores(scores); + rfastqReads.push_back(read667); + FastqRead read668; read668.setName("M00967_44_000000000-A3K85_1_1102_9313_6652"); + read668.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); read668.setScores(scores); + rfastqReads.push_back(read668); + FastqRead read669; read669.setName("M00967_44_000000000-A3K85_1_1102_12469_6758"); + read669.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); read669.setScores(scores); + rfastqReads.push_back(read669); + FastqRead read670; read670.setName("M00967_44_000000000-A3K85_1_1102_14602_6765"); + read670.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTTACCGCTGACTTAACAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGCAAACGCCCGCATCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); 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scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read670.setScores(scores); + rfastqReads.push_back(read670); + FastqRead read671; read671.setName("M00967_44_000000000-A3K85_1_1102_8840_6789"); + read671.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGCATTCCGCTTACCTCTCCTGCACTCGAGCTGCCCAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCCGCCTTGCGCTGCCGTCTACGCTCCCTTTACACCCCGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); read671.setScores(scores); + rfastqReads.push_back(read671); + FastqRead read672; read672.setName("M00967_44_000000000-A3K85_1_1102_10376_6801"); + read672.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(13); read672.setScores(scores); + rfastqReads.push_back(read672); + FastqRead read673; read673.setName("M00967_44_000000000-A3K85_1_1102_20079_6815"); + read673.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read673.setScores(scores); + rfastqReads.push_back(read673); + FastqRead read674; read674.setName("M00967_44_000000000-A3K85_1_1102_5451_6867"); + read674.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read674.setScores(scores); + rfastqReads.push_back(read674); + FastqRead read675; read675.setName("M00967_44_000000000-A3K85_1_1102_6027_6940"); + read675.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(32); read675.setScores(scores); + rfastqReads.push_back(read675); + FastqRead read676; read676.setName("M00967_44_000000000-A3K85_1_1102_10802_7033"); + read676.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); read676.setScores(scores); + rfastqReads.push_back(read676); + FastqRead read677; read677.setName("M00967_44_000000000-A3K85_1_1102_21042_7108"); + read677.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAACACCAGTTTCAACGGCTCGAAGGGGTTGAGCCTCTCAATTTTACCGCTGACTTGCACTTCCGCCTTCGCCCCCTTTTAACCCCATAAATCCGGCTAACACCCCCATCCCCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(16); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(32); 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scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); read678.setScores(scores); + rfastqReads.push_back(read678); + FastqRead read679; read679.setName("M00967_44_000000000-A3K85_1_1102_5813_7156"); + read679.setSeq("CCTGTTTTATCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCCCTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(18); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); read679.setScores(scores); + rfastqReads.push_back(read679); + FastqRead read680; read680.setName("M00967_44_000000000-A3K85_1_1102_13620_7266"); + read680.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read680.setScores(scores); + rfastqReads.push_back(read680); + FastqRead read681; read681.setName("M00967_44_000000000-A3K85_1_1102_23915_7313"); + read681.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACCTTTGACCGCTGACTTAACCGCCCGCCCACGCACCCTTTAAAACCAATAAATCCGGATAACCCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read681.setScores(scores); + rfastqReads.push_back(read681); + FastqRead read682; read682.setName("M00967_44_000000000-A3K85_1_1102_21602_7326"); + read682.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCCCCCTTTAAACCCAATAAAACCGGATAACGCCCGCATCCTCCGG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); read682.setScores(scores); + rfastqReads.push_back(read682); + FastqRead read683; read683.setName("M00967_44_000000000-A3K85_1_1102_23457_7422"); + read683.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCCATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read683.setScores(scores); + rfastqReads.push_back(read683); + FastqRead read684; read684.setName("M00967_44_000000000-A3K85_1_1102_6984_7487"); + read684.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(13); read684.setScores(scores); + rfastqReads.push_back(read684); + FastqRead read685; read685.setName("M00967_44_000000000-A3K85_1_1102_15177_7497"); + read685.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read685.setScores(scores); + rfastqReads.push_back(read685); + FastqRead read686; read686.setName("M00967_44_000000000-A3K85_1_1102_11679_7510"); + read686.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read686.setScores(scores); + rfastqReads.push_back(read686); + FastqRead read687; read687.setName("M00967_44_000000000-A3K85_1_1102_10886_7525"); + read687.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); read687.setScores(scores); + rfastqReads.push_back(read687); + FastqRead read688; read688.setName("M00967_44_000000000-A3K85_1_1102_7773_7574"); + read688.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(25); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read688.setScores(scores); + rfastqReads.push_back(read688); + FastqRead read689; read689.setName("M00967_44_000000000-A3K85_1_1102_9371_7687"); + read689.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCAGTACTCCAGCTTTACAGTTTCCAAAGCAGTTCCGCGGTTGAGCCACGGGCTTTCACTTCAGACTTGTACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAAAGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(32); read689.setScores(scores); + rfastqReads.push_back(read689); + FastqRead read690; read690.setName("M00967_44_000000000-A3K85_1_1102_7101_7694"); + read690.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCGATCTAGCAACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCATCGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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+ scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read691.setScores(scores); + rfastqReads.push_back(read691); + FastqRead read692; read692.setName("M00967_44_000000000-A3K85_1_1102_18183_7841"); + read692.setSeq("CCTGTTCGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCCCCCTA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read692.setScores(scores); + rfastqReads.push_back(read692); + FastqRead read693; read693.setName("M00967_44_000000000-A3K85_1_1102_17269_7866"); + read693.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); 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scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read694.setScores(scores); + rfastqReads.push_back(read694); + FastqRead read695; read695.setName("M00967_44_000000000-A3K85_1_1102_17540_7921"); + read695.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read695.setScores(scores); + rfastqReads.push_back(read695); + FastqRead read696; read696.setName("M00967_44_000000000-A3K85_1_1102_25724_7951"); + read696.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCCGCACTCTAGCTTAACAGTTTCCAAAGCAGTACCATGATTGAGCCTATGGCTTTCACATTCGGCTTGCAGCACCGTCTACGCTCCCTTTAAACCCAGTAAATCCGGATAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(18); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(12); read696.setScores(scores); + rfastqReads.push_back(read696); + FastqRead read697; read697.setName("M00967_44_000000000-A3K85_1_1102_25693_8060"); + read697.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read697.setScores(scores); + rfastqReads.push_back(read697); + FastqRead read698; read698.setName("M00967_44_000000000-A3K85_1_1102_11843_8065"); + read698.setSeq("CCTGTTGGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(19); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); read698.setScores(scores); + rfastqReads.push_back(read698); + FastqRead read699; read699.setName("M00967_44_000000000-A3K85_1_1102_20746_8081"); + read699.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); read699.setScores(scores); + rfastqReads.push_back(read699); + FastqRead read700; read700.setName("M00967_44_000000000-A3K85_1_1102_17852_8103"); + read700.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); 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scores.push_back(32); scores.push_back(29); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); read701.setScores(scores); + rfastqReads.push_back(read701); + FastqRead read702; read702.setName("M00967_44_000000000-A3K85_1_1102_12191_8252"); + read702.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGCGCCCCCACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGAAAAAGCTCGCACCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(12); read702.setScores(scores); + rfastqReads.push_back(read702); + FastqRead read703; read703.setName("M00967_44_000000000-A3K85_1_1102_21864_8263"); + read703.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCCTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTCTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); 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+ read704.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read704.setScores(scores); + rfastqReads.push_back(read704); + FastqRead read705; read705.setName("M00967_44_000000000-A3K85_1_1102_17029_8276"); + read705.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTCGCATCCTC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); read705.setScores(scores); + rfastqReads.push_back(read705); + FastqRead read706; read706.setName("M00967_44_000000000-A3K85_1_1102_24343_8332"); + read706.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTCCACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTAACTTCAGACTTACATAACCGTCTACCCTCCCTTTACACCCAGTAAATCCGGATAACCCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(35); read707.setScores(scores); + rfastqReads.push_back(read707); + FastqRead read708; read708.setName("M00967_44_000000000-A3K85_1_1102_20625_8391"); + read708.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); read708.setScores(scores); + rfastqReads.push_back(read708); + FastqRead read709; read709.setName("M00967_44_000000000-A3K85_1_1102_6857_8392"); + read709.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(13); read709.setScores(scores); + rfastqReads.push_back(read709); + FastqRead read710; read710.setName("M00967_44_000000000-A3K85_1_1102_19527_8470"); + read710.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read710.setScores(scores); + rfastqReads.push_back(read710); + FastqRead read711; read711.setName("M00967_44_000000000-A3K85_1_1102_22065_8478"); + read711.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(35); read711.setScores(scores); + rfastqReads.push_back(read711); + FastqRead read712; read712.setName("M00967_44_000000000-A3K85_1_1102_4377_8479"); + read712.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTACCAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGATCGGATCATCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(18); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(38); 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scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(29); scores.push_back(36); scores.push_back(31); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(27); scores.push_back(29); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(12); read712.setScores(scores); + rfastqReads.push_back(read712); + FastqRead read713; read713.setName("M00967_44_000000000-A3K85_1_1102_7046_8528"); + read713.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCGCACGCCGGTATGCTGCCTTCGCAACCGGAGTTCCGCGTGATATCTATGCATTTCACCGCTACACCAGGCATTCCGCCTACTTCTCCCCCACTCCAGGCCGCCAGTTTCAACGGCAGGCCCGGGGTGGGCCCCCACCCTTGCCCGCCGACCTAGCCGCGCCGCTAAGCCCCCCTTTACCCCCATAAAACCCGGAAACGCCCTGCCCCCTCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(13); read714.setScores(scores); + rfastqReads.push_back(read714); + FastqRead read715; read715.setName("M00967_44_000000000-A3K85_1_1102_26417_8599"); + read715.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(28); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read715.setScores(scores); + rfastqReads.push_back(read715); + FastqRead read716; read716.setName("M00967_44_000000000-A3K85_1_1102_20939_8613"); + read716.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); 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scores.push_back(26); read716.setScores(scores); + rfastqReads.push_back(read716); + FastqRead read717; read717.setName("M00967_44_000000000-A3K85_1_1102_19113_8714"); + read717.setSeq("CCCGTTTGCTCCCTACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read717.setScores(scores); + rfastqReads.push_back(read717); + FastqRead read718; read718.setName("M00967_44_000000000-A3K85_1_1102_6254_8779"); + read718.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCCGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTCCGCTCCCTTTCCACCCCGTAAATCCGGCTAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); read718.setScores(scores); + rfastqReads.push_back(read718); + FastqRead read719; read719.setName("M00967_44_000000000-A3K85_1_1102_17348_8932"); + read719.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCTGCTCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTCGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read720.setScores(scores); + rfastqReads.push_back(read720); + FastqRead read721; read721.setName("M00967_44_000000000-A3K85_1_1102_13366_8999"); + read721.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read721.setScores(scores); + rfastqReads.push_back(read721); + FastqRead read722; read722.setName("M00967_44_000000000-A3K85_1_1102_22033_9031"); + read722.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACCCCCTACTTGCGCTGCCGGCCACCCTCCCCTTCCACCCCGTAAATCCGGATAACCCCTGCCCCCCTC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); read722.setScores(scores); + rfastqReads.push_back(read722); + FastqRead read723; read723.setName("M00967_44_000000000-A3K85_1_1102_20668_9045"); + read723.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read723.setScores(scores); + rfastqReads.push_back(read723); + FastqRead read724; read724.setName("M00967_44_000000000-A3K85_1_1102_10984_9115"); + read724.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read724.setScores(scores); + rfastqReads.push_back(read724); + FastqRead read725; read725.setName("M00967_44_000000000-A3K85_1_1102_14833_9169"); + read725.setSeq("CCTGTTTTCTACCCACGTTTTGGAGCCCGGGGGTCCGTAAAAGCCCAGCTGCCCGCCCTCTCCACCGGCATTCCTCGTAAAATCCACGCATTCCACCGCCACCCCAGGAATTCCTCCTACTACTAATGCACTCTACCAGAACACTTTTGAATCCAGCTGTGTGTTGAGCCCATAGATTTAACAGTTTACTAAGACTCCCGTCTACGCTCCCTTTACACCCACTATCTCCGTATACCCCCGGCTCCTCACC"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(31); scores.push_back(18); scores.push_back(16); scores.push_back(18); scores.push_back(16); scores.push_back(18); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(33); scores.push_back(29); scores.push_back(34); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(17); scores.push_back(29); scores.push_back(16); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(15); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(28); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(27); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read725.setScores(scores); + rfastqReads.push_back(read725); + FastqRead read726; read726.setName("M00967_44_000000000-A3K85_1_1102_7268_9245"); + read726.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(29); scores.push_back(28); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(13); read726.setScores(scores); + rfastqReads.push_back(read726); + FastqRead read727; read727.setName("M00967_44_000000000-A3K85_1_1102_25304_9280"); + read727.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCCCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATACCGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(13); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(28); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(12); read727.setScores(scores); + rfastqReads.push_back(read727); + FastqRead read728; read728.setName("M00967_44_000000000-A3K85_1_1102_19256_9368"); + read728.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read728.setScores(scores); + rfastqReads.push_back(read728); + FastqRead read729; read729.setName("M00967_44_000000000-A3K85_1_1102_7643_9381"); + read729.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCCGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTAAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(25); read729.setScores(scores); + rfastqReads.push_back(read729); + FastqRead read730; read730.setName("M00967_44_000000000-A3K85_1_1102_20682_9443"); + read730.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCCACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCAACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(28); scores.push_back(26); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(13); read730.setScores(scores); + rfastqReads.push_back(read730); + FastqRead read731; read731.setName("M00967_44_000000000-A3K85_1_1102_19543_9447"); + read731.setSeq("CCTGTTCGATACCCACGCTTTCGAACCTCAGCGTCAGTTACAGACCAGAGAGCCGCTTTCGCCACTGGTGTTCTTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTCTCCCAGTTTCCAATGCACTACTCCGGTTAAGCCGAAGGCTTTCACATCAGACTTAAAAGACCGCCTGCGTTCCCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read731.setScores(scores); + rfastqReads.push_back(read731); + FastqRead read732; read732.setName("M00967_44_000000000-A3K85_1_1102_18694_9494"); + read732.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); read732.setScores(scores); + rfastqReads.push_back(read732); + FastqRead read733; read733.setName("M00967_44_000000000-A3K85_1_1102_18420_9540"); + read733.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGACAAGAAGTTTTGAACGCAGCTACCAGTTAAGCCGGTAGATTTAACATTCAACTTTCTCGCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGGATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); read733.setScores(scores); + rfastqReads.push_back(read733); + FastqRead read734; read734.setName("M00967_44_000000000-A3K85_1_1102_4744_9626"); + read734.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read734.setScores(scores); + rfastqReads.push_back(read734); + FastqRead read735; read735.setName("M00967_44_000000000-A3K85_1_1102_9458_9627"); + read735.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read735.setScores(scores); + rfastqReads.push_back(read735); + FastqRead read736; read736.setName("M00967_44_000000000-A3K85_1_1102_5989_9637"); + read736.setSeq("CCTGTTCGATACCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCTATACAGTTTCCAAAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTTCAGACTTGCATCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); read736.setScores(scores); + rfastqReads.push_back(read736); + FastqRead read737; read737.setName("M00967_44_000000000-A3K85_1_1102_15746_9659"); + read737.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(15); scores.push_back(24); scores.push_back(13); read737.setScores(scores); + rfastqReads.push_back(read737); + FastqRead read738; read738.setName("M00967_44_000000000-A3K85_1_1102_14621_9663"); + read738.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read738.setScores(scores); + rfastqReads.push_back(read738); + FastqRead read739; read739.setName("M00967_44_000000000-A3K85_1_1102_27457_9673"); + read739.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCTTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCAAGCCCTACAGTTTCAAAAGCAGTTCACGGGTTAAGCCCATGGATTTCACTTCTGACTTGCAAGGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read739.setScores(scores); + rfastqReads.push_back(read739); + FastqRead read740; read740.setName("M00967_44_000000000-A3K85_1_1102_24895_9705"); + read740.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAAAGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGAATTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(19); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(36); 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scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(27); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read740.setScores(scores); + rfastqReads.push_back(read740); + FastqRead read741; read741.setName("M00967_44_000000000-A3K85_1_1102_13149_9739"); + read741.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTCCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTCCACAGTTTCCAATGCCGTTCCCCGGTTAAGCCACGGGCTTTCACTTCTAACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(33); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(27); scores.push_back(29); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(12); read741.setScores(scores); + rfastqReads.push_back(read741); + FastqRead read742; read742.setName("M00967_44_000000000-A3K85_1_1102_15403_9761"); + read742.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCACTCCCGGGGCTGAGCCCCGGGTTTTCACATCTGACTTGCCCTGCCACCTACGCTCCCTTTACCCCCAGTAAATCGGGTTAAGGCTTGCCCCTTACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(16); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(14); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read743.setScores(scores); + rfastqReads.push_back(read743); + FastqRead read744; read744.setName("M00967_44_000000000-A3K85_1_1102_27984_9822"); + read744.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTTTGCTGCCTTCGCCATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCACTTTTCCCGATGGCTTGGCTAGCCCCCCAAGGCCCCTTTAAACCCCATCAATCCGGAACAAGCCCGCATCCCTCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); read744.setScores(scores); + rfastqReads.push_back(read744); + FastqRead read745; read745.setName("M00967_44_000000000-A3K85_1_1102_26268_9892"); + read745.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTTCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTGCCTCTCCGATACTCTAGTTCTACAGTTTCCAATGCACTCCCACAGTTGAGCCGTGGGCTTTCACATCAGACTTGTACAACCGTCTACGCTCCCTTTACACCCAGTCATTCCGGATAACGCTTGCACCATACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ FastqRead read746; read746.setName("M00967_44_000000000-A3K85_1_1102_9375_9903"); + read746.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read746.setScores(scores); + rfastqReads.push_back(read746); + FastqRead read747; read747.setName("M00967_44_000000000-A3K85_1_1102_19323_9925"); + read747.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read747.setScores(scores); + rfastqReads.push_back(read747); + FastqRead read748; read748.setName("M00967_44_000000000-A3K85_1_1102_26447_9991"); + read748.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); read748.setScores(scores); + rfastqReads.push_back(read748); + FastqRead read749; read749.setName("M00967_44_000000000-A3K85_1_1102_24734_9991"); + read749.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); read749.setScores(scores); + rfastqReads.push_back(read749); + FastqRead read750; read750.setName("M00967_44_000000000-A3K85_1_1102_11474_10097"); + read750.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTCCACAGTTTCCAAAGCAGTCCCAGGGTTGAGCCCTGGGCTTTCACTTCAGACTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read750.setScores(scores); + rfastqReads.push_back(read750); + FastqRead read751; read751.setName("M00967_44_000000000-A3K85_1_1102_3404_10151"); + read751.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGCATTCCGCCTACCTCTCCCGCACTCTAGCTTCACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTCGGCTTTAACTTCAGACTTGCAATGCCGTCTACGCTCCCTTTACACCACGTAAATCCGGATAAGCCTTGCCCCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(20); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(17); scores.push_back(15); scores.push_back(33); scores.push_back(30); scores.push_back(17); scores.push_back(30); scores.push_back(33); scores.push_back(17); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(29); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(27); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(34); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read751.setScores(scores); + rfastqReads.push_back(read751); + FastqRead read752; read752.setName("M00967_44_000000000-A3K85_1_1102_27873_10257"); + read752.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read752.setScores(scores); + rfastqReads.push_back(read752); + FastqRead read753; read753.setName("M00967_44_000000000-A3K85_1_1102_10760_10258"); + read753.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read753.setScores(scores); + rfastqReads.push_back(read753); + FastqRead read754; read754.setName("M00967_44_000000000-A3K85_1_1102_14134_10326"); + read754.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); read754.setScores(scores); + rfastqReads.push_back(read754); + FastqRead read755; read755.setName("M00967_44_000000000-A3K85_1_1102_17936_10334"); + read755.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCATCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read757.setScores(scores); + rfastqReads.push_back(read757); + FastqRead read758; read758.setName("M00967_44_000000000-A3K85_1_1102_16497_10489"); + read758.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); read758.setScores(scores); + rfastqReads.push_back(read758); + FastqRead read759; read759.setName("M00967_44_000000000-A3K85_1_1102_18361_10509"); + read759.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); read759.setScores(scores); + rfastqReads.push_back(read759); + FastqRead read760; read760.setName("M00967_44_000000000-A3K85_1_1102_22232_10552"); + read760.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); read760.setScores(scores); + rfastqReads.push_back(read760); + FastqRead read761; read761.setName("M00967_44_000000000-A3K85_1_1102_18980_10587"); + read761.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCGAAATTTGACCGCTGACTTGGCATCCCGCCGGCGCGCCCTTTAAAAACAATAAATCCGGGTAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read761.setScores(scores); + rfastqReads.push_back(read761); + FastqRead read762; read762.setName("M00967_44_000000000-A3K85_1_1102_27674_10618"); + read762.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); read762.setScores(scores); + rfastqReads.push_back(read762); + FastqRead read763; read763.setName("M00967_44_000000000-A3K85_1_1102_5578_10651"); + read763.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATATCTACGCATTTCACCGCTACACACGGAATTCCGCCTGCCTCTCCATCACTCAAGAACTACAGTTTCAAATGCAGGCCATGGGTTGAGCCCATGGGTTTCACATCTGACTTGCAGTCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(25); read763.setScores(scores); + rfastqReads.push_back(read763); + FastqRead read764; read764.setName("M00967_44_000000000-A3K85_1_1102_14339_10656"); + read764.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(28); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(25); read764.setScores(scores); + rfastqReads.push_back(read764); + FastqRead read765; read765.setName("M00967_44_000000000-A3K85_1_1102_3035_10716"); + read765.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(33); 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scores.push_back(13); read765.setScores(scores); + rfastqReads.push_back(read765); + FastqRead read766; read766.setName("M00967_44_000000000-A3K85_1_1102_9527_10736"); + read766.setSeq("TCTGCGCGAAACAAACGCTTTGGCGCATGCGCGACCGTTGCGCGCCGGTAGGACGCGTTCGCATTCGTAGTGCTGCGTGACATGCACGCATGTCGCACTTCAACTCCGCATTCCGCGTGCGGTTCGCGCATTTACGGCTCACAGCATCAACGCCGGCACGTTCTCGCGCCCCCCCGGCTGCCCCTTGCATGCGGGGTCGGGGCGCGGGCACCTCCAACTGCACGATGGCGTACTCAGCAGCCAGCCTAAG"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(15); scores.push_back(29); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(16); scores.push_back(14); 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scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); read766.setScores(scores); + rfastqReads.push_back(read766); + FastqRead read767; read767.setName("M00967_44_000000000-A3K85_1_1102_27194_10763"); + read767.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCCTTAAACCCCATAAATCCGGATAAAGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); read767.setScores(scores); + rfastqReads.push_back(read767); + FastqRead read768; read768.setName("M00967_44_000000000-A3K85_1_1102_18980_10780"); + read768.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); read769.setScores(scores); + rfastqReads.push_back(read769); + FastqRead read770; read770.setName("M00967_44_000000000-A3K85_1_1102_7354_10796"); + read770.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read770.setScores(scores); + rfastqReads.push_back(read770); + FastqRead read771; read771.setName("M00967_44_000000000-A3K85_1_1102_28754_10878"); + read771.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read771.setScores(scores); + rfastqReads.push_back(read771); + FastqRead read772; read772.setName("M00967_44_000000000-A3K85_1_1102_20648_10881"); + read772.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCGAGCACAGCAGTATCAGAAGCAGCCCCGGGGTTAAGCCCCGATATTTCACTTCTGACTAACTGCGCCGCCTACGCACCCTTTAAGCCCAGTAATTCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); read772.setScores(scores); + rfastqReads.push_back(read772); + FastqRead read773; read773.setName("M00967_44_000000000-A3K85_1_1102_18164_10943"); + read773.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); read773.setScores(scores); + rfastqReads.push_back(read773); + FastqRead read774; read774.setName("M00967_44_000000000-A3K85_1_1102_13528_10956"); + read774.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); read774.setScores(scores); + rfastqReads.push_back(read774); + FastqRead read775; read775.setName("M00967_44_000000000-A3K85_1_1102_7988_10976"); + read775.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); read775.setScores(scores); + rfastqReads.push_back(read775); + FastqRead read776; read776.setName("M00967_44_000000000-A3K85_1_1102_21910_11076"); + read776.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read776.setScores(scores); + rfastqReads.push_back(read776); + FastqRead read777; read777.setName("M00967_44_000000000-A3K85_1_1102_22267_11082"); + read777.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read777.setScores(scores); + rfastqReads.push_back(read777); + FastqRead read778; read778.setName("M00967_44_000000000-A3K85_1_1102_3732_11179"); + read778.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACCCTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); 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scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); read778.setScores(scores); + rfastqReads.push_back(read778); + FastqRead read779; read779.setName("M00967_44_000000000-A3K85_1_1102_23128_11191"); + read779.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read779.setScores(scores); + rfastqReads.push_back(read779); + FastqRead read780; read780.setName("M00967_44_000000000-A3K85_1_1102_17762_11301"); + read780.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTCCGCAATCGGGGTTCTGCATGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); read780.setScores(scores); + rfastqReads.push_back(read780); + FastqRead read781; read781.setName("M00967_44_000000000-A3K85_1_1102_23257_11367"); + read781.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATACTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCCATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(13); read781.setScores(scores); + rfastqReads.push_back(read781); + FastqRead read782; read782.setName("M00967_44_000000000-A3K85_1_1102_18932_11393"); + read782.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(36); 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scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read782.setScores(scores); + rfastqReads.push_back(read782); + FastqRead read783; read783.setName("M00967_44_000000000-A3K85_1_1102_28272_11398"); + read783.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read783.setScores(scores); + rfastqReads.push_back(read783); + FastqRead read784; read784.setName("M00967_44_000000000-A3K85_1_1102_4509_11442"); + read784.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGACCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); 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scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); read785.setScores(scores); + rfastqReads.push_back(read785); + FastqRead read786; read786.setName("M00967_44_000000000-A3K85_1_1102_20509_11465"); + read786.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTTACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCCTCCCCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(12); read786.setScores(scores); + rfastqReads.push_back(read786); + FastqRead read787; read787.setName("M00967_44_000000000-A3K85_1_1102_26039_11489"); + read787.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); read787.setScores(scores); + rfastqReads.push_back(read787); + FastqRead read788; read788.setName("M00967_44_000000000-A3K85_1_1102_7342_11561"); + read788.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); read788.setScores(scores); + rfastqReads.push_back(read788); + FastqRead read789; read789.setName("M00967_44_000000000-A3K85_1_1102_20742_11581"); + read789.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCCTTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(14); scores.push_back(27); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); read789.setScores(scores); + rfastqReads.push_back(read789); + FastqRead read790; read790.setName("M00967_44_000000000-A3K85_1_1102_19188_11683"); + read790.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(25); read790.setScores(scores); + rfastqReads.push_back(read790); + FastqRead read791; read791.setName("M00967_44_000000000-A3K85_1_1102_11109_11761"); + read791.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); read791.setScores(scores); + rfastqReads.push_back(read791); + FastqRead read792; read792.setName("M00967_44_000000000-A3K85_1_1102_25070_11786"); + read792.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCCCAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACCCCCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); 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scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(30); scores.push_back(28); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); read792.setScores(scores); + rfastqReads.push_back(read792); + FastqRead read793; read793.setName("M00967_44_000000000-A3K85_1_1102_4602_11807"); + read793.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read793.setScores(scores); + rfastqReads.push_back(read793); + FastqRead read794; read794.setName("M00967_44_000000000-A3K85_1_1102_19082_11813"); + read794.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACACCTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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+ FastqRead read795; read795.setName("M00967_44_000000000-A3K85_1_1102_21891_11869"); + read795.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read795.setScores(scores); + rfastqReads.push_back(read795); + FastqRead read796; read796.setName("M00967_44_000000000-A3K85_1_1102_8531_11870"); + read796.setSeq("CCTGTTTGATCCCCACGCTTTCGCGCCTCACCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAAAACAGTTTCAAATGCAATTTGGAGGTTGAGCCTCCAGATTTCACATCTGACTTGCCTTCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read796.setScores(scores); + rfastqReads.push_back(read796); + FastqRead read797; read797.setName("M00967_44_000000000-A3K85_1_1102_28700_11964"); + read797.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGCGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); 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scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); read797.setScores(scores); + rfastqReads.push_back(read797); + FastqRead read798; read798.setName("M00967_44_000000000-A3K85_1_1102_10402_12045"); + read798.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGGACACCAGTTTCAACGGCCGGACGGGGTTGAGCCCCCAAATTTTACCGCTGAATTGAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(26); read798.setScores(scores); + rfastqReads.push_back(read798); + FastqRead read799; read799.setName("M00967_44_000000000-A3K85_1_1102_22668_12078"); + read799.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACCGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACCCGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGACCCCATAGTTTTAACATCTGACTTGCATCCCCGCCTACACCCCCTTAACACCCATTAAATCGGGAAAACCCCTCCCCCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(38); scores.push_back(15); scores.push_back(29); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(16); scores.push_back(27); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(15); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(13); scores.push_back(15); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read799.setScores(scores); + rfastqReads.push_back(read799); + FastqRead read800; read800.setName("M00967_44_000000000-A3K85_1_1102_28276_12186"); + read800.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTCACCTCTCCTGCACTCCAGTCACCTAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGCCTTACATCACCGTCTCCGCTCCCTTTACCCCCAGTAATTCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(32); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); read800.setScores(scores); + rfastqReads.push_back(read800); + FastqRead read801; read801.setName("M00967_44_000000000-A3K85_1_1102_27651_12192"); + read801.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGAGCCCCGCAATTTTACCGCTGACTTGGCATCCCGCCTGCGCACCCCTTTAACCCAATAAAACCGGGTAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); read801.setScores(scores); + rfastqReads.push_back(read801); + FastqRead read802; read802.setName("M00967_44_000000000-A3K85_1_1102_23824_12195"); + read802.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); read802.setScores(scores); + rfastqReads.push_back(read802); + FastqRead read803; read803.setName("M00967_44_000000000-A3K85_1_1102_22152_12255"); + read803.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGGTGGGGCCCGGCTTTTTTTCGCTGCCTTTACAAACCGCCCCCGCACCCCTTCATACCACTCAATCCAGATAACGCACACACCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); read803.setScores(scores); + rfastqReads.push_back(read803); + FastqRead read804; read804.setName("M00967_44_000000000-A3K85_1_1102_12591_12295"); + read804.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(35); read805.setScores(scores); + rfastqReads.push_back(read805); + FastqRead read806; read806.setName("M00967_44_000000000-A3K85_1_1102_19760_12313"); + read806.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read806.setScores(scores); + rfastqReads.push_back(read806); + FastqRead read807; read807.setName("M00967_44_000000000-A3K85_1_1102_11332_12337"); + read807.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGAAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read807.setScores(scores); + rfastqReads.push_back(read807); + FastqRead read808; read808.setName("M00967_44_000000000-A3K85_1_1102_21714_12340"); + read808.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read808.setScores(scores); + rfastqReads.push_back(read808); + FastqRead read809; read809.setName("M00967_44_000000000-A3K85_1_1102_4985_12360"); + read809.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGGCGGGGGTGGGCCCCGACATTTGTCCGCTTACTTAACAGCCCTCCTACGCCCCCTTTTAACCCAATAAATCCGCTTAACGTTCGCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(15); 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scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read809.setScores(scores); + rfastqReads.push_back(read809); + FastqRead read810; read810.setName("M00967_44_000000000-A3K85_1_1102_4337_12433"); + read810.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGACCCGCAATTTTACCGCTGACTTAACGGACCGCCTCCGCCCCCTTTAAACCCACTAACTCCGGGTAACGCTCGCCTCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); read811.setScores(scores); + rfastqReads.push_back(read811); + FastqRead read812; read812.setName("M00967_44_000000000-A3K85_1_1102_2789_12538"); + read812.setSeq("CCTGTTAGATCCCCGCACTTTTGTGCCTCAGCGTCAGTAGGGCGCCGGACGGCTGCCTTCGCAATCGGGGTTCTGCGTGATCTCCCTGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCAACTCAAGGCCCACAGTTTCAACGGCCGGACGGGGTTGAGCCACGAATTTTCACCGCTGAATTACAAGCCCGCCTTCGCAGCCTTTCAAACCAATAACTCCGGCAACCGGTGCCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(16); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(31); scores.push_back(18); 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scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(24); read812.setScores(scores); + rfastqReads.push_back(read812); + FastqRead read813; read813.setName("M00967_44_000000000-A3K85_1_1102_10294_12597"); + read813.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTTACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); read813.setScores(scores); + rfastqReads.push_back(read813); + FastqRead read814; read814.setName("M00967_44_000000000-A3K85_1_1102_5819_12607"); + read814.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCGCGCAGTTCCAAGAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTCCTGGCTTGCGCTGCCGGCTGCGCCCCCTTTACACCCCGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(13); read814.setScores(scores); + rfastqReads.push_back(read814); + FastqRead read815; read815.setName("M00967_44_000000000-A3K85_1_1102_7829_12633"); + read815.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCCACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCCAATTTTTACCGCTGACTTAAAAGCCCGCCTTCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); read815.setScores(scores); + rfastqReads.push_back(read815); + FastqRead read816; read816.setName("M00967_44_000000000-A3K85_1_1102_18246_12643"); + read816.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(13); read816.setScores(scores); + rfastqReads.push_back(read816); + FastqRead read817; read817.setName("M00967_44_000000000-A3K85_1_1102_22647_12655"); + read817.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read817.setScores(scores); + rfastqReads.push_back(read817); + FastqRead read818; read818.setName("M00967_44_000000000-A3K85_1_1102_7783_12688"); + read818.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCCATTTTACCGCTGACTTAACGGACCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(28); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read818.setScores(scores); + rfastqReads.push_back(read818); + FastqRead read819; read819.setName("M00967_44_000000000-A3K85_1_1102_10234_12715"); + read819.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(31); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read819.setScores(scores); + rfastqReads.push_back(read819); + FastqRead read820; read820.setName("M00967_44_000000000-A3K85_1_1102_28486_12725"); + read820.setSeq("ACTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAATCGGGCGCCGGTATGCTGACTTCGCAATCGGGGTTCCGCGCGCTATCTATGCCTTTCACCGCTACACCACGCATTCCACATACTTCTTGCCCACTCGAGCCCGGCAGCTTCAATGGCTGTCCGGGGTTGAGCCCCGCAATCTTCCCGCTGACCTGGCAGGCCGCCCACTGCCCTTTTCATCCCAAGACATCGGGCTCACGCTCGCACCCTCC"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(18); scores.push_back(18); scores.push_back(16); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(32); scores.push_back(36); 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scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); read820.setScores(scores); + rfastqReads.push_back(read820); + FastqRead read821; read821.setName("M00967_44_000000000-A3K85_1_1102_19918_12759"); + read821.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTAATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATTACCTCTCCCACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read821.setScores(scores); + rfastqReads.push_back(read821); + FastqRead read822; read822.setName("M00967_44_000000000-A3K85_1_1102_22796_12761"); + read822.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCAGTACTCTAGCCGCACAGTTTCCAGAGCAGTTCCGGGGTTGGGCCCCGGGCTTTCACTCCAGACTTGCACTGCCGTCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); read822.setScores(scores); + rfastqReads.push_back(read822); + FastqRead read823; read823.setName("M00967_44_000000000-A3K85_1_1102_9947_12767"); + read823.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); read824.setScores(scores); + rfastqReads.push_back(read824); + FastqRead read825; read825.setName("M00967_44_000000000-A3K85_1_1102_7527_12804"); + read825.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAGTACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCACTCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read825.setScores(scores); + rfastqReads.push_back(read825); + FastqRead read826; read826.setName("M00967_44_000000000-A3K85_1_1102_8853_12872"); + read826.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGCCTTGCACAACCGTCTACGCCCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(13); read826.setScores(scores); + rfastqReads.push_back(read826); + FastqRead read827; read827.setName("M00967_44_000000000-A3K85_1_1102_23994_12951"); + read827.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read827.setScores(scores); + rfastqReads.push_back(read827); + FastqRead read828; read828.setName("M00967_44_000000000-A3K85_1_1102_17155_13072"); + read828.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGCACGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGGGCCCCCCAATTTTCACGCTTGCTTGAACTTTCGCCTTCGCAACCCTTTAACCCAATAAATCCGGGTTACCCTCCCGACCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(20); scores.push_back(19); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(18); scores.push_back(32); scores.push_back(17); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); read828.setScores(scores); + rfastqReads.push_back(read828); + FastqRead read829; read829.setName("M00967_44_000000000-A3K85_1_1102_29263_13137"); + read829.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(18); scores.push_back(33); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read829.setScores(scores); + rfastqReads.push_back(read829); + FastqRead read830; read830.setName("M00967_44_000000000-A3K85_1_1102_17440_13173"); + read830.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGGGCCCCCCCATTTTATCGCCATCTTTACTTTCCCCCTACGCACCCCTTTAAACCAATAAATCCCGAAAAACATCGCCTCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); read830.setScores(scores); + rfastqReads.push_back(read830); + FastqRead read831; read831.setName("M00967_44_000000000-A3K85_1_1102_23074_13203"); + read831.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGATCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); read831.setScores(scores); + rfastqReads.push_back(read831); + FastqRead read832; read832.setName("M00967_44_000000000-A3K85_1_1102_25216_13217"); + read832.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGCCCCCACAATTTACCGCTGACTTGGCATCCCCCCCGCGCCCCCCTTTAACCCAAAAAATCCCGGGAACGCCCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read832.setScores(scores); + rfastqReads.push_back(read832); + FastqRead read833; read833.setName("M00967_44_000000000-A3K85_1_1102_14731_13237"); + read833.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATCTCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGACAGTTTCAACGGCGGGACCCGGGTTAGCCCCGGATTTTTTTCTCTTAACTTGCTAAACCCACACCGCCCCCTTTACACCACATCATTCCGAACAATGACTCCTCCCCA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); 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scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read834.setScores(scores); + rfastqReads.push_back(read834); + FastqRead read835; read835.setName("M00967_44_000000000-A3K85_1_1102_4713_13363"); + read835.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read835.setScores(scores); + rfastqReads.push_back(read835); + FastqRead read836; read836.setName("M00967_44_000000000-A3K85_1_1102_12240_13465"); + read836.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); read836.setScores(scores); + rfastqReads.push_back(read836); + FastqRead read837; read837.setName("M00967_44_000000000-A3K85_1_1102_29304_13515"); + read837.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGGGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCAAGAACCCTTTAAACCCAATAAATCCGGGTAACGCTTGCCCCCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(26); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); read837.setScores(scores); + rfastqReads.push_back(read837); + FastqRead read838; read838.setName("M00967_44_000000000-A3K85_1_1102_18822_13540"); + read838.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCCGTACAGTTCCCAAAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTTCAGGCTTGCTCAGCCGTCTACGCTCCCTTTACACCCAGTGATTCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(31); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); read838.setScores(scores); + rfastqReads.push_back(read838); + FastqRead read839; read839.setName("M00967_44_000000000-A3K85_1_1102_16321_13542"); + read839.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGCGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read839.setScores(scores); + rfastqReads.push_back(read839); + FastqRead read840; read840.setName("M00967_44_000000000-A3K85_1_1102_16575_13610"); + read840.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(25); read840.setScores(scores); + rfastqReads.push_back(read840); + FastqRead read841; read841.setName("M00967_44_000000000-A3K85_1_1102_20301_13616"); + read841.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read841.setScores(scores); + rfastqReads.push_back(read841); + FastqRead read842; read842.setName("M00967_44_000000000-A3K85_1_1102_21446_13693"); + read842.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read842.setScores(scores); + rfastqReads.push_back(read842); + FastqRead read843; read843.setName("M00967_44_000000000-A3K85_1_1102_26513_13699"); + read843.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); read843.setScores(scores); + rfastqReads.push_back(read843); + FastqRead read844; read844.setName("M00967_44_000000000-A3K85_1_1102_27495_13700"); + read844.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTTACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read844.setScores(scores); + rfastqReads.push_back(read844); + FastqRead read845; read845.setName("M00967_44_000000000-A3K85_1_1102_19173_13708"); + read845.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); read845.setScores(scores); + rfastqReads.push_back(read845); + FastqRead read846; read846.setName("M00967_44_000000000-A3K85_1_1102_5288_13737"); + read846.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTCAATCCGGCTAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); read847.setScores(scores); + rfastqReads.push_back(read847); + FastqRead read848; read848.setName("M00967_44_000000000-A3K85_1_1102_6165_13769"); + read848.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read848.setScores(scores); + rfastqReads.push_back(read848); + FastqRead read849; read849.setName("M00967_44_000000000-A3K85_1_1102_28634_13773"); + read849.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGCACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(30); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); read849.setScores(scores); + rfastqReads.push_back(read849); + FastqRead read850; read850.setName("M00967_44_000000000-A3K85_1_1102_21299_13774"); + read850.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); read850.setScores(scores); + rfastqReads.push_back(read850); + FastqRead read851; read851.setName("M00967_44_000000000-A3K85_1_1102_10489_13896"); + read851.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCACTGACTTGATCTTCCGCCTGCGCCCCCTTTAAACCCAATAAATCCCGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(34); scores.push_back(27); scores.push_back(34); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read851.setScores(scores); + rfastqReads.push_back(read851); + FastqRead read852; read852.setName("M00967_44_000000000-A3K85_1_1102_9531_13954"); + read852.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCACTCCCGGGGTTGAGCCCCGGGTTTTCACATCTGACTTGCCCTGCCACCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); read853.setScores(scores); + rfastqReads.push_back(read853); + FastqRead read854; read854.setName("M00967_44_000000000-A3K85_1_1102_2805_14003"); + read854.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAGTCAGTTTCAACGGCGGGGAGAGGGTGGGCCCCCCAATTTTAACGCTGACTTTACTGTCCGCCCAACCCCCCCTTAAACCCAATAAAACCGGATAAAACCCGCCTCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); read854.setScores(scores); + rfastqReads.push_back(read854); + FastqRead read855; read855.setName("M00967_44_000000000-A3K85_1_1102_12793_14108"); + read855.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); 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scores.push_back(29); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(27); scores.push_back(38); 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scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(30); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); read855.setScores(scores); + rfastqReads.push_back(read855); + FastqRead read856; read856.setName("M00967_44_000000000-A3K85_1_1102_19900_14215"); + read856.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); read856.setScores(scores); + rfastqReads.push_back(read856); + FastqRead read857; read857.setName("M00967_44_000000000-A3K85_1_1102_9112_14233"); + read857.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCCGGTGGCGCTCGCGGTTTTTTTCACCGACTTCTCACGCCCCCCTCGCACCCATCTACCCCACAAACTACTTACGACACACCCCGCATCCC"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(37); 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scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); read857.setScores(scores); + rfastqReads.push_back(read857); + FastqRead read858; read858.setName("M00967_44_000000000-A3K85_1_1102_22339_14240"); + read858.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read858.setScores(scores); + rfastqReads.push_back(read858); + FastqRead read859; read859.setName("M00967_44_000000000-A3K85_1_1102_19817_14247"); + read859.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCGCAAATTTTCCGCTGACTTGGCATCCCGCCCGCGCACCCCTTAAACCCAATAAAACCGGATAAACCCACCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read860.setScores(scores); + rfastqReads.push_back(read860); + FastqRead read861; read861.setName("M00967_44_000000000-A3K85_1_1102_20988_14263"); + read861.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); read861.setScores(scores); + rfastqReads.push_back(read861); + FastqRead read862; read862.setName("M00967_44_000000000-A3K85_1_1102_28089_14363"); + read862.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACCGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGGCCACGCACCCTTTAAACCCCATAAATCCGGGTAACGCTCGCATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ rfastqReads.push_back(read862); + FastqRead read863; read863.setName("M00967_44_000000000-A3K85_1_1102_27264_14368"); + read863.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read863.setScores(scores); + rfastqReads.push_back(read863); + FastqRead read864; read864.setName("M00967_44_000000000-A3K85_1_1102_20479_14459"); + read864.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCTCCTCCTCCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); read864.setScores(scores); + rfastqReads.push_back(read864); + FastqRead read865; read865.setName("M00967_44_000000000-A3K85_1_1102_18839_14597"); + read865.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(13); read866.setScores(scores); + rfastqReads.push_back(read866); + FastqRead read867; read867.setName("M00967_44_000000000-A3K85_1_1102_7186_14674"); + read867.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCGAAAATTTACCGCTGACTTGGCATCCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGGTAACGCCCCCATCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(26); read867.setScores(scores); + rfastqReads.push_back(read867); + FastqRead read868; read868.setName("M00967_44_000000000-A3K85_1_1102_21350_14715"); + read868.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); read868.setScores(scores); + rfastqReads.push_back(read868); + FastqRead read869; read869.setName("M00967_44_000000000-A3K85_1_1102_20472_14719"); + read869.setSeq("CCTGTTCGATCCCCACGCTTTCGCGCCTCACCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGATCAACAGTTTCAAATGCAGTTCTGCGGTTAAGCCGCCGGATTTCACATCTGACTTGTCAACCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read869.setScores(scores); + rfastqReads.push_back(read869); + FastqRead read870; read870.setName("M00967_44_000000000-A3K85_1_1102_8355_14747"); + read870.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); read870.setScores(scores); + rfastqReads.push_back(read870); + FastqRead read871; read871.setName("M00967_44_000000000-A3K85_1_1102_8372_14747"); + read871.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCCCCCAGTTTCAACGGCGGAACCGGGGTTAGCCCCGCGGATTGACCCCTTACTTGATAGAACGCCTGCGCACCCCTTAAACCCAAAAAATCCGGGAAACCCTCCCATCCCACCA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); read871.setScores(scores); + rfastqReads.push_back(read871); + FastqRead read872; read872.setName("M00967_44_000000000-A3K85_1_1102_25161_14836"); + read872.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAACCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(27); scores.push_back(26); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(29); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); read872.setScores(scores); + rfastqReads.push_back(read872); + FastqRead read873; read873.setName("M00967_44_000000000-A3K85_1_1102_26656_14852"); + read873.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGAAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); 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scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(37); scores.push_back(12); read873.setScores(scores); + rfastqReads.push_back(read873); + FastqRead read874; read874.setName("M00967_44_000000000-A3K85_1_1102_19768_14866"); + read874.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read874.setScores(scores); + rfastqReads.push_back(read874); + FastqRead read875; read875.setName("M00967_44_000000000-A3K85_1_1102_8420_14902"); + read875.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read875.setScores(scores); + rfastqReads.push_back(read875); + FastqRead read876; read876.setName("M00967_44_000000000-A3K85_1_1102_2209_14915"); + read876.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCCAAGGCAGGGCCGGGTTGGGACCCCGAAATTTACCGCCGGATTTGCAACACCCCCTCGCCCCCCTTAAAACCAATAAAATCGGGTGAACCCTGGCCCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); 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scores.push_back(13); read876.setScores(scores); + rfastqReads.push_back(read876); + FastqRead read877; read877.setName("M00967_44_000000000-A3K85_1_1102_24707_14936"); + read877.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCTATACAGTTTCCAAAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTTCAGACTTGCATCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); read877.setScores(scores); + rfastqReads.push_back(read877); + FastqRead read878; read878.setName("M00967_44_000000000-A3K85_1_1102_29647_14957"); + read878.setSeq("CCTGTTAGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGAAGTTCTGAGTGGTATCTATGCATTTCACAGCTAAACCAAGCATTCAGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCCGGGGTAATCCCCTCAATTTGCACTCGCTCCTATCGCCCCGCCTACGTACACTCTACACCCAAACAACTCCGCTAACGCCCACACCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(18); scores.push_back(16); scores.push_back(38); scores.push_back(33); scores.push_back(36); 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scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); read878.setScores(scores); + rfastqReads.push_back(read878); + FastqRead read879; read879.setName("M00967_44_000000000-A3K85_1_1102_18604_15010"); + read879.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTTGCCAGTTTCAACGGCGGGGCCGGGGTGGGCCCCGCAGTTTTTACCCCTACTTTGCCAAACCCCCACCCCCCCCTTTAAACCAAAAAAAACAGACAAAAAACCCACCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(12); read879.setScores(scores); + rfastqReads.push_back(read879); + FastqRead read880; read880.setName("M00967_44_000000000-A3K85_1_1102_3259_15070"); + read880.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCGCGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCCATGCAGTTCCAAGGGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACCCCTGGCTTGCATGGCCGTCTACGCTCCCTTTACACCCAGTGAATCCGGATAACGCCCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read880.setScores(scores); + rfastqReads.push_back(read880); + FastqRead read881; read881.setName("M00967_44_000000000-A3K85_1_1102_13311_15099"); + read881.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCACTTGCCTCTCCGACACTCTAGATATACAGTTTCCAATGCAGTTCCGGGGTTGGGCCCCGGATTTTCACATCAGACTTGCAAGTCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAAAGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read881.setScores(scores); + rfastqReads.push_back(read881); + FastqRead read882; read882.setName("M00967_44_000000000-A3K85_1_1102_29210_15181"); + read882.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCCTTACACCCAGTAAATCCGGCTCACGCTCGCCCCCCACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); read882.setScores(scores); + rfastqReads.push_back(read882); + FastqRead read883; read883.setName("M00967_44_000000000-A3K85_1_1102_19133_15201"); + read883.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCCGCACTCAAGAAGTACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCACTCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTCCCACCTAC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(14); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); read883.setScores(scores); + rfastqReads.push_back(read883); + FastqRead read884; read884.setName("M00967_44_000000000-A3K85_1_1102_20657_15222"); + read884.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read884.setScores(scores); + rfastqReads.push_back(read884); + FastqRead read885; read885.setName("M00967_44_000000000-A3K85_1_1102_13292_15250"); + read885.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCCTTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGGCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCAGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(35); scores.push_back(37); 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scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); read885.setScores(scores); + rfastqReads.push_back(read885); + FastqRead read886; read886.setName("M00967_44_000000000-A3K85_1_1102_12198_15252"); + read886.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGGAGGTGGACCACTCAAACTTACCCCCTACCTATCCGTCCGCCCAACCCCCCCTTTAACACAACAAATACCAGTAACACCCCCAACCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(20); scores.push_back(17); scores.push_back(36); scores.push_back(15); scores.push_back(36); 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scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read886.setScores(scores); + rfastqReads.push_back(read886); + FastqRead read887; read887.setName("M00967_44_000000000-A3K85_1_1102_19635_15344"); + read887.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read887.setScores(scores); + rfastqReads.push_back(read887); + FastqRead read888; read888.setName("M00967_44_000000000-A3K85_1_1102_19313_15367"); + read888.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACCGTCCAGCAAGCCGCCTCCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTGCCTCTCCGGCACTCCAGCATGGCAGTTTCAAATGCAGTCCCGGGGTTGGGCCCCGGGTTTTCACATCTGACTTGCCACGCCGCCTGCGCTCCCTTTACCCCCAGTAAATCCGGATAACGCCCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read889.setScores(scores); + rfastqReads.push_back(read889); + FastqRead read890; read890.setName("M00967_44_000000000-A3K85_1_1102_27169_15505"); + read890.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read890.setScores(scores); + rfastqReads.push_back(read890); + FastqRead read891; read891.setName("M00967_44_000000000-A3K85_1_1102_21855_15534"); + read891.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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read892.setName("M00967_44_000000000-A3K85_1_1102_6891_15634"); + read892.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCCAAAATTTACCGCCGACCTGGCATCCCCCCTGCGCACCCCTTAAACCCCATAAAACCCGGTTACGCCCCCACCCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); read892.setScores(scores); + rfastqReads.push_back(read892); + FastqRead read893; read893.setName("M00967_44_000000000-A3K85_1_1102_6633_15660"); + read893.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATCAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(25); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read893.setScores(scores); + rfastqReads.push_back(read893); + FastqRead read894; read894.setName("M00967_44_000000000-A3K85_1_1102_28366_15663"); + read894.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read894.setScores(scores); + rfastqReads.push_back(read894); + FastqRead read895; read895.setName("M00967_44_000000000-A3K85_1_1102_28349_15663"); + read895.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCCCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); 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scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(30); read895.setScores(scores); + rfastqReads.push_back(read895); + FastqRead read896; read896.setName("M00967_44_000000000-A3K85_1_1102_16877_15696"); + read896.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGGCCCCCCAAATTTTACGCCTCATTGGCATACCCCCCGCGCACCCCTTCAAACCACTAAATCCGGCTCAAGCCCCCCTCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(24); read896.setScores(scores); + rfastqReads.push_back(read896); + FastqRead read897; read897.setName("M00967_44_000000000-A3K85_1_1102_7809_15711"); + read897.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCAATTTGACCGCTGACTTAGCAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read897.setScores(scores); + rfastqReads.push_back(read897); + FastqRead read898; read898.setName("M00967_44_000000000-A3K85_1_1102_21863_15765"); + read898.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); read898.setScores(scores); + rfastqReads.push_back(read898); + FastqRead read899; read899.setName("M00967_44_000000000-A3K85_1_1102_14205_15790"); + read899.setSeq("CCTGTTTGCTACCCACGCTTTCGAACCTCAGCGTCAGTTACAGACCAGAGAGCCGCTTTCGCCACTGGTGTTCTTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTCTCCCAGTTTCCAATGCACTACTCCGGTTAAGCCGAAGGCTTTCACATCAGACTTAAAAGACCGCCTGCGTTCCCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); read899.setScores(scores); + rfastqReads.push_back(read899); + FastqRead read900; read900.setName("M00967_44_000000000-A3K85_1_1102_25773_15893"); + read900.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACGGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGACGGGGTTGAGCCCCGGATTTTTTCCGCTGCCTTAAATAACCGCCTCCGCCCCCCTTAAACCCCATAAATCCGGTTAACAACCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(27); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read900.setScores(scores); + rfastqReads.push_back(read900); + FastqRead read901; read901.setName("M00967_44_000000000-A3K85_1_1102_24965_15923"); + read901.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(24); read902.setScores(scores); + rfastqReads.push_back(read902); + FastqRead read903; read903.setName("M00967_44_000000000-A3K85_1_1102_19985_15992"); + read903.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); read903.setScores(scores); + rfastqReads.push_back(read903); + FastqRead read904; read904.setName("M00967_44_000000000-A3K85_1_1102_11369_16089"); + read904.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGGGCCCCCAAAATTGACCGCTGACTTGGCATCCCGCCGGCGCACCCCTCACACCCAAAACATCCGGGTAAAACCCCCATCTCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read904.setScores(scores); + rfastqReads.push_back(read904); + FastqRead read905; read905.setName("M00967_44_000000000-A3K85_1_1102_22679_16128"); + read905.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read905.setScores(scores); + rfastqReads.push_back(read905); + FastqRead read906; read906.setName("M00967_44_000000000-A3K85_1_1102_18981_16151"); + read906.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); read906.setScores(scores); + rfastqReads.push_back(read906); + FastqRead read907; read907.setName("M00967_44_000000000-A3K85_1_1102_16043_16162"); + read907.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGGGGGCCCCCACATTTGACCGCTGACTTTGCCTACCCCCCGCGCCACCCTTTAAACCCATACATCCCGATAAACCCCTCATTCCCAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); read907.setScores(scores); + rfastqReads.push_back(read907); + FastqRead read908; read908.setName("M00967_44_000000000-A3K85_1_1102_18799_16229"); + read908.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); read908.setScores(scores); + rfastqReads.push_back(read908); + FastqRead read909; read909.setName("M00967_44_000000000-A3K85_1_1102_17039_16259"); + read909.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTTAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(28); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read909.setScores(scores); + rfastqReads.push_back(read909); + FastqRead read910; read910.setName("M00967_44_000000000-A3K85_1_1102_7389_16283"); + read910.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGCAGAGGGTGTGCCCCTCAAATTTTCCGCTGAACTAAATTTCCGCCCACCCCCCCCTTTAAAACAATAAATCCCCACAAAGCTCCCCTCACCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); read910.setScores(scores); + rfastqReads.push_back(read910); + FastqRead read911; read911.setName("M00967_44_000000000-A3K85_1_1102_7375_16297"); + read911.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGCAGAGGCAGATCCGCCCCATTTTTCCAGCGACCTAATTGTGCTCCTCAGCACCCCTTTAACCCAATAAAAACGGATAACAACCGCATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(15); 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scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); read911.setScores(scores); + rfastqReads.push_back(read911); + FastqRead read912; read912.setName("M00967_44_000000000-A3K85_1_1102_26496_16334"); + read912.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(18); scores.push_back(33); scores.push_back(19); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(13); read912.setScores(scores); + rfastqReads.push_back(read912); + FastqRead read913; read913.setName("M00967_44_000000000-A3K85_1_1102_11507_16364"); + read913.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCCCGGTTGAGCCGGGAATTTTCTCACCTGACTTAACAACCCCCCCCCCCCCCCCTTAACCCCAACAAACCCGCATAACCCCCGCCCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); read913.setScores(scores); + rfastqReads.push_back(read913); + FastqRead read914; read914.setName("M00967_44_000000000-A3K85_1_1102_23904_16480"); + read914.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCGGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTGACCGCTGCCTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGACCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read915.setScores(scores); + rfastqReads.push_back(read915); + FastqRead read916; read916.setName("M00967_44_000000000-A3K85_1_1102_9262_16559"); + read916.setSeq("CCTGTTCGATACCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read916.setScores(scores); + rfastqReads.push_back(read916); + FastqRead read917; read917.setName("M00967_44_000000000-A3K85_1_1102_11075_16577"); + read917.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCCCGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCCCGCTCTTTACGCCCAATAATTCCGGATAACCCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); read917.setScores(scores); + rfastqReads.push_back(read917); + FastqRead read918; read918.setName("M00967_44_000000000-A3K85_1_1102_22601_16617"); + read918.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read918.setScores(scores); + rfastqReads.push_back(read918); + FastqRead read919; read919.setName("M00967_44_000000000-A3K85_1_1102_10672_16660"); + read919.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCGAAAATTTACCGCTGACTTGGCATCCCGCCTGCGCCCCCCTTTAAACCCATCAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); read919.setScores(scores); + rfastqReads.push_back(read919); + FastqRead read920; read920.setName("M00967_44_000000000-A3K85_1_1102_25954_16670"); + read920.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGCGCGCCGGTAAGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGGTTGGCCCCCAGCCTTTACCGCCGACTTAAACGCCCCCCCAACGCCCCCTTTAACCCAAAAAAAACGGCAAAACCCCTCCCCCCACC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(17); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); read920.setScores(scores); + rfastqReads.push_back(read920); + FastqRead read921; read921.setName("M00967_44_000000000-A3K85_1_1102_7434_16732"); + read921.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCAAATTTGACCCCTGACTTGGCATCCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGGTAACGCCTCCCACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(27); scores.push_back(32); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); read921.setScores(scores); + rfastqReads.push_back(read921); + FastqRead read922; read922.setName("M00967_44_000000000-A3K85_1_1102_25966_16739"); + read922.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGGAGAGGGTGCGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATACTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(27); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); read922.setScores(scores); + rfastqReads.push_back(read922); + FastqRead read923; read923.setName("M00967_44_000000000-A3K85_1_1102_10993_16770"); + read923.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCACGGTTGCGGCCCGCGATTTTTCCCCCTACTTTGCCAAAAACCTTCCCACCCCTTTTAACCCCAAAAAACCTCAAAAGCCCCCCCACCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); read923.setScores(scores); + rfastqReads.push_back(read923); + FastqRead read924; read924.setName("M00967_44_000000000-A3K85_1_1102_18477_16801"); + read924.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(13); read924.setScores(scores); + rfastqReads.push_back(read924); + FastqRead read925; read925.setName("M00967_44_000000000-A3K85_1_1102_16374_16834"); + read925.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read925.setScores(scores); + rfastqReads.push_back(read925); + FastqRead read926; read926.setName("M00967_44_000000000-A3K85_1_1102_3847_16863"); + read926.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACATTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGAAGTCCGGGGGTTGGGCCCCCGCCTTTCCCTCCAGACTTACATCACCGTCTACGGTCCCTTTACACCCAGTCATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(29); scores.push_back(31); scores.push_back(18); scores.push_back(16); scores.push_back(31); scores.push_back(18); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(32); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(17); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(29); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(31); scores.push_back(17); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(27); scores.push_back(27); scores.push_back(30); scores.push_back(14); scores.push_back(15); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read926.setScores(scores); + rfastqReads.push_back(read926); + FastqRead read927; read927.setName("M00967_44_000000000-A3K85_1_1102_4873_16910"); + read927.setSeq("CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGCATTCCGCTTACCTCTCCCGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(18); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); read928.setScores(scores); + rfastqReads.push_back(read928); + FastqRead read929; read929.setName("M00967_44_000000000-A3K85_1_1102_6208_17039"); + read929.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCACTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGACTTGCCCTGCCACCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(13); read929.setScores(scores); + rfastqReads.push_back(read929); + FastqRead read930; read930.setName("M00967_44_000000000-A3K85_1_1102_24668_17079"); + read930.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTTCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); read930.setScores(scores); + rfastqReads.push_back(read930); + FastqRead read931; read931.setName("M00967_44_000000000-A3K85_1_1102_15585_17084"); + read931.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(29); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read931.setScores(scores); + rfastqReads.push_back(read931); + FastqRead read932; read932.setName("M00967_44_000000000-A3K85_1_1102_9672_17086"); + read932.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTACCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(25); read932.setScores(scores); + rfastqReads.push_back(read932); + FastqRead read933; read933.setName("M00967_44_000000000-A3K85_1_1102_18472_17092"); + read933.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAAAACCAGTTTCAACGGCTCGAAGGGGTTGAGCCCCCCAATTTTACCGCTGACTTGAAATTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); read933.setScores(scores); + rfastqReads.push_back(read933); + FastqRead read934; read934.setName("M00967_44_000000000-A3K85_1_1102_3835_17118"); + read934.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); read934.setScores(scores); + rfastqReads.push_back(read934); + FastqRead read935; read935.setName("M00967_44_000000000-A3K85_1_1102_25555_17242"); + read935.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAAGTTGAGCCTCTCAATTTTACCGCTGGCTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATCAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(31); scores.push_back(27); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(25); scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); read935.setScores(scores); + rfastqReads.push_back(read935); + FastqRead read936; read936.setName("M00967_44_000000000-A3K85_1_1102_14017_17269"); + read936.setSeq("CCTGAAAGAATCACACGCTTTCATGCCTGAGCTTCAGTCGTAGTTTGTTCCGCTGCCTTCGCAATCGCAGTTCTGCCTGATATCTTTGTATTTCACCGCTACACCATGTATTCCGCTTGCTTCTTGTACACTCTCGACCCACAGCATCAGCAGCTGCACCGCAGCAAAGCCCAGAGCATCACACACAAAGTCATCGCACGGCCCGCGTCCCCCTCAACCCTCACACATACACACAAGCATCGCATCACCC"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(18); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(17); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(29); scores.push_back(15); scores.push_back(14); scores.push_back(16); scores.push_back(33); scores.push_back(29); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(17); scores.push_back(29); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(30); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(12); read936.setScores(scores); + rfastqReads.push_back(read936); + FastqRead read937; read937.setName("M00967_44_000000000-A3K85_1_1102_3681_17285"); + read937.setSeq("CCTGTTCGATCCACGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCACTCTGGGTTCTGCGTGGTATCTATGCATTTCACCGCTACACCCCGCATTCCGCCTTTTTCTCGCCCACCTAAGGCCCCACGTTTCAACGGCCGCCCGGGGTTGGACCCCGACTTTTTACCGCTGCCTTAAAAGCCCGCCTCCGCCCCCTTTAAACCCAATAACTCCGGATAACGCTCCCCTCCCCCG"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(33); 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scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read937.setScores(scores); + rfastqReads.push_back(read937); + FastqRead read938; read938.setName("M00967_44_000000000-A3K85_1_1102_22878_17371"); + read938.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read938.setScores(scores); + rfastqReads.push_back(read938); + FastqRead read939; read939.setName("M00967_44_000000000-A3K85_1_1102_4487_17392"); + read939.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read939.setScores(scores); + rfastqReads.push_back(read939); + FastqRead read940; read940.setName("M00967_44_000000000-A3K85_1_1102_19830_17397"); + read940.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(25); scores.push_back(29); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); read942.setScores(scores); + rfastqReads.push_back(read942); + FastqRead read943; read943.setName("M00967_44_000000000-A3K85_1_1102_29077_17547"); + read943.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(12); read943.setScores(scores); + rfastqReads.push_back(read943); + FastqRead read944; read944.setName("M00967_44_000000000-A3K85_1_1102_26081_17551"); + read944.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCCACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); read944.setScores(scores); + rfastqReads.push_back(read944); + FastqRead read945; read945.setName("M00967_44_000000000-A3K85_1_1102_17835_17586"); + read945.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGGGCGGGGGTGGGGCCCGCCCCTTCCCCGCTCACTTCAGGGGGCGCCCGCGGACCCCTCCAACCCAACAAACCCGGAGAACGCACGCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); read945.setScores(scores); + rfastqReads.push_back(read945); + FastqRead read946; read946.setName("M00967_44_000000000-A3K85_1_1102_19515_17750"); + read946.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCCCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read946.setScores(scores); + rfastqReads.push_back(read946); + FastqRead read947; read947.setName("M00967_44_000000000-A3K85_1_1102_25712_17791"); + read947.setSeq("CCTGTTCGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(29); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read947.setScores(scores); + rfastqReads.push_back(read947); + FastqRead read948; read948.setName("M00967_44_000000000-A3K85_1_1102_21715_17857"); + read948.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(35); read948.setScores(scores); + rfastqReads.push_back(read948); + FastqRead read949; read949.setName("M00967_44_000000000-A3K85_1_1102_11676_17880"); + read949.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(25); read949.setScores(scores); + rfastqReads.push_back(read949); + FastqRead read950; read950.setName("M00967_44_000000000-A3K85_1_1102_20324_17896"); + read950.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCATCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read950.setScores(scores); + rfastqReads.push_back(read950); + FastqRead read951; read951.setName("M00967_44_000000000-A3K85_1_1102_2950_17933"); + read951.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACCGCCCGCCTAAGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); 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scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); read951.setScores(scores); + rfastqReads.push_back(read951); + FastqRead read952; read952.setName("M00967_44_000000000-A3K85_1_1102_2931_17933"); + read952.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(19); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read952.setScores(scores); + rfastqReads.push_back(read952); + FastqRead read953; read953.setName("M00967_44_000000000-A3K85_1_1102_21075_18003"); + read953.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(12); read955.setScores(scores); + rfastqReads.push_back(read955); + FastqRead read956; read956.setName("M00967_44_000000000-A3K85_1_1102_27248_18103"); + read956.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read956.setScores(scores); + rfastqReads.push_back(read956); + FastqRead read957; read957.setName("M00967_44_000000000-A3K85_1_1102_11734_18128"); + read957.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCGAAATTTGACCGCTGACCTGGCATCCCGCCTGCGCACCCCTTAAACCCAATAAATCCCGATAACGCTCGCATCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); read957.setScores(scores); + rfastqReads.push_back(read957); + FastqRead read958; read958.setName("M00967_44_000000000-A3K85_1_1102_19017_18139"); + read958.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCAGTACTCTAGCCGCACAGTTTCCAGAGCAGTTCCGGGGTTGGGCCCCGGGCTTTCACTCCAGACTTGCACTGCCGTCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read958.setScores(scores); + rfastqReads.push_back(read958); + FastqRead read959; read959.setName("M00967_44_000000000-A3K85_1_1102_26800_18141"); + read959.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read959.setScores(scores); + rfastqReads.push_back(read959); + FastqRead read960; read960.setName("M00967_44_000000000-A3K85_1_1102_24835_18161"); + read960.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCACGCACCCCTTCAACCCAATAAATCCGGATAACGCCCCCATCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(38); 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scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(13); read960.setScores(scores); + rfastqReads.push_back(read960); + FastqRead read961; read961.setName("M00967_44_000000000-A3K85_1_1102_24787_18170"); + read961.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read961.setScores(scores); + rfastqReads.push_back(read961); + FastqRead read962; read962.setName("M00967_44_000000000-A3K85_1_1102_24447_18176"); + read962.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTCCACAGTTTCCAAAGCAGTCCCAGGGTTGAGCCCTGGGCTTTCACTTCAGACTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); read962.setScores(scores); + rfastqReads.push_back(read962); + FastqRead read963; read963.setName("M00967_44_000000000-A3K85_1_1102_22054_18259"); + read963.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); read963.setScores(scores); + rfastqReads.push_back(read963); + FastqRead read964; read964.setName("M00967_44_000000000-A3K85_1_1102_24133_18275"); + read964.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read964.setScores(scores); + rfastqReads.push_back(read964); + FastqRead read965; read965.setName("M00967_44_000000000-A3K85_1_1102_9758_18442"); + read965.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCCTCAGCGTCAGTTAGAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTACCTCTACTCCACTCAAGCTCTGCAGTTTCAAAAGCAGTTCATGGGTTAAGCCCATGGATTTCACTTCTGACTTGCAAAGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); read965.setScores(scores); + rfastqReads.push_back(read965); + FastqRead read966; read966.setName("M00967_44_000000000-A3K85_1_1102_4793_18443"); + read966.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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+ scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(35); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); 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scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); read967.setScores(scores); + rfastqReads.push_back(read967); + FastqRead read968; read968.setName("M00967_44_000000000-A3K85_1_1102_27817_18466"); + read968.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read968.setScores(scores); + rfastqReads.push_back(read968); + FastqRead read969; read969.setName("M00967_44_000000000-A3K85_1_1102_14412_18629"); + read969.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCCCTCCGACACTCTAGCCGCACAGTTTCAAAAGCACTCCCAGGGTTGAGCCCCGGGTTTTCACTTCTGACTTGCATGGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read970.setScores(scores); + rfastqReads.push_back(read970); + FastqRead read971; read971.setName("M00967_44_000000000-A3K85_1_1102_17766_18634"); + read971.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGTTCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read971.setScores(scores); + rfastqReads.push_back(read971); + FastqRead read972; read972.setName("M00967_44_000000000-A3K85_1_1102_19199_18689"); + read972.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read972.setScores(scores); + rfastqReads.push_back(read972); + FastqRead read973; read973.setName("M00967_44_000000000-A3K85_1_1102_5933_18693"); + read973.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCAGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCCTTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTGGGACCCCCCATTCGTACACTTAATTCACAACCAGCCCCAACACCCTTCTAAACCAACAAATAAAGAAAACACAAACAACCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(18); scores.push_back(16); scores.push_back(29); scores.push_back(18); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(16); scores.push_back(37); 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scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); read973.setScores(scores); + rfastqReads.push_back(read973); + FastqRead read974; read974.setName("M00967_44_000000000-A3K85_1_1102_16063_18696"); + read974.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCCTCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(12); read974.setScores(scores); + rfastqReads.push_back(read974); + FastqRead read975; read975.setName("M00967_44_000000000-A3K85_1_1102_10569_18728"); + read975.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read975.setScores(scores); + rfastqReads.push_back(read975); + FastqRead read976; read976.setName("M00967_44_000000000-A3K85_1_1102_3883_18758"); + read976.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCGGTTCACGCTCGCCTCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); read976.setScores(scores); + rfastqReads.push_back(read976); + FastqRead read977; read977.setName("M00967_44_000000000-A3K85_1_1102_22275_18771"); + read977.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCGCGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCCATGCAGTTCCAAGGGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACCCCTGGCTTGCATGGCCGTCTACGCTCCCTTTACACCCAGTGAATCCGGATAACGCCCGCCCCCTCCG"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(36); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read977.setScores(scores); + rfastqReads.push_back(read977); + FastqRead read978; read978.setName("M00967_44_000000000-A3K85_1_1102_22265_18787"); + read978.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCGCGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCCATGCAGTTCCAAGGGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACCCCTGGCTTGCATGGCCGTCTACGCTCCCTTTACACCCAGTGAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(13); read978.setScores(scores); + rfastqReads.push_back(read978); + FastqRead read979; read979.setName("M00967_44_000000000-A3K85_1_1102_10355_18792"); + read979.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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read980.setName("M00967_44_000000000-A3K85_1_1102_5229_18807"); + read980.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAAACCGGGAAACGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(33); 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scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read980.setScores(scores); + rfastqReads.push_back(read980); + FastqRead read981; read981.setName("M00967_44_000000000-A3K85_1_1102_15805_18840"); + read981.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(24); read981.setScores(scores); + rfastqReads.push_back(read981); + FastqRead read982; read982.setName("M00967_44_000000000-A3K85_1_1102_13840_18879"); + read982.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); 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scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); 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scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(13); read984.setScores(scores); + rfastqReads.push_back(read984); + FastqRead read985; read985.setName("M00967_44_000000000-A3K85_1_1102_11977_18919"); + read985.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTCCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read985.setScores(scores); + rfastqReads.push_back(read985); + FastqRead read986; read986.setName("M00967_44_000000000-A3K85_1_1102_9422_18920"); + read986.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); 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scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(26); read986.setScores(scores); + rfastqReads.push_back(read986); + FastqRead read987; read987.setName("M00967_44_000000000-A3K85_1_1102_16791_18947"); + read987.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); read987.setScores(scores); + rfastqReads.push_back(read987); + FastqRead read988; read988.setName("M00967_44_000000000-A3K85_1_1102_27084_19000"); + read988.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCCCACTCTAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(35); scores.push_back(20); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(16); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(29); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read988.setScores(scores); + rfastqReads.push_back(read988); + FastqRead read989; read989.setName("M00967_44_000000000-A3K85_1_1102_9210_19049"); + read989.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(12); read990.setScores(scores); + rfastqReads.push_back(read990); + FastqRead read991; read991.setName("M00967_44_000000000-A3K85_1_1102_15663_19295"); + read991.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGTGCCCCCAAATTTGACCGCCGACTTGGCCGCCCGCCCGCGCACCCCTTAAACCCAAAAAATCCGGATAACCCACGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(24); read991.setScores(scores); + rfastqReads.push_back(read991); + FastqRead read992; read992.setName("M00967_44_000000000-A3K85_1_1102_13914_19476"); + read992.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGTTGGGCCCCCCAATTTGACCACTGACTTAACGGACCGCCTCCGGCCCCTTTAAACCCCATAAAACCGCAAAACAACCGCAACCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ rfastqReads.push_back(read992); + FastqRead read993; read993.setName("M00967_44_000000000-A3K85_1_1102_6043_19507"); + read993.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGTCCGGATCCTCC"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(36); 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scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); read993.setScores(scores); + rfastqReads.push_back(read993); + FastqRead read994; read994.setName("M00967_44_000000000-A3K85_1_1102_8436_19521"); + read994.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read994.setScores(scores); + rfastqReads.push_back(read994); + FastqRead read995; read995.setName("M00967_44_000000000-A3K85_1_1102_21194_19609"); + read995.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCTTCACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCGGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); read997.setScores(scores); + rfastqReads.push_back(read997); + FastqRead read998; read998.setName("M00967_44_000000000-A3K85_1_1102_3267_19763"); + read998.setSeq("CCTGTTCGATACCCACACTTTCGAGCATCAGCGTCAGTTGACGACCGGAAAGCCGCCTTCGCAACCGGAGTTCTTCGATATATCTACGCATTCCACCGCTACACATGGAATTCCACTTACCTCTTCTGCACTCAAGTACACCAGTTTCAGATGCAATAATCCGGTTGAGCCGCCAACTTTACCATCAAATTTATTGACCCGCCTCCACTCCCTTTACGCCCAATAAATCCGGACAACCCTTGCCACCCACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); 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scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read998.setScores(scores); + rfastqReads.push_back(read998); + FastqRead read999; read999.setName("M00967_44_000000000-A3K85_1_1102_3266_19785"); + read999.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(38); 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scores.push_back(38); scores.push_back(27); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(13); read999.setScores(scores); + rfastqReads.push_back(read999); + FastqRead read1000; read1000.setName("M00967_44_000000000-A3K85_1_1102_16073_19847"); + read1000.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGACTTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1000.setScores(scores); + rfastqReads.push_back(read1000); + FastqRead read1001; read1001.setName("M00967_44_000000000-A3K85_1_1102_11268_19864"); + read1001.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAGAGGTTGAGGCCCCCAAATTTTCAGCCGACTTTACCGTCCGCCTAAGCGCCCCTTCAATCCACTAAAACCGGATAACAAACCCCACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); read1001.setScores(scores); + rfastqReads.push_back(read1001); + FastqRead read1002; read1002.setName("M00967_44_000000000-A3K85_1_1102_28020_19877"); + read1002.setSeq("CCTGTTCGCTACCTACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTTTGCTGCCTTAGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGCCCCCCACAATTTCCCCCCGCATTCGCAGCCCGCCTGCGCACCCTTCTAACCCAACAAAACCGGGTCACACCTCCCGCCTCCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); 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scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(27); scores.push_back(38); scores.push_back(28); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); read1002.setScores(scores); + rfastqReads.push_back(read1002); + FastqRead read1003; read1003.setName("M00967_44_000000000-A3K85_1_1102_22198_19923"); + read1003.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(13); read1003.setScores(scores); + rfastqReads.push_back(read1003); + FastqRead read1004; read1004.setName("M00967_44_000000000-A3K85_1_1102_19372_19984"); + read1004.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(24); read1004.setScores(scores); + rfastqReads.push_back(read1004); + FastqRead read1005; read1005.setName("M00967_44_000000000-A3K85_1_1102_26397_20010"); + read1005.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCGACGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCCACCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(12); read1005.setScores(scores); + rfastqReads.push_back(read1005); + FastqRead read1006; read1006.setName("M00967_44_000000000-A3K85_1_1102_21846_20050"); + read1006.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); read1006.setScores(scores); + rfastqReads.push_back(read1006); + FastqRead read1007; read1007.setName("M00967_44_000000000-A3K85_1_1102_12005_20077"); + read1007.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1007.setScores(scores); + rfastqReads.push_back(read1007); + FastqRead read1008; read1008.setName("M00967_44_000000000-A3K85_1_1102_19622_20085"); + read1008.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); read1008.setScores(scores); + rfastqReads.push_back(read1008); + FastqRead read1009; read1009.setName("M00967_44_000000000-A3K85_1_1102_3447_20101"); + read1009.setSeq("CATGTTTGCTCCCGACGCTTTCGAGCCTCAACGTCAGTTAAAGTCCAGTAAGCCGCCTTCGCCAATGGTGTTACTCCTAATATCTAAGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCATTCTAGTCATACAGTTTCAAAAGCAGTCCCGCAGTTGACCCGCGGGCTTTCACTTCTGACTTGCATCAACGTCTACGCTCCCGTTACACCCACAAAATCCGGATAACGCCTGCCACCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(18); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(35); 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scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); read1009.setScores(scores); + rfastqReads.push_back(read1009); + FastqRead read1010; read1010.setName("M00967_44_000000000-A3K85_1_1102_9551_20106"); + read1010.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1010.setScores(scores); + rfastqReads.push_back(read1010); + FastqRead read1011; read1011.setName("M00967_44_000000000-A3K85_1_1102_14497_20110"); + read1011.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1011.setScores(scores); + rfastqReads.push_back(read1011); + FastqRead read1012; read1012.setName("M00967_44_000000000-A3K85_1_1102_4075_20122"); + read1012.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTCGGAATTCCGCCTGCCTCTCCGATACTCAAGCCCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGCCTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAAAGCTTGCCACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(28); scores.push_back(15); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(27); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(25); read1012.setScores(scores); + rfastqReads.push_back(read1012); + FastqRead read1013; read1013.setName("M00967_44_000000000-A3K85_1_1102_6032_20234"); + read1013.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGGTGAGCCCCCACACTTTACCGCTGACTTAACAACCCGCCTCCGCACCCCTTAAACCCAAAAAATCCGGATAAAACCCGCATCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(17); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1013.setScores(scores); + rfastqReads.push_back(read1013); + FastqRead read1014; read1014.setName("M00967_44_000000000-A3K85_1_1102_27026_20298"); + read1014.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1014.setScores(scores); + rfastqReads.push_back(read1014); + FastqRead read1015; read1015.setName("M00967_44_000000000-A3K85_1_1102_5988_20325"); + read1015.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTAACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCACATTTTACCCCTCACTTGGACACCCCCCATCGCCCCCCTTATACCCAAAAAATACGGATAACGCTCCCCTCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(31); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); 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scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); read1015.setScores(scores); + rfastqReads.push_back(read1015); + FastqRead read1016; read1016.setName("M00967_44_000000000-A3K85_1_1102_22449_20349"); + read1016.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(28); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1016.setScores(scores); + rfastqReads.push_back(read1016); + FastqRead read1017; read1017.setName("M00967_44_000000000-A3K85_1_1102_3060_20455"); + read1017.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGNNNGTNGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTTTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCCTTTAACCCCATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(32); scores.push_back(32); scores.push_back(2); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(29); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(27); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(28); scores.push_back(28); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); read1017.setScores(scores); + rfastqReads.push_back(read1017); + FastqRead read1018; read1018.setName("M00967_44_000000000-A3K85_1_1102_3172_20517"); + read1018.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCCCCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAAATGACTTATCAATCCACCTAAGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATACTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1018.setScores(scores); + rfastqReads.push_back(read1018); + FastqRead read1019; read1019.setName("M00967_44_000000000-A3K85_1_1102_9791_20536"); + read1019.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1019.setScores(scores); + rfastqReads.push_back(read1019); + FastqRead read1020; read1020.setName("M00967_44_000000000-A3K85_1_1102_16986_20592"); + read1020.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); read1020.setScores(scores); + rfastqReads.push_back(read1020); + FastqRead read1021; read1021.setName("M00967_44_000000000-A3K85_1_1102_6870_20620"); + read1021.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAATAAATCCGGCTAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1021.setScores(scores); + rfastqReads.push_back(read1021); + FastqRead read1022; read1022.setName("M00967_44_000000000-A3K85_1_1102_24420_20639"); + read1022.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATACCGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); read1022.setScores(scores); + rfastqReads.push_back(read1022); + FastqRead read1023; read1023.setName("M00967_44_000000000-A3K85_1_1102_23758_20700"); + read1023.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); read1023.setScores(scores); + rfastqReads.push_back(read1023); + FastqRead read1024; read1024.setName("M00967_44_000000000-A3K85_1_1102_4777_20795"); + read1024.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCACTCCCGGGGTTGAGCCCCGGGTTTTCCAATCTGAATTGCCCTGCCACCTACGCTCCCTTTACACCCAGTAAATCCGGATCACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(19); scores.push_back(20); scores.push_back(33); scores.push_back(20); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(19); scores.push_back(17); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(20); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(30); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1024.setScores(scores); + rfastqReads.push_back(read1024); + FastqRead read1025; read1025.setName("M00967_44_000000000-A3K85_1_1102_12289_20824"); + read1025.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGTGAGTCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTCACCTCTCCTGCACTCCAGCTCAACAGTTTTAGATGCAGTTCCGCGGTTGAGCCGCGGGATTTCACATCTAACTTATTAAGCCGCCTACACTCCCTTTACGCCCAGTCATTCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(13); read1025.setScores(scores); + rfastqReads.push_back(read1025); + FastqRead read1026; read1026.setName("M00967_44_000000000-A3K85_1_1102_21306_20842"); + read1026.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTCACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); read1026.setScores(scores); + rfastqReads.push_back(read1026); + FastqRead read1027; read1027.setName("M00967_44_000000000-A3K85_1_1102_14196_20858"); + read1027.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1027.setScores(scores); + rfastqReads.push_back(read1027); + FastqRead read1028; read1028.setName("M00967_44_000000000-A3K85_1_1102_18567_20868"); + read1028.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCCCGCATCCCTCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(12); read1028.setScores(scores); + rfastqReads.push_back(read1028); + FastqRead read1029; read1029.setName("M00967_44_000000000-A3K85_1_1102_27885_20889"); + read1029.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(32); scores.push_back(25); read1029.setScores(scores); + rfastqReads.push_back(read1029); + FastqRead read1030; read1030.setName("M00967_44_000000000-A3K85_1_1102_25374_20968"); + read1030.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCCAATTTACCCCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCGGATAACGCTCGCACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(25); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); read1030.setScores(scores); + rfastqReads.push_back(read1030); + FastqRead read1031; read1031.setName("M00967_44_000000000-A3K85_1_1102_24500_21100"); + read1031.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATTCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); 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scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1032.setScores(scores); + rfastqReads.push_back(read1032); + FastqRead read1033; read1033.setName("M00967_44_000000000-A3K85_1_1102_28192_21177"); + read1033.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1033.setScores(scores); + rfastqReads.push_back(read1033); + FastqRead read1034; read1034.setName("M00967_44_000000000-A3K85_1_1102_25103_21179"); + read1034.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTTACCGCTGACTTCACAGCCCGCCTACGCACCCTTTAAACCCAATAACACCGGATAACGCTCGCACCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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read1034.setScores(scores); + rfastqReads.push_back(read1034); + FastqRead read1035; read1035.setName("M00967_44_000000000-A3K85_1_1102_8157_21204"); + read1035.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGTCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); read1035.setScores(scores); + rfastqReads.push_back(read1035); + FastqRead read1036; read1036.setName("M00967_44_000000000-A3K85_1_1102_18285_21209"); + read1036.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(28); scores.push_back(25); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); read1036.setScores(scores); + rfastqReads.push_back(read1036); + FastqRead read1037; read1037.setName("M00967_44_000000000-A3K85_1_1102_22860_21228"); + read1037.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGCACGGGGTGGGGCCCCCCGATTTTACTCCAGACTTACCGCGCCGCCCACCCCCCCTTTAACCCCAAAAAATCGGGATAACGCCTGCCCCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(18); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(36); 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scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); read1037.setScores(scores); + rfastqReads.push_back(read1037); + FastqRead read1038; read1038.setName("M00967_44_000000000-A3K85_1_1102_7194_21269"); + read1038.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(32); 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scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); read1038.setScores(scores); + rfastqReads.push_back(read1038); + FastqRead read1039; read1039.setName("M00967_44_000000000-A3K85_1_1102_14312_21295"); + read1039.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAGGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); read1039.setScores(scores); + rfastqReads.push_back(read1039); + FastqRead read1040; read1040.setName("M00967_44_000000000-A3K85_1_1102_25809_21308"); + read1040.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCCCAATTTTACCCCTGACTTGGCATCCCGCCCGCGCCCCCTTTTAAACCAATAAATCCGGAGAAAGCCCGCCTCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); read1040.setScores(scores); + rfastqReads.push_back(read1040); + FastqRead read1041; read1041.setName("M00967_44_000000000-A3K85_1_1102_26260_21334"); + read1041.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1041.setScores(scores); + rfastqReads.push_back(read1041); + FastqRead read1042; read1042.setName("M00967_44_000000000-A3K85_1_1102_18976_21369"); + read1042.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1042.setScores(scores); + rfastqReads.push_back(read1042); + FastqRead read1043; read1043.setName("M00967_44_000000000-A3K85_1_1102_15318_21462"); + read1043.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGTTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATACATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(12); read1043.setScores(scores); + rfastqReads.push_back(read1043); + FastqRead read1044; read1044.setName("M00967_44_000000000-A3K85_1_1102_18981_21505"); + read1044.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGGGCCTCTCAATTTTACCGCTGACCTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAAACCCGATAACGCTCGCCTCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(13); read1045.setScores(scores); + rfastqReads.push_back(read1045); + FastqRead read1046; read1046.setName("M00967_44_000000000-A3K85_1_1102_11081_21571"); + read1046.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1046.setScores(scores); + rfastqReads.push_back(read1046); + FastqRead read1047; read1047.setName("M00967_44_000000000-A3K85_1_1102_22433_21571"); + read1047.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCTACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); read1047.setScores(scores); + rfastqReads.push_back(read1047); + FastqRead read1048; read1048.setName("M00967_44_000000000-A3K85_1_1102_18708_21614"); + read1048.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGATAAAACTCCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1048.setScores(scores); + rfastqReads.push_back(read1048); + FastqRead read1049; read1049.setName("M00967_44_000000000-A3K85_1_1102_18021_21653"); + read1049.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1049.setScores(scores); + rfastqReads.push_back(read1049); + FastqRead read1050; read1050.setName("M00967_44_000000000-A3K85_1_1102_17869_21708"); + read1050.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); 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scores.push_back(30); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1050.setScores(scores); + rfastqReads.push_back(read1050); + FastqRead read1051; read1051.setName("M00967_44_000000000-A3K85_1_1102_8662_21781"); + read1051.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCAGTTCCGCGGTTAAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1051.setScores(scores); + rfastqReads.push_back(read1051); + FastqRead read1052; read1052.setName("M00967_44_000000000-A3K85_1_1102_4992_21837"); + read1052.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCACTTCAGACTTGCTTAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(29); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1052.setScores(scores); + rfastqReads.push_back(read1052); + FastqRead read1053; read1053.setName("M00967_44_000000000-A3K85_1_1102_24752_21840"); + read1053.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(29); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(26); read1053.setScores(scores); + rfastqReads.push_back(read1053); + FastqRead read1054; read1054.setName("M00967_44_000000000-A3K85_1_1102_5013_21854"); + read1054.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCCGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAAACCAATAAATCCGGATAACCCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(24); read1054.setScores(scores); + rfastqReads.push_back(read1054); + FastqRead read1055; read1055.setName("M00967_44_000000000-A3K85_1_1102_20106_21873"); + read1055.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTTACTTGATCTTCCCCCTGCGCACCCCTTTAAACCAATAAAACCGGATAACGCTCCCATCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); read1055.setScores(scores); + rfastqReads.push_back(read1055); + FastqRead read1056; read1056.setName("M00967_44_000000000-A3K85_1_1102_7412_21891"); + read1056.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCCCAAATTTACCGCTTACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCGGCAAACGCTCACATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(31); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); read1056.setScores(scores); + rfastqReads.push_back(read1056); + FastqRead read1057; read1057.setName("M00967_44_000000000-A3K85_1_1102_5554_21966"); + read1057.setSeq("CCTGTTCGATACCCACGCTTTCGTGAATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTCCACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACCTTTGACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAAAAAATCCGGACAACGCCCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(29); scores.push_back(30); scores.push_back(14); scores.push_back(29); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(38); scores.push_back(15); scores.push_back(30); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(30); scores.push_back(28); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); read1057.setScores(scores); + rfastqReads.push_back(read1057); + FastqRead read1058; read1058.setName("M00967_44_000000000-A3K85_1_1102_26501_21973"); + read1058.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(28); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); read1058.setScores(scores); + rfastqReads.push_back(read1058); + FastqRead read1059; read1059.setName("M00967_44_000000000-A3K85_1_1102_3929_22073"); + read1059.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGATGACGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGGCATTTGACCGCTTAGTTTACAGCCCGCCTGAGCACCCTTTACAACCCATAAATTCGGATACAACTCGGATTCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(17); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(29); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(31); scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(28); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); read1059.setScores(scores); + rfastqReads.push_back(read1059); + FastqRead read1060; read1060.setName("M00967_44_000000000-A3K85_1_1102_26240_22075"); + read1060.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGGTAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1060.setScores(scores); + rfastqReads.push_back(read1060); + FastqRead read1061; read1061.setName("M00967_44_000000000-A3K85_1_1102_9243_22093"); + read1061.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGTGACGGGGTTGGGCCCCCCCATTTCACTACAGACTTACGGACCGGACTCACACCCCTTTAAACCACCAAAATCCGGTTAACACTGCCACCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1061.setScores(scores); + rfastqReads.push_back(read1061); + FastqRead read1062; read1062.setName("M00967_44_000000000-A3K85_1_1102_8344_22128"); + read1062.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGCCCCCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); read1062.setScores(scores); + rfastqReads.push_back(read1062); + FastqRead read1063; read1063.setName("M00967_44_000000000-A3K85_1_1102_8333_22144"); + read1063.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1063.setScores(scores); + rfastqReads.push_back(read1063); + FastqRead read1064; read1064.setName("M00967_44_000000000-A3K85_1_1102_18941_22172"); + read1064.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1064.setScores(scores); + rfastqReads.push_back(read1064); + FastqRead read1065; read1065.setName("M00967_44_000000000-A3K85_1_1102_25780_22224"); + read1065.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCCTTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1065.setScores(scores); + rfastqReads.push_back(read1065); + FastqRead read1066; read1066.setName("M00967_44_000000000-A3K85_1_1102_5765_22247"); + read1066.setSeq("CCTGTTAGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1066.setScores(scores); + rfastqReads.push_back(read1066); + FastqRead read1067; read1067.setName("M00967_44_000000000-A3K85_1_1102_17751_22352"); + read1067.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1067.setScores(scores); + rfastqReads.push_back(read1067); + FastqRead read1068; read1068.setName("M00967_44_000000000-A3K85_1_1102_20673_22359"); + read1068.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); read1068.setScores(scores); + rfastqReads.push_back(read1068); + FastqRead read1069; read1069.setName("M00967_44_000000000-A3K85_1_1102_15403_22447"); + read1069.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGCGCCCCCAAATTTTACCGCTTACCTGGCCACCCCCCTGCGCACCCCTTAAACACAAAAAATCCGGGTAACGCCCGCCCCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(34); scores.push_back(31); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); read1069.setScores(scores); + rfastqReads.push_back(read1069); + FastqRead read1070; read1070.setName("M00967_44_000000000-A3K85_1_1102_21249_22495"); + read1070.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCCACG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); read1070.setScores(scores); + rfastqReads.push_back(read1070); + FastqRead read1071; read1071.setName("M00967_44_000000000-A3K85_1_1102_4593_22583"); + read1071.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(12); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read1071.setScores(scores); + rfastqReads.push_back(read1071); + FastqRead read1072; read1072.setName("M00967_44_000000000-A3K85_1_1102_14601_22624"); + read1072.setSeq("CCTGTTTGCTACCCACGCTTTCGAACCTCAGCGTCAGTTACAGACCAGAGAGCCGCTTTCGCCACTGGTGTTCTTCCATATATCTACGCATTTCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTCTCCCAGTTTCCAATGCACTACTCCGGTTAAGCCGAAGGCTTTCACATCAGACTTAAAAGACCGCCTGCGTTCCCTTTACGCCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1072.setScores(scores); + rfastqReads.push_back(read1072); + FastqRead read1073; read1073.setName("M00967_44_000000000-A3K85_1_1102_12426_22650"); + read1073.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGCCTTGATCTTCCGCCGGCGCACCCTTTCAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); read1074.setScores(scores); + rfastqReads.push_back(read1074); + FastqRead read1075; read1075.setName("M00967_44_000000000-A3K85_1_1102_14002_22779"); + read1075.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1075.setScores(scores); + rfastqReads.push_back(read1075); + FastqRead read1076; read1076.setName("M00967_44_000000000-A3K85_1_1102_20272_22873"); + read1076.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1076.setScores(scores); + rfastqReads.push_back(read1076); + FastqRead read1077; read1077.setName("M00967_44_000000000-A3K85_1_1102_26910_22888"); + read1077.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCCCTCCGACACTCTAGTCCGGCAGTTTCCAATGCAGTACCAGGGTTGAGCCCTGGGCTTTCACATCAGACTTGCCGTACCGCCTGCGCTCCCTTTACACCCGGTAAATCCGGATAACGCTTGCACCATACG"); + scores.clear(); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1077.setScores(scores); + rfastqReads.push_back(read1077); + FastqRead read1078; read1078.setName("M00967_44_000000000-A3K85_1_1102_4834_22982"); + read1078.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACCTACCTCTCCTGCACTCCCGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGCCTACGACCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(17); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(16); scores.push_back(31); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(27); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(28); scores.push_back(16); scores.push_back(27); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(12); read1078.setScores(scores); + rfastqReads.push_back(read1078); + FastqRead read1079; read1079.setName("M00967_44_000000000-A3K85_1_1102_4636_23047"); + read1079.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCCCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCCGTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTCACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCACTAAATCCCGAAAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(20); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(20); scores.push_back(20); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(30); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(19); scores.push_back(31); scores.push_back(36); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(19); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(27); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(28); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1079.setScores(scores); + rfastqReads.push_back(read1079); + FastqRead read1080; read1080.setName("M00967_44_000000000-A3K85_1_1102_4625_23064"); + read1080.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(25); read1080.setScores(scores); + rfastqReads.push_back(read1080); + FastqRead read1081; read1081.setName("M00967_44_000000000-A3K85_1_1102_15265_23185"); + read1081.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1081.setScores(scores); + rfastqReads.push_back(read1081); + FastqRead read1082; read1082.setName("M00967_44_000000000-A3K85_1_1102_13886_23203"); + read1082.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGCGGTTGGGCCCCCGCCTTTCACACCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(12); read1082.setScores(scores); + rfastqReads.push_back(read1082); + FastqRead read1083; read1083.setName("M00967_44_000000000-A3K85_1_1102_20092_23221"); + read1083.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1083.setScores(scores); + rfastqReads.push_back(read1083); + FastqRead read1084; read1084.setName("M00967_44_000000000-A3K85_1_1102_11032_23275"); + read1084.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCAGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1084.setScores(scores); + rfastqReads.push_back(read1084); + FastqRead read1085; read1085.setName("M00967_44_000000000-A3K85_1_1102_7507_23467"); + read1085.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1085.setScores(scores); + rfastqReads.push_back(read1085); + FastqRead read1086; read1086.setName("M00967_44_000000000-A3K85_1_1102_20659_23537"); + read1086.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(12); read1087.setScores(scores); + rfastqReads.push_back(read1087); + FastqRead read1088; read1088.setName("M00967_44_000000000-A3K85_1_1102_26321_23799"); + read1088.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGCCCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); read1088.setScores(scores); + rfastqReads.push_back(read1088); + FastqRead read1089; read1089.setName("M00967_44_000000000-A3K85_1_1102_24496_23889"); + read1089.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGCCTCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACCGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCCGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); 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read1089.setScores(scores); + rfastqReads.push_back(read1089); + FastqRead read1090; read1090.setName("M00967_44_000000000-A3K85_1_1102_16567_23895"); + read1090.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCCCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1090.setScores(scores); + rfastqReads.push_back(read1090); + FastqRead read1091; read1091.setName("M00967_44_000000000-A3K85_1_1102_24512_23900"); + read1091.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTCCCGCTGAATTAAAAGCCCGCCTACGCACCCTTTAAACCCCATAAATCCGGATAAAGCTCCCAACCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(29); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); read1091.setScores(scores); + rfastqReads.push_back(read1091); + FastqRead read1092; read1092.setName("M00967_44_000000000-A3K85_1_1102_16086_23959"); + read1092.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1092.setScores(scores); + rfastqReads.push_back(read1092); + FastqRead read1093; read1093.setName("M00967_44_000000000-A3K85_1_1102_8482_24022"); + read1093.setSeq("CCTGTTCGATACCCCCGCGTTCGTGGCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCCACACCACGCATTCCGCATACGTCTCGCCCACTCGAGGCCGCCAGTTTCAAAGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGCCTTAACACCCCGCCTCGCCCCCCTTTAACCCCAACAAAACCCGACAACGCCCCCATCCACCG"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); 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scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(12); read1093.setScores(scores); + rfastqReads.push_back(read1093); + FastqRead read1094; read1094.setName("M00967_44_000000000-A3K85_1_1102_11858_24136"); + read1094.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1094.setScores(scores); + rfastqReads.push_back(read1094); + FastqRead read1095; read1095.setName("M00967_44_000000000-A3K85_1_1102_13824_24154"); + read1095.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1095.setScores(scores); + rfastqReads.push_back(read1095); + FastqRead read1096; read1096.setName("M00967_44_000000000-A3K85_1_1102_5948_24254"); + read1096.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); read1096.setScores(scores); + rfastqReads.push_back(read1096); + FastqRead read1097; read1097.setName("M00967_44_000000000-A3K85_1_1102_21019_24358"); + read1097.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(13); read1097.setScores(scores); + rfastqReads.push_back(read1097); + FastqRead read1098; read1098.setName("M00967_44_000000000-A3K85_1_1102_13309_24380"); + read1098.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGCTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); read1098.setScores(scores); + rfastqReads.push_back(read1098); + FastqRead read1099; read1099.setName("M00967_44_000000000-A3K85_1_1102_12374_24394"); + read1099.setSeq("CCTGTTTGATACCCACACTTTCGTGCATCAGCGTCAGTTGCACGCCGGTATGCCGCCTTCGCAATCGGTGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTTGCTCACTCAAGAAACCCAGTTTCAACGGCACTAAGAGGGTTAGCCCCCCGATTTTCACACCAGACTTAAATTACCGCCGGCGCCCCCTTTAACCCCAATAAATCCGGATAACCCCCACCACCCAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(18); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(32); 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scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(28); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(31); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1099.setScores(scores); + rfastqReads.push_back(read1099); + FastqRead read1100; read1100.setName("M00967_44_000000000-A3K85_1_1102_19925_24400"); + read1100.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1100.setScores(scores); + rfastqReads.push_back(read1100); + FastqRead read1101; read1101.setName("M00967_44_000000000-A3K85_1_1102_13018_24459"); + read1101.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGGCCCCGAGATTTACCGCCTGACTTGTATCCCCCCCCGCCCCCCCTTTAAACCCATTAAACCGGGACAAGCACCGCCCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(18); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(27); scores.push_back(27); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); read1101.setScores(scores); + rfastqReads.push_back(read1101); + FastqRead read1102; read1102.setName("M00967_44_000000000-A3K85_1_1102_7114_24544"); + read1102.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGGCATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTTAACCCAATAAATCCGGATAAACCCCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); read1102.setScores(scores); + rfastqReads.push_back(read1102); + FastqRead read1103; read1103.setName("M00967_44_000000000-A3K85_1_1102_21851_24671"); + read1103.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); read1103.setScores(scores); + rfastqReads.push_back(read1103); + FastqRead read1104; read1104.setName("M00967_44_000000000-A3K85_1_1102_13166_24678"); + read1104.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1104.setScores(scores); + rfastqReads.push_back(read1104); + FastqRead read1105; read1105.setName("M00967_44_000000000-A3K85_1_1102_21841_24687"); + read1105.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1105.setScores(scores); + rfastqReads.push_back(read1105); + FastqRead read1106; read1106.setName("M00967_44_000000000-A3K85_1_1102_16084_24695"); + read1106.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCACTCCCGGGGTTGAGCCCCGGGTTTTCACATCTGACTTGCCCTGCCACCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1106.setScores(scores); + rfastqReads.push_back(read1106); + FastqRead read1107; read1107.setName("M00967_44_000000000-A3K85_1_1102_11033_24747"); + read1107.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); read1107.setScores(scores); + rfastqReads.push_back(read1107); + FastqRead read1108; read1108.setName("M00967_44_000000000-A3K85_1_1102_24617_24814"); + read1108.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCAGTACTCTAGCCGCACAGTTTCCAGAGCAGTTCCGGGGTTGGGCCCCGGGCTTTCACTCCAGACTTGCGCTGCCGTCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1108.setScores(scores); + rfastqReads.push_back(read1108); + FastqRead read1109; read1109.setName("M00967_44_000000000-A3K85_1_1102_13003_24849"); + read1109.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1109.setScores(scores); + rfastqReads.push_back(read1109); + FastqRead read1110; read1110.setName("M00967_44_000000000-A3K85_1_1102_13255_25038"); + read1110.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGGCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1110.setScores(scores); + rfastqReads.push_back(read1110); + FastqRead read1111; read1111.setName("M00967_44_000000000-A3K85_1_1102_18813_25054"); + read1111.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAACTCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1111.setScores(scores); + rfastqReads.push_back(read1111); + FastqRead read1112; read1112.setName("M00967_44_000000000-A3K85_1_1102_20120_25062"); + read1112.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCTATACAGTTTCCAAAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTTCAGACTTGCATCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); read1113.setScores(scores); + rfastqReads.push_back(read1113); + FastqRead read1114; read1114.setName("M00967_44_000000000-A3K85_1_1102_13839_25113"); + read1114.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(25); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); read1114.setScores(scores); + rfastqReads.push_back(read1114); + FastqRead read1115; read1115.setName("M00967_44_000000000-A3K85_1_1102_14390_25130"); + read1115.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1115.setScores(scores); + rfastqReads.push_back(read1115); + FastqRead read1116; read1116.setName("M00967_44_000000000-A3K85_1_1102_16408_25165"); + read1116.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTCAACCCAATAAATCCGGAGAACGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); read1116.setScores(scores); + rfastqReads.push_back(read1116); + FastqRead read1117; read1117.setName("M00967_44_000000000-A3K85_1_1102_15601_25205"); + read1117.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1117.setScores(scores); + rfastqReads.push_back(read1117); + FastqRead read1118; read1118.setName("M00967_44_000000000-A3K85_1_1102_22706_25296"); + read1118.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1118.setScores(scores); + rfastqReads.push_back(read1118); + FastqRead read1119; read1119.setName("M00967_44_000000000-A3K85_1_1102_9358_25344"); + read1119.setSeq("CCTGTTTGATCCCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); read1119.setScores(scores); + rfastqReads.push_back(read1119); + FastqRead read1120; read1120.setName("M00967_44_000000000-A3K85_1_1102_7439_25389"); + read1120.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCTTCACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCGGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(30); scores.push_back(36); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(30); read1120.setScores(scores); + rfastqReads.push_back(read1120); + FastqRead read1121; read1121.setName("M00967_44_000000000-A3K85_1_1102_15712_25398"); + read1121.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGGCATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACCCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(28); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(13); read1121.setScores(scores); + rfastqReads.push_back(read1121); + FastqRead read1122; read1122.setName("M00967_44_000000000-A3K85_1_1102_12245_25505"); + read1122.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); read1122.setScores(scores); + rfastqReads.push_back(read1122); + FastqRead read1123; read1123.setName("M00967_44_000000000-A3K85_1_1102_18414_25571"); + read1123.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1123.setScores(scores); + rfastqReads.push_back(read1123); + FastqRead read1124; read1124.setName("M00967_44_000000000-A3K85_1_1102_10179_25668"); + read1124.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1124.setScores(scores); + rfastqReads.push_back(read1124); + FastqRead read1125; read1125.setName("M00967_44_000000000-A3K85_1_1102_14185_25718"); + read1125.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1125.setScores(scores); + rfastqReads.push_back(read1125); + FastqRead read1126; read1126.setName("M00967_44_000000000-A3K85_1_1102_19639_25825"); + read1126.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAACGGCAGTTTAGAACGCAGCCACCGGTTGAGCCGATGGATTTAACATTCTACTTGCCATCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); read1126.setScores(scores); + rfastqReads.push_back(read1126); + FastqRead read1127; read1127.setName("M00967_44_000000000-A3K85_1_1102_12486_25898"); + read1127.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTAAGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); read1127.setScores(scores); + rfastqReads.push_back(read1127); + FastqRead read1128; read1128.setName("M00967_44_000000000-A3K85_1_1102_20627_25927"); + read1128.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(28); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1128.setScores(scores); + rfastqReads.push_back(read1128); + FastqRead read1129; read1129.setName("M00967_44_000000000-A3K85_1_1102_16125_25967"); + read1129.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATACTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(36); scores.push_back(28); scores.push_back(34); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1129.setScores(scores); + rfastqReads.push_back(read1129); + FastqRead read1130; read1130.setName("M00967_44_000000000-A3K85_1_1102_21858_25971"); + read1130.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(29); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1130.setScores(scores); + rfastqReads.push_back(read1130); + FastqRead read1131; read1131.setName("M00967_44_000000000-A3K85_1_1102_7611_26146"); + read1131.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGACTACGCACCCCTTAAACCCCATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(36); scores.push_back(17); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(27); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1131.setScores(scores); + rfastqReads.push_back(read1131); + FastqRead read1132; read1132.setName("M00967_44_000000000-A3K85_1_1102_11609_26197"); + read1132.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTAAGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(26); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); read1132.setScores(scores); + rfastqReads.push_back(read1132); + FastqRead read1133; read1133.setName("M00967_44_000000000-A3K85_1_1102_23578_26267"); + read1133.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1133.setScores(scores); + rfastqReads.push_back(read1133); + FastqRead read1134; read1134.setName("M00967_44_000000000-A3K85_1_1102_21062_26588"); + read1134.setSeq("CCTGTTCGATACCCACACTTTCATGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCCATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGCTAAAGCTCGCATCCGCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(36); scores.push_back(34); scores.push_back(27); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1134.setScores(scores); + rfastqReads.push_back(read1134); + FastqRead read1135; read1135.setName("M00967_44_000000000-A3K85_1_1102_20584_26628"); + read1135.setSeq("ACTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGAATACTTCTCGCCCACTCGAGACCCGAAGTTTCAACGGCTGGCCGGGGTTGAGCCCCGCAATTTTCACGCTGACTTAGAAGGGCGCCTACGCACCCTTTAAATCCAATAAATCCGGATAACGCTAGCATCCTCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(31); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(16); scores.push_back(29); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(17); scores.push_back(17); scores.push_back(29); scores.push_back(33); scores.push_back(29); scores.push_back(17); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(31); scores.push_back(14); scores.push_back(27); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(27); scores.push_back(30); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); read1135.setScores(scores); + rfastqReads.push_back(read1135); + FastqRead read1136; read1136.setName("M00967_44_000000000-A3K85_1_1102_14504_26916"); + read1136.setSeq("CCTGTTCGATCCCCGCGCTTTCGTGCCTCAGCGTCAGTAGCGCTCCGGAAAGCCGCCTTCGCAATCGGGGTTCTTCGTGATATCTATGCATTTCACCGCTACACCACGAATTCCGCCTTCTTCTCGCCCACTCAAGCTCCACAGTTTCCACGGCCGTTCCGGGTTGAGCCCCGCATTTTTACCGCCAACTTTACACTCCGCCTACGCACCCCTTAAAACCAAGAAATCCGGATAACGCTCGCCCCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); read1136.setScores(scores); + rfastqReads.push_back(read1136); + FastqRead read1137; read1137.setName("M00967_44_000000000-A3K85_1_1102_13130_27044"); + read1137.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGTTGTGCCCCTCAAATTTACCCCTGCCTTAACGAATCCCCTACGCACCCTTTTAAACCAATAAATCCCGCTAAAGACCCCACCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); read1137.setScores(scores); + rfastqReads.push_back(read1137); + FastqRead read1138; read1138.setName("M00967_44_000000000-A3K85_1_1102_11409_27262"); + read1138.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGCAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(13); scores.push_back(31); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); read1138.setScores(scores); + rfastqReads.push_back(read1138); + FastqRead read1139; read1139.setName("M00967_44_000000000-A3K85_1_1102_21640_27300"); + read1139.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCCAATTTTGACGCTGAATTGGCAGCCCGCCTGCGGCCCCTTTCAAACCAATAAAAACGGAAAAAACACGCCCCCTCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(14); scores.push_back(36); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read1139.setScores(scores); + rfastqReads.push_back(read1139); + FastqRead read1140; read1140.setName("M00967_44_000000000-A3K85_1_1102_10152_27371"); + read1140.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACATCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1140.setScores(scores); + rfastqReads.push_back(read1140); + FastqRead read1141; read1141.setName("M00967_44_000000000-A3K85_1_1102_9655_27555"); + read1141.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCCAATTTTCCCCCCGACTTTGAATCCCCCCCGCGCACCCTTTAAAACCAAATAATCCGGGAAAAGCTCCCATCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); 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scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); read1141.setScores(scores); + rfastqReads.push_back(read1141); + FastqRead read1142; read1142.setName("M00967_44_000000000-A3K85_1_1102_11932_27788"); + read1142.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCAGTACCGGGGTTGAGCCCCGGGCTTTCACATCTGACTTGCCCTGCCACCTACGCACCCTTTACACCCAGTAAATCCGGATAACGCTTGCCTCCTACGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(20); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(27); scores.push_back(31); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); read1142.setScores(scores); + rfastqReads.push_back(read1142); + FastqRead read1143; read1143.setName("M00967_44_000000000-A3K85_1_1102_10822_27885"); + read1143.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCGCGCAGTTCCAAGAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTCCTGGCTTGCGCTGCCGTCTGCGCCCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1143.setScores(scores); + rfastqReads.push_back(read1143); + FastqRead read1144; read1144.setName("M00967_44_000000000-A3K85_1_1102_12475_28097"); + read1144.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGCAGAGGGTGGGGCTTCTCACTTTCTCCGCTACTTTACAGACGACCCACGCCCACATTTAAACCCAATAAATCCGGTATAACTCCCCCACCCCCA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(20); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(19); scores.push_back(31); scores.push_back(29); scores.push_back(36); scores.push_back(16); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(17); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); read1144.setScores(scores); + rfastqReads.push_back(read1144); + FastqRead read1145; read1145.setName("M00967_44_000000000-A3K85_1_1102_15269_28120"); + read1145.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGACGAGGGTGAGCCCCCCAATTTTACCGCTGACTTTAACTTCCGCCTGCGCACCCCTTAAACCCAAAAAAACCGGGATACGCTCGCATTCACCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(20); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); read1145.setScores(scores); + rfastqReads.push_back(read1145); + FastqRead read1146; read1146.setName("M00967_44_000000000-A3K85_1_1102_15327_28246"); + read1146.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGTGGAGCCCCTCCAATTTACCCCTTCCTCTACTGTCCGCCTCCGCAACCTTTACACCCAACAAATACCGATAAAACCCGCCTCCCCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(27); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read1146.setScores(scores); + rfastqReads.push_back(read1146); + FastqRead read1147; read1147.setName("M00967_44_000000000-A3K85_1_1102_13612_28569"); + read1147.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGAATTAACAGCCCGCCTCCGCACCCTTTAAAACCAATCAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(25); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); read1147.setScores(scores); + rfastqReads.push_back(read1147); + FastqRead read1148; read1148.setName("M00967_44_000000000-A3K85_1_1102_19080_28660"); + read1148.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACCGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCTCAACCTCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(29); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); read1148.setScores(scores); + rfastqReads.push_back(read1148); + FastqRead read1149; read1149.setName("M00967_44_000000000-A3K85_1_1102_15217_28768"); + read1149.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCAAGGGGTGGCCCCGGATTTTTACCGCTAAACTGTCAAAACACCCACGCAACCCCTCAAACCCACACATACAGCGCAAGCCCGCATCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(27); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); read1149.setScores(scores); + rfastqReads.push_back(read1149); + FastqRead read1150; read1150.setName("M00967_44_000000000-A3K85_1_1102_16028_28783"); + read1150.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCATCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCAAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(26); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1150.setScores(scores); + rfastqReads.push_back(read1150); + FastqRead read1151; read1151.setName("M00967_44_000000000-A3K85_1_1103_16176_1457"); + read1151.setSeq("ACTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTNCNNCCTGCGCACCCTTTAAACCACATAAATCCGGATAACCCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(20); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(19); 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scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1151.setScores(scores); + rfastqReads.push_back(read1151); + FastqRead read1152; read1152.setName("M00967_44_000000000-A3K85_1_1103_15035_1543"); + read1152.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCTGCTCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACCCCCAGTAATTCCGGCTAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1152.setScores(scores); + rfastqReads.push_back(read1152); + FastqRead read1153; read1153.setName("M00967_44_000000000-A3K85_1_1103_15030_1563"); + read1153.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAAGAATTCCACTTGCCTCTCCTGCACTCTAGCTGAGCAGTTTCTAAAGCATTCCCATAGTTGAGCTTTGGGTTTTCACTTCGGACTTGCTCTGCCACCTACTCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(27); scores.push_back(29); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(13); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1153.setScores(scores); + rfastqReads.push_back(read1153); + FastqRead read1154; read1154.setName("M00967_44_000000000-A3K85_1_1103_14269_1635"); + read1154.setSeq("GCTTATCGATTTGCAAGCTTTCGTTCCCCTGTTTCATTCGGCCGCCGATATCCTGTTTTCGCAATTGGAGTTCTGGGTGTGATCTATTCATGTTACCGCTACACGATGCATTCCGCATACTTCTCTCCCACTCAAGAACGCCAGCTCTCACGGCTCGTTGGTGTTGAGCTCCGCTTTTTTACCCATTACTTGCTTCCCTGTCTACGACCTCTTTAAACCCATAGAATCCGGATACCGTCCGCCCCTACCGT"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(29); 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scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(13); read1155.setScores(scores); + rfastqReads.push_back(read1155); + FastqRead read1156; read1156.setName("M00967_44_000000000-A3K85_1_1103_13556_2049"); + read1156.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(25); read1156.setScores(scores); + rfastqReads.push_back(read1156); + FastqRead read1157; read1157.setName("M00967_44_000000000-A3K85_1_1103_11904_2102"); + read1157.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGNNNNNNNNNNNNNNNNNNCNNCNNNNNNNNNNANNNNNNNNNNNNNNNNNNTNNNNNNNNNNNCNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNCNNCNNNNNNNNCANTCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(14); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(26); scores.push_back(26); scores.push_back(2); scores.push_back(2); scores.push_back(13); scores.push_back(2); scores.push_back(2); scores.push_back(25); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(25); scores.push_back(26); scores.push_back(2); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1157.setScores(scores); + rfastqReads.push_back(read1157); + FastqRead read1158; read1158.setName("M00967_44_000000000-A3K85_1_1103_19648_2389"); + read1158.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGTCATACAGTTTCAAAAGCAGTCCCGCAGTTGAGCCGCGGGCTTTCACTTCTGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1158.setScores(scores); + rfastqReads.push_back(read1158); + FastqRead read1159; read1159.setName("M00967_44_000000000-A3K85_1_1103_13799_2475"); + read1159.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1159.setScores(scores); + rfastqReads.push_back(read1159); + FastqRead read1160; read1160.setName("M00967_44_000000000-A3K85_1_1103_20712_2483"); + read1160.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGNNTNGANNCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(19); scores.push_back(19); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(2); scores.push_back(2); scores.push_back(27); scores.push_back(2); scores.push_back(27); scores.push_back(27); scores.push_back(2); scores.push_back(2); scores.push_back(27); scores.push_back(27); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(24); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(13); read1160.setScores(scores); + rfastqReads.push_back(read1160); + FastqRead read1161; read1161.setName("M00967_44_000000000-A3K85_1_1103_10052_2794"); + read1161.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGNNNNNNNNNCGANTTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1161.setScores(scores); + rfastqReads.push_back(read1161); + FastqRead read1162; read1162.setName("M00967_44_000000000-A3K85_1_1103_16040_2794"); + read1162.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1162.setScores(scores); + rfastqReads.push_back(read1162); + FastqRead read1163; read1163.setName("M00967_44_000000000-A3K85_1_1103_14729_2802"); + read1163.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1163.setScores(scores); + rfastqReads.push_back(read1163); + FastqRead read1164; read1164.setName("M00967_44_000000000-A3K85_1_1103_17195_2846"); + read1164.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGGGCCCGCAAATTTACCGCTGGCTTGGCATCCCGCCCGCGCCCCCTTTAAACCCCATAAAACACGACAACGCCCGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1164.setScores(scores); + rfastqReads.push_back(read1164); + FastqRead read1165; read1165.setName("M00967_44_000000000-A3K85_1_1103_14169_3164"); + read1165.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCTAATTTTACCGCTGACTTGGTTTTCCGCCTGGGCCCCCTTTAAACCCAATAAATCCGGGTAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); read1165.setScores(scores); + rfastqReads.push_back(read1165); + FastqRead read1166; read1166.setName("M00967_44_000000000-A3K85_1_1103_12088_3303"); + read1166.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(17); scores.push_back(16); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); read1166.setScores(scores); + rfastqReads.push_back(read1166); + FastqRead read1167; read1167.setName("M00967_44_000000000-A3K85_1_1103_16422_3350"); + read1167.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACACCGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1168.setScores(scores); + rfastqReads.push_back(read1168); + FastqRead read1169; read1169.setName("M00967_44_000000000-A3K85_1_1103_22196_3592"); + read1169.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1169.setScores(scores); + rfastqReads.push_back(read1169); + FastqRead read1170; read1170.setName("M00967_44_000000000-A3K85_1_1103_16331_3660"); + read1170.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCCACACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTAAACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1170.setScores(scores); + rfastqReads.push_back(read1170); + FastqRead read1171; read1171.setName("M00967_44_000000000-A3K85_1_1103_9295_3695"); + read1171.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCTAGTTATACAGTTTCAAAAGCAGTCCCGCAGTTGAGCCGCGGGCTTTCACTTCTGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(20); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(36); 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scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1171.setScores(scores); + rfastqReads.push_back(read1171); + FastqRead read1172; read1172.setName("M00967_44_000000000-A3K85_1_1103_23039_3733"); + read1172.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCTGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACACCCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(24); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read1172.setScores(scores); + rfastqReads.push_back(read1172); + FastqRead read1173; read1173.setName("M00967_44_000000000-A3K85_1_1103_19195_3867"); + read1173.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); read1173.setScores(scores); + rfastqReads.push_back(read1173); + FastqRead read1174; read1174.setName("M00967_44_000000000-A3K85_1_1103_10788_4000"); + read1174.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTAACGCTGACTTGGCAGGCCGCCTACGCACCCTTTTAAACCAATAAATCCGGGTTAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1174.setScores(scores); + rfastqReads.push_back(read1174); + FastqRead read1175; read1175.setName("M00967_44_000000000-A3K85_1_1103_8992_4423"); + read1175.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGTGGTGCCCGGGATTTTTTACCCTTGCTTTACAAACCGCCCACCCCCCCCCTTAAACCCACAAAAACCCGCAACACCCCCCCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); read1175.setScores(scores); + rfastqReads.push_back(read1175); + FastqRead read1176; read1176.setName("M00967_44_000000000-A3K85_1_1103_17459_4472"); + read1176.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGAGCCCCCCAATTTGACCGCTGGCTTGGCATCCCGGCCGCGCACCCCTTCAACCCAATAAATCCGGATACAGGCCGCCATCCTCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(19); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(20); scores.push_back(37); scores.push_back(32); scores.push_back(18); scores.push_back(18); scores.push_back(17); scores.push_back(17); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(17); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); read1176.setScores(scores); + rfastqReads.push_back(read1176); + FastqRead read1177; read1177.setName("M00967_44_000000000-A3K85_1_1103_17449_4602"); + read1177.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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+ scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1178.setScores(scores); + rfastqReads.push_back(read1178); + FastqRead read1179; read1179.setName("M00967_44_000000000-A3K85_1_1103_12981_4751"); + read1179.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTCAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(28); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read1179.setScores(scores); + rfastqReads.push_back(read1179); + FastqRead read1180; read1180.setName("M00967_44_000000000-A3K85_1_1103_9233_4796"); + read1180.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); 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scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); read1180.setScores(scores); + rfastqReads.push_back(read1180); + FastqRead read1181; read1181.setName("M00967_44_000000000-A3K85_1_1103_16944_4809"); + read1181.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1181.setScores(scores); + rfastqReads.push_back(read1181); + FastqRead read1182; read1182.setName("M00967_44_000000000-A3K85_1_1103_16552_4854"); + read1182.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(24); read1182.setScores(scores); + rfastqReads.push_back(read1182); + FastqRead read1183; read1183.setName("M00967_44_000000000-A3K85_1_1103_9737_5004"); + read1183.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGATGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTTACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1183.setScores(scores); + rfastqReads.push_back(read1183); + FastqRead read1184; read1184.setName("M00967_44_000000000-A3K85_1_1103_21943_5012"); + read1184.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1184.setScores(scores); + rfastqReads.push_back(read1184); + FastqRead read1185; read1185.setName("M00967_44_000000000-A3K85_1_1103_17872_5018"); + read1185.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTGGAGGCCCCCAAATTGAACGCTGACTTTGCATCCCGCCTGCGCACCCTTTAAAACCAATAAATCCCGATAAAGCCCGCCTCCCCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); read1185.setScores(scores); + rfastqReads.push_back(read1185); + FastqRead read1186; read1186.setName("M00967_44_000000000-A3K85_1_1103_21336_5022"); + read1186.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTACATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1186.setScores(scores); + rfastqReads.push_back(read1186); + FastqRead read1187; read1187.setName("M00967_44_000000000-A3K85_1_1103_16401_5096"); + read1187.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAATGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); 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scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1187.setScores(scores); + rfastqReads.push_back(read1187); + FastqRead read1188; read1188.setName("M00967_44_000000000-A3K85_1_1103_10037_5177"); + read1188.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTTACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCCGATCAAGCTCCCAACCTCCCA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); read1188.setScores(scores); + rfastqReads.push_back(read1188); + FastqRead read1189; read1189.setName("M00967_44_000000000-A3K85_1_1103_14484_5243"); + read1189.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1189.setScores(scores); + rfastqReads.push_back(read1189); + FastqRead read1190; read1190.setName("M00967_44_000000000-A3K85_1_1103_9186_5372"); + read1190.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); 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scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); read1190.setScores(scores); + rfastqReads.push_back(read1190); + FastqRead read1191; read1191.setName("M00967_44_000000000-A3K85_1_1103_19892_5374"); + read1191.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1191.setScores(scores); + rfastqReads.push_back(read1191); + FastqRead read1192; read1192.setName("M00967_44_000000000-A3K85_1_1103_16230_5574"); + read1192.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGAATTGATTTTTCGCCTGCGCCCCCTTTAAAACCAATAAATCCGGATAACCCCCGCAACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(31); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); read1192.setScores(scores); + rfastqReads.push_back(read1192); + FastqRead read1193; read1193.setName("M00967_44_000000000-A3K85_1_1103_25080_5623"); + read1193.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGTTGAGCCCCGACATTTTACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCCGCTAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(25); read1193.setScores(scores); + rfastqReads.push_back(read1193); + FastqRead read1194; read1194.setName("M00967_44_000000000-A3K85_1_1103_15278_5700"); + read1194.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGCTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1194.setScores(scores); + rfastqReads.push_back(read1194); + FastqRead read1195; read1195.setName("M00967_44_000000000-A3K85_1_1103_10510_5756"); + read1195.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(27); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1195.setScores(scores); + rfastqReads.push_back(read1195); + FastqRead read1196; read1196.setName("M00967_44_000000000-A3K85_1_1103_22433_5765"); + read1196.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(25); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(30); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(28); scores.push_back(29); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1196.setScores(scores); + rfastqReads.push_back(read1196); + FastqRead read1197; read1197.setName("M00967_44_000000000-A3K85_1_1103_10468_5827"); + read1197.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAGAGGGTGGGCCCCTCCAATTTTCCGCTTCCTTTACTTTCCGCCCTCCCACCCCTTAAAACCCATAAAACAGCATAAAGCCCCCCTCATCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1197.setScores(scores); + rfastqReads.push_back(read1197); + FastqRead read1198; read1198.setName("M00967_44_000000000-A3K85_1_1103_13969_5837"); + read1198.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1198.setScores(scores); + rfastqReads.push_back(read1198); + FastqRead read1199; read1199.setName("M00967_44_000000000-A3K85_1_1103_22183_5860"); + read1199.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGGTGCGCCCCGACATTTGCCCGCTGACTTTACCGCCCGCCTACCCACCCTTAAAACCCCATAAATCCCGGTAAACCCCCCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); read1199.setScores(scores); + rfastqReads.push_back(read1199); + FastqRead read1200; read1200.setName("M00967_44_000000000-A3K85_1_1103_8892_5909"); + read1200.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCGAGCAGTTCCAAGAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTCCTGGCTTGCGCTGCCGTCTGCGCCCCCTTTACACCCAGTACATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1200.setScores(scores); + rfastqReads.push_back(read1200); + FastqRead read1201; read1201.setName("M00967_44_000000000-A3K85_1_1103_20600_5943"); + read1201.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAACCCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(24); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(29); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(26); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); read1201.setScores(scores); + rfastqReads.push_back(read1201); + FastqRead read1202; read1202.setName("M00967_44_000000000-A3K85_1_1103_18613_5969"); + read1202.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCCCGCATTCCGCGTACTTCTCGCCCACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCCTTAAACCCAACAAATCCGGATAACGCTCGCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1202.setScores(scores); + rfastqReads.push_back(read1202); + FastqRead read1203; read1203.setName("M00967_44_000000000-A3K85_1_1103_11964_5972"); + read1203.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTCCACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); read1203.setScores(scores); + rfastqReads.push_back(read1203); + FastqRead read1204; read1204.setName("M00967_44_000000000-A3K85_1_1103_23719_6018"); + read1204.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1204.setScores(scores); + rfastqReads.push_back(read1204); + FastqRead read1205; read1205.setName("M00967_44_000000000-A3K85_1_1103_15108_6040"); + read1205.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCCCCTACGCCCCCTTTAAACCCAATAAATCCGGAAAACCCCCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); read1205.setScores(scores); + rfastqReads.push_back(read1205); + FastqRead read1206; read1206.setName("M00967_44_000000000-A3K85_1_1103_10121_6076"); + read1206.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCCATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCCGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCTCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); 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scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(25); read1206.setScores(scores); + rfastqReads.push_back(read1206); + FastqRead read1207; read1207.setName("M00967_44_000000000-A3K85_1_1103_8420_6115"); + read1207.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCCGCGTCCGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(33); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(24); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(32); read1207.setScores(scores); + rfastqReads.push_back(read1207); + FastqRead read1208; read1208.setName("M00967_44_000000000-A3K85_1_1103_6717_6130"); + read1208.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGACCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(20); scores.push_back(20); scores.push_back(18); scores.push_back(17); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); read1208.setScores(scores); + rfastqReads.push_back(read1208); + FastqRead read1209; read1209.setName("M00967_44_000000000-A3K85_1_1103_21228_6156"); + read1209.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); read1209.setScores(scores); + rfastqReads.push_back(read1209); + FastqRead read1210; read1210.setName("M00967_44_000000000-A3K85_1_1103_6793_6256"); + read1210.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCCCTTTTACGGTTGAGCCGCAAACTTTCCCAACTGCCTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); 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scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(17); scores.push_back(33); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(17); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(14); scores.push_back(30); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1210.setScores(scores); + rfastqReads.push_back(read1210); + FastqRead read1211; read1211.setName("M00967_44_000000000-A3K85_1_1103_25376_6286"); + read1211.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1211.setScores(scores); + rfastqReads.push_back(read1211); + FastqRead read1212; read1212.setName("M00967_44_000000000-A3K85_1_1103_14034_6351"); + read1212.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1212.setScores(scores); + rfastqReads.push_back(read1212); + FastqRead read1213; read1213.setName("M00967_44_000000000-A3K85_1_1103_19209_6395"); + read1213.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1213.setScores(scores); + rfastqReads.push_back(read1213); + FastqRead read1214; read1214.setName("M00967_44_000000000-A3K85_1_1103_24543_6404"); + read1214.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(32); read1214.setScores(scores); + rfastqReads.push_back(read1214); + FastqRead read1215; read1215.setName("M00967_44_000000000-A3K85_1_1103_7168_6417"); + read1215.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGGGCCCCCAAATTTTACCGCTGACCTGGGCGTCCCCCCGCGCGCCCCTTAAAACCAAAAAAACCGGTGACAGCCTGCCTCCCCCTT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(28); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(13); read1215.setScores(scores); + rfastqReads.push_back(read1215); + FastqRead read1216; read1216.setName("M00967_44_000000000-A3K85_1_1103_7188_6426"); + read1216.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCCCCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTTCGCCCCCCAATATTCACCTTTCCTCGGCAGCCCGCCCGCGGCACCTCTAAAACCAACAACTCCGGGTATCGCCCCCCTCCACCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(18); scores.push_back(32); scores.push_back(20); scores.push_back(32); scores.push_back(33); scores.push_back(19); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(20); scores.push_back(20); scores.push_back(33); scores.push_back(33); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(14); 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scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); read1216.setScores(scores); + rfastqReads.push_back(read1216); + FastqRead read1217; read1217.setName("M00967_44_000000000-A3K85_1_1103_9179_6566"); + read1217.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1217.setScores(scores); + rfastqReads.push_back(read1217); + FastqRead read1218; read1218.setName("M00967_44_000000000-A3K85_1_1103_15717_6589"); + read1218.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCCGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(27); read1218.setScores(scores); + rfastqReads.push_back(read1218); + FastqRead read1219; read1219.setName("M00967_44_000000000-A3K85_1_1103_9938_6608"); + read1219.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); read1220.setScores(scores); + rfastqReads.push_back(read1220); + FastqRead read1221; read1221.setName("M00967_44_000000000-A3K85_1_1103_11425_6670"); + read1221.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGTCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); read1221.setScores(scores); + rfastqReads.push_back(read1221); + FastqRead read1222; read1222.setName("M00967_44_000000000-A3K85_1_1103_10233_6672"); + read1222.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1222.setScores(scores); + rfastqReads.push_back(read1222); + FastqRead read1223; read1223.setName("M00967_44_000000000-A3K85_1_1103_24986_6678"); + read1223.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGCGCCCCTCAATTTTACCGCTGAATTGATCTTCCGACTGCGCACCCTTTTAACCCAATAAATCCCGATAAAGCTCGCGTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); read1223.setScores(scores); + rfastqReads.push_back(read1223); + FastqRead read1224; read1224.setName("M00967_44_000000000-A3K85_1_1103_21822_6728"); + read1224.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(13); read1224.setScores(scores); + rfastqReads.push_back(read1224); + FastqRead read1225; read1225.setName("M00967_44_000000000-A3K85_1_1103_8324_6833"); + read1225.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTCACGGACCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATCACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1225.setScores(scores); + rfastqReads.push_back(read1225); + FastqRead read1226; read1226.setName("M00967_44_000000000-A3K85_1_1103_14878_6847"); + read1226.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); read1226.setScores(scores); + rfastqReads.push_back(read1226); + FastqRead read1227; read1227.setName("M00967_44_000000000-A3K85_1_1103_23038_6857"); + read1227.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGCTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATCAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(25); read1227.setScores(scores); + rfastqReads.push_back(read1227); + FastqRead read1228; read1228.setName("M00967_44_000000000-A3K85_1_1103_18648_6959"); + read1228.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCCCTCCAGTACTCTAGCCGCACAGTTTCCAGAGCAGTTCCGGGGTTGGGCCCCGGGCTTTCACTCCAGACTTGCACTGCCGTCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1228.setScores(scores); + rfastqReads.push_back(read1228); + FastqRead read1229; read1229.setName("M00967_44_000000000-A3K85_1_1103_22675_7047"); + read1229.setSeq("CCTGTTCGATACCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGACGGGGTTGAGCCCCCCCATTTTCCTGCTGACTTGGCATCCCGCCTGCGCACCCTTTTAACCCAATAAAACCGGATAAAGCCCGCATTCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1229.setScores(scores); + rfastqReads.push_back(read1229); + FastqRead read1230; read1230.setName("M00967_44_000000000-A3K85_1_1103_12738_7087"); + read1230.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGGGCCCCCACATTTGACCCCTGACTTGGCATCCCGCCTGCGCCCCCCTTAAACCCAATAAATCCGGGTAACGCCCGCCTCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read1230.setScores(scores); + rfastqReads.push_back(read1230); + FastqRead read1231; read1231.setName("M00967_44_000000000-A3K85_1_1103_17138_7147"); + read1231.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCCACGCACCCTTTAAACCCAATAAATCCGGTTAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(28); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(13); read1231.setScores(scores); + rfastqReads.push_back(read1231); + FastqRead read1232; read1232.setName("M00967_44_000000000-A3K85_1_1103_20997_7165"); + read1232.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1232.setScores(scores); + rfastqReads.push_back(read1232); + FastqRead read1233; read1233.setName("M00967_44_000000000-A3K85_1_1103_20629_7213"); + read1233.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1233.setScores(scores); + rfastqReads.push_back(read1233); + FastqRead read1234; read1234.setName("M00967_44_000000000-A3K85_1_1103_18680_7276"); + read1234.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGGTCTTCCGCCTGCGCACCCTTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read1234.setScores(scores); + rfastqReads.push_back(read1234); + FastqRead read1235; read1235.setName("M00967_44_000000000-A3K85_1_1103_6942_7296"); + read1235.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCCGCACTCCAGCCATGCAGTTCCAAGGGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACCCCTGGCTTGCATGGCCGTCTACGCTCCCTTTACACCCAGTGAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(30); read1235.setScores(scores); + rfastqReads.push_back(read1235); + FastqRead read1236; read1236.setName("M00967_44_000000000-A3K85_1_1103_21455_7343"); + read1236.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(33); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1236.setScores(scores); + rfastqReads.push_back(read1236); + FastqRead read1237; read1237.setName("M00967_44_000000000-A3K85_1_1103_18242_7492"); + read1237.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); read1237.setScores(scores); + rfastqReads.push_back(read1237); + FastqRead read1238; read1238.setName("M00967_44_000000000-A3K85_1_1103_22951_7512"); + read1238.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTAATATTTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGATGAACAGTTTCGATCGCAGCTATGGGTTAAGCCCATAGATTTCACAGTCGACTTGCTCTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(16); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(31); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1238.setScores(scores); + rfastqReads.push_back(read1238); + FastqRead read1239; read1239.setName("M00967_44_000000000-A3K85_1_1103_10319_7544"); + read1239.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(13); read1239.setScores(scores); + rfastqReads.push_back(read1239); + FastqRead read1240; read1240.setName("M00967_44_000000000-A3K85_1_1103_6904_7573"); + read1240.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATCAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); read1240.setScores(scores); + rfastqReads.push_back(read1240); + FastqRead read1241; read1241.setName("M00967_44_000000000-A3K85_1_1103_7301_7685"); + read1241.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGAATTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1241.setScores(scores); + rfastqReads.push_back(read1241); + FastqRead read1242; read1242.setName("M00967_44_000000000-A3K85_1_1103_15808_7721"); + read1242.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); read1242.setScores(scores); + rfastqReads.push_back(read1242); + FastqRead read1243; read1243.setName("M00967_44_000000000-A3K85_1_1103_11333_7738"); + read1243.setSeq("CCTGTTCTATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1243.setScores(scores); + rfastqReads.push_back(read1243); + FastqRead read1244; read1244.setName("M00967_44_000000000-A3K85_1_1103_19977_7746"); + read1244.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(13); read1244.setScores(scores); + rfastqReads.push_back(read1244); + FastqRead read1245; read1245.setName("M00967_44_000000000-A3K85_1_1103_16226_7784"); + read1245.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGGTGAGCCCCCGCATTTTACCGCTGGCTTAACAGCCCGCCTACGCCCCCCTTAAACCCAATAAAACCGGGTAACGCCCGCACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); read1245.setScores(scores); + rfastqReads.push_back(read1245); + FastqRead read1246; read1246.setName("M00967_44_000000000-A3K85_1_1103_19682_7793"); + read1246.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTGGGCCCCCCCATTTGCCCACTTACTTAACGATCCGCCTACGCACCCCTTTAACCCCATAAATCCGGATAAAGCTCGCCTCCTCCC"); 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scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); read1246.setScores(scores); + rfastqReads.push_back(read1246); + FastqRead read1247; read1247.setName("M00967_44_000000000-A3K85_1_1103_16758_7846"); + read1247.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGTTGGGCCCGGGATTTTTTCCGCTGACTTGACAAACCGCCCACGCACCCCTTCAAACCAATAAAACCCGACAACGCCCCCCTCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); read1247.setScores(scores); + rfastqReads.push_back(read1247); + FastqRead read1248; read1248.setName("M00967_44_000000000-A3K85_1_1103_24319_7847"); + read1248.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACCCCCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); 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scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read1248.setScores(scores); + rfastqReads.push_back(read1248); + FastqRead read1249; read1249.setName("M00967_44_000000000-A3K85_1_1103_25660_7945"); + read1249.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCCGGCCGGGGTTGCGCCCCGACATTTGACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); 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scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(28); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(29); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); read1249.setScores(scores); + rfastqReads.push_back(read1249); + FastqRead read1250; read1250.setName("M00967_44_000000000-A3K85_1_1103_26739_8041"); + read1250.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1250.setScores(scores); + rfastqReads.push_back(read1250); + FastqRead read1251; read1251.setName("M00967_44_000000000-A3K85_1_1103_22137_8043"); + read1251.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(13); read1251.setScores(scores); + rfastqReads.push_back(read1251); + FastqRead read1252; read1252.setName("M00967_44_000000000-A3K85_1_1103_26625_8082"); + read1252.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCTAGCTACTCAGTTTCAAAAGCAGTCCCAAGGTTGAGCCCTGGGTTTTCACTTCTGACTTGATTAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); read1252.setScores(scores); + rfastqReads.push_back(read1252); + FastqRead read1253; read1253.setName("M00967_44_000000000-A3K85_1_1103_12693_8090"); + read1253.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGCAAACCCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(32); read1253.setScores(scores); + rfastqReads.push_back(read1253); + FastqRead read1254; read1254.setName("M00967_44_000000000-A3K85_1_1103_7037_8136"); + read1254.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); read1254.setScores(scores); + rfastqReads.push_back(read1254); + FastqRead read1255; read1255.setName("M00967_44_000000000-A3K85_1_1103_18917_8147"); + read1255.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGTTCAACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCTAAACCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1255.setScores(scores); + rfastqReads.push_back(read1255); + FastqRead read1256; read1256.setName("M00967_44_000000000-A3K85_1_1103_18414_8219"); + read1256.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1256.setScores(scores); + rfastqReads.push_back(read1256); + FastqRead read1257; read1257.setName("M00967_44_000000000-A3K85_1_1103_10821_8368"); + read1257.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(24); read1257.setScores(scores); + rfastqReads.push_back(read1257); + FastqRead read1258; read1258.setName("M00967_44_000000000-A3K85_1_1103_18384_8446"); + read1258.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGCCCCGAAATTTTACCGCCGACTTGGCCTCCCGCCCGCGCACCCCTTAAACCCAATAAAACCGGGTAAAGCTCCCCTCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); read1258.setScores(scores); + rfastqReads.push_back(read1258); + FastqRead read1259; read1259.setName("M00967_44_000000000-A3K85_1_1103_15582_8461"); + read1259.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1259.setScores(scores); + rfastqReads.push_back(read1259); + FastqRead read1260; read1260.setName("M00967_44_000000000-A3K85_1_1103_9199_8564"); + read1260.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1260.setScores(scores); + rfastqReads.push_back(read1260); + FastqRead read1261; read1261.setName("M00967_44_000000000-A3K85_1_1103_25782_8729"); + read1261.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCAGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); 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scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); read1261.setScores(scores); + rfastqReads.push_back(read1261); + FastqRead read1262; read1262.setName("M00967_44_000000000-A3K85_1_1103_14640_8834"); + read1262.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTGCCGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTACCCCTCCCGCACTCTAGATCCCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCCGCGGCATTTCACTCCAGACTTGTCGCACCGGCTACGCGCCCTTTACACCCAGTAAATCCGGACAACGCCTGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(35); scores.push_back(20); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(27); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1262.setScores(scores); + rfastqReads.push_back(read1262); + FastqRead read1263; read1263.setName("M00967_44_000000000-A3K85_1_1103_27298_8883"); + read1263.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCCCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(17); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(19); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); read1263.setScores(scores); + rfastqReads.push_back(read1263); + FastqRead read1264; read1264.setName("M00967_44_000000000-A3K85_1_1103_4824_8949"); + read1264.setSeq("CCTGTTCGCTACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCCTTAAACCCAATCAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(29); scores.push_back(14); scores.push_back(30); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(31); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); read1264.setScores(scores); + rfastqReads.push_back(read1264); + FastqRead read1265; read1265.setName("M00967_44_000000000-A3K85_1_1103_24749_9012"); + read1265.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATACGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1265.setScores(scores); + rfastqReads.push_back(read1265); + FastqRead read1266; read1266.setName("M00967_44_000000000-A3K85_1_1103_25347_9123"); + read1266.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1266.setScores(scores); + rfastqReads.push_back(read1266); + FastqRead read1267; read1267.setName("M00967_44_000000000-A3K85_1_1103_21446_9321"); + read1267.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTGAGCCCCCAAAATTGAACGCTGGATTGGCATCCCGCCTGCCCCCCCCTTAAACCCAATAAAACCGGATAACGCCCCCCACCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); read1267.setScores(scores); + rfastqReads.push_back(read1267); + FastqRead read1268; read1268.setName("M00967_44_000000000-A3K85_1_1103_18608_9367"); + read1268.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1268.setScores(scores); + rfastqReads.push_back(read1268); + FastqRead read1269; read1269.setName("M00967_44_000000000-A3K85_1_1103_13848_9407"); + read1269.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(26); read1269.setScores(scores); + rfastqReads.push_back(read1269); + FastqRead read1270; read1270.setName("M00967_44_000000000-A3K85_1_1103_3944_9581"); + read1270.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(25); read1270.setScores(scores); + rfastqReads.push_back(read1270); + FastqRead read1271; read1271.setName("M00967_44_000000000-A3K85_1_1103_7934_9596"); + read1271.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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read1272.setName("M00967_44_000000000-A3K85_1_1103_15136_9597"); + read1272.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGGGCTACAGTTTCAAATGCAGTTCCGGGGTTGAGCCCCGGGATTTCACATCTGACTTGCAGCTCCGCCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1272.setScores(scores); + rfastqReads.push_back(read1272); + FastqRead read1273; read1273.setName("M00967_44_000000000-A3K85_1_1103_8102_9598"); + read1273.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGAACTTCCGCATGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1273.setScores(scores); + rfastqReads.push_back(read1273); + FastqRead read1274; read1274.setName("M00967_44_000000000-A3K85_1_1103_27328_9706"); + read1274.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(33); 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scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); read1274.setScores(scores); + rfastqReads.push_back(read1274); + FastqRead read1275; read1275.setName("M00967_44_000000000-A3K85_1_1103_17645_9714"); + read1275.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1275.setScores(scores); + rfastqReads.push_back(read1275); + FastqRead read1276; read1276.setName("M00967_44_000000000-A3K85_1_1103_27341_9719"); + read1276.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTCCACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(34); scores.push_back(27); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); read1276.setScores(scores); + rfastqReads.push_back(read1276); + FastqRead read1277; read1277.setName("M00967_44_000000000-A3K85_1_1103_6782_9724"); + read1277.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGTTTAGCCCCCACATTTGACCGCCGACTTAACAGCCCGCCTACGCGCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCCCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); read1277.setScores(scores); + rfastqReads.push_back(read1277); + FastqRead read1278; read1278.setName("M00967_44_000000000-A3K85_1_1103_6099_9759"); + read1278.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(32); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); read1278.setScores(scores); + rfastqReads.push_back(read1278); + FastqRead read1279; read1279.setName("M00967_44_000000000-A3K85_1_1103_8333_9775"); + read1279.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(13); read1279.setScores(scores); + rfastqReads.push_back(read1279); + FastqRead read1280; read1280.setName("M00967_44_000000000-A3K85_1_1103_8401_9780"); + read1280.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGAGCCCCCCAATTTTACCCCTGACTTAACTGTCCGCCTACGCACCCCTTAAACCCAATAAAAACGGATAACGCTCCCAACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(40); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); read1280.setScores(scores); + rfastqReads.push_back(read1280); + FastqRead read1281; read1281.setName("M00967_44_000000000-A3K85_1_1103_23320_9784"); + read1281.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACCCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); read1282.setScores(scores); + rfastqReads.push_back(read1282); + FastqRead read1283; read1283.setName("M00967_44_000000000-A3K85_1_1103_15522_9957"); + read1283.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCCAGCTACACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGCTAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1283.setScores(scores); + rfastqReads.push_back(read1283); + FastqRead read1284; read1284.setName("M00967_44_000000000-A3K85_1_1103_5428_9992"); + read1284.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1284.setScores(scores); + rfastqReads.push_back(read1284); + FastqRead read1285; read1285.setName("M00967_44_000000000-A3K85_1_1103_5592_10012"); + read1285.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); read1285.setScores(scores); + rfastqReads.push_back(read1285); + FastqRead read1286; read1286.setName("M00967_44_000000000-A3K85_1_1103_24939_10063"); + read1286.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGCCCCCCAATTTTCACGCTTCCTCTGCAACCCCCCCGCGGCCCCCTTTAACACAAAAAATACGGGTAAACCTCCCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(29); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); read1286.setScores(scores); + rfastqReads.push_back(read1286); + FastqRead read1287; read1287.setName("M00967_44_000000000-A3K85_1_1103_28776_10102"); + read1287.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTNATANCTANNCATTTCACCGCTACACNACGCATTCCGNNNACTNCTCGCCAACNCAAGTCTGCCAGTTTCNACNNCTNGACGGGNNNNNNNNNNNNNNNTTTACCGCTGGCTTAACGGACCGCCTACGCACCCTTTTAACCTAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(36); 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scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1288.setScores(scores); + rfastqReads.push_back(read1288); + FastqRead read1289; read1289.setName("M00967_44_000000000-A3K85_1_1103_6856_10138"); + read1289.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(28); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); read1289.setScores(scores); + rfastqReads.push_back(read1289); + FastqRead read1290; read1290.setName("M00967_44_000000000-A3K85_1_1103_12892_10199"); + read1290.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCCTCGCACCCTTTAAACCCAATTAATCCGGATAACGCCCCCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1290.setScores(scores); + rfastqReads.push_back(read1290); + FastqRead read1291; read1291.setName("M00967_44_000000000-A3K85_1_1103_9328_10229"); + read1291.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCTAAGAGGTTGAGCCCCCCAACTTTACCGCCGACTTGAACTTCCGCCCGCCCTCCCCTTTAACCCCAGTAATTCGGGTTACGCCCTCCTCCTCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1291.setScores(scores); + rfastqReads.push_back(read1291); + FastqRead read1292; read1292.setName("M00967_44_000000000-A3K85_1_1103_18409_10285"); + read1292.setSeq("CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGGGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGCCTTGCATCACCGTCTACGCTCCCTTTACCCCCAGTAATTCCGGATACCGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(30); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1292.setScores(scores); + rfastqReads.push_back(read1292); + FastqRead read1293; read1293.setName("M00967_44_000000000-A3K85_1_1103_26783_10286"); + read1293.setSeq("CCTGTTTTCTCCCAATACTCTCGAGCATCAACGTCAGTTACCGTCCTGTAAGCCGCCTTTGCGACCGGTGTCCCTCCTAATATCTACGCATTTCCCCGCCTCACCAGGATTTCCACTTACCATTCCTGCACTCCACTCATACAGTTTACAAAACAGCCCCGGGTCTTCCCCCCCGCATTTCCATTTCGACATGCATCCCCGCCTATGCACCCCCTACCCCCTGTATACCCGCCCTTCCCTTGCCCCCTCC"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(18); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(18); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(17); scores.push_back(32); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(27); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(17); scores.push_back(16); scores.push_back(31); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(16); scores.push_back(15); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(29); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(14); scores.push_back(28); scores.push_back(25); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(24); read1293.setScores(scores); + rfastqReads.push_back(read1293); + FastqRead read1294; read1294.setName("M00967_44_000000000-A3K85_1_1103_11485_10402"); + read1294.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1294.setScores(scores); + rfastqReads.push_back(read1294); + FastqRead read1295; read1295.setName("M00967_44_000000000-A3K85_1_1103_24812_10436"); + read1295.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACCCTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTACCATCACCGCCTACGCTCCCTTTCCCCCCCGTAAATCCGGCTAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); 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scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(13); read1295.setScores(scores); + rfastqReads.push_back(read1295); + FastqRead read1296; read1296.setName("M00967_44_000000000-A3K85_1_1103_10377_10477"); + read1296.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(25); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1296.setScores(scores); + rfastqReads.push_back(read1296); + FastqRead read1297; read1297.setName("M00967_44_000000000-A3K85_1_1103_21285_10511"); + read1297.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATACATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); read1297.setScores(scores); + rfastqReads.push_back(read1297); + FastqRead read1298; read1298.setName("M00967_44_000000000-A3K85_1_1103_11360_10556"); + read1298.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(28); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1298.setScores(scores); + rfastqReads.push_back(read1298); + FastqRead read1299; read1299.setName("M00967_44_000000000-A3K85_1_1103_15421_10557"); + read1299.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTAACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1299.setScores(scores); + rfastqReads.push_back(read1299); + FastqRead read1300; read1300.setName("M00967_44_000000000-A3K85_1_1103_25286_10559"); + read1300.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1300.setScores(scores); + rfastqReads.push_back(read1300); + FastqRead read1301; read1301.setName("M00967_44_000000000-A3K85_1_1103_12760_10601"); + read1301.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGCTGCAGTTTTGAGTGCGACTATCGGTTGAGCCGGTAGTTTTGACACCCAACTTGCATCCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1301.setScores(scores); + rfastqReads.push_back(read1301); + FastqRead read1302; read1302.setName("M00967_44_000000000-A3K85_1_1103_9066_10619"); + read1302.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1302.setScores(scores); + rfastqReads.push_back(read1302); + FastqRead read1303; read1303.setName("M00967_44_000000000-A3K85_1_1103_18120_10646"); + read1303.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCAATTTGACCGCTGACTTCACAGGCCGCCGACGCCCCCCTTAAAACCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(25); scores.push_back(12); read1303.setScores(scores); + rfastqReads.push_back(read1303); + FastqRead read1304; read1304.setName("M00967_44_000000000-A3K85_1_1103_5698_10687"); + read1304.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGTGAGTCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTCACCTCTCCTGCACTCCAGCTCAACAGTTTTAGATGCAGTTCCGCGGTTGAGCCGCGGGATTTCACATCTAACTTATTAAGCCGCCTACACTCCCTTTACGCCCAGTCATTCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1304.setScores(scores); + rfastqReads.push_back(read1304); + FastqRead read1305; read1305.setName("M00967_44_000000000-A3K85_1_1103_11293_10689"); + read1305.setSeq("CCTATTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCGCCCCTTAAACCCAATAAAACCGGATAACGCCACCAACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(29); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); read1305.setScores(scores); + rfastqReads.push_back(read1305); + FastqRead read1306; read1306.setName("M00967_44_000000000-A3K85_1_1103_11518_10893"); + read1306.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCTAGCTACTCAGTTTCAAAAGCAGTCCCAAGGTTGAGCCCTGGGTTTTCACTTCTGACTTGATTAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTACCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1306.setScores(scores); + rfastqReads.push_back(read1306); + FastqRead read1307; read1307.setName("M00967_44_000000000-A3K85_1_1103_5776_10916"); + read1307.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(29); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(32); read1307.setScores(scores); + rfastqReads.push_back(read1307); + FastqRead read1308; read1308.setName("M00967_44_000000000-A3K85_1_1103_22681_10930"); + read1308.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); 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scores.push_back(35); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1308.setScores(scores); + rfastqReads.push_back(read1308); + FastqRead read1309; read1309.setName("M00967_44_000000000-A3K85_1_1103_9113_10930"); + read1309.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1309.setScores(scores); + rfastqReads.push_back(read1309); + FastqRead read1310; read1310.setName("M00967_44_000000000-A3K85_1_1103_25968_11012"); + read1310.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGAGCCCCTCCATTTTACCGCTGACTTTACCGTCCGCCCACGCACCCTTTAAACCCAATAAATCCCGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1311.setScores(scores); + rfastqReads.push_back(read1311); + FastqRead read1312; read1312.setName("M00967_44_000000000-A3K85_1_1103_24652_11069"); + read1312.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGCCCCGCAAATTGACCGCTGACTTGGCCTCCCGCCTGCGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read1312.setScores(scores); + rfastqReads.push_back(read1312); + FastqRead read1313; read1313.setName("M00967_44_000000000-A3K85_1_1103_19812_11148"); + read1313.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAGGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGCGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(12); read1313.setScores(scores); + rfastqReads.push_back(read1313); + FastqRead read1314; read1314.setName("M00967_44_000000000-A3K85_1_1103_28989_11149"); + read1314.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGGGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); read1314.setScores(scores); + rfastqReads.push_back(read1314); + FastqRead read1315; read1315.setName("M00967_44_000000000-A3K85_1_1103_21260_11157"); + read1315.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGTTGTGCCCCCCCATTTTTCCCCTTCCTTAACGAACCGCCCACGCACCCCTTTAAACCCACAAATCCCGATAACGCCCGCCTCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(28); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); read1315.setScores(scores); + rfastqReads.push_back(read1315); + FastqRead read1316; read1316.setName("M00967_44_000000000-A3K85_1_1103_8886_11261"); + read1316.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCCGGTGTCGCCCCCGACTTTTTCCGCTGCCTTTTCCAAACCCCCCCGCGCCCCCTCACACCCCTAAAACCGGCTAAAACTCCCACACCCCC"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); read1316.setScores(scores); + rfastqReads.push_back(read1316); + FastqRead read1317; read1317.setName("M00967_44_000000000-A3K85_1_1103_22854_11267"); + read1317.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCACTTCAGACTTGCTTAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(18); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); 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scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(12); read1317.setScores(scores); + rfastqReads.push_back(read1317); + FastqRead read1318; read1318.setName("M00967_44_000000000-A3K85_1_1103_5785_11267"); + read1318.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCTTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCAAGCCCTACAGTTTCAAAAGCAGTTCACGGGTTAAGCCCATGGATTTCACTTCTGACTTGCTAGGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1318.setScores(scores); + rfastqReads.push_back(read1318); + FastqRead read1319; read1319.setName("M00967_44_000000000-A3K85_1_1103_19911_11294"); + read1319.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(12); read1319.setScores(scores); + rfastqReads.push_back(read1319); + FastqRead read1320; read1320.setName("M00967_44_000000000-A3K85_1_1103_7383_11335"); + read1320.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCCTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCCCAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(28); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); read1320.setScores(scores); + rfastqReads.push_back(read1320); + FastqRead read1321; read1321.setName("M00967_44_000000000-A3K85_1_1103_16461_11423"); + read1321.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(26); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1321.setScores(scores); + rfastqReads.push_back(read1321); + FastqRead read1322; read1322.setName("M00967_44_000000000-A3K85_1_1103_26385_11447"); + read1322.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(24); scores.push_back(12); scores.push_back(30); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(29); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1322.setScores(scores); + rfastqReads.push_back(read1322); + FastqRead read1323; read1323.setName("M00967_44_000000000-A3K85_1_1103_5679_11462"); + read1323.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(25); read1325.setScores(scores); + rfastqReads.push_back(read1325); + FastqRead read1326; read1326.setName("M00967_44_000000000-A3K85_1_1103_18212_11684"); + read1326.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCCGCACTCTAGCATGGCAGTTTCCAAAGCAGTTCAGGGGTTAAGCCCCTGCCTTTCACTTCAGACTTGCCGCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCACCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(12); read1326.setScores(scores); + rfastqReads.push_back(read1326); + FastqRead read1327; read1327.setName("M00967_44_000000000-A3K85_1_1103_23595_11768"); + read1327.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1327.setScores(scores); + rfastqReads.push_back(read1327); + FastqRead read1328; read1328.setName("M00967_44_000000000-A3K85_1_1103_10123_11799"); + read1328.setSeq("CCTGTTTGATACCCACGCTTTCGAGCATCAGCGTCAGTCGCAGGCCGGTAAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTCGTCCACTCAAGACCGCCAGTTTCAACGGCAATTTTACGGTTGAGCCCCAAACTTTCCCAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCATAAAATCCGGAAAAAGCCCCAATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(15); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); read1328.setScores(scores); + rfastqReads.push_back(read1328); + FastqRead read1329; read1329.setName("M00967_44_000000000-A3K85_1_1103_23308_11803"); + read1329.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(16); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(17); scores.push_back(32); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(31); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(29); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(26); read1329.setScores(scores); + rfastqReads.push_back(read1329); + FastqRead read1330; read1330.setName("M00967_44_000000000-A3K85_1_1103_6203_11808"); + read1330.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); 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scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); read1330.setScores(scores); + rfastqReads.push_back(read1330); + FastqRead read1331; read1331.setName("M00967_44_000000000-A3K85_1_1103_23321_11815"); + read1331.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1331.setScores(scores); + rfastqReads.push_back(read1331); + FastqRead read1332; read1332.setName("M00967_44_000000000-A3K85_1_1103_25414_11829"); + read1332.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1332.setScores(scores); + rfastqReads.push_back(read1332); + FastqRead read1333; read1333.setName("M00967_44_000000000-A3K85_1_1103_14174_11972"); + read1333.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAGCTGCAGTTTTGAGTGCGACTATCGGTTGAGCCGGTAGTTTTGACACCCAACTTGCATCCCCGCCTACGCTCCCTTTACACCAAGTAATTCCGGACAACGCTTGCTCCCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); read1333.setScores(scores); + rfastqReads.push_back(read1333); + FastqRead read1334; read1334.setName("M00967_44_000000000-A3K85_1_1103_19959_12064"); + read1334.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1334.setScores(scores); + rfastqReads.push_back(read1334); + FastqRead read1335; read1335.setName("M00967_44_000000000-A3K85_1_1103_11216_12085"); + read1335.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1335.setScores(scores); + rfastqReads.push_back(read1335); + FastqRead read1336; read1336.setName("M00967_44_000000000-A3K85_1_1103_5643_12168"); + read1336.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAGAGGTTTGGCCCCCCCAATTTTCCGCTTACTTAACTGGCCGCCTCCGCCCCCCTTCAAACCAATAAATCACGATCACCCCCCCACCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(36); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(32); 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scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1338.setScores(scores); + rfastqReads.push_back(read1338); + FastqRead read1339; read1339.setName("M00967_44_000000000-A3K85_1_1103_28148_12280"); + read1339.setSeq("CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGCATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCCGACTTGCATCACCGTCTCCGCCCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1339.setScores(scores); + rfastqReads.push_back(read1339); + FastqRead read1340; read1340.setName("M00967_44_000000000-A3K85_1_1103_17326_12344"); + read1340.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTTATCTTCCGCCCTCGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCCCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(26); read1340.setScores(scores); + rfastqReads.push_back(read1340); + FastqRead read1341; read1341.setName("M00967_44_000000000-A3K85_1_1103_4277_12406"); + read1341.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAAGGGTTGAGCCCCCCCGTTTGACCCCTGACTACAAGAACCGCCTCCGCACCCTTTCAAACCCATAAATCCGGATAACGCCCGACATCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); read1341.setScores(scores); + rfastqReads.push_back(read1341); + FastqRead read1342; read1342.setName("M00967_44_000000000-A3K85_1_1103_27645_12485"); + read1342.setSeq("CCTGTTTGATACCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGCACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(24); read1342.setScores(scores); + rfastqReads.push_back(read1342); + FastqRead read1343; read1343.setName("M00967_44_000000000-A3K85_1_1103_18470_12627"); + read1343.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1343.setScores(scores); + rfastqReads.push_back(read1343); + FastqRead read1344; read1344.setName("M00967_44_000000000-A3K85_1_1103_18626_12681"); + read1344.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); read1344.setScores(scores); + rfastqReads.push_back(read1344); + FastqRead read1345; read1345.setName("M00967_44_000000000-A3K85_1_1103_3599_12709"); + read1345.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCTAAAAGGTTGAGCCCCCCAATTTTACCGCTTACTTGATCTTCCGCCTGCGCCCCCCTTAAACCCAATAAAACCGGAAAAAGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(32); scores.push_back(15); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); read1345.setScores(scores); + rfastqReads.push_back(read1345); + FastqRead read1346; read1346.setName("M00967_44_000000000-A3K85_1_1103_13249_12790"); + read1346.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); read1346.setScores(scores); + rfastqReads.push_back(read1346); + FastqRead read1347; read1347.setName("M00967_44_000000000-A3K85_1_1103_10030_12796"); + read1347.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1347.setScores(scores); + rfastqReads.push_back(read1347); + FastqRead read1348; read1348.setName("M00967_44_000000000-A3K85_1_1103_13899_12833"); + read1348.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCATGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); 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scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); read1348.setScores(scores); + rfastqReads.push_back(read1348); + FastqRead read1349; read1349.setName("M00967_44_000000000-A3K85_1_1103_19343_12844"); + read1349.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGCGGGCCCCCGAATTTTACCGCTGACTTGGCATCCCGCCTGCGCCCCCCTTAAACCCAATAAAACCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); read1349.setScores(scores); + rfastqReads.push_back(read1349); + FastqRead read1350; read1350.setName("M00967_44_000000000-A3K85_1_1103_22153_12850"); + read1350.setSeq("CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGACTTAACAAACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1350.setScores(scores); + rfastqReads.push_back(read1350); + FastqRead read1351; read1351.setName("M00967_44_000000000-A3K85_1_1103_22165_12865"); + read1351.setSeq("CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTCCTCCAGCTCTCTCCGCATTTCACCGCTCCACCCGGAATTCTACCCCCCTCTACGAGACTCCAGCTTCCCAGCATCAGATGCAGTTCCCCGCTCCAGCCCGGGGATTTCACACCTCACTTAACAAACCCCCTGCGTGCGCTTCACGCTCAGTAGTTCCGATTCACTCATGCTCCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); 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scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1351.setScores(scores); + rfastqReads.push_back(read1351); + FastqRead read1352; read1352.setName("M00967_44_000000000-A3K85_1_1103_8493_12897"); + read1352.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(39); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); read1353.setScores(scores); + rfastqReads.push_back(read1353); + FastqRead read1354; read1354.setName("M00967_44_000000000-A3K85_1_1103_8277_12999"); + read1354.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1354.setScores(scores); + rfastqReads.push_back(read1354); + FastqRead read1355; read1355.setName("M00967_44_000000000-A3K85_1_1103_17589_13038"); + read1355.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1355.setScores(scores); + rfastqReads.push_back(read1355); + FastqRead read1356; read1356.setName("M00967_44_000000000-A3K85_1_1103_21424_13041"); + read1356.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1356.setScores(scores); + rfastqReads.push_back(read1356); + FastqRead read1357; read1357.setName("M00967_44_000000000-A3K85_1_1103_29129_13051"); + read1357.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); read1357.setScores(scores); + rfastqReads.push_back(read1357); + FastqRead read1358; read1358.setName("M00967_44_000000000-A3K85_1_1103_15983_13062"); + read1358.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATTTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGATGAACAGTTTCGATCGCAGCTATGGGTTAAGCCCATAGATTTCACAGTCGACTTGCTCTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGCCACCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1358.setScores(scores); + rfastqReads.push_back(read1358); + FastqRead read1359; read1359.setName("M00967_44_000000000-A3K85_1_1103_9628_13096"); + read1359.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAAAACAGTTTCAAATGCAATTTGGAGGTTGAGCCTCCAGATTTCACATCTGACTTGCCTTCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1359.setScores(scores); + rfastqReads.push_back(read1359); + FastqRead read1360; read1360.setName("M00967_44_000000000-A3K85_1_1103_23007_13111"); + read1360.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTACGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(13); read1360.setScores(scores); + rfastqReads.push_back(read1360); + FastqRead read1361; read1361.setName("M00967_44_000000000-A3K85_1_1103_21168_13132"); + read1361.setSeq("CCTGTTTGCTCCCCTAGCTTTCGCGCCTCAGCGTCAGTTGCGGCCCAGAGATCTGCCTTCGCCATCGGTGTTCTTCCCGATATCTGCGCATTCCACCGCTACACCGGGAATTCCGATCTCCCCTACCGAACTCGAGACACGCCAGTTCGGGACCCGGCTCAAGGTTGAGCCCTGAGATTAGAGGTCCCGCTTAACGGTCCGCCTGCGCGCGCTTTACGCCCAATGAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(13); read1361.setScores(scores); + rfastqReads.push_back(read1361); + FastqRead read1362; read1362.setName("M00967_44_000000000-A3K85_1_1103_12621_13155"); + read1362.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1362.setScores(scores); + rfastqReads.push_back(read1362); + FastqRead read1363; read1363.setName("M00967_44_000000000-A3K85_1_1103_12671_13193"); + read1363.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCATCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); 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scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1363.setScores(scores); + rfastqReads.push_back(read1363); + FastqRead read1364; read1364.setName("M00967_44_000000000-A3K85_1_1103_27001_13203"); + read1364.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(38); scores.push_back(36); scores.push_back(34); 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scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(29); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(12); read1364.setScores(scores); + rfastqReads.push_back(read1364); + FastqRead read1365; read1365.setName("M00967_44_000000000-A3K85_1_1103_21002_13218"); + read1365.setSeq("CCTGTTCGATACCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); read1365.setScores(scores); + rfastqReads.push_back(read1365); + FastqRead read1366; read1366.setName("M00967_44_000000000-A3K85_1_1103_12418_13286"); + read1366.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(28); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1366.setScores(scores); + rfastqReads.push_back(read1366); + FastqRead read1367; read1367.setName("M00967_44_000000000-A3K85_1_1103_20111_13325"); + read1367.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGCCAGGGGTGGGGCCCCTAACTTTAACTCCGGACTGGCCTTCCCGCCGCGGCCCCCTTTAACCCCATTAAATCCGGTAAACGCCCGCTCCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(27); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1367.setScores(scores); + rfastqReads.push_back(read1367); + FastqRead read1368; read1368.setName("M00967_44_000000000-A3K85_1_1103_18931_13356"); + read1368.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGTTGAGCCCCCCAATTTTACCCCTGACTTAACAACCCGCCGCCGCACCCTTTAAACCCAATAAAACCGGAAAACGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1368.setScores(scores); + rfastqReads.push_back(read1368); + FastqRead read1369; read1369.setName("M00967_44_000000000-A3K85_1_1103_20955_13357"); + read1369.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1369.setScores(scores); + rfastqReads.push_back(read1369); + FastqRead read1370; read1370.setName("M00967_44_000000000-A3K85_1_1103_15513_13364"); + read1370.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGGAAGGGTTGGGCCCCCCAAATTGTCCCCTGACTTAACGATCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCCCCCCTCTCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1370.setScores(scores); + rfastqReads.push_back(read1370); + FastqRead read1371; read1371.setName("M00967_44_000000000-A3K85_1_1103_5691_13436"); + read1371.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1371.setScores(scores); + rfastqReads.push_back(read1371); + FastqRead read1372; read1372.setName("M00967_44_000000000-A3K85_1_1103_13224_13547"); + read1372.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGGTGGGCCCCCCAATTTGACCCCTGACTTAACGATCCGCCCACGCCCCCCTTTAAACCCAAAAATCCCGCTAACACCCCCCTCCCCCCA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); read1372.setScores(scores); + rfastqReads.push_back(read1372); + FastqRead read1373; read1373.setName("M00967_44_000000000-A3K85_1_1103_23466_13547"); + read1373.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(24); scores.push_back(28); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1373.setScores(scores); + rfastqReads.push_back(read1373); + FastqRead read1374; read1374.setName("M00967_44_000000000-A3K85_1_1103_14037_13671"); + read1374.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTACTTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1374.setScores(scores); + rfastqReads.push_back(read1374); + FastqRead read1375; read1375.setName("M00967_44_000000000-A3K85_1_1103_4084_13679"); + read1375.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCTTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCAAGCCCTACAGTTTCAAAAGCAGTTCACGGGTTAAGCCCATGGATTTCACTTCTGACTTGCAAGGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(13); read1375.setScores(scores); + rfastqReads.push_back(read1375); + FastqRead read1376; read1376.setName("M00967_44_000000000-A3K85_1_1103_13846_13704"); + read1376.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1376.setScores(scores); + rfastqReads.push_back(read1376); + FastqRead read1377; read1377.setName("M00967_44_000000000-A3K85_1_1103_19629_13785"); + read1377.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTGTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTAGGGGGGGAGCCCCCCAATTTGCCCGCCGACTCTGCCTCCCCCCCGCGGCCCCCCTTAACCCCCACAAAACCGGTAAACCCCCCCTCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); 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scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1377.setScores(scores); + rfastqReads.push_back(read1377); + FastqRead read1378; read1378.setName("M00967_44_000000000-A3K85_1_1103_4118_13794"); + read1378.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCACTTCAGACTTGCTTAGCCGTCTACGCTTCCTTTACACCACGTAAATCCGGATACCGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(24); read1379.setScores(scores); + rfastqReads.push_back(read1379); + FastqRead read1380; read1380.setName("M00967_44_000000000-A3K85_1_1103_25822_13839"); + read1380.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGCAACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1380.setScores(scores); + rfastqReads.push_back(read1380); + FastqRead read1381; read1381.setName("M00967_44_000000000-A3K85_1_1103_16752_13880"); + read1381.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1381.setScores(scores); + rfastqReads.push_back(read1381); + FastqRead read1382; read1382.setName("M00967_44_000000000-A3K85_1_1103_9333_13891"); + read1382.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGACATTTTACCGCTGACTTAACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1382.setScores(scores); + rfastqReads.push_back(read1382); + FastqRead read1383; read1383.setName("M00967_44_000000000-A3K85_1_1103_25479_13909"); + read1383.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1383.setScores(scores); + rfastqReads.push_back(read1383); + FastqRead read1384; read1384.setName("M00967_44_000000000-A3K85_1_1103_18882_13930"); + read1384.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGCGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAATTACGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(26); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(30); read1384.setScores(scores); + rfastqReads.push_back(read1384); + FastqRead read1385; read1385.setName("M00967_44_000000000-A3K85_1_1103_12963_13947"); + read1385.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCCCTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACCCCCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1385.setScores(scores); + rfastqReads.push_back(read1385); + FastqRead read1386; read1386.setName("M00967_44_000000000-A3K85_1_1103_10852_13956"); + read1386.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCACTTGCCTCTCCGACACTCTAGATATACAGTTTCCAATGCAGTTCCGGGGTTGGGCCCCGGATTTTCACATCAGACTTGCAAGTCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1386.setScores(scores); + rfastqReads.push_back(read1386); + FastqRead read1387; read1387.setName("M00967_44_000000000-A3K85_1_1103_28014_13977"); + read1387.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1387.setScores(scores); + rfastqReads.push_back(read1387); + FastqRead read1388; read1388.setName("M00967_44_000000000-A3K85_1_1103_11398_14041"); + read1388.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(28); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1388.setScores(scores); + rfastqReads.push_back(read1388); + FastqRead read1389; read1389.setName("M00967_44_000000000-A3K85_1_1103_15344_14061"); + read1389.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGCTTTTACCGCTGACTTGGCATCCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGATAACGCCCGCCTCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); read1389.setScores(scores); + rfastqReads.push_back(read1389); + FastqRead read1390; read1390.setName("M00967_44_000000000-A3K85_1_1103_14891_14067"); + read1390.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCCGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(25); scores.push_back(28); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1390.setScores(scores); + rfastqReads.push_back(read1390); + FastqRead read1391; read1391.setName("M00967_44_000000000-A3K85_1_1103_18499_14078"); + read1391.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); read1392.setScores(scores); + rfastqReads.push_back(read1392); + FastqRead read1393; read1393.setName("M00967_44_000000000-A3K85_1_1103_21291_14099"); + read1393.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1393.setScores(scores); + rfastqReads.push_back(read1393); + FastqRead read1394; read1394.setName("M00967_44_000000000-A3K85_1_1103_26200_14110"); + read1394.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGCCTTAACAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); 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scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1394.setScores(scores); + rfastqReads.push_back(read1394); + FastqRead read1395; read1395.setName("M00967_44_000000000-A3K85_1_1103_6420_14143"); + read1395.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1395.setScores(scores); + rfastqReads.push_back(read1395); + FastqRead read1396; read1396.setName("M00967_44_000000000-A3K85_1_1103_18025_14186"); + read1396.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); read1396.setScores(scores); + rfastqReads.push_back(read1396); + FastqRead read1397; read1397.setName("M00967_44_000000000-A3K85_1_1103_10852_14188"); + read1397.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCCACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); 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scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(24); read1397.setScores(scores); + rfastqReads.push_back(read1397); + FastqRead read1398; read1398.setName("M00967_44_000000000-A3K85_1_1103_25086_14222"); + read1398.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1398.setScores(scores); + rfastqReads.push_back(read1398); + FastqRead read1399; read1399.setName("M00967_44_000000000-A3K85_1_1103_3153_14243"); + read1399.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(19); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(31); scores.push_back(30); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1399.setScores(scores); + rfastqReads.push_back(read1399); + FastqRead read1400; read1400.setName("M00967_44_000000000-A3K85_1_1103_10267_14278"); + read1400.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCAAGCCCTACAGTTTCAAAAGCAGTTCACGGGTTAAGCCCATGGATTTCACTTCTGACTTGCAAGGCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1400.setScores(scores); + rfastqReads.push_back(read1400); + FastqRead read1401; read1401.setName("M00967_44_000000000-A3K85_1_1103_14005_14307"); + read1401.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCCGGGTTGGGCCCCCCAATTTGACCGCTGACTCGGCATCCCGCCTGCGCACCCCTTTACACCAAAAAAACCGGAGAACACCCCCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); 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scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1402.setScores(scores); + rfastqReads.push_back(read1402); + FastqRead read1403; read1403.setName("M00967_44_000000000-A3K85_1_1103_5100_14523"); + read1403.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); read1403.setScores(scores); + rfastqReads.push_back(read1403); + FastqRead read1404; read1404.setName("M00967_44_000000000-A3K85_1_1103_21900_14531"); + read1404.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1405.setName("M00967_44_000000000-A3K85_1_1103_25997_14542"); + read1405.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1405.setScores(scores); + rfastqReads.push_back(read1405); + FastqRead read1406; read1406.setName("M00967_44_000000000-A3K85_1_1103_9097_14585"); + read1406.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1406.setScores(scores); + rfastqReads.push_back(read1406); + FastqRead read1407; read1407.setName("M00967_44_000000000-A3K85_1_1103_27889_14599"); + read1407.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCTTAGAGGTTGAGCCTCTCAATTTTACCTCCGGCTTTATCTTCCCCCCTCGCACCCTTTTAAACCAATAAAATCCGGTAACGCCCTCACCCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1407.setScores(scores); + rfastqReads.push_back(read1407); + FastqRead read1408; read1408.setName("M00967_44_000000000-A3K85_1_1103_9210_14632"); + read1408.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1408.setScores(scores); + rfastqReads.push_back(read1408); + FastqRead read1409; read1409.setName("M00967_44_000000000-A3K85_1_1103_23194_14675"); + read1409.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(13); read1409.setScores(scores); + rfastqReads.push_back(read1409); + FastqRead read1410; read1410.setName("M00967_44_000000000-A3K85_1_1103_4510_14714"); + read1410.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCCGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(29); scores.push_back(29); scores.push_back(35); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1410.setScores(scores); + rfastqReads.push_back(read1410); + FastqRead read1411; read1411.setName("M00967_44_000000000-A3K85_1_1103_20807_14776"); + read1411.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(15); 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scores.push_back(31); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); read1411.setScores(scores); + rfastqReads.push_back(read1411); + FastqRead read1412; read1412.setName("M00967_44_000000000-A3K85_1_1103_8080_14833"); + read1412.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAGAGGGTGAGGCCCCCAAATTTTACCCTTACATAACTGTCTCCCTACGCACCCCTTTAACCCAATAAATCCAGATCACCACCGCCTCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); read1412.setScores(scores); + rfastqReads.push_back(read1412); + FastqRead read1413; read1413.setName("M00967_44_000000000-A3K85_1_1103_2755_14834"); + read1413.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCACTAAATCCGGCTAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(18); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1413.setScores(scores); + rfastqReads.push_back(read1413); + FastqRead read1414; read1414.setName("M00967_44_000000000-A3K85_1_1103_24658_14877"); + read1414.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1414.setScores(scores); + rfastqReads.push_back(read1414); + FastqRead read1415; read1415.setName("M00967_44_000000000-A3K85_1_1103_9502_14985"); + read1415.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCCTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1415.setScores(scores); + rfastqReads.push_back(read1415); + FastqRead read1416; read1416.setName("M00967_44_000000000-A3K85_1_1103_26404_15045"); + read1416.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCGACACTAGGAATTCCGCCTACCTCTACTTCACTCAAGACAAGAAGTTTTCAACGCAGCTACCAGTTAGGCCGCCAGACTTACAATTCAACTTTCTCGCCCCCCCACGCCCCCTTTACACCCAGTACATCCGGATAACACTTCCCCCCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1416.setScores(scores); + rfastqReads.push_back(read1416); + FastqRead read1417; read1417.setName("M00967_44_000000000-A3K85_1_1103_29713_15047"); + read1417.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACCCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1417.setScores(scores); + rfastqReads.push_back(read1417); + FastqRead read1418; read1418.setName("M00967_44_000000000-A3K85_1_1103_13164_15106"); + read1418.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1418.setScores(scores); + rfastqReads.push_back(read1418); + FastqRead read1419; read1419.setName("M00967_44_000000000-A3K85_1_1103_16186_15152"); + read1419.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1419.setScores(scores); + rfastqReads.push_back(read1419); + FastqRead read1420; read1420.setName("M00967_44_000000000-A3K85_1_1103_3458_15207"); + read1420.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGACCGGGTTGGCCCGGGAATTTTTCCCCTCAGCTGACAAAACCCCCACCGCCCCCTCTAACACACACAAACAACGCAAACAACCCACCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(20); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); read1420.setScores(scores); + rfastqReads.push_back(read1420); + FastqRead read1421; read1421.setName("M00967_44_000000000-A3K85_1_1103_3440_15209"); + read1421.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGGTGGGGCCCGGAATTTTTTCGCCTGCTTGTCAAACACCCCACGACCCCCCTTAACCCAAAAAAAAAGGATAAGACACGCCACCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); read1421.setScores(scores); + rfastqReads.push_back(read1421); + FastqRead read1422; read1422.setName("M00967_44_000000000-A3K85_1_1103_5085_15245"); + read1422.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); read1422.setScores(scores); + rfastqReads.push_back(read1422); + FastqRead read1423; read1423.setName("M00967_44_000000000-A3K85_1_1103_13550_15273"); + read1423.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1423.setScores(scores); + rfastqReads.push_back(read1423); + FastqRead read1424; read1424.setName("M00967_44_000000000-A3K85_1_1103_24680_15378"); + read1424.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); read1424.setScores(scores); + rfastqReads.push_back(read1424); + FastqRead read1425; read1425.setName("M00967_44_000000000-A3K85_1_1103_5465_15412"); + read1425.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1425.setScores(scores); + rfastqReads.push_back(read1425); + FastqRead read1426; read1426.setName("M00967_44_000000000-A3K85_1_1103_10672_15541"); + read1426.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1426.setScores(scores); + rfastqReads.push_back(read1426); + FastqRead read1427; read1427.setName("M00967_44_000000000-A3K85_1_1103_20468_15561"); + read1427.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(24); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1427.setScores(scores); + rfastqReads.push_back(read1427); + FastqRead read1428; read1428.setName("M00967_44_000000000-A3K85_1_1103_28043_15697"); + read1428.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1428.setScores(scores); + rfastqReads.push_back(read1428); + FastqRead read1429; read1429.setName("M00967_44_000000000-A3K85_1_1103_14447_15725"); + read1429.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1429.setScores(scores); + rfastqReads.push_back(read1429); + FastqRead read1430; read1430.setName("M00967_44_000000000-A3K85_1_1103_17439_15731"); + read1430.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1430.setScores(scores); + rfastqReads.push_back(read1430); + FastqRead read1431; read1431.setName("M00967_44_000000000-A3K85_1_1103_24659_15735"); + read1431.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCCAGCTACACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1431.setScores(scores); + rfastqReads.push_back(read1431); + FastqRead read1432; read1432.setName("M00967_44_000000000-A3K85_1_1103_7472_15735"); + read1432.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1432.setScores(scores); + rfastqReads.push_back(read1432); + FastqRead read1433; read1433.setName("M00967_44_000000000-A3K85_1_1103_12919_15788"); + read1433.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAAGGGTTGGGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAAACCGGGTAACGATCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1433.setScores(scores); + rfastqReads.push_back(read1433); + FastqRead read1434; read1434.setName("M00967_44_000000000-A3K85_1_1103_16902_15833"); + read1434.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read1434.setScores(scores); + rfastqReads.push_back(read1434); + FastqRead read1435; read1435.setName("M00967_44_000000000-A3K85_1_1103_10202_15911"); + read1435.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGTTTGAGCCCCGCAATTTTACCGCTGACTTGGCCGGCCGCCTAAGAACCCTTTCACCCCCATCAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(30); scores.push_back(27); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); read1435.setScores(scores); + rfastqReads.push_back(read1435); + FastqRead read1436; read1436.setName("M00967_44_000000000-A3K85_1_1103_14008_15997"); + read1436.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTTAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(12); read1436.setScores(scores); + rfastqReads.push_back(read1436); + FastqRead read1437; read1437.setName("M00967_44_000000000-A3K85_1_1103_15658_16063"); + read1437.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); read1437.setScores(scores); + rfastqReads.push_back(read1437); + FastqRead read1438; read1438.setName("M00967_44_000000000-A3K85_1_1103_6338_16092"); + read1438.setSeq("CCTGTTTGATCCCCACACTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTTGGCCGCCTTCGCCACCGGTGTTCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCGCCAACCTCTACTTCACTCAAGAAAGCCAGTTTCAACTGCAGTCTACAGGTTAAGCCCGTAGTTTTCACAGCTGACTTGGCTTCCCGCCTACGCTCCCTTTACACCCAGTACTTCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); read1438.setScores(scores); + rfastqReads.push_back(read1438); + FastqRead read1439; read1439.setName("M00967_44_000000000-A3K85_1_1103_13096_16098"); + read1439.setSeq("CCTGTTCGCTCCCCACGCTTTCGTGCCTCAGCGTCAGTTTCAGTCCAGAAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTTCCTCTCCTGTACTCCAGCTTGATAGTTCCAAATGCAATCCTCGGGTTAAGCCCAAGGCTTTCACATCTGGCTTACCATGCCGCCTACTCACCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1439.setScores(scores); + rfastqReads.push_back(read1439); + FastqRead read1440; read1440.setName("M00967_44_000000000-A3K85_1_1103_19906_16099"); + read1440.setSeq("CCTGTTTGCTCCCCATGCTTTCGTGCATCAGCGTCAGTTAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAAACACAGTTTCAAGCGCAGCCCCGGAGTTGAGCCCCGGTATTTCACGCCTGACTTGCGTTCCCGCCTACGCACCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); read1440.setScores(scores); + rfastqReads.push_back(read1440); + FastqRead read1441; read1441.setName("M00967_44_000000000-A3K85_1_1103_16176_16125"); + read1441.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); read1441.setScores(scores); + rfastqReads.push_back(read1441); + FastqRead read1442; read1442.setName("M00967_44_000000000-A3K85_1_1103_14624_16174"); + read1442.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCTACAGCGTTGAGCACCGCTTTTTTACCACTGACTTTGCATCATGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(35); scores.push_back(15); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); read1442.setScores(scores); + rfastqReads.push_back(read1442); + FastqRead read1443; read1443.setName("M00967_44_000000000-A3K85_1_1103_15776_16234"); + read1443.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1444.setScores(scores); + rfastqReads.push_back(read1444); + FastqRead read1445; read1445.setName("M00967_44_000000000-A3K85_1_1103_7437_16302"); + read1445.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACATGATCTTCCGCCTGGGGACCCTTTAAACCCAATAAAACCGGGTAACGCTACAAATCTCCCG"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); read1445.setScores(scores); + rfastqReads.push_back(read1445); + FastqRead read1446; read1446.setName("M00967_44_000000000-A3K85_1_1103_4359_16337"); + read1446.setSeq("CCTGTTTGATCCCCACACTTTCGCGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCCAAATTTCACAACTGACTTGACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTAGCCTCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(26); read1446.setScores(scores); + rfastqReads.push_back(read1446); + FastqRead read1447; read1447.setName("M00967_44_000000000-A3K85_1_1103_22494_16376"); + read1447.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGCCCCCAAATTTACCCCCGTACTATGCCTCCCGCCTGCGGCACCTTTAAACCACAACAAAACGGAAAACGCCCCCCTTCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); read1447.setScores(scores); + rfastqReads.push_back(read1447); + FastqRead read1448; read1448.setName("M00967_44_000000000-A3K85_1_1103_16889_16426"); + read1448.setSeq("CCTGTTTGATCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1448.setScores(scores); + rfastqReads.push_back(read1448); + FastqRead read1449; read1449.setName("M00967_44_000000000-A3K85_1_1103_21982_16444"); + read1449.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCCAGCCTGCCAGTTTCCAATGCAGCCCCGGGGTTGAGCCCCGGTATTTCACATCAGACTTGGCAGGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCTCCATACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(13); read1449.setScores(scores); + rfastqReads.push_back(read1449); + FastqRead read1450; read1450.setName("M00967_44_000000000-A3K85_1_1103_10570_16480"); + read1450.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(13); read1450.setScores(scores); + rfastqReads.push_back(read1450); + FastqRead read1451; read1451.setName("M00967_44_000000000-A3K85_1_1103_18948_16551"); + read1451.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(28); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1451.setScores(scores); + rfastqReads.push_back(read1451); + FastqRead read1452; read1452.setName("M00967_44_000000000-A3K85_1_1103_14363_16559"); + read1452.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1452.setScores(scores); + rfastqReads.push_back(read1452); + FastqRead read1453; read1453.setName("M00967_44_000000000-A3K85_1_1103_28317_16587"); + read1453.setSeq("CCCGTTTGCTCCCTACGCTTTCGTGCCTTAGTGTCAGAACCGTCCCAGTAACCTGCCTACGCTATCGGTGTTCCTTCTAATATCTACGGATTTCACTCCTACACTAGAAATTCCAGTTACCCCTAACGGTCTCGAGCTTAGCAGTTTAGCTAATAGTCTGAATGGTTGAGCCACCAGATTTCACTAGCTACTTACTATGCCACCTACGCAACTCTTTACACCCAGTCACTCCGGATAATGCTCGGATCCTA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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+ FastqRead read1454; read1454.setName("M00967_44_000000000-A3K85_1_1103_24651_16640"); + read1454.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAACTCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(32); read1454.setScores(scores); + rfastqReads.push_back(read1454); + FastqRead read1455; read1455.setName("M00967_44_000000000-A3K85_1_1103_11996_16826"); + read1455.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGCAACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCATCGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1455.setScores(scores); + rfastqReads.push_back(read1455); + FastqRead read1456; read1456.setName("M00967_44_000000000-A3K85_1_1103_12207_16849"); + read1456.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); 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scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(29); scores.push_back(37); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1458.setScores(scores); + rfastqReads.push_back(read1458); + FastqRead read1459; read1459.setName("M00967_44_000000000-A3K85_1_1103_5954_17004"); + read1459.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); 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scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1459.setScores(scores); + rfastqReads.push_back(read1459); + FastqRead read1460; read1460.setName("M00967_44_000000000-A3K85_1_1103_5941_17020"); + read1460.setSeq("CCTGTTTGATCCCCACGCTTTCGTGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGCATTCCGATGACTTCTCCCCCACTCAAGGGACACAGTTTCAAATGCAGTTCACGGGTTGACCCCGTGGATTTCCCATCTGCCTTGTATCTCCCGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(17); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(37); 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scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(12); read1460.setScores(scores); + rfastqReads.push_back(read1460); + FastqRead read1461; read1461.setName("M00967_44_000000000-A3K85_1_1103_17338_17042"); + read1461.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1461.setScores(scores); + rfastqReads.push_back(read1461); + FastqRead read1462; read1462.setName("M00967_44_000000000-A3K85_1_1103_24486_17054"); + read1462.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTAACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACCCTCAGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(20); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); read1462.setScores(scores); + rfastqReads.push_back(read1462); + FastqRead read1463; read1463.setName("M00967_44_000000000-A3K85_1_1103_28355_17076"); + read1463.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1463.setScores(scores); + rfastqReads.push_back(read1463); + FastqRead read1464; read1464.setName("M00967_44_000000000-A3K85_1_1103_9052_17102"); + read1464.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAACCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCACGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); 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scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(27); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(29); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(29); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); read1464.setScores(scores); + rfastqReads.push_back(read1464); + FastqRead read1465; read1465.setName("M00967_44_000000000-A3K85_1_1103_3555_17196"); + read1465.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1465.setScores(scores); + rfastqReads.push_back(read1465); + FastqRead read1466; read1466.setName("M00967_44_000000000-A3K85_1_1103_21030_17291"); + read1466.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); read1466.setScores(scores); + rfastqReads.push_back(read1466); + FastqRead read1467; read1467.setName("M00967_44_000000000-A3K85_1_1103_28056_17323"); + read1467.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); read1467.setScores(scores); + rfastqReads.push_back(read1467); + FastqRead read1468; read1468.setName("M00967_44_000000000-A3K85_1_1103_24986_17366"); + read1468.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCCACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(24); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(12); read1468.setScores(scores); + rfastqReads.push_back(read1468); + FastqRead read1469; read1469.setName("M00967_44_000000000-A3K85_1_1103_8292_17380"); + read1469.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(30); read1470.setScores(scores); + rfastqReads.push_back(read1470); + FastqRead read1471; read1471.setName("M00967_44_000000000-A3K85_1_1103_25354_17418"); + read1471.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(35); scores.push_back(28); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1471.setScores(scores); + rfastqReads.push_back(read1471); + FastqRead read1472; read1472.setName("M00967_44_000000000-A3K85_1_1103_22657_17476"); + read1472.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1472.setScores(scores); + rfastqReads.push_back(read1472); + FastqRead read1473; read1473.setName("M00967_44_000000000-A3K85_1_1103_14323_17529"); + read1473.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGGGGCTCCCAATTTTTACCCCTACCTTACCGGTCGCCCCCGCCCCCCTTCAAACCCATAAAAACCGATAACGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); read1473.setScores(scores); + rfastqReads.push_back(read1473); + FastqRead read1474; read1474.setName("M00967_44_000000000-A3K85_1_1103_3837_17534"); + read1474.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCCCTTCAGACTTGCAGAACCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCCGCCCCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(31); scores.push_back(35); scores.push_back(19); scores.push_back(33); scores.push_back(19); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(18); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(29); scores.push_back(18); scores.push_back(30); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(18); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(38); scores.push_back(17); scores.push_back(18); scores.push_back(17); scores.push_back(17); scores.push_back(34); scores.push_back(33); scores.push_back(18); scores.push_back(33); scores.push_back(17); scores.push_back(31); scores.push_back(15); scores.push_back(31); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(34); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(28); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1474.setScores(scores); + rfastqReads.push_back(read1474); + FastqRead read1475; read1475.setName("M00967_44_000000000-A3K85_1_1103_25070_17572"); + read1475.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAAATTTACCGCTGACTTGTTCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1475.setScores(scores); + rfastqReads.push_back(read1475); + FastqRead read1476; read1476.setName("M00967_44_000000000-A3K85_1_1103_18018_17587"); + read1476.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGACCGGGTTGGGCCCCGCAATTTTTCCGCTGACTTTACAAACCGCCCACGCCCCCCTTAAACCCACAAAATACGGATCACGCCCCCACCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(12); read1476.setScores(scores); + rfastqReads.push_back(read1476); + FastqRead read1477; read1477.setName("M00967_44_000000000-A3K85_1_1103_25269_17592"); + read1477.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1477.setScores(scores); + rfastqReads.push_back(read1477); + FastqRead read1478; read1478.setName("M00967_44_000000000-A3K85_1_1103_13961_17626"); + read1478.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); read1478.setScores(scores); + rfastqReads.push_back(read1478); + FastqRead read1479; read1479.setName("M00967_44_000000000-A3K85_1_1103_25526_17629"); + read1479.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); read1479.setScores(scores); + rfastqReads.push_back(read1479); + FastqRead read1480; read1480.setName("M00967_44_000000000-A3K85_1_1103_17555_17634"); + read1480.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(32); read1480.setScores(scores); + rfastqReads.push_back(read1480); + FastqRead read1481; read1481.setName("M00967_44_000000000-A3K85_1_1103_3927_17636"); + read1481.setSeq("CCTGTTTGATACCCACACTTTCGTGCATGAGCGTCAGTTGCGCTCCGGTATGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGTAGGGGGTTGAGCCATCAACTTTACCTCTGGCCTTGTCTTCCCCCCGAGCACCCCTTTAAACCAAGTAAATCCGGATAACGCCGCCCCCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(15); 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scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1481.setScores(scores); + rfastqReads.push_back(read1481); + FastqRead read1482; read1482.setName("M00967_44_000000000-A3K85_1_1103_9748_17663"); + read1482.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGAAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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+ scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1483.setScores(scores); + rfastqReads.push_back(read1483); + FastqRead read1484; read1484.setName("M00967_44_000000000-A3K85_1_1103_15720_17744"); + read1484.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1484.setScores(scores); + rfastqReads.push_back(read1484); + FastqRead read1485; read1485.setName("M00967_44_000000000-A3K85_1_1103_7188_17759"); + read1485.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCTATACAGTTTCCAAAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTTCAGACTTGCATCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1486.setScores(scores); + rfastqReads.push_back(read1486); + FastqRead read1487; read1487.setName("M00967_44_000000000-A3K85_1_1103_8798_17809"); + read1487.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1487.setScores(scores); + rfastqReads.push_back(read1487); + FastqRead read1488; read1488.setName("M00967_44_000000000-A3K85_1_1103_19257_17877"); + read1488.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1488.setScores(scores); + rfastqReads.push_back(read1488); + FastqRead read1489; read1489.setName("M00967_44_000000000-A3K85_1_1103_26521_17938"); + read1489.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTTACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1489.setScores(scores); + rfastqReads.push_back(read1489); + FastqRead read1490; read1490.setName("M00967_44_000000000-A3K85_1_1103_5451_17941"); + read1490.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCTCAGTTAACCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACCCCTGCCCCCTACG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(33); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(17); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(16); scores.push_back(37); scores.push_back(29); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(30); scores.push_back(27); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(30); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(28); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(29); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(12); read1490.setScores(scores); + rfastqReads.push_back(read1490); + FastqRead read1491; read1491.setName("M00967_44_000000000-A3K85_1_1103_27385_18070"); + read1491.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGGACGGGGTTGAGCCCCGAAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(24); read1491.setScores(scores); + rfastqReads.push_back(read1491); + FastqRead read1492; read1492.setName("M00967_44_000000000-A3K85_1_1103_26389_18095"); + read1492.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCGGCTAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); 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scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1492.setScores(scores); + rfastqReads.push_back(read1492); + FastqRead read1493; read1493.setName("M00967_44_000000000-A3K85_1_1103_15739_18180"); + read1493.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGCATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCCA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(29); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1493.setScores(scores); + rfastqReads.push_back(read1493); + FastqRead read1494; read1494.setName("M00967_44_000000000-A3K85_1_1103_6171_18249"); + read1494.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(29); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1494.setScores(scores); + rfastqReads.push_back(read1494); + FastqRead read1495; read1495.setName("M00967_44_000000000-A3K85_1_1103_14027_18284"); + read1495.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ FastqRead read1496; read1496.setName("M00967_44_000000000-A3K85_1_1103_4366_18310"); + read1496.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCGCGCAGTTCCAAGAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTCCTGGCTTGCGCTGCCGTCTGCGCCCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1496.setScores(scores); + rfastqReads.push_back(read1496); + FastqRead read1497; read1497.setName("M00967_44_000000000-A3K85_1_1103_3010_18437"); + read1497.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGAAAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(20); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); 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scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1497.setScores(scores); + rfastqReads.push_back(read1497); + FastqRead read1498; read1498.setName("M00967_44_000000000-A3K85_1_1103_26342_18497"); + read1498.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1498.setScores(scores); + rfastqReads.push_back(read1498); + FastqRead read1499; read1499.setName("M00967_44_000000000-A3K85_1_1103_22949_18629"); + read1499.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(28); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1499.setScores(scores); + rfastqReads.push_back(read1499); + FastqRead read1500; read1500.setName("M00967_44_000000000-A3K85_1_1103_28333_18654"); + read1500.setSeq("CCTGTTTGATCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCAACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAACCAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATTTGCCTTGTCTCCCCGGCTGCACGCCCTTTACCCCCAGTAAATCCGGACACCGCTTGCCACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(26); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(29); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1500.setScores(scores); + rfastqReads.push_back(read1500); + FastqRead read1501; read1501.setName("M00967_44_000000000-A3K85_1_1103_21943_18693"); + read1501.setSeq("CCCGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTAAAAGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCCATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1501.setScores(scores); + rfastqReads.push_back(read1501); + FastqRead read1502; read1502.setName("M00967_44_000000000-A3K85_1_1103_12705_18743"); + read1502.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTACTTCACTCAAGAATATCAGTTTTGAACGCTTCTATCGGTTAAGCCGGTAGTTTATACATTCAACTTAATATCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTCGCCACCTACGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1502.setScores(scores); + rfastqReads.push_back(read1502); + FastqRead read1503; read1503.setName("M00967_44_000000000-A3K85_1_1103_19513_18746"); + read1503.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1503.setScores(scores); + rfastqReads.push_back(read1503); + FastqRead read1504; read1504.setName("M00967_44_000000000-A3K85_1_1103_5488_18772"); + read1504.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAACCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCACACTCGAGGCCGCCAGTTTCCACGGCAGGCCCGGGTTTGGCCCCCACATTTGCCCACTGGATTCACCGTCCCCCCTCGCCCCCCTTAAACCCAATAAAACCCGGTAAAGCCCGCCCCCCCCC"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(33); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(14); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(27); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(27); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1504.setScores(scores); + rfastqReads.push_back(read1504); + FastqRead read1505; read1505.setName("M00967_44_000000000-A3K85_1_1103_7716_18803"); + read1505.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1505.setScores(scores); + rfastqReads.push_back(read1505); + FastqRead read1506; read1506.setName("M00967_44_000000000-A3K85_1_1103_5935_18822"); + read1506.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGAGCCCCCCCATTTTACCGCTGCCTTAAAAGACCGCCTACGCACCCCTTCAACACAAAAAAACCGGATAAAGCTCGCAACCCACC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); read1506.setScores(scores); + rfastqReads.push_back(read1506); + FastqRead read1507; read1507.setName("M00967_44_000000000-A3K85_1_1103_23321_18830"); + read1507.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(35); 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scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1507.setScores(scores); + rfastqReads.push_back(read1507); + FastqRead read1508; read1508.setName("M00967_44_000000000-A3K85_1_1103_15273_18842"); + read1508.setSeq("CCTGTTTGCTCCCCACACTTTCGTGCCTCAGCGTCAGTTGCAGTCCAGTTAGCCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTAACCTCTACTGCACTCAAGTCATACAGTTTTAGAAGCAGCACCCGAGTTAAGCCCTGGGTATTTCACTTCTAACTTGTACAACCGCCTACGCACCCTTTACGCCCAGTCATTCCGAACAACGCTTGCTCCCTA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ rfastqReads.push_back(read1508); + FastqRead read1509; read1509.setName("M00967_44_000000000-A3K85_1_1103_17511_18920"); + read1509.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(13); read1509.setScores(scores); + rfastqReads.push_back(read1509); + FastqRead read1510; read1510.setName("M00967_44_000000000-A3K85_1_1103_7018_18928"); + read1510.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1510.setScores(scores); + rfastqReads.push_back(read1510); + FastqRead read1511; read1511.setName("M00967_44_000000000-A3K85_1_1103_27978_18943"); + read1511.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); read1511.setScores(scores); + rfastqReads.push_back(read1511); + FastqRead read1512; read1512.setName("M00967_44_000000000-A3K85_1_1103_9670_19013"); + read1512.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1512.setScores(scores); + rfastqReads.push_back(read1512); + FastqRead read1513; read1513.setName("M00967_44_000000000-A3K85_1_1103_23081_19144"); + read1513.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCAGTTCGGGGGTGAGCCCCCCGATTTTCCCGCTGACTTGGCAGGCCGCCTACGCCCCCCTTTAACCCCATTAATCCCGGTCACGCCCGCATCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1513.setScores(scores); + rfastqReads.push_back(read1513); + FastqRead read1514; read1514.setName("M00967_44_000000000-A3K85_1_1103_24434_19183"); + read1514.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1514.setScores(scores); + rfastqReads.push_back(read1514); + FastqRead read1515; read1515.setName("M00967_44_000000000-A3K85_1_1103_17019_19190"); + read1515.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTCAACCCAATAAATACGGATAACGCTCGCAACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1515.setScores(scores); + rfastqReads.push_back(read1515); + FastqRead read1516; read1516.setName("M00967_44_000000000-A3K85_1_1103_10311_19219"); + read1516.setSeq("CCTGTTTGCTCCCCACGCTTTCGGGCCTCAACGTCAGTCGCAGTCCAGCAGGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGCACTCCAGCCGCGCAGTTCCAAGAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTCCTGGCTTGCGCTGCCGTCTGCGCCCCCTTTACACCCAGTCAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1516.setScores(scores); + rfastqReads.push_back(read1516); + FastqRead read1517; read1517.setName("M00967_44_000000000-A3K85_1_1103_24155_19279"); + read1517.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAAACCAATAAAACCGGATAAAGCCCCCCTCCTCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1517.setScores(scores); + rfastqReads.push_back(read1517); + FastqRead read1518; read1518.setName("M00967_44_000000000-A3K85_1_1103_22758_19302"); + read1518.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCCATAAATCCGGAAAACGCCCGCATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(13); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); read1518.setScores(scores); + rfastqReads.push_back(read1518); + FastqRead read1519; read1519.setName("M00967_44_000000000-A3K85_1_1103_20150_19314"); + read1519.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTCCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(29); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(24); read1519.setScores(scores); + rfastqReads.push_back(read1519); + FastqRead read1520; read1520.setName("M00967_44_000000000-A3K85_1_1103_2960_19448"); + read1520.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTACTTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(31); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(32); read1520.setScores(scores); + rfastqReads.push_back(read1520); + FastqRead read1521; read1521.setName("M00967_44_000000000-A3K85_1_1103_18351_19461"); + read1521.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1521.setScores(scores); + rfastqReads.push_back(read1521); + FastqRead read1522; read1522.setName("M00967_44_000000000-A3K85_1_1103_19714_19498"); + read1522.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCCCCGGTGTTCTTCCTAATATCTACGCATTCCCCCGCTACACTAGGAATTCCACTCACCTCTCCTGAACTCCACCTCCCAAGATTTATATGCACTTCCACGGTTAAGCCGCGGCATTTCACATATAACTTCAAGATCCTCCTTAACTCCCGCTACGCACAATCATTCCAAACAACGCCCACCCACTACA"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(16); 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scores.push_back(28); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(27); scores.push_back(27); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); read1522.setScores(scores); + rfastqReads.push_back(read1522); + FastqRead read1523; read1523.setName("M00967_44_000000000-A3K85_1_1103_9547_19513"); + read1523.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCAGTTCCGCGGTTAAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(34); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1523.setScores(scores); + rfastqReads.push_back(read1523); + FastqRead read1524; read1524.setName("M00967_44_000000000-A3K85_1_1103_22936_19518"); + read1524.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1524.setScores(scores); + rfastqReads.push_back(read1524); + FastqRead read1525; read1525.setName("M00967_44_000000000-A3K85_1_1103_9506_19572"); + read1525.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTCCACAGTTTCCAAAGCAGTCCCAGGGTTGAGCCCTGGGCTTTCACTTCAGACTTGCACAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(26); read1525.setScores(scores); + rfastqReads.push_back(read1525); + FastqRead read1526; read1526.setName("M00967_44_000000000-A3K85_1_1103_6680_19574"); + read1526.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAATCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCATTCTCCTCTCCTGCACTCTAGACTTCCAGTTTGAAATGCAGCACTCAAGTTGAGCCCGAGTATTTCACATCTCACTTAAAAGTCCGCCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTCGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(35); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); read1526.setScores(scores); + rfastqReads.push_back(read1526); + FastqRead read1527; read1527.setName("M00967_44_000000000-A3K85_1_1103_19275_19601"); + read1527.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1527.setScores(scores); + rfastqReads.push_back(read1527); + FastqRead read1528; read1528.setName("M00967_44_000000000-A3K85_1_1103_22951_19624"); + read1528.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCAACCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(13); read1528.setScores(scores); + rfastqReads.push_back(read1528); + FastqRead read1529; read1529.setName("M00967_44_000000000-A3K85_1_1103_8019_19624"); + read1529.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(31); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1529.setScores(scores); + rfastqReads.push_back(read1529); + FastqRead read1530; read1530.setName("M00967_44_000000000-A3K85_1_1103_23352_19628"); + read1530.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCCGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGACCCGGGGTGGGGCCCGCGGTTTTCCCGCTGACTTTGGCGGCCGCCCGCGCACCCCTTTAACCCCATAAATCCGGATAAAGCCCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(29); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(24); read1530.setScores(scores); + rfastqReads.push_back(read1530); + FastqRead read1531; read1531.setName("M00967_44_000000000-A3K85_1_1103_12999_19660"); + read1531.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGGCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1531.setScores(scores); + rfastqReads.push_back(read1531); + FastqRead read1532; read1532.setName("M00967_44_000000000-A3K85_1_1103_3950_19678"); + read1532.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(26); read1532.setScores(scores); + rfastqReads.push_back(read1532); + FastqRead read1533; read1533.setName("M00967_44_000000000-A3K85_1_1103_15632_19680"); + read1533.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(13); read1533.setScores(scores); + rfastqReads.push_back(read1533); + FastqRead read1534; read1534.setName("M00967_44_000000000-A3K85_1_1103_27326_19724"); + read1534.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGGGTTCTTCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCCACCTCTCCTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCCGTACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); 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scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(27); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(35); read1535.setScores(scores); + rfastqReads.push_back(read1535); + FastqRead read1536; read1536.setName("M00967_44_000000000-A3K85_1_1103_19202_19794"); + read1536.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(36); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1536.setScores(scores); + rfastqReads.push_back(read1536); + FastqRead read1537; read1537.setName("M00967_44_000000000-A3K85_1_1103_18682_19804"); + read1537.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGCTCTTCCGCCGTCGCAACCTTTAAACCCAATAAATCCGGGACACTCTCGCATCCCCCGA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(26); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); read1537.setScores(scores); + rfastqReads.push_back(read1537); + FastqRead read1538; read1538.setName("M00967_44_000000000-A3K85_1_1103_14671_19841"); + read1538.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCAACCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(25); scores.push_back(13); scores.push_back(13); read1538.setScores(scores); + rfastqReads.push_back(read1538); + FastqRead read1539; read1539.setName("M00967_44_000000000-A3K85_1_1103_5340_19882"); + read1539.setSeq("CCTGTTTGATCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTCCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTCCCACCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(29); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(16); scores.push_back(20); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(15); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(28); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(26); read1539.setScores(scores); + rfastqReads.push_back(read1539); + FastqRead read1540; read1540.setName("M00967_44_000000000-A3K85_1_1103_11028_19930"); + read1540.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); 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scores.push_back(37); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1540.setScores(scores); + rfastqReads.push_back(read1540); + FastqRead read1541; read1541.setName("M00967_44_000000000-A3K85_1_1103_15653_20046"); + read1541.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1541.setScores(scores); + rfastqReads.push_back(read1541); + FastqRead read1542; read1542.setName("M00967_44_000000000-A3K85_1_1103_14597_20151"); + read1542.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGCGCCCCGAATTTTTCCCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(29); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(29); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1542.setScores(scores); + rfastqReads.push_back(read1542); + FastqRead read1543; read1543.setName("M00967_44_000000000-A3K85_1_1103_10784_20157"); + read1543.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGCAAATCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCATTTGCCCCTCCTGCACTCGAGTCCAACAGTTTTGGTAGTAGTGCCGAGGTTAAGCCTCGGAGTTACGCTACCAACTTGTCAAACCACCTACGCACCCTTTACGCCCAGTCATTCCGGATAACGCTTGCCTCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1543.setScores(scores); + rfastqReads.push_back(read1543); + FastqRead read1544; read1544.setName("M00967_44_000000000-A3K85_1_1103_22277_20204"); + read1544.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(28); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); read1544.setScores(scores); + rfastqReads.push_back(read1544); + FastqRead read1545; read1545.setName("M00967_44_000000000-A3K85_1_1103_4683_20232"); + read1545.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCCGGTGGCGCCCGGGCTTTTTTCCGCGCACTTGACAAAAAGCCAACGCCCCCCTTAAAACCAACAAATACGGCAAAAGACTGCACCCTACC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(20); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); 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scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1545.setScores(scores); + rfastqReads.push_back(read1545); + FastqRead read1546; read1546.setName("M00967_44_000000000-A3K85_1_1103_7541_20239"); + read1546.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1546.setScores(scores); + rfastqReads.push_back(read1546); + FastqRead read1547; read1547.setName("M00967_44_000000000-A3K85_1_1103_18556_20305"); + read1547.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); 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scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); read1548.setScores(scores); + rfastqReads.push_back(read1548); + FastqRead read1549; read1549.setName("M00967_44_000000000-A3K85_1_1103_17409_20416"); + read1549.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1549.setScores(scores); + rfastqReads.push_back(read1549); + FastqRead read1550; read1550.setName("M00967_44_000000000-A3K85_1_1103_17395_20528"); + read1550.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACCCCTGCCCCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1550.setScores(scores); + rfastqReads.push_back(read1550); + FastqRead read1551; read1551.setName("M00967_44_000000000-A3K85_1_1103_10583_20564"); + read1551.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGGCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGGCAATCAGTTTCAACGGCGGGGAAGGGTTGAGCCCCCTCATTTTTCCCCTGCCTTTTAGGGCCGCCTACGCCCCCCTTAAACCCCATAAAAACGGGTAACGCCCCCAGCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(19); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); 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scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1551.setScores(scores); + rfastqReads.push_back(read1551); + FastqRead read1552; read1552.setName("M00967_44_000000000-A3K85_1_1103_28474_20611"); + read1552.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); read1552.setScores(scores); + rfastqReads.push_back(read1552); + FastqRead read1553; read1553.setName("M00967_44_000000000-A3K85_1_1103_4930_20613"); + read1553.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1553.setScores(scores); + rfastqReads.push_back(read1553); + FastqRead read1554; read1554.setName("M00967_44_000000000-A3K85_1_1103_26491_20615"); + read1554.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(28); scores.push_back(36); scores.push_back(13); scores.push_back(13); read1554.setScores(scores); + rfastqReads.push_back(read1554); + FastqRead read1555; read1555.setName("M00967_44_000000000-A3K85_1_1103_20367_20617"); + read1555.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1555.setScores(scores); + rfastqReads.push_back(read1555); + FastqRead read1556; read1556.setName("M00967_44_000000000-A3K85_1_1103_3566_20620"); + read1556.setSeq("CCTGTTTGATACCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCAACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTGCCTCTCCAGCACTCCAGAACCACAGTTTCCAAAGCCCTTCCGCGGTTAAGCCACGGGCTTTCCCTTTAGACTTGCAGAACCGTCTACGATCCCTTTACACCCAGTAAATCCGGATAACGCCCGCACCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(18); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(15); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(29); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(27); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); read1556.setScores(scores); + rfastqReads.push_back(read1556); + FastqRead read1557; read1557.setName("M00967_44_000000000-A3K85_1_1103_11051_20624"); + read1557.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); read1557.setScores(scores); + rfastqReads.push_back(read1557); + FastqRead read1558; read1558.setName("M00967_44_000000000-A3K85_1_1103_14737_20726"); + read1558.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1558.setScores(scores); + rfastqReads.push_back(read1558); + FastqRead read1559; read1559.setName("M00967_44_000000000-A3K85_1_1103_16867_20769"); + read1559.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1559.setScores(scores); + rfastqReads.push_back(read1559); + FastqRead read1560; read1560.setName("M00967_44_000000000-A3K85_1_1103_13724_20774"); + read1560.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGAAAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1560.setScores(scores); + rfastqReads.push_back(read1560); + FastqRead read1561; read1561.setName("M00967_44_000000000-A3K85_1_1103_16837_20816"); + read1561.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGACAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); read1561.setScores(scores); + rfastqReads.push_back(read1561); + FastqRead read1562; read1562.setName("M00967_44_000000000-A3K85_1_1103_7611_20874"); + read1562.setSeq("CCTGTTCGATACCCAGACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCTAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTTATCTTCCGCCCGCGCACCCTTTAAACCCCATAAATCCGGATAAAGATCGCATCCTCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(18); scores.push_back(18); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(16); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(27); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(30); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(12); read1562.setScores(scores); + rfastqReads.push_back(read1562); + FastqRead read1563; read1563.setName("M00967_44_000000000-A3K85_1_1103_6952_20934"); + read1563.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCACTAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(17); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1563.setScores(scores); + rfastqReads.push_back(read1563); + FastqRead read1564; read1564.setName("M00967_44_000000000-A3K85_1_1103_23073_20978"); + read1564.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(26); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1564.setScores(scores); + rfastqReads.push_back(read1564); + FastqRead read1565; read1565.setName("M00967_44_000000000-A3K85_1_1103_16998_20990"); + read1565.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTACACCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACCCTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCCCTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(36); read1565.setScores(scores); + rfastqReads.push_back(read1565); + FastqRead read1566; read1566.setName("M00967_44_000000000-A3K85_1_1103_22482_21000"); + read1566.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(25); read1566.setScores(scores); + rfastqReads.push_back(read1566); + FastqRead read1567; read1567.setName("M00967_44_000000000-A3K85_1_1103_21491_21026"); + read1567.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1567.setScores(scores); + rfastqReads.push_back(read1567); + FastqRead read1568; read1568.setName("M00967_44_000000000-A3K85_1_1103_14063_21055"); + read1568.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTGAGCGTCAGTAGCGCGCCGGTAAGCCGCCTTCGCAATCGGGGTTCTTCGTGATATCTACGCATTTCACCGCTACACCACGAGTTCCGCTCACTTCTTCCCCACTCGAGCCCGGCAGTTTCAACGGCACTACGGCGTTGAACCCCGCAATTTTACCGCCAAATTGGCGGGACGGCCTCGCCCCCCTTAAACCCAATAAAACCGGTCAACGCCCCCCCCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(35); scores.push_back(16); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(31); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(29); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(28); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(32); scores.push_back(38); scores.push_back(14); scores.push_back(13); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1568.setScores(scores); + rfastqReads.push_back(read1568); + FastqRead read1569; read1569.setName("M00967_44_000000000-A3K85_1_1103_6147_21060"); + read1569.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCAGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1569.setScores(scores); + rfastqReads.push_back(read1569); + FastqRead read1570; read1570.setName("M00967_44_000000000-A3K85_1_1103_4848_21126"); + read1570.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAAACCAATAAAACCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(28); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(29); scores.push_back(28); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); read1570.setScores(scores); + rfastqReads.push_back(read1570); + FastqRead read1571; read1571.setName("M00967_44_000000000-A3K85_1_1103_10532_21130"); + read1571.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1571.setScores(scores); + rfastqReads.push_back(read1571); + FastqRead read1572; read1572.setName("M00967_44_000000000-A3K85_1_1103_28149_21159"); + read1572.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1572.setScores(scores); + rfastqReads.push_back(read1572); + FastqRead read1573; read1573.setName("M00967_44_000000000-A3K85_1_1103_21357_21167"); + read1573.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAAAGGTTGAGGCTCTCAATTTTACCTCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1573.setScores(scores); + rfastqReads.push_back(read1573); + FastqRead read1574; read1574.setName("M00967_44_000000000-A3K85_1_1103_27060_21193"); + read1574.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); read1574.setScores(scores); + rfastqReads.push_back(read1574); + FastqRead read1575; read1575.setName("M00967_44_000000000-A3K85_1_1103_23468_21226"); + read1575.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGCGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(31); scores.push_back(27); scores.push_back(27); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); read1575.setScores(scores); + rfastqReads.push_back(read1575); + FastqRead read1576; read1576.setName("M00967_44_000000000-A3K85_1_1103_3992_21248"); + read1576.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGGCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCACTAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(18); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(14); 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scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(27); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); read1576.setScores(scores); + rfastqReads.push_back(read1576); + FastqRead read1577; read1577.setName("M00967_44_000000000-A3K85_1_1103_15857_21275"); + read1577.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGAGCCCCCCAATTTTTCCGCTGACTTAACAGTCCGCCCACGCACCCCTTAAACCCAATAAATACGCATAAAGCCCCCACCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); read1577.setScores(scores); + rfastqReads.push_back(read1577); + FastqRead read1578; read1578.setName("M00967_44_000000000-A3K85_1_1103_17036_21297"); + read1578.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGCAACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCATCGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1578.setScores(scores); + rfastqReads.push_back(read1578); + FastqRead read1579; read1579.setName("M00967_44_000000000-A3K85_1_1103_9234_21321"); + read1579.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCTGCACTCCAGCCATACAGTTCCAAATGCACTACCGCAGTTGAGCCGCGGGCTTTCACATCTGGCTTGCATCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1579.setScores(scores); + rfastqReads.push_back(read1579); + FastqRead read1580; read1580.setName("M00967_44_000000000-A3K85_1_1103_13437_21410"); + read1580.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTCCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTAAACCCAGTAAATCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(19); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(13); read1580.setScores(scores); + rfastqReads.push_back(read1580); + FastqRead read1581; read1581.setName("M00967_44_000000000-A3K85_1_1103_3832_21484"); + read1581.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(20); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(36); scores.push_back(17); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(36); scores.push_back(32); scores.push_back(32); read1581.setScores(scores); + rfastqReads.push_back(read1581); + FastqRead read1582; read1582.setName("M00967_44_000000000-A3K85_1_1103_23901_21531"); + read1582.setSeq("CCTGTTTGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1582.setScores(scores); + rfastqReads.push_back(read1582); + FastqRead read1583; read1583.setName("M00967_44_000000000-A3K85_1_1103_19094_21552"); + read1583.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1583.setScores(scores); + rfastqReads.push_back(read1583); + FastqRead read1584; read1584.setName("M00967_44_000000000-A3K85_1_1103_12995_21576"); + read1584.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(31); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); read1584.setScores(scores); + rfastqReads.push_back(read1584); + FastqRead read1585; read1585.setName("M00967_44_000000000-A3K85_1_1103_20828_21584"); + read1585.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1585.setScores(scores); + rfastqReads.push_back(read1585); + FastqRead read1586; read1586.setName("M00967_44_000000000-A3K85_1_1103_7153_21626"); + read1586.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(13); read1586.setScores(scores); + rfastqReads.push_back(read1586); + FastqRead read1587; read1587.setName("M00967_44_000000000-A3K85_1_1103_8225_21627"); + read1587.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(36); 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scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); read1587.setScores(scores); + rfastqReads.push_back(read1587); + FastqRead read1588; read1588.setName("M00967_44_000000000-A3K85_1_1103_19859_21678"); + read1588.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1588.setScores(scores); + rfastqReads.push_back(read1588); + FastqRead read1589; read1589.setName("M00967_44_000000000-A3K85_1_1103_20711_21784"); + read1589.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGAATTAACAGCCCGCCTACGCACCCTTTTAACCCAATAAAACCGGATAAACCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(36); 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scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); read1590.setScores(scores); + rfastqReads.push_back(read1590); + FastqRead read1591; read1591.setName("M00967_44_000000000-A3K85_1_1103_7590_21831"); + read1591.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGACCCCACATTTGACCGCTGCCTTAACAGCCCGCCTACGACCCCTTTAAACCCCATAACTCCGGAACACGCTCGCCACCTCCG"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(30); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); read1591.setScores(scores); + rfastqReads.push_back(read1591); + FastqRead read1592; read1592.setName("M00967_44_000000000-A3K85_1_1103_22836_21832"); + read1592.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1592.setScores(scores); + rfastqReads.push_back(read1592); + FastqRead read1593; read1593.setName("M00967_44_000000000-A3K85_1_1103_21801_21915"); + read1593.setSeq("CCTGTTTGATCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCACACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCGATATATCTACGCATTTCACCGCTACACCTGGCATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGCGGGTTTTCCCATCAGACTTAATTAACCCCCTGCGCGCCCTTTACGCCCAATAATTCCGGATAACGCCTCCCACCCACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(34); 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scores.push_back(27); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1593.setScores(scores); + rfastqReads.push_back(read1593); + FastqRead read1594; read1594.setName("M00967_44_000000000-A3K85_1_1103_24936_21934"); + read1594.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATTCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(33); scores.push_back(31); scores.push_back(35); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1594.setScores(scores); + rfastqReads.push_back(read1594); + FastqRead read1595; read1595.setName("M00967_44_000000000-A3K85_1_1103_24915_21934"); + read1595.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); read1595.setScores(scores); + rfastqReads.push_back(read1595); + FastqRead read1596; read1596.setName("M00967_44_000000000-A3K85_1_1103_7785_21957"); + read1596.setSeq("CCTGTTTGATACCAACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); 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scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1596.setScores(scores); + rfastqReads.push_back(read1596); + FastqRead read1597; read1597.setName("M00967_44_000000000-A3K85_1_1103_5446_21963"); + read1597.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1597.setScores(scores); + rfastqReads.push_back(read1597); + FastqRead read1598; read1598.setName("M00967_44_000000000-A3K85_1_1103_7986_21969"); + read1598.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1598.setScores(scores); + rfastqReads.push_back(read1598); + FastqRead read1599; read1599.setName("M00967_44_000000000-A3K85_1_1103_23096_22127"); + read1599.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAGAGGGTGGGCCCCTCCAATTTACTGCTGACTTACCTGTCCGCCTACGCCACCCTTAAAACCACAAAAACCCGATAACGCACGCCTCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1599.setScores(scores); + rfastqReads.push_back(read1599); + FastqRead read1600; read1600.setName("M00967_44_000000000-A3K85_1_1103_21559_22133"); + read1600.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCCCTCCGACACTCTAGTCCGGCAGTTTCCAATGCAGTACCAGGGTTGAGCCCTGGGCTTTCACATCAGACTTGCCGTACCGCCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCACCATACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(25); read1600.setScores(scores); + rfastqReads.push_back(read1600); + FastqRead read1601; read1601.setName("M00967_44_000000000-A3K85_1_1103_9508_22198"); + read1601.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); read1601.setScores(scores); + rfastqReads.push_back(read1601); + FastqRead read1602; read1602.setName("M00967_44_000000000-A3K85_1_1103_7961_22268"); + read1602.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCCAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGAATAACGCCCCGATCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(37); 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scores.push_back(28); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(32); read1602.setScores(scores); + rfastqReads.push_back(read1602); + FastqRead read1603; read1603.setName("M00967_44_000000000-A3K85_1_1103_16224_22376"); + read1603.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(25); read1603.setScores(scores); + rfastqReads.push_back(read1603); + FastqRead read1604; read1604.setName("M00967_44_000000000-A3K85_1_1103_26966_22397"); + read1604.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGAGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTGACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(18); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(18); scores.push_back(19); scores.push_back(30); scores.push_back(29); scores.push_back(29); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(27); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(25); scores.push_back(31); scores.push_back(25); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(26); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(28); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1604.setScores(scores); + rfastqReads.push_back(read1604); + FastqRead read1605; read1605.setName("M00967_44_000000000-A3K85_1_1103_13413_22405"); + read1605.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1605.setScores(scores); + rfastqReads.push_back(read1605); + FastqRead read1606; read1606.setName("M00967_44_000000000-A3K85_1_1103_13860_22631"); + read1606.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCATCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1606.setScores(scores); + rfastqReads.push_back(read1606); + FastqRead read1607; read1607.setName("M00967_44_000000000-A3K85_1_1103_21853_22673"); + read1607.setSeq("CCTGTTCGATACCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAACCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCATTCTCCTCTCCTGCACTCTAGACTTCCAGTTTGAAATGCAGCACTCAAGTTGAGCCCGAGTATTTCACATCTCACTTAAAAGTCCGCCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTCGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1607.setScores(scores); + rfastqReads.push_back(read1607); + FastqRead read1608; read1608.setName("M00967_44_000000000-A3K85_1_1103_22311_22803"); + read1608.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(29); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1608.setScores(scores); + rfastqReads.push_back(read1608); + FastqRead read1609; read1609.setName("M00967_44_000000000-A3K85_1_1103_12551_22804"); + read1609.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(13); read1609.setScores(scores); + rfastqReads.push_back(read1609); + FastqRead read1610; read1610.setName("M00967_44_000000000-A3K85_1_1103_14070_22835"); + read1610.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGCCCCGCAAATTTACCGCTGACTTGGCATCCCGCCCGCGCACCCTCTAAACCCAATAAATCCGGATAACGCTCCCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(14); scores.push_back(12); scores.push_back(25); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1610.setScores(scores); + rfastqReads.push_back(read1610); + FastqRead read1611; read1611.setName("M00967_44_000000000-A3K85_1_1103_11192_22913"); + read1611.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGATAACGCTCGCACCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(28); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(13); read1611.setScores(scores); + rfastqReads.push_back(read1611); + FastqRead read1612; read1612.setName("M00967_44_000000000-A3K85_1_1103_16956_23047"); + read1612.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCCAAACAGTTTCAAAAGCACTCCCGCAGTTGAGCCGCGGGTTTTCACTTCTGACTTGTCTGGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1612.setScores(scores); + rfastqReads.push_back(read1612); + FastqRead read1613; read1613.setName("M00967_44_000000000-A3K85_1_1103_14155_23265"); + read1613.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAAAACAGTTTCAAATGCAGGCCACAGGTTGAGCCCATGGTTTTCACATCTGACTTGCTTTCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAATCCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1613.setScores(scores); + rfastqReads.push_back(read1613); + FastqRead read1614; read1614.setName("M00967_44_000000000-A3K85_1_1103_10006_23310"); + read1614.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATAGCCAGTTTCAATGGCGGGAAGGGGTTGAGCCCCTCCATTTGACCACTGACTTAACGATCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1614.setScores(scores); + rfastqReads.push_back(read1614); + FastqRead read1615; read1615.setName("M00967_44_000000000-A3K85_1_1103_9742_23352"); + read1615.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); read1615.setScores(scores); + rfastqReads.push_back(read1615); + FastqRead read1616; read1616.setName("M00967_44_000000000-A3K85_1_1103_8399_23381"); + read1616.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); 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scores.push_back(35); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(28); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(24); read1616.setScores(scores); + rfastqReads.push_back(read1616); + FastqRead read1617; read1617.setName("M00967_44_000000000-A3K85_1_1103_16306_23388"); + read1617.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1617.setScores(scores); + rfastqReads.push_back(read1617); + FastqRead read1618; read1618.setName("M00967_44_000000000-A3K85_1_1103_16808_23425"); + read1618.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); read1618.setScores(scores); + rfastqReads.push_back(read1618); + FastqRead read1619; read1619.setName("M00967_44_000000000-A3K85_1_1103_12949_23426"); + read1619.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1619.setScores(scores); + rfastqReads.push_back(read1619); + FastqRead read1620; read1620.setName("M00967_44_000000000-A3K85_1_1103_5666_23432"); + read1620.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAAAAGCCCGACTACGGACCCTTTAAACCAAATAAATCCGGATAAAGCTCGCCACCCACGG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(17); scores.push_back(30); scores.push_back(30); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); read1620.setScores(scores); + rfastqReads.push_back(read1620); + FastqRead read1621; read1621.setName("M00967_44_000000000-A3K85_1_1103_5685_23435"); + read1621.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATTCTTCTCGCCCACTCCAGGCCCCCAGTTTCAACGGCAGGACGGGGTTGAGCCCCGACTTTTTCCCGCTGACTTAAAAGCCCGCCTAAGCACCCTTTTAACCCAATAAATCCGGATAAAGCCCGCATCCCCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(17); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(29); scores.push_back(12); read1621.setScores(scores); + rfastqReads.push_back(read1621); + FastqRead read1622; read1622.setName("M00967_44_000000000-A3K85_1_1103_22918_23456"); + read1622.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGCCATTTTACCGCTGACTTAACAGCCCGCCTACGCACCCCTTTAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1622.setScores(scores); + rfastqReads.push_back(read1622); + FastqRead read1623; read1623.setName("M00967_44_000000000-A3K85_1_1103_19074_23490"); + read1623.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1623.setScores(scores); + rfastqReads.push_back(read1623); + FastqRead read1624; read1624.setName("M00967_44_000000000-A3K85_1_1103_12043_23499"); + read1624.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(27); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); read1624.setScores(scores); + rfastqReads.push_back(read1624); + FastqRead read1625; read1625.setName("M00967_44_000000000-A3K85_1_1103_15796_23573"); + read1625.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(13); read1625.setScores(scores); + rfastqReads.push_back(read1625); + FastqRead read1626; read1626.setName("M00967_44_000000000-A3K85_1_1103_26642_23598"); + read1626.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGAAAAAGCCCGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(33); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(32); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(27); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); read1626.setScores(scores); + rfastqReads.push_back(read1626); + FastqRead read1627; read1627.setName("M00967_44_000000000-A3K85_1_1103_18406_23813"); + read1627.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); read1627.setScores(scores); + rfastqReads.push_back(read1627); + FastqRead read1628; read1628.setName("M00967_44_000000000-A3K85_1_1103_17509_23825"); + read1628.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGATCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); 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scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(28); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(13); read1628.setScores(scores); + rfastqReads.push_back(read1628); + FastqRead read1629; read1629.setName("M00967_44_000000000-A3K85_1_1103_14145_23830"); + read1629.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(24); read1629.setScores(scores); + rfastqReads.push_back(read1629); + FastqRead read1630; read1630.setName("M00967_44_000000000-A3K85_1_1103_15131_23866"); + read1630.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGCCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACCAAAGAACGCCAGTTTCAACGGCCCGATGGAGTTGAGCTCCAAAATTTTACCCCTGACTTGCCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(32); 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scores.push_back(38); scores.push_back(19); scores.push_back(19); scores.push_back(30); scores.push_back(37); scores.push_back(18); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(18); scores.push_back(33); scores.push_back(17); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(27); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(27); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); read1630.setScores(scores); + rfastqReads.push_back(read1630); + FastqRead read1631; read1631.setName("M00967_44_000000000-A3K85_1_1103_25338_23909"); + read1631.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACCGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1632.setScores(scores); + rfastqReads.push_back(read1632); + FastqRead read1633; read1633.setName("M00967_44_000000000-A3K85_1_1103_18636_23965"); + read1633.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1633.setScores(scores); + rfastqReads.push_back(read1633); + FastqRead read1634; read1634.setName("M00967_44_000000000-A3K85_1_1103_9629_23985"); + read1634.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCTGGAAGGGGTTGAGCCCCGCAATTTTACCGCTGACTTTACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); 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scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(32); 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scores.push_back(13); read1634.setScores(scores); + rfastqReads.push_back(read1634); + FastqRead read1635; read1635.setName("M00967_44_000000000-A3K85_1_1103_24174_24078"); + read1635.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGTTGAGCCCCTCCAATTTTTCCCTTGCTTTAACGTCCGCCCACGCACCCCTTTAAACCAATAAAATCCGGTAAAACACGCCCACCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1635.setScores(scores); + rfastqReads.push_back(read1635); + FastqRead read1636; read1636.setName("M00967_44_000000000-A3K85_1_1103_24682_24140"); + read1636.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1636.setScores(scores); + rfastqReads.push_back(read1636); + FastqRead read1637; read1637.setName("M00967_44_000000000-A3K85_1_1103_23311_24194"); + read1637.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(29); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); read1637.setScores(scores); + rfastqReads.push_back(read1637); + FastqRead read1638; read1638.setName("M00967_44_000000000-A3K85_1_1103_17382_24279"); + read1638.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1638.setScores(scores); + rfastqReads.push_back(read1638); + FastqRead read1639; read1639.setName("M00967_44_000000000-A3K85_1_1103_18439_24461"); + read1639.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCCCCTGCGCACCCTTTAAACCCCATAAATCCGGGTAACGCCCGTATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); read1639.setScores(scores); + rfastqReads.push_back(read1639); + FastqRead read1640; read1640.setName("M00967_44_000000000-A3K85_1_1103_12485_24494"); + read1640.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1640.setScores(scores); + rfastqReads.push_back(read1640); + FastqRead read1641; read1641.setName("M00967_44_000000000-A3K85_1_1103_19273_24515"); + read1641.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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+ rfastqReads.push_back(read1641); + FastqRead read1642; read1642.setName("M00967_44_000000000-A3K85_1_1103_20806_24688"); + read1642.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGACTTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1642.setScores(scores); + rfastqReads.push_back(read1642); + FastqRead read1643; read1643.setName("M00967_44_000000000-A3K85_1_1103_14081_24798"); + read1643.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCCCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1643.setScores(scores); + rfastqReads.push_back(read1643); + FastqRead read1644; read1644.setName("M00967_44_000000000-A3K85_1_1103_23143_24859"); + read1644.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGGGCACCCTTTAAACCCAAAAAATCCGGATAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); read1644.setScores(scores); + rfastqReads.push_back(read1644); + FastqRead read1645; read1645.setName("M00967_44_000000000-A3K85_1_1103_19977_24864"); + read1645.setSeq("CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCAGCACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGACTTGCACCGCCGCCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); 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scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); read1645.setScores(scores); + rfastqReads.push_back(read1645); + FastqRead read1646; read1646.setName("M00967_44_000000000-A3K85_1_1103_7976_24891"); + read1646.setSeq("CCTGTTCGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAGGTAGCCAGCATGCCGCCTTCGCCATCGGAGTTCCGCCTGATATCTATGCATTTCACCGCTACACCCCGAATTCCGAATACTTCTCCACCACTCAAGAACGACAGTTTCAACTGCGGGCTAGGGGTTGGCCCCATAATTTTACCACTGACCTTGCATTCCGCCCAACCCGCCCTTTACCCCCAAAAATACCGATCAACCTCCCCACCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(16); scores.push_back(32); 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scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(35); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); read1646.setScores(scores); + rfastqReads.push_back(read1646); + FastqRead read1647; read1647.setName("M00967_44_000000000-A3K85_1_1103_17926_24946"); + read1647.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1647.setScores(scores); + rfastqReads.push_back(read1647); + FastqRead read1648; read1648.setName("M00967_44_000000000-A3K85_1_1103_17911_24960"); + read1648.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCTCCCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(19); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(16); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1648.setScores(scores); + rfastqReads.push_back(read1648); + FastqRead read1649; read1649.setName("M00967_44_000000000-A3K85_1_1103_20307_25105"); + read1649.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(25); read1649.setScores(scores); + rfastqReads.push_back(read1649); + FastqRead read1650; read1650.setName("M00967_44_000000000-A3K85_1_1103_25119_25225"); + read1650.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATTGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1650.setScores(scores); + rfastqReads.push_back(read1650); + FastqRead read1651; read1651.setName("M00967_44_000000000-A3K85_1_1103_24271_25286"); + read1651.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTAATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATTACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1651.setScores(scores); + rfastqReads.push_back(read1651); + FastqRead read1652; read1652.setName("M00967_44_000000000-A3K85_1_1103_21592_25318"); + read1652.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); read1652.setScores(scores); + rfastqReads.push_back(read1652); + FastqRead read1653; read1653.setName("M00967_44_000000000-A3K85_1_1103_9716_25360"); + read1653.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); read1653.setScores(scores); + rfastqReads.push_back(read1653); + FastqRead read1654; read1654.setName("M00967_44_000000000-A3K85_1_1103_21499_25434"); + read1654.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1654.setScores(scores); + rfastqReads.push_back(read1654); + FastqRead read1655; read1655.setName("M00967_44_000000000-A3K85_1_1103_18390_25477"); + read1655.setSeq("TCTGTTCGATACCCAAGCTTTCGTGCTTCAGCGTCTGTAGGGGTCCGGTATGCTGCCTTCGCAATCGCAGTTCTGAGTGATATCCCGGCATTTCACCGCTCCACCACGCATTCCGGAGATTTCTCGGCAACTCATGAACGTACGATTCACCCGGTATACTGATCTGACCCCCACAAATTTCAGGCTTAATCGCGCTCCCGCCTTCGACACCATTAAAACCACAATACCCGTAAATCTCTCCACTCCACCCA"); + scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(18); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(16); 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scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1655.setScores(scores); + rfastqReads.push_back(read1655); + FastqRead read1656; read1656.setName("M00967_44_000000000-A3K85_1_1103_8275_25549"); + read1656.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); read1656.setScores(scores); + rfastqReads.push_back(read1656); + FastqRead read1657; read1657.setName("M00967_44_000000000-A3K85_1_1103_15433_25651"); + read1657.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGGTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGCCAAACAGTTTCAAAAGCACTCCCGCAGTTGAGCCGCGGGTTTTCACTTCTGACTTGTCTGGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); 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scores.push_back(14); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(26); read1657.setScores(scores); + rfastqReads.push_back(read1657); + FastqRead read1658; read1658.setName("M00967_44_000000000-A3K85_1_1103_17781_25709"); + read1658.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCCCTCCGACACTCTAGCCGCACAGTTTCAAAAGCACTCCCAGGGTTGAGCCCCGGGTTTTCACTTCTGACTTGCGTGGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1658.setScores(scores); + rfastqReads.push_back(read1658); + FastqRead read1659; read1659.setName("M00967_44_000000000-A3K85_1_1103_18686_25710"); + read1659.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCCAAATTTGTCCGCTGCCTTGGCATCCCGCCCGCGCCCCCCTTACAACCAATAAATTCGGACAACGCTTGCCCCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(36); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1659.setScores(scores); + rfastqReads.push_back(read1659); + FastqRead read1660; read1660.setName("M00967_44_000000000-A3K85_1_1103_14445_25720"); + read1660.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1660.setScores(scores); + rfastqReads.push_back(read1660); + FastqRead read1661; read1661.setName("M00967_44_000000000-A3K85_1_1103_19469_25768"); + read1661.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1661.setScores(scores); + rfastqReads.push_back(read1661); + FastqRead read1662; read1662.setName("M00967_44_000000000-A3K85_1_1103_24184_25771"); + read1662.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACACCCAATAATTCCGGATAACGCTCGCACCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(34); scores.push_back(38); scores.push_back(27); scores.push_back(29); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1662.setScores(scores); + rfastqReads.push_back(read1662); + FastqRead read1663; read1663.setName("M00967_44_000000000-A3K85_1_1103_17720_25860"); + read1663.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(19); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1663.setScores(scores); + rfastqReads.push_back(read1663); + FastqRead read1664; read1664.setName("M00967_44_000000000-A3K85_1_1103_10932_25944"); + read1664.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGAAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGCTCCGGGGGAGCGCCGGCCTTTTTCCGCTGCCTTTGGAAAACGCCCACGCCCCCACTTTAACCCAAAACATCCGCGACAACACCCGACCTTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(29); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(16); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); read1664.setScores(scores); + rfastqReads.push_back(read1664); + FastqRead read1665; read1665.setName("M00967_44_000000000-A3K85_1_1103_22749_25990"); + read1665.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCCCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCACTAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(30); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(36); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); read1665.setScores(scores); + rfastqReads.push_back(read1665); + FastqRead read1666; read1666.setName("M00967_44_000000000-A3K85_1_1103_22423_26014"); + read1666.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCCGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); read1666.setScores(scores); + rfastqReads.push_back(read1666); + FastqRead read1667; read1667.setName("M00967_44_000000000-A3K85_1_1103_10268_26078"); + read1667.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); read1667.setScores(scores); + rfastqReads.push_back(read1667); + FastqRead read1668; read1668.setName("M00967_44_000000000-A3K85_1_1103_19243_26081"); + read1668.setSeq("CCTGTTCGATACCCATGCTTTCGTGCCTCAGCGTCAGTTGGAGGCCGGTGAGCCGCCTTCGCAACTGGAGTTCTTCCATATATCTATGCATTCCACCGCTACACAAGGAGTTCCACTTTCTTCTTCTCCACTCAAGTTCGACAGTTTCTGATGCAGTTCTCCGGTTGACCCGAAGGCTTTACCATCGGACTTATTGACCCCCCTGCCCTCGCTTTAAGCCCAATAAATCCGGACAACCCTTCCTACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(12); scores.push_back(34); scores.push_back(32); scores.push_back(27); scores.push_back(15); scores.push_back(16); scores.push_back(28); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); read1668.setScores(scores); + rfastqReads.push_back(read1668); + FastqRead read1669; read1669.setName("M00967_44_000000000-A3K85_1_1103_19861_26172"); + read1669.setSeq("CCTGTTTGATCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGCATTCCGCTGACCTCTCCGACACTCAAGGGCAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(35); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(32); scores.push_back(25); scores.push_back(25); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1669.setScores(scores); + rfastqReads.push_back(read1669); + FastqRead read1670; read1670.setName("M00967_44_000000000-A3K85_1_1103_22708_26190"); + read1670.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCCATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTCCCGCTGAATTGGCAGGCCGCCCACCGCCCCTTTTAACCCAATAAAACCGGGTTACGCCCGCATCCTCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(36); 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scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); read1670.setScores(scores); + rfastqReads.push_back(read1670); + FastqRead read1671; read1671.setName("M00967_44_000000000-A3K85_1_1103_19630_26195"); + read1671.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); read1671.setScores(scores); + rfastqReads.push_back(read1671); + FastqRead read1672; read1672.setName("M00967_44_000000000-A3K85_1_1103_13069_26233"); + read1672.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(27); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1672.setScores(scores); + rfastqReads.push_back(read1672); + FastqRead read1673; read1673.setName("M00967_44_000000000-A3K85_1_1103_17352_26365"); + read1673.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTTACGCTGACTTTGTCTTTCGCCTTCGCACCCTTTAAACCCAATAAATCCGGGTAACGCCCCCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); read1673.setScores(scores); + rfastqReads.push_back(read1673); + FastqRead read1674; read1674.setName("M00967_44_000000000-A3K85_1_1103_14958_26517"); + read1674.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(25); read1674.setScores(scores); + rfastqReads.push_back(read1674); + FastqRead read1675; read1675.setName("M00967_44_000000000-A3K85_1_1103_16490_26749"); + read1675.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCACTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCTACCTCTACCTTACTCAAGACTGCCAGTTTCAACTGCACTTTTACGGTTGAGCCCCCAACTTTCACCATTGATTTAACATTCCACCTACGCTCCCTTTAAACCACATAAATCCGGCAAACGCTCCGATCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(18); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(30); scores.push_back(18); scores.push_back(18); scores.push_back(19); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(27); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(27); scores.push_back(29); scores.push_back(15); scores.push_back(16); scores.push_back(29); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(29); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(28); scores.push_back(28); scores.push_back(28); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); read1675.setScores(scores); + rfastqReads.push_back(read1675); + FastqRead read1676; read1676.setName("M00967_44_000000000-A3K85_1_1103_8865_26780"); + read1676.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCAGAGTTCTGCGTGATATCTATGGATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTCGAGCCCCCCAACTTTACCGCTGACTCGAACCTCCGCCTGCGCACCCTCCTAACCCAACACAACCGGACAATGCACGCCACACCCGA"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(17); scores.push_back(19); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(20); scores.push_back(18); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(18); scores.push_back(33); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(38); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); read1676.setScores(scores); + rfastqReads.push_back(read1676); + FastqRead read1677; read1677.setName("M00967_44_000000000-A3K85_1_1103_19238_26808"); + read1677.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); read1677.setScores(scores); + rfastqReads.push_back(read1677); + FastqRead read1678; read1678.setName("M00967_44_000000000-A3K85_1_1103_14032_27039"); + read1678.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1678.setScores(scores); + rfastqReads.push_back(read1678); + FastqRead read1679; read1679.setName("M00967_44_000000000-A3K85_1_1103_10226_27039"); + read1679.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATCAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(16); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(33); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(34); scores.push_back(27); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(27); scores.push_back(31); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); read1679.setScores(scores); + rfastqReads.push_back(read1679); + FastqRead read1680; read1680.setName("M00967_44_000000000-A3K85_1_1103_11742_27051"); + read1680.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTCAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); read1681.setScores(scores); + rfastqReads.push_back(read1681); + FastqRead read1682; read1682.setName("M00967_44_000000000-A3K85_1_1103_20573_27077"); + read1682.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(17); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(34); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(13); read1682.setScores(scores); + rfastqReads.push_back(read1682); + FastqRead read1683; read1683.setName("M00967_44_000000000-A3K85_1_1103_22492_27088"); + read1683.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTATCGCCCACTCAAGAACGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGAAATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTCAACCCAATAAATCCGGATAACGCCCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); 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scores.push_back(35); scores.push_back(26); read1683.setScores(scores); + rfastqReads.push_back(read1683); + FastqRead read1684; read1684.setName("M00967_44_000000000-A3K85_1_1103_22251_27182"); + read1684.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTTGGAACCCGAATTTGTCCGCGGGCATTGCATCCCGCCTGCCCCCCCCTTAAACCCCAAAAATCCCGATAAAGGCCCCACCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1684.setScores(scores); + rfastqReads.push_back(read1684); + FastqRead read1685; read1685.setName("M00967_44_000000000-A3K85_1_1103_19703_27596"); + read1685.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGCGCCCCGCGATTTGACCGCTGCCTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATCACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(31); scores.push_back(19); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); read1685.setScores(scores); + rfastqReads.push_back(read1685); + FastqRead read1686; read1686.setName("M00967_44_000000000-A3K85_1_1103_19779_27597"); + read1686.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); 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scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(37); scores.push_back(13); read1686.setScores(scores); + rfastqReads.push_back(read1686); + FastqRead read1687; read1687.setName("M00967_44_000000000-A3K85_1_1103_19779_27676"); + read1687.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGTTCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(26); scores.push_back(37); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); read1687.setScores(scores); + rfastqReads.push_back(read1687); + FastqRead read1688; read1688.setName("M00967_44_000000000-A3K85_1_1103_17354_27891"); + read1688.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCATTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCAATCTAGCAACACAGTTTCAAAAGCAGTCCCGGAGTTGAGCCCCGGGCTTTCACTTCTGACTTGCATCGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCCTA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(34); scores.push_back(27); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(27); scores.push_back(31); scores.push_back(30); read1688.setScores(scores); + rfastqReads.push_back(read1688); + FastqRead read1689; read1689.setName("M00967_44_000000000-A3K85_1_1103_11120_28150"); + read1689.setSeq("CCTGTTCGATCCCCGAAATTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTAGCAATCGGGGTTCTGCGTGATATATATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGACCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGAATTAAAAGCCCGCCTACGCACCCTTTAAAACCCATAAATCCGGCTAACGCTCGCATACTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(14); scores.push_back(15); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(29); scores.push_back(29); scores.push_back(14); scores.push_back(30); scores.push_back(15); scores.push_back(17); scores.push_back(29); scores.push_back(29); scores.push_back(17); scores.push_back(29); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(16); scores.push_back(15); scores.push_back(27); scores.push_back(30); scores.push_back(27); scores.push_back(30); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(16); scores.push_back(32); scores.push_back(30); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(29); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(27); scores.push_back(26); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(33); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(29); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(12); scores.push_back(12); read1689.setScores(scores); + rfastqReads.push_back(read1689); + FastqRead read1690; read1690.setName("M00967_44_000000000-A3K85_1_1103_19515_28163"); + read1690.setSeq("CCTGTTCGATCCCCACGCTTTCGCGCCTCAGCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTACTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGAAACACAGTTTCAAATGCAGGCCACAGGTTGAGCCCGTGGTTTTCACATCTGAATTGCGTCCCCGCCTACACGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(27); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(28); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1690.setScores(scores); + rfastqReads.push_back(read1690); + FastqRead read1691; read1691.setName("M00967_44_000000000-A3K85_1_1103_17253_28352"); + read1691.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGCCCGGGTTTGGCCCCGGATTTTTTCCGTTGACCTTGCAAAACCCCCAAGGACCCCTTTAAACCCCATAACTCCGGTAAAACCCTCCACCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(30); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1691.setScores(scores); + rfastqReads.push_back(read1691); + FastqRead read1692; read1692.setName("M00967_44_000000000-A3K85_1_1103_14802_28451"); + read1692.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCACTAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(25); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1692.setScores(scores); + rfastqReads.push_back(read1692); + FastqRead read1693; read1693.setName("M00967_44_000000000-A3K85_1_1103_17650_28535"); + read1693.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1693.setScores(scores); + rfastqReads.push_back(read1693); + FastqRead read1694; read1694.setName("M00967_44_000000000-A3K85_1_1103_17421_28782"); + read1694.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCCGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(24); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1694.setScores(scores); + rfastqReads.push_back(read1694); + FastqRead read1695; read1695.setName("M00967_44_000000000-A3K85_1_1103_13350_28920"); + read1695.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(29); scores.push_back(24); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1695.setScores(scores); + rfastqReads.push_back(read1695); + FastqRead read1696; read1696.setName("M00967_44_000000000-A3K85_1_1103_16027_28987"); + read1696.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1696.setScores(scores); + rfastqReads.push_back(read1696); + FastqRead read1697; read1697.setName("M00967_44_000000000-A3K85_1_1104_17215_1655"); + read1697.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGACCGGCAGTTTCAACGGCTGTAAGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGAACCCTTTAAACCCCATACATCCGGATTACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(18); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(33); 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scores.push_back(12); read1697.setScores(scores); + rfastqReads.push_back(read1697); + FastqRead read1698; read1698.setName("M00967_44_000000000-A3K85_1_1104_18323_2001"); + read1698.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCCCCTGCGCACCCTTTTAACCCAATAAATCCGGATAACGCCCCCCTCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(30); scores.push_back(31); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1698.setScores(scores); + rfastqReads.push_back(read1698); + FastqRead read1699; read1699.setName("M00967_44_000000000-A3K85_1_1104_11450_2198"); + read1699.setSeq("CCTGTTTGATACCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCNGCAANTTTACCGCTGACTTGGCCGGCCGCNTACGCACCCTTTANNNNCAANANATCCGNATNNCNNNNCNNNNNNNNNN"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(26); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(2); scores.push_back(26); scores.push_back(2); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(2); scores.push_back(13); scores.push_back(13); scores.push_back(2); scores.push_back(2); scores.push_back(26); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(13); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); read1699.setScores(scores); + rfastqReads.push_back(read1699); + FastqRead read1700; read1700.setName("M00967_44_000000000-A3K85_1_1104_18460_2322"); + read1700.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCCCGCATTCCGCATACTTTTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCACTAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(27); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(31); scores.push_back(14); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1700.setScores(scores); + rfastqReads.push_back(read1700); + FastqRead read1701; read1701.setName("M00967_44_000000000-A3K85_1_1104_20770_2332"); + read1701.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGNGNNNNTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNN"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(30); scores.push_back(33); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(30); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(13); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); scores.push_back(2); read1701.setScores(scores); + rfastqReads.push_back(read1701); + FastqRead read1702; read1702.setName("M00967_44_000000000-A3K85_1_1104_17412_2463"); + read1702.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGGGGTTGAGCCTTTCAATTTTACCGCTCACTTGATCTTTCGCCTTCGCAACCTTTAAACCCAATAAAACCGGATAATGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(19); scores.push_back(37); scores.push_back(18); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(19); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(27); scores.push_back(34); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1702.setScores(scores); + rfastqReads.push_back(read1702); + FastqRead read1703; read1703.setName("M00967_44_000000000-A3K85_1_1104_11758_2531"); + read1703.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(29); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(13); read1703.setScores(scores); + rfastqReads.push_back(read1703); + FastqRead read1704; read1704.setName("M00967_44_000000000-A3K85_1_1104_11319_2540"); + read1704.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCCCGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(19); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(16); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(31); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(24); read1704.setScores(scores); + rfastqReads.push_back(read1704); + FastqRead read1705; read1705.setName("M00967_44_000000000-A3K85_1_1104_20469_2587"); + read1705.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCATTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCACAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGACCCCTTTAAACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(20); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(27); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(17); scores.push_back(16); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(34); scores.push_back(33); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1705.setScores(scores); + rfastqReads.push_back(read1705); + FastqRead read1706; read1706.setName("M00967_44_000000000-A3K85_1_1104_11511_2665"); + read1706.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCCGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(13); scores.push_back(30); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(13); read1706.setScores(scores); + rfastqReads.push_back(read1706); + FastqRead read1707; read1707.setName("M00967_44_000000000-A3K85_1_1104_21727_2815"); + read1707.setSeq("CCTGTTTGATACCCACACTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1707.setScores(scores); + rfastqReads.push_back(read1707); + FastqRead read1708; read1708.setName("M00967_44_000000000-A3K85_1_1104_17962_2821"); + read1708.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTGCCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCGGCACTCCAGCTGCGCAGTTTCCAATGCAGTCCCGCGGTTGGGCCCCGGGCTTTCACATCAGACTTGCGCTGCCGCCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(31); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(17); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(29); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1708.setScores(scores); + rfastqReads.push_back(read1708); + FastqRead read1709; read1709.setName("M00967_44_000000000-A3K85_1_1104_9888_2825"); + read1709.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCCTTTAGCCCCTACCCCACGCATTCCGCATACTTCTCGACCGCTCGAGGCCGCAAGTTTCAACGGCAGGCGGGCTTTGACACCCGACACACTAACGCTGACTTTACTGCCCGCCATTGCGCCCTTTGAAACCAATTAATCCGGCGATCGCGCGTGTGCACG"); + scores.clear(); scores.push_back(29); scores.push_back(16); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(16); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(36); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(31); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); 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scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); read1709.setScores(scores); + rfastqReads.push_back(read1709); + FastqRead read1710; read1710.setName("M00967_44_000000000-A3K85_1_1104_10305_3125"); + read1710.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(26); read1710.setScores(scores); + rfastqReads.push_back(read1710); + FastqRead read1711; read1711.setName("M00967_44_000000000-A3K85_1_1104_21864_3280"); + read1711.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(38); scores.push_back(32); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(35); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(14); scores.push_back(28); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); read1711.setScores(scores); + rfastqReads.push_back(read1711); + FastqRead read1712; read1712.setName("M00967_44_000000000-A3K85_1_1104_20873_3303"); + read1712.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGAATTGACCGCTGACTTGGGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(25); read1712.setScores(scores); + rfastqReads.push_back(read1712); + FastqRead read1713; read1713.setName("M00967_44_000000000-A3K85_1_1104_13963_3327"); + read1713.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGCAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTTATCTTCCGCCTGCGGACCCTTTTAACCCAATAAATCCTGATTACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(19); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); 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scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1713.setScores(scores); + rfastqReads.push_back(read1713); + FastqRead read1714; read1714.setName("M00967_44_000000000-A3K85_1_1104_14928_3328"); + read1714.setSeq("CCTGTTCGATACACACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAAGTTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATACGGTTAACGCTCCCATCCTCCTT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(17); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(16); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); read1714.setScores(scores); + rfastqReads.push_back(read1714); + FastqRead read1715; read1715.setName("M00967_44_000000000-A3K85_1_1104_21774_3379"); + read1715.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1715.setScores(scores); + rfastqReads.push_back(read1715); + FastqRead read1716; read1716.setName("M00967_44_000000000-A3K85_1_1104_17896_3594"); + read1716.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAAACCAATAAATCCGGATAACGATCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(29); scores.push_back(26); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(25); scores.push_back(13); scores.push_back(13); read1716.setScores(scores); + rfastqReads.push_back(read1716); + FastqRead read1717; read1717.setName("M00967_44_000000000-A3K85_1_1104_10966_3647"); + read1717.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCGGCGTCAGTTACAGTCCAGTGAGTCGCCTTCGCCTCTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCACTCACCTCTCCTGCACTCCAGCTCAACAGTTTTAGATGCAGTTCCGCGGTTGAGCCGCGGGATTTCACATTTAACTTATTAAGCCGCCTATACTCCCTTTACGCCCAGTCATTCCGGACAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); read1717.setScores(scores); + rfastqReads.push_back(read1717); + FastqRead read1718; read1718.setName("M00967_44_000000000-A3K85_1_1104_20616_3695"); + read1718.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(20); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); 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scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(30); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1718.setScores(scores); + rfastqReads.push_back(read1718); + FastqRead read1719; read1719.setName("M00967_44_000000000-A3K85_1_1104_13181_3833"); + read1719.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); 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scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(33); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(25); read1719.setScores(scores); + rfastqReads.push_back(read1719); + FastqRead read1720; read1720.setName("M00967_44_000000000-A3K85_1_1104_17617_3838"); + read1720.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1720.setScores(scores); + rfastqReads.push_back(read1720); + FastqRead read1721; read1721.setName("M00967_44_000000000-A3K85_1_1104_10740_3995"); + read1721.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(15); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1721.setScores(scores); + rfastqReads.push_back(read1721); + FastqRead read1722; read1722.setName("M00967_44_000000000-A3K85_1_1104_23070_4007"); + read1722.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAAAGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(36); 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scores.push_back(24); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1722.setScores(scores); + rfastqReads.push_back(read1722); + FastqRead read1723; read1723.setName("M00967_44_000000000-A3K85_1_1104_13408_4029"); + read1723.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAAGGGTTGAGCCCCCCAATTTGTCCCCTGAATTAACGAATCGCCTACGAACCCCTTAAACCCAAAAAATCCGGATAACGCCCGCACCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); read1723.setScores(scores); + rfastqReads.push_back(read1723); + FastqRead read1724; read1724.setName("M00967_44_000000000-A3K85_1_1104_11059_4047"); + read1724.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); read1724.setScores(scores); + rfastqReads.push_back(read1724); + FastqRead read1725; read1725.setName("M00967_44_000000000-A3K85_1_1104_19788_4114"); + read1725.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCCCAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(28); scores.push_back(36); scores.push_back(13); scores.push_back(13); read1725.setScores(scores); + rfastqReads.push_back(read1725); + FastqRead read1726; read1726.setName("M00967_44_000000000-A3K85_1_1104_12750_4150"); + read1726.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGCTAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1726.setScores(scores); + rfastqReads.push_back(read1726); + FastqRead read1727; read1727.setName("M00967_44_000000000-A3K85_1_1104_17052_4215"); + read1727.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(29); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); read1727.setScores(scores); + rfastqReads.push_back(read1727); + FastqRead read1728; read1728.setName("M00967_44_000000000-A3K85_1_1104_19407_4216"); + read1728.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACACTTGACCGCTGCCTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACCCTCGCACCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(33); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); read1728.setScores(scores); + rfastqReads.push_back(read1728); + FastqRead read1729; read1729.setName("M00967_44_000000000-A3K85_1_1104_16912_4229"); + read1729.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCGCAAATTGAACGCCGGCTTGGCATCCCGCCCGCGCACCCCTTTAACCCCATAAATCCGGGTAACCACCCCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1729.setScores(scores); + rfastqReads.push_back(read1729); + FastqRead read1730; read1730.setName("M00967_44_000000000-A3K85_1_1104_16822_4236"); + read1730.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1730.setScores(scores); + rfastqReads.push_back(read1730); + FastqRead read1731; read1731.setName("M00967_44_000000000-A3K85_1_1104_18013_4286"); + read1731.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(29); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1731.setScores(scores); + rfastqReads.push_back(read1731); + FastqRead read1732; read1732.setName("M00967_44_000000000-A3K85_1_1104_20110_4317"); + read1732.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACCTGGCAGGCCGCCTAAGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); 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scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(12); read1732.setScores(scores); + rfastqReads.push_back(read1732); + FastqRead read1733; read1733.setName("M00967_44_000000000-A3K85_1_1104_17235_4407"); + read1733.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(12); read1733.setScores(scores); + rfastqReads.push_back(read1733); + FastqRead read1734; read1734.setName("M00967_44_000000000-A3K85_1_1104_19888_4463"); + read1734.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1734.setScores(scores); + rfastqReads.push_back(read1734); + FastqRead read1735; read1735.setName("M00967_44_000000000-A3K85_1_1104_23207_4515"); + read1735.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1736.setScores(scores); + rfastqReads.push_back(read1736); + FastqRead read1737; read1737.setName("M00967_44_000000000-A3K85_1_1104_9818_4548"); + read1737.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); read1737.setScores(scores); + rfastqReads.push_back(read1737); + FastqRead read1738; read1738.setName("M00967_44_000000000-A3K85_1_1104_14142_4567"); + read1738.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCCGGCCGGGGTTGAGCCCCGACATTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); read1738.setScores(scores); + rfastqReads.push_back(read1738); + FastqRead read1739; read1739.setName("M00967_44_000000000-A3K85_1_1104_9633_4798"); + read1739.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(24); read1739.setScores(scores); + rfastqReads.push_back(read1739); + FastqRead read1740; read1740.setName("M00967_44_000000000-A3K85_1_1104_14440_4840"); + read1740.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGTGCCCCCCAAATTGACCGCCTACTTGGCATCCCGCCTGCGCACCCCTTAAACCCAATAAATACGGGTAAAGCTCCCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1740.setScores(scores); + rfastqReads.push_back(read1740); + FastqRead read1741; read1741.setName("M00967_44_000000000-A3K85_1_1104_16860_4871"); + read1741.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1741.setScores(scores); + rfastqReads.push_back(read1741); + FastqRead read1742; read1742.setName("M00967_44_000000000-A3K85_1_1104_13732_4872"); + read1742.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCCCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); read1742.setScores(scores); + rfastqReads.push_back(read1742); + FastqRead read1743; read1743.setName("M00967_44_000000000-A3K85_1_1104_16625_4941"); + read1743.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1743.setScores(scores); + rfastqReads.push_back(read1743); + FastqRead read1744; read1744.setName("M00967_44_000000000-A3K85_1_1104_22056_5001"); + read1744.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(19); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1744.setScores(scores); + rfastqReads.push_back(read1744); + FastqRead read1745; read1745.setName("M00967_44_000000000-A3K85_1_1104_16404_5025"); + read1745.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCATTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1745.setScores(scores); + rfastqReads.push_back(read1745); + FastqRead read1746; read1746.setName("M00967_44_000000000-A3K85_1_1104_15718_5093"); + read1746.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATTGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); read1746.setScores(scores); + rfastqReads.push_back(read1746); + FastqRead read1747; read1747.setName("M00967_44_000000000-A3K85_1_1104_13165_5151"); + read1747.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGTGTCAGTTACAGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAAGAATTCCACTTGCCTCTCCTGCACTCTAGCTGAGCAGTTTCTAAAGCATTCCCATAGTTGAGCTTTGGGTTTTCACTTCGGACTTGCTCTGCCACCTACTCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCTCCATACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1747.setScores(scores); + rfastqReads.push_back(read1747); + FastqRead read1748; read1748.setName("M00967_44_000000000-A3K85_1_1104_12801_5175"); + read1748.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(30); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(28); scores.push_back(28); scores.push_back(13); scores.push_back(25); scores.push_back(13); read1749.setScores(scores); + rfastqReads.push_back(read1749); + FastqRead read1750; read1750.setName("M00967_44_000000000-A3K85_1_1104_8785_5272"); + read1750.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGCCCACCAGTTTCAACGGCTCGACGAGGTTGCGCCCCCCAATTTTACCGCTGACTTGCTCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1750.setScores(scores); + rfastqReads.push_back(read1750); + FastqRead read1751; read1751.setName("M00967_44_000000000-A3K85_1_1104_18453_5285"); + read1751.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCCTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); read1751.setScores(scores); + rfastqReads.push_back(read1751); + FastqRead read1752; read1752.setName("M00967_44_000000000-A3K85_1_1104_7569_5336"); + read1752.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACAACACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGGCCCGCAATTTGAACGCAGACTTGGCATCCCGCCTGGGAACCCTTTAAACACAAACAATCCGGATAAAGCCAGCAACATCCGT"); + scores.clear(); scores.push_back(30); scores.push_back(32); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(18); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(15); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(36); scores.push_back(33); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(38); 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scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); read1752.setScores(scores); + rfastqReads.push_back(read1752); + FastqRead read1753; read1753.setName("M00967_44_000000000-A3K85_1_1104_7761_5367"); + read1753.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(38); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(28); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(12); read1753.setScores(scores); + rfastqReads.push_back(read1753); + FastqRead read1754; read1754.setName("M00967_44_000000000-A3K85_1_1104_25011_5390"); + read1754.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTTCGCCCGCCCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(15); scores.push_back(37); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(14); scores.push_back(32); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); read1754.setScores(scores); + rfastqReads.push_back(read1754); + FastqRead read1755; read1755.setName("M00967_44_000000000-A3K85_1_1104_13300_5408"); + read1755.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCCGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGAATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); 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scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(30); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(12); read1755.setScores(scores); + rfastqReads.push_back(read1755); + FastqRead read1756; read1756.setName("M00967_44_000000000-A3K85_1_1104_13880_5445"); + read1756.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(25); read1756.setScores(scores); + rfastqReads.push_back(read1756); + FastqRead read1757; read1757.setName("M00967_44_000000000-A3K85_1_1104_18796_5484"); + read1757.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACCGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAATACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCATTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); read1757.setScores(scores); + rfastqReads.push_back(read1757); + FastqRead read1758; read1758.setName("M00967_44_000000000-A3K85_1_1104_22050_5493"); + read1758.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGT"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(25); read1758.setScores(scores); + rfastqReads.push_back(read1758); + FastqRead read1759; read1759.setName("M00967_44_000000000-A3K85_1_1104_23362_5544"); + read1759.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1759.setScores(scores); + rfastqReads.push_back(read1759); + FastqRead read1760; read1760.setName("M00967_44_000000000-A3K85_1_1104_19603_5551"); + read1760.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(24); read1760.setScores(scores); + rfastqReads.push_back(read1760); + FastqRead read1761; read1761.setName("M00967_44_000000000-A3K85_1_1104_19050_5551"); + read1761.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(25); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(12); read1761.setScores(scores); + rfastqReads.push_back(read1761); + FastqRead read1762; read1762.setName("M00967_44_000000000-A3K85_1_1104_19631_5555"); + read1762.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCACTTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTCCGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(20); scores.push_back(38); scores.push_back(18); scores.push_back(32); scores.push_back(33); 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scores.push_back(39); scores.push_back(15); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); read1762.setScores(scores); + rfastqReads.push_back(read1762); + FastqRead read1763; read1763.setName("M00967_44_000000000-A3K85_1_1104_23172_5566"); + read1763.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCCACGGCTCGAAGAGGTTGAGCCCCCCCATTTTACCGCTGACTTGATCTTCCCCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(34); scores.push_back(38); scores.push_back(26); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); read1763.setScores(scores); + rfastqReads.push_back(read1763); + FastqRead read1764; read1764.setName("M00967_44_000000000-A3K85_1_1104_5887_5646"); + read1764.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCACTTTTACGGTTGAGCCGCAAACTTTCACACCTGACTTAACAATCCACCTACGCTCCCTTTACACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(29); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1764.setScores(scores); + rfastqReads.push_back(read1764); + FastqRead read1765; read1765.setName("M00967_44_000000000-A3K85_1_1104_8474_5715"); + read1765.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAATCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCATTCTCCTCTCCTGCACTCTAGACTTCCAGTTTGAAATGCAGCACTCAAGTTGAGCCCGAGTATTTCACATCTCACTTAAAAGTCCGCCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTCGCCACCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(18); scores.push_back(18); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(17); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1765.setScores(scores); + rfastqReads.push_back(read1765); + FastqRead read1766; read1766.setName("M00967_44_000000000-A3K85_1_1104_8460_5727"); + read1766.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAATCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGCATTTCACCGCTACACTAGGAATTCCATTCTCCTCTCCTGCACTCTAGACTTCCAGTTTGAAATGCAGCACTCAAGTTGAGCCCGAGTATTTCACATCTCACTTAAAAGTCCGCCTACGCTCCCTTTACGCCCAGTAAATCCGGACAACGCTCGCCACCTACG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(27); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(38); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); read1766.setScores(scores); + rfastqReads.push_back(read1766); + FastqRead read1767; read1767.setName("M00967_44_000000000-A3K85_1_1104_21615_5772"); + read1767.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(25); read1767.setScores(scores); + rfastqReads.push_back(read1767); + FastqRead read1768; read1768.setName("M00967_44_000000000-A3K85_1_1104_12473_5784"); + read1768.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCCGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCCCGGGCTTTCCCTTCAGCCTTGCACAACCGTCTCCGCCCCCTTTAACCCCAGTAAATCCGGATAACCCCTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(15); scores.push_back(28); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(30); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); read1768.setScores(scores); + rfastqReads.push_back(read1768); + FastqRead read1769; read1769.setName("M00967_44_000000000-A3K85_1_1104_17552_5825"); + read1769.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(13); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(29); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1769.setScores(scores); + rfastqReads.push_back(read1769); + FastqRead read1770; read1770.setName("M00967_44_000000000-A3K85_1_1104_5835_5830"); + read1770.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCCTTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGACCCCCGCAATTTTCCCGCTGACTTGGCAGGCCGCCTACGCACCCTTTCCACCCCCTAAATCCGGATCACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(17); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(16); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(29); scores.push_back(35); scores.push_back(33); scores.push_back(17); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(14); scores.push_back(30); scores.push_back(34); scores.push_back(16); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(30); scores.push_back(31); scores.push_back(30); scores.push_back(31); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(27); scores.push_back(30); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); read1770.setScores(scores); + rfastqReads.push_back(read1770); + FastqRead read1771; read1771.setName("M00967_44_000000000-A3K85_1_1104_13105_5862"); + read1771.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCCCCGCTTTTTTACCGCTGAATTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); read1771.setScores(scores); + rfastqReads.push_back(read1771); + FastqRead read1772; read1772.setName("M00967_44_000000000-A3K85_1_1104_7496_5871"); + read1772.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTTACTTGGCAGGCCGCCTACGAACCCTTTAAACCCAATAAATCCGGAACACGCTCCCACCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(35); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); read1772.setScores(scores); + rfastqReads.push_back(read1772); + FastqRead read1773; read1773.setName("M00967_44_000000000-A3K85_1_1104_24650_5875"); + read1773.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGGTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(13); read1773.setScores(scores); + rfastqReads.push_back(read1773); + FastqRead read1774; read1774.setName("M00967_44_000000000-A3K85_1_1104_20461_5935"); + read1774.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); 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+ read1775.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1775.setScores(scores); + rfastqReads.push_back(read1775); + FastqRead read1776; read1776.setName("M00967_44_000000000-A3K85_1_1104_11942_5969"); + read1776.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(32); read1776.setScores(scores); + rfastqReads.push_back(read1776); + FastqRead read1777; read1777.setName("M00967_44_000000000-A3K85_1_1104_20936_6017"); + read1777.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(28); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1778.setScores(scores); + rfastqReads.push_back(read1778); + FastqRead read1779; read1779.setName("M00967_44_000000000-A3K85_1_1104_22040_6241"); + read1779.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); read1779.setScores(scores); + rfastqReads.push_back(read1779); + FastqRead read1780; read1780.setName("M00967_44_000000000-A3K85_1_1104_6625_6269"); + read1780.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCACGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); 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scores.push_back(32); scores.push_back(13); read1780.setScores(scores); + rfastqReads.push_back(read1780); + FastqRead read1781; read1781.setName("M00967_44_000000000-A3K85_1_1104_6964_6301"); + read1781.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGACCGCCAGTTTCAACGGCTGTCCGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTTAACCCAATAAATCCGGATAACGCCCGCATCTTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); read1781.setScores(scores); + rfastqReads.push_back(read1781); + FastqRead read1782; read1782.setName("M00967_44_000000000-A3K85_1_1104_20931_6358"); + read1782.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGACCGGGGTGGGCCCCGGATTTTTTCCTCTGTCTTTGCAAACACCCCACCCCCCCCTTAAACCCAAAAAATACCGGTAACGCCCCCCCCCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1782.setScores(scores); + rfastqReads.push_back(read1782); + FastqRead read1783; read1783.setName("M00967_44_000000000-A3K85_1_1104_14031_6413"); + read1783.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGTTGAGCCCCCCAATTTGACCACTGACTTAACGATCCGCCTACCCACCCTTTAAACCCACTAAATCCCGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1783.setScores(scores); + rfastqReads.push_back(read1783); + FastqRead read1784; read1784.setName("M00967_44_000000000-A3K85_1_1104_7635_6436"); + read1784.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGAATTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAACTACTGATAACGCCTGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(29); scores.push_back(31); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(28); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1785.setScores(scores); + rfastqReads.push_back(read1785); + FastqRead read1786; read1786.setName("M00967_44_000000000-A3K85_1_1104_9813_6625"); + read1786.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTCGAGCCCCGCGATTTGACCGCTGACTTGAGAGTACGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(34); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1786.setScores(scores); + rfastqReads.push_back(read1786); + FastqRead read1787; read1787.setName("M00967_44_000000000-A3K85_1_1104_15015_6635"); + read1787.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1787.setScores(scores); + rfastqReads.push_back(read1787); + FastqRead read1788; read1788.setName("M00967_44_000000000-A3K85_1_1104_17276_6663"); + read1788.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1788.setScores(scores); + rfastqReads.push_back(read1788); + FastqRead read1789; read1789.setName("M00967_44_000000000-A3K85_1_1104_8198_6678"); + read1789.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTATGCACCCCTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1789.setScores(scores); + rfastqReads.push_back(read1789); + FastqRead read1790; read1790.setName("M00967_44_000000000-A3K85_1_1104_24980_6786"); + read1790.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); 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scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(13); read1791.setScores(scores); + rfastqReads.push_back(read1791); + FastqRead read1792; read1792.setName("M00967_44_000000000-A3K85_1_1104_24258_7230"); + read1792.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTCCCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(28); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1792.setScores(scores); + rfastqReads.push_back(read1792); + FastqRead read1793; read1793.setName("M00967_44_000000000-A3K85_1_1104_18168_7405"); + read1793.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); read1793.setScores(scores); + rfastqReads.push_back(read1793); + FastqRead read1794; read1794.setName("M00967_44_000000000-A3K85_1_1104_19352_7587"); + read1794.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCCATTTTACCGCTGACTTGGCAGGCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(30); read1794.setScores(scores); + rfastqReads.push_back(read1794); + FastqRead read1795; read1795.setName("M00967_44_000000000-A3K85_1_1104_11279_7599"); + read1795.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGAAAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1795.setScores(scores); + rfastqReads.push_back(read1795); + FastqRead read1796; read1796.setName("M00967_44_000000000-A3K85_1_1104_14629_7712"); + read1796.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGCAGGGGTTGAGCCCCGCAAATTTACCGCTGACTTGGCCTCCCCCCTGCGCCCCCTTTTAAACCAATAAATCCTGATAACGCCCCCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1796.setScores(scores); + rfastqReads.push_back(read1796); + FastqRead read1797; read1797.setName("M00967_44_000000000-A3K85_1_1104_20620_7769"); + read1797.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGGGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCCCCCTTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(20); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(26); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(36); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); read1797.setScores(scores); + rfastqReads.push_back(read1797); + FastqRead read1798; read1798.setName("M00967_44_000000000-A3K85_1_1104_11677_7778"); + read1798.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1798.setScores(scores); + rfastqReads.push_back(read1798); + FastqRead read1799; read1799.setName("M00967_44_000000000-A3K85_1_1104_20607_7782"); + read1799.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTTCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAATTCCGGATAACCCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); 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scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1799.setScores(scores); + rfastqReads.push_back(read1799); + FastqRead read1800; read1800.setName("M00967_44_000000000-A3K85_1_1104_23115_7826"); + read1800.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAAATTTACCGATGACTTGATCTTCCGCCCGCGCACCCTTTAAACCCCATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(13); read1800.setScores(scores); + rfastqReads.push_back(read1800); + FastqRead read1801; read1801.setName("M00967_44_000000000-A3K85_1_1104_18260_7896"); + read1801.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGGTGAGCCCCCAAATTTTACCGCTGACTTGGCATCCCCCCCGCGCACCCCTTAAACCCAAAAAATACGGAGAACACACCCCCCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1801.setScores(scores); + rfastqReads.push_back(read1801); + FastqRead read1802; read1802.setName("M00967_44_000000000-A3K85_1_1104_26297_8002"); + read1802.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAACCCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCCCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTTGTCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(34); scores.push_back(25); scores.push_back(26); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(24); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1802.setScores(scores); + rfastqReads.push_back(read1802); + FastqRead read1803; read1803.setName("M00967_44_000000000-A3K85_1_1104_25870_8024"); + read1803.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(28); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1803.setScores(scores); + rfastqReads.push_back(read1803); + FastqRead read1804; read1804.setName("M00967_44_000000000-A3K85_1_1104_8011_8037"); + read1804.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGAGCCTCCCAATTTTAACGCTGACCTCATCTTCCCCCCTTGCACCCTTTTAACCCAATAAATTCGGGTAACCCCCTCCTCCCACC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(20); scores.push_back(36); scores.push_back(17); scores.push_back(15); scores.push_back(36); 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scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(32); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); read1804.setScores(scores); + rfastqReads.push_back(read1804); + FastqRead read1805; read1805.setName("M00967_44_000000000-A3K85_1_1104_16328_8069"); + read1805.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTACATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(28); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1805.setScores(scores); + rfastqReads.push_back(read1805); + FastqRead read1806; read1806.setName("M00967_44_000000000-A3K85_1_1104_9404_8096"); + read1806.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATCAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(31); scores.push_back(31); scores.push_back(28); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(24); read1806.setScores(scores); + rfastqReads.push_back(read1806); + FastqRead read1807; read1807.setName("M00967_44_000000000-A3K85_1_1104_25127_8223"); + read1807.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(17); scores.push_back(31); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(24); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1807.setScores(scores); + rfastqReads.push_back(read1807); + FastqRead read1808; read1808.setName("M00967_44_000000000-A3K85_1_1104_19167_8271"); + read1808.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTTAGCCCCTCAATTTTAACGCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATCCCGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(18); scores.push_back(33); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(39); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(28); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1808.setScores(scores); + rfastqReads.push_back(read1808); + FastqRead read1809; read1809.setName("M00967_44_000000000-A3K85_1_1104_4922_8343"); + read1809.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(30); scores.push_back(13); read1809.setScores(scores); + rfastqReads.push_back(read1809); + FastqRead read1810; read1810.setName("M00967_44_000000000-A3K85_1_1104_11127_8346"); + read1810.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGACCGGGGTGGGCCCCGAAATTTTTTCCCTGCCTTGTCCAAACACCCACCCACCCCTTAAACCCAAAAAAACCCGGTAAACCTCCCCTCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(35); scores.push_back(12); read1810.setScores(scores); + rfastqReads.push_back(read1810); + FastqRead read1811; read1811.setName("M00967_44_000000000-A3K85_1_1104_19431_8363"); + read1811.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCCAGTTCCACAGTTTCCAAAGCCGTTCCGCGGTTAAGCCACGGGCTTTCACTTCAGACTTGCAGAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1811.setScores(scores); + rfastqReads.push_back(read1811); + FastqRead read1812; read1812.setName("M00967_44_000000000-A3K85_1_1104_13546_8394"); + read1812.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1812.setScores(scores); + rfastqReads.push_back(read1812); + FastqRead read1813; read1813.setName("M00967_44_000000000-A3K85_1_1104_19883_8434"); + read1813.setSeq("CCTGTTTGCTCCCCGCGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1813.setScores(scores); + rfastqReads.push_back(read1813); + FastqRead read1814; read1814.setName("M00967_44_000000000-A3K85_1_1104_8775_8486"); + read1814.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1814.setScores(scores); + rfastqReads.push_back(read1814); + FastqRead read1815; read1815.setName("M00967_44_000000000-A3K85_1_1104_6827_8493"); + read1815.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCCAGCCTGCCAGTTTCCAATGCAGCCCCGGGGTTGAGCCCCGGTATTTCCCATCAGACTTGGCAGGCCGCCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCTCCATACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1815.setScores(scores); + rfastqReads.push_back(read1815); + FastqRead read1816; read1816.setName("M00967_44_000000000-A3K85_1_1104_14722_8494"); + read1816.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCACTCGAGTTCGCCAGTTTCAACGGCGGGGACCGGTTGGACCCGGGACTTTTTCCCCTCCCTCTGCAAAACCCCCCCCCCCCCCCTCACACCACAAAATACACTGAACACCCGCCCCCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); read1816.setScores(scores); + rfastqReads.push_back(read1816); + FastqRead read1817; read1817.setName("M00967_44_000000000-A3K85_1_1104_26435_8512"); + read1817.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCCATAAATCCGGATAACTCCCGCCTCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(33); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1817.setScores(scores); + rfastqReads.push_back(read1817); + FastqRead read1818; read1818.setName("M00967_44_000000000-A3K85_1_1104_25502_8521"); + read1818.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(32); read1818.setScores(scores); + rfastqReads.push_back(read1818); + FastqRead read1819; read1819.setName("M00967_44_000000000-A3K85_1_1104_12540_8523"); + read1819.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1819.setScores(scores); + rfastqReads.push_back(read1819); + FastqRead read1820; read1820.setName("M00967_44_000000000-A3K85_1_1104_13433_8536"); + read1820.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(13); read1820.setScores(scores); + rfastqReads.push_back(read1820); + FastqRead read1821; read1821.setName("M00967_44_000000000-A3K85_1_1104_22022_8575"); + read1821.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(25); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); read1821.setScores(scores); + rfastqReads.push_back(read1821); + FastqRead read1822; read1822.setName("M00967_44_000000000-A3K85_1_1104_6914_8620"); + read1822.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGCGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACCTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACCGCGTTGAGCCCCGCCTTTTTACCGCTGACTTGGCATCCCGCCTCCGCACCCTTTAAACCCAATAAAACCGGCTAACGCCCCCATCCCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(15); scores.push_back(15); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(19); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(30); scores.push_back(31); scores.push_back(27); scores.push_back(32); scores.push_back(35); scores.push_back(15); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(30); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(28); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read1822.setScores(scores); + rfastqReads.push_back(read1822); + FastqRead read1823; read1823.setName("M00967_44_000000000-A3K85_1_1104_16661_8628"); + read1823.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1823.setScores(scores); + rfastqReads.push_back(read1823); + FastqRead read1824; read1824.setName("M00967_44_000000000-A3K85_1_1104_11076_8638"); + read1824.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTACTTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(28); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1824.setScores(scores); + rfastqReads.push_back(read1824); + FastqRead read1825; read1825.setName("M00967_44_000000000-A3K85_1_1104_10754_8858"); + read1825.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(17); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(28); scores.push_back(31); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1825.setScores(scores); + rfastqReads.push_back(read1825); + FastqRead read1826; read1826.setName("M00967_44_000000000-A3K85_1_1104_11205_8888"); + read1826.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCGGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1827.setScores(scores); + rfastqReads.push_back(read1827); + FastqRead read1828; read1828.setName("M00967_44_000000000-A3K85_1_1104_25679_8933"); + read1828.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); read1828.setScores(scores); + rfastqReads.push_back(read1828); + FastqRead read1829; read1829.setName("M00967_44_000000000-A3K85_1_1104_21726_9001"); + read1829.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTACGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); read1829.setScores(scores); + rfastqReads.push_back(read1829); + FastqRead read1830; read1830.setName("M00967_44_000000000-A3K85_1_1104_13045_9032"); + read1830.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(32); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1830.setScores(scores); + rfastqReads.push_back(read1830); + FastqRead read1831; read1831.setName("M00967_44_000000000-A3K85_1_1104_18581_9042"); + read1831.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(13); read1831.setScores(scores); + rfastqReads.push_back(read1831); + FastqRead read1832; read1832.setName("M00967_44_000000000-A3K85_1_1104_18059_9129"); + read1832.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(37); scores.push_back(13); read1832.setScores(scores); + rfastqReads.push_back(read1832); + FastqRead read1833; read1833.setName("M00967_44_000000000-A3K85_1_1104_22553_9134"); + read1833.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1833.setScores(scores); + rfastqReads.push_back(read1833); + FastqRead read1834; read1834.setName("M00967_44_000000000-A3K85_1_1104_16292_9140"); + read1834.setSeq("CCTGTTTGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGTGCTCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTGCTCGCACACTCTAGCCCGACAGTATCAGAGGCAGGGCCGGGTTGAGGCCCCGGGATTTCACCCCTACCTTACAGACCCGCCTCGCCACCCTTTAAACCCAATAAATCGGGAAAACGCTTCAACCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(29); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(27); scores.push_back(37); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(34); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); read1834.setScores(scores); + rfastqReads.push_back(read1834); + FastqRead read1835; read1835.setName("M00967_44_000000000-A3K85_1_1104_12907_9239"); + read1835.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(34); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(13); read1835.setScores(scores); + rfastqReads.push_back(read1835); + FastqRead read1836; read1836.setName("M00967_44_000000000-A3K85_1_1104_7136_9279"); + read1836.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGCCACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCACAGCCGGCTACGCCCCCTTTACCCCCAGTAACTCCGGTTAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1836.setScores(scores); + rfastqReads.push_back(read1836); + FastqRead read1837; read1837.setName("M00967_44_000000000-A3K85_1_1104_17424_9339"); + read1837.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(25); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1837.setScores(scores); + rfastqReads.push_back(read1837); + FastqRead read1838; read1838.setName("M00967_44_000000000-A3K85_1_1104_15063_9339"); + read1838.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(31); scores.push_back(31); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); read1838.setScores(scores); + rfastqReads.push_back(read1838); + FastqRead read1839; read1839.setName("M00967_44_000000000-A3K85_1_1104_6757_9353"); + read1839.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1839.setScores(scores); + rfastqReads.push_back(read1839); + FastqRead read1840; read1840.setName("M00967_44_000000000-A3K85_1_1104_13313_9356"); + read1840.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); 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scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1840.setScores(scores); + rfastqReads.push_back(read1840); + FastqRead read1841; read1841.setName("M00967_44_000000000-A3K85_1_1104_6974_9379"); + read1841.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCAGTTCCGCGGTTAAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1841.setScores(scores); + rfastqReads.push_back(read1841); + FastqRead read1842; read1842.setName("M00967_44_000000000-A3K85_1_1104_14433_9398"); + read1842.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCCATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1842.setScores(scores); + rfastqReads.push_back(read1842); + FastqRead read1843; read1843.setName("M00967_44_000000000-A3K85_1_1104_27828_9432"); + read1843.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGGTTGGCCCCCCAAATTGACCGCTGACTCCGCCATCCGCCTGCGCACCCCTTTAACCCCAAAAAACCGGATAAAGCCCCCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read1843.setScores(scores); + rfastqReads.push_back(read1843); + FastqRead read1844; read1844.setName("M00967_44_000000000-A3K85_1_1104_22639_9454"); + read1844.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); read1844.setScores(scores); + rfastqReads.push_back(read1844); + FastqRead read1845; read1845.setName("M00967_44_000000000-A3K85_1_1104_19637_9495"); + read1845.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1845.setScores(scores); + rfastqReads.push_back(read1845); + FastqRead read1846; read1846.setName("M00967_44_000000000-A3K85_1_1104_21327_9556"); + read1846.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCCAATTTGACCGCTGCCTTGGCATCCCGCCCGCGCACCCTTTAAACCCAATAAATACCGATAAAGCTCCCATCCTCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(32); 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scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(28); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(28); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(13); read1846.setScores(scores); + rfastqReads.push_back(read1846); + FastqRead read1847; read1847.setName("M00967_44_000000000-A3K85_1_1104_24707_9615"); + read1847.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGTTTGAGCCCGAAATTTTTACCCCTGCCTTACAAAACCCCCCCCCACCCCCTTAAACCCAATAAACCAGCATAACACCCCCCTCTCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); read1847.setScores(scores); + rfastqReads.push_back(read1847); + FastqRead read1848; read1848.setName("M00967_44_000000000-A3K85_1_1104_13256_9636"); + read1848.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(13); read1848.setScores(scores); + rfastqReads.push_back(read1848); + FastqRead read1849; read1849.setName("M00967_44_000000000-A3K85_1_1104_16521_9684"); + read1849.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGACGGGGTGGGCCCCGGATTTTTTTCGCCGGCTTGTCAAACAGCCCCCGCACCCCCTTAACCCACCAAAAACCGAGAAAAACCCCCTCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(12); read1849.setScores(scores); + rfastqReads.push_back(read1849); + FastqRead read1850; read1850.setName("M00967_44_000000000-A3K85_1_1104_24096_9698"); + read1850.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1850.setScores(scores); + rfastqReads.push_back(read1850); + FastqRead read1851; read1851.setName("M00967_44_000000000-A3K85_1_1104_11342_9704"); + read1851.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1851.setScores(scores); + rfastqReads.push_back(read1851); + FastqRead read1852; read1852.setName("M00967_44_000000000-A3K85_1_1104_6351_9726"); + read1852.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1852.setScores(scores); + rfastqReads.push_back(read1852); + FastqRead read1853; read1853.setName("M00967_44_000000000-A3K85_1_1104_6361_9748"); + read1853.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGGGGGGCCCCGGCTTTTTTTCGCTTGCTTGACCAAACGCCCCCGCCCCCCTTTAAACCCCTACAAACCGAACACACCCCCCACCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(29); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(24); read1853.setScores(scores); + rfastqReads.push_back(read1853); + FastqRead read1854; read1854.setName("M00967_44_000000000-A3K85_1_1104_18909_9875"); + read1854.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(25); read1854.setScores(scores); + rfastqReads.push_back(read1854); + FastqRead read1855; read1855.setName("M00967_44_000000000-A3K85_1_1104_28199_9877"); + read1855.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGCATTTTTACCGCTGACTTAAAAGCCCGACTACGCACCCTTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); 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scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(28); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1856.setScores(scores); + rfastqReads.push_back(read1856); + FastqRead read1857; read1857.setName("M00967_44_000000000-A3K85_1_1104_14159_10000"); + read1857.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGACCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGCATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(27); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); read1857.setScores(scores); + rfastqReads.push_back(read1857); + FastqRead read1858; read1858.setName("M00967_44_000000000-A3K85_1_1104_17165_10005"); + read1858.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); read1858.setScores(scores); + rfastqReads.push_back(read1858); + FastqRead read1859; read1859.setName("M00967_44_000000000-A3K85_1_1104_23360_10105"); + read1859.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGATGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACACCCACATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(38); 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scores.push_back(29); scores.push_back(16); scores.push_back(15); scores.push_back(12); scores.push_back(29); scores.push_back(27); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(34); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); read1859.setScores(scores); + rfastqReads.push_back(read1859); + FastqRead read1860; read1860.setName("M00967_44_000000000-A3K85_1_1104_14248_10150"); + read1860.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1860.setScores(scores); + rfastqReads.push_back(read1860); + FastqRead read1861; read1861.setName("M00967_44_000000000-A3K85_1_1104_27137_10210"); + read1861.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1861.setScores(scores); + rfastqReads.push_back(read1861); + FastqRead read1862; read1862.setName("M00967_44_000000000-A3K85_1_1104_25593_10262"); + read1862.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGCGTCAGTTGCAGTCCAGTAAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACACCTGACTTAACAATCAACCTACGACCCCTTCAAACACAATAAATCAGGATCACGCACGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); 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scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(28); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(24); read1862.setScores(scores); + rfastqReads.push_back(read1862); + FastqRead read1863; read1863.setName("M00967_44_000000000-A3K85_1_1104_8760_10290"); + read1863.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1863.setScores(scores); + rfastqReads.push_back(read1863); + FastqRead read1864; read1864.setName("M00967_44_000000000-A3K85_1_1104_4312_10516"); + read1864.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCACTTCAGACTTGCTTAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(27); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1864.setScores(scores); + rfastqReads.push_back(read1864); + FastqRead read1865; read1865.setName("M00967_44_000000000-A3K85_1_1104_4330_10520"); + read1865.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCGGGGTTAAGCCCCGGGCTTTCACTTCAGCCTTGCTTAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(37); 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scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(34); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1865.setScores(scores); + rfastqReads.push_back(read1865); + FastqRead read1866; read1866.setName("M00967_44_000000000-A3K85_1_1104_3523_10559"); + read1866.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(36); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); read1866.setScores(scores); + rfastqReads.push_back(read1866); + FastqRead read1867; read1867.setName("M00967_44_000000000-A3K85_1_1104_22200_10638"); + read1867.setSeq("CCTGTTTGATACCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCATGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(13); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(31); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(31); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); read1867.setScores(scores); + rfastqReads.push_back(read1867); + FastqRead read1868; read1868.setName("M00967_44_000000000-A3K85_1_1104_18565_10742"); + read1868.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTTAACCCAATAAATCCGGGTAACGCTCGCCTCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(32); read1869.setScores(scores); + rfastqReads.push_back(read1869); + FastqRead read1870; read1870.setName("M00967_44_000000000-A3K85_1_1104_23378_10761"); + read1870.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1870.setScores(scores); + rfastqReads.push_back(read1870); + FastqRead read1871; read1871.setName("M00967_44_000000000-A3K85_1_1104_18177_10778"); + read1871.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1871.setScores(scores); + rfastqReads.push_back(read1871); + FastqRead read1872; read1872.setName("M00967_44_000000000-A3K85_1_1104_20823_10838"); + read1872.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTCCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1872.setScores(scores); + rfastqReads.push_back(read1872); + FastqRead read1873; read1873.setName("M00967_44_000000000-A3K85_1_1104_4174_10851"); + read1873.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGCCTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAACTCCGGTTAACGCTCGCATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(29); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(25); scores.push_back(14); read1873.setScores(scores); + rfastqReads.push_back(read1873); + FastqRead read1874; read1874.setName("M00967_44_000000000-A3K85_1_1104_18406_10895"); + read1874.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCCGGGCAGTTTCCAAAGCAGTCCCGCAGTTGGGCCGCGGGCTTTCACTTCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1874.setScores(scores); + rfastqReads.push_back(read1874); + FastqRead read1875; read1875.setName("M00967_44_000000000-A3K85_1_1104_21868_10918"); + read1875.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1875.setScores(scores); + rfastqReads.push_back(read1875); + FastqRead read1876; read1876.setName("M00967_44_000000000-A3K85_1_1104_19137_10930"); + read1876.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCGGCTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(28); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(29); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); read1876.setScores(scores); + rfastqReads.push_back(read1876); + FastqRead read1877; read1877.setName("M00967_44_000000000-A3K85_1_1104_17725_10951"); + read1877.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1877.setScores(scores); + rfastqReads.push_back(read1877); + FastqRead read1878; read1878.setName("M00967_44_000000000-A3K85_1_1104_6518_10983"); + read1878.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCCAAAATTGACCGCTGACTTGGCATCCCGCCTGCGCCCCCCTTAAACCCAATAAAACCCGGTAACGCCCCCCTCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); read1878.setScores(scores); + rfastqReads.push_back(read1878); + FastqRead read1879; read1879.setName("M00967_44_000000000-A3K85_1_1104_28556_10998"); + read1879.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGGAGAGGGTGGGCCCCTCCATTTTTTCGCTGACCATAATGCTCGCCTACGCACCCCTTTAAACCAATAAAAACGGATAACCCTCGCAACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); read1879.setScores(scores); + rfastqReads.push_back(read1879); + FastqRead read1880; read1880.setName("M00967_44_000000000-A3K85_1_1104_19200_11047"); + read1880.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATCACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(25); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(38); scores.push_back(13); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(36); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(36); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); read1880.setScores(scores); + rfastqReads.push_back(read1880); + FastqRead read1881; read1881.setName("M00967_44_000000000-A3K85_1_1104_6536_11056"); + read1881.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(20); scores.push_back(35); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(13); read1882.setScores(scores); + rfastqReads.push_back(read1882); + FastqRead read1883; read1883.setName("M00967_44_000000000-A3K85_1_1104_11872_11093"); + read1883.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGCCCCGAAATTTGACCGCTGCCTTGGCATCCCCCCTGCGCACCCTTTTAACCCACTAAATCCGGATAACGCTCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); 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scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read1883.setScores(scores); + rfastqReads.push_back(read1883); + FastqRead read1884; read1884.setName("M00967_44_000000000-A3K85_1_1104_25891_11170"); + read1884.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCAGTTCCGCGGTTAAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1884.setScores(scores); + rfastqReads.push_back(read1884); + FastqRead read1885; read1885.setName("M00967_44_000000000-A3K85_1_1104_12169_11216"); + read1885.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(28); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1885.setScores(scores); + rfastqReads.push_back(read1885); + FastqRead read1886; read1886.setName("M00967_44_000000000-A3K85_1_1104_3100_11250"); + read1886.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTAGCAGTCCAGTGACCTGCCTTCGCCATCGGCGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCCCGAATTCCGCTCACCTCTACTGTACTCAAGCCTGCCAGTTCCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCACCCTTTAAACACAATCAATCCGGCTAACGCTCGCATACTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(32); scores.push_back(19); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(20); scores.push_back(35); scores.push_back(20); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(20); scores.push_back(32); scores.push_back(38); scores.push_back(20); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(15); scores.push_back(15); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(13); scores.push_back(27); scores.push_back(27); scores.push_back(27); scores.push_back(12); scores.push_back(29); scores.push_back(16); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(27); scores.push_back(28); scores.push_back(34); scores.push_back(33); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(13); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); read1886.setScores(scores); + rfastqReads.push_back(read1886); + FastqRead read1887; read1887.setName("M00967_44_000000000-A3K85_1_1104_3118_11257"); + read1887.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGCCTTCACAATCCACCTACGCACCCTTTAACCACAATAACTCCGGATAACGCTCGCATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(20); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(18); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(18); scores.push_back(30); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(27); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(32); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(15); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(13); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); read1887.setScores(scores); + rfastqReads.push_back(read1887); + FastqRead read1888; read1888.setName("M00967_44_000000000-A3K85_1_1104_22804_11304"); + read1888.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCACTCTAGCTTAACAGTTTCCAAAGCAGTCCCATGGTTGAGCCTTGGGCTTTCACTTCAGACTTGCTATGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(38); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1888.setScores(scores); + rfastqReads.push_back(read1888); + FastqRead read1889; read1889.setName("M00967_44_000000000-A3K85_1_1104_11825_11322"); + read1889.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); 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scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(15); scores.push_back(16); scores.push_back(27); scores.push_back(27); scores.push_back(31); scores.push_back(27); scores.push_back(27); scores.push_back(34); scores.push_back(30); scores.push_back(27); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(35); scores.push_back(15); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); read1889.setScores(scores); + rfastqReads.push_back(read1889); + FastqRead read1890; read1890.setName("M00967_44_000000000-A3K85_1_1104_9159_11363"); + read1890.setSeq("CCTGTTTGATCTCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGCGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(27); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1890.setScores(scores); + rfastqReads.push_back(read1890); + FastqRead read1891; read1891.setName("M00967_44_000000000-A3K85_1_1104_20121_11371"); + read1891.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCCACTGGTGTTCCTCCTAATATCTATGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCCAGCTGGACAGTTTCAAATGCACTCCCGGGGTTGAGCCCCGGGTTTTCACATCTGACTTGCCCTGCCACCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1891.setScores(scores); + rfastqReads.push_back(read1891); + FastqRead read1892; read1892.setName("M00967_44_000000000-A3K85_1_1104_25075_11439"); + read1892.setSeq("CCTGTTTGCTACCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCTGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACCACGAATTCCGCCTGCCTCTCCCGCACTCTAGCTACCCAGTTTCCACAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTTTGCCTTGCGCATCCGTCTACGCTCCCTTTAAACCCAGTCAATCCGGATACCGCTCGCCCCCTCCG"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(35); scores.push_back(18); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(18); scores.push_back(31); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(15); 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scores.push_back(16); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(12); read1892.setScores(scores); + rfastqReads.push_back(read1892); + FastqRead read1893; read1893.setName("M00967_44_000000000-A3K85_1_1104_25065_11457"); + read1893.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGCAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTGCCTCTCCAGCACTCTAGCTACACAGTTTCCAAAGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACTTCAGACTTGCGCAGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(30); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1893.setScores(scores); + rfastqReads.push_back(read1893); + FastqRead read1894; read1894.setName("M00967_44_000000000-A3K85_1_1104_10615_11475"); + read1894.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(32); read1894.setScores(scores); + rfastqReads.push_back(read1894); + FastqRead read1895; read1895.setName("M00967_44_000000000-A3K85_1_1104_3818_11499"); + read1895.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGTGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCTAGGCTCCCAGTTTCAACGGCGGAACGGGGGTGAGCCCCCCGGTTTTACCGCTGACTTTAGAGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATTACGCTCGCATCCCCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); 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scores.push_back(32); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); read1895.setScores(scores); + rfastqReads.push_back(read1895); + FastqRead read1896; read1896.setName("M00967_44_000000000-A3K85_1_1104_3401_11637"); + read1896.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTTAGCCCCCCAATTTTACCGCTTGCTTGGCATCCCGCGCGCGCACCCCTTAAAACCCAAAAAAACGGGGAACGCCCCCACCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(18); scores.push_back(29); scores.push_back(32); 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scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(13); read1896.setScores(scores); + rfastqReads.push_back(read1896); + FastqRead read1897; read1897.setName("M00967_44_000000000-A3K85_1_1104_17657_11662"); + read1897.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCCGGGTTGAGCCCCCGCATTTGACCGCTGACTTAACAGCCCGCCTACGCCCCCTTTAAACCCAATAAATCCGGATAAAGCCCCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(26); scores.push_back(24); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(29); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); read1897.setScores(scores); + rfastqReads.push_back(read1897); + FastqRead read1898; read1898.setName("M00967_44_000000000-A3K85_1_1104_14580_11677"); + read1898.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(14); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1898.setScores(scores); + rfastqReads.push_back(read1898); + FastqRead read1899; read1899.setName("M00967_44_000000000-A3K85_1_1104_20760_11711"); + read1899.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGATAACACTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(28); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1899.setScores(scores); + rfastqReads.push_back(read1899); + FastqRead read1900; read1900.setName("M00967_44_000000000-A3K85_1_1104_18045_11748"); + read1900.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(18); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(27); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(31); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); read1900.setScores(scores); + rfastqReads.push_back(read1900); + FastqRead read1901; read1901.setName("M00967_44_000000000-A3K85_1_1104_24143_11749"); + read1901.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(37); 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scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(33); scores.push_back(36); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(33); read1901.setScores(scores); + rfastqReads.push_back(read1901); + FastqRead read1902; read1902.setName("M00967_44_000000000-A3K85_1_1104_7967_11800"); + read1902.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATACGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(31); scores.push_back(35); scores.push_back(18); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(25); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(28); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1902.setScores(scores); + rfastqReads.push_back(read1902); + FastqRead read1903; read1903.setName("M00967_44_000000000-A3K85_1_1104_15472_11806"); + read1903.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(34); scores.push_back(31); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(13); read1903.setScores(scores); + rfastqReads.push_back(read1903); + FastqRead read1904; read1904.setName("M00967_44_000000000-A3K85_1_1104_12930_11808"); + read1904.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGATCAACAGTTTCAAATGCAGTTCTGCGGTTAAGCCGCAGGATTTCACATCTGACTTGTCAACCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1904.setScores(scores); + rfastqReads.push_back(read1904); + FastqRead read1905; read1905.setName("M00967_44_000000000-A3K85_1_1104_10575_11830"); + read1905.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTAACAGTCCAGTAAGCCGCCTTCGCCACTGGCGTTCCTCCTAATATCTACGCATTTCACCGCTACCCTAGGCATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCACTCCGGGGGTTCACCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCACTACCTCCGGCTAACGCTTGCCCCCTAC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(29); scores.push_back(16); scores.push_back(35); scores.push_back(16); scores.push_back(31); scores.push_back(18); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(36); scores.push_back(35); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(16); scores.push_back(16); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(35); scores.push_back(16); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(16); scores.push_back(36); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(29); scores.push_back(31); scores.push_back(15); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(17); scores.push_back(31); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(16); scores.push_back(30); scores.push_back(27); scores.push_back(30); scores.push_back(27); scores.push_back(15); scores.push_back(30); scores.push_back(15); scores.push_back(29); scores.push_back(13); scores.push_back(29); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(32); read1905.setScores(scores); + rfastqReads.push_back(read1905); + FastqRead read1906; read1906.setName("M00967_44_000000000-A3K85_1_1104_6233_11834"); + read1906.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCCCGCTTTGCCCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(18); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(19); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(19); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(25); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1906.setScores(scores); + rfastqReads.push_back(read1906); + FastqRead read1907; read1907.setName("M00967_44_000000000-A3K85_1_1104_22380_11878"); + read1907.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCCACGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(26); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); read1907.setScores(scores); + rfastqReads.push_back(read1907); + FastqRead read1908; read1908.setName("M00967_44_000000000-A3K85_1_1104_25591_11919"); + read1908.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCCGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); 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scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); read1908.setScores(scores); + rfastqReads.push_back(read1908); + FastqRead read1909; read1909.setName("M00967_44_000000000-A3K85_1_1104_25609_11922"); + read1909.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACCCCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(27); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(30); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1909.setScores(scores); + rfastqReads.push_back(read1909); + FastqRead read1910; read1910.setName("M00967_44_000000000-A3K85_1_1104_19611_11936"); + read1910.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1910.setScores(scores); + rfastqReads.push_back(read1910); + FastqRead read1911; read1911.setName("M00967_44_000000000-A3K85_1_1104_8970_11951"); + read1911.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCCCAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCCCTCCAGCCTTGCGCCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATACCGCTTGCCCCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(28); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(24); scores.push_back(29); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(32); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(13); read1911.setScores(scores); + rfastqReads.push_back(read1911); + FastqRead read1912; read1912.setName("M00967_44_000000000-A3K85_1_1104_26292_12008"); + read1912.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCCTCAGCGTCAGTCTGGCGCCGGTACGCTGCCTTCGCAATCGGAGTTCTGCGCGATATCTATGCATTTCACCGCTACACCGCGCATTCCGCGTACTTCTCGCCAACTCAAGTCTGCCAGTTTCAACGGCTCGACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTAACGGACCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(31); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(25); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(12); scores.push_back(35); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(28); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(24); scores.push_back(31); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1912.setScores(scores); + rfastqReads.push_back(read1912); + FastqRead read1913; read1913.setName("M00967_44_000000000-A3K85_1_1104_7545_12023"); + read1913.setSeq("CCTGTTCGATACCCACACTTTCGTGCCTGAGCGTCAGTTGAGCGCCGGAATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCTCACTCAAGACACCCAGTTTCAACGGCCCGACGGGGTTGAGCCCCTCAATTTTACCGCTGCCTTAAACTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(31); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(13); scores.push_back(26); read1913.setScores(scores); + rfastqReads.push_back(read1913); + FastqRead read1914; read1914.setName("M00967_44_000000000-A3K85_1_1104_26807_12035"); + read1914.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(15); scores.push_back(27); scores.push_back(25); scores.push_back(15); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(12); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(25); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(29); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1914.setScores(scores); + rfastqReads.push_back(read1914); + FastqRead read1915; read1915.setName("M00967_44_000000000-A3K85_1_1104_24990_12075"); + read1915.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCCCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(32); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(13); read1915.setScores(scores); + rfastqReads.push_back(read1915); + FastqRead read1916; read1916.setName("M00967_44_000000000-A3K85_1_1104_8263_12086"); + read1916.setSeq("CCTGTTCGATCCCCACGCTTTCGTGCTTCAGCGTCAGTAGGAAGCCGGCATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCTTCCACTCAAGATCGCCAGTTTCAATGGCGGGAAGGGGTTGAGCCCCTCCATTTGACCCCTGACTTAAAGAACCCCCCACGCACCCTTTAAACACAATAAACCCGGATAACTCTCGCCTCCTCCT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(25); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); read1916.setScores(scores); + rfastqReads.push_back(read1916); + FastqRead read1917; read1917.setName("M00967_44_000000000-A3K85_1_1104_4134_12161"); + read1917.setSeq("CCTGTTCGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCACTGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGCCTCGCAGTTTCCAAAGCGGTTCCGCGGTTGAGCCACGGGCTTTCACTTCAGACTTGCGACGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTCGCCCCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(28); scores.push_back(29); scores.push_back(24); scores.push_back(29); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(30); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(28); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(35); scores.push_back(28); scores.push_back(33); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(13); read1917.setScores(scores); + rfastqReads.push_back(read1917); + FastqRead read1918; read1918.setName("M00967_44_000000000-A3K85_1_1104_27283_12162"); + read1918.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCTGCTCACCTCTCCTGCACTCCAGTCACATAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTACATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(30); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(24); read1918.setScores(scores); + rfastqReads.push_back(read1918); + FastqRead read1919; read1919.setName("M00967_44_000000000-A3K85_1_1104_14719_12167"); + read1919.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(34); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(34); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(29); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(26); read1919.setScores(scores); + rfastqReads.push_back(read1919); + FastqRead read1920; read1920.setName("M00967_44_000000000-A3K85_1_1104_15406_12184"); + read1920.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read1920.setScores(scores); + rfastqReads.push_back(read1920); + FastqRead read1921; read1921.setName("M00967_44_000000000-A3K85_1_1104_14699_12204"); + read1921.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGAGCCCCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); read1921.setScores(scores); + rfastqReads.push_back(read1921); + FastqRead read1922; read1922.setName("M00967_44_000000000-A3K85_1_1104_11812_12239"); + read1922.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCCTTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTCCACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(19); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); 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scores.push_back(27); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(25); scores.push_back(25); scores.push_back(32); scores.push_back(30); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(31); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); read1922.setScores(scores); + rfastqReads.push_back(read1922); + FastqRead read1923; read1923.setName("M00967_44_000000000-A3K85_1_1104_26672_12271"); + read1923.setSeq("CCTGTTTGCTCCCCACGCTTTCGTGCCTCAGTGTCAGTTACAGTCCAGCAAATCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTCCACCGCTACACTAGGAATTCCATTTGCCCCTCCTGCACTCGAGTCCAACAGTTTTGGTAGTAGTGCCGAGGTTAAGCCTCGGAGTTGCGCTACCAACTTGTCAAACCACCTACGCACCCTTTACGCCCAGTCATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(20); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(13); read1923.setScores(scores); + rfastqReads.push_back(read1923); + FastqRead read1924; read1924.setName("M00967_44_000000000-A3K85_1_1104_3680_12350"); + read1924.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGACGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(18); 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scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(34); scores.push_back(36); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(30); scores.push_back(33); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(13); read1924.setScores(scores); + rfastqReads.push_back(read1924); + FastqRead read1925; read1925.setName("M00967_44_000000000-A3K85_1_1104_5443_12369"); + read1925.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); 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scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(13); read1925.setScores(scores); + rfastqReads.push_back(read1925); + FastqRead read1926; read1926.setName("M00967_44_000000000-A3K85_1_1104_3663_12426"); + read1926.setSeq("CCTGTTCGATCCCCACACTTTCGTGCCTGAGCGTCAGTTGCGCGCCGGTATGCTGCCTTCGCAATCGGTGTTCTGCGTGCTCTCTATGCATTTCACCGCTACACCCCGCATTCCGCATCCTTCTCGCTCACTCAAGAAAACCAGTTTCCACGGCTCCCCCAGGTTGAGCCCCTCCATTTTCCCCTCGACTTGAATTTCCCCCTGCGCCCCCTTTAACCCCCCTAAATCCCGGTAAACCCCGCCTCCCCCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(37); 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scores.push_back(31); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(12); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1926.setScores(scores); + rfastqReads.push_back(read1926); + FastqRead read1927; read1927.setName("M00967_44_000000000-A3K85_1_1104_28218_12477"); + read1927.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCCACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTCAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); 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scores.push_back(36); scores.push_back(12); scores.push_back(33); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(35); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(25); scores.push_back(28); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1927.setScores(scores); + rfastqReads.push_back(read1927); + FastqRead read1928; read1928.setName("M00967_44_000000000-A3K85_1_1104_3016_12486"); + read1928.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(38); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(30); scores.push_back(28); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(37); scores.push_back(36); scores.push_back(31); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); read1928.setScores(scores); + rfastqReads.push_back(read1928); + FastqRead read1929; read1929.setName("M00967_44_000000000-A3K85_1_1104_10709_12664"); + read1929.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(36); scores.push_back(30); scores.push_back(38); scores.push_back(37); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(28); scores.push_back(30); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); read1929.setScores(scores); + rfastqReads.push_back(read1929); + FastqRead read1930; read1930.setName("M00967_44_000000000-A3K85_1_1104_7475_12746"); + read1930.setSeq("CCCTTTCGCTCCCCTGGCCTTCGTGCCTCAGCGTCAGTTAATGTCCAGGAACCCGCCTTCGCCACGCGTGTTCCTCTCGATATCTACGCATTTCACTGCTACACCGAGAATTCCGGTTCCCCCTCCATTACTCTAGTCTCGCAGTATCATGTGCCGTCCGCGGGTTGAGCCCGCGCCTTTCACACACGACTTACGAAACAGCCTACGCACGCTTTACGCCCAGTGATTCCGAACAACGCTTGAGACCT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(15); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(29); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(13); scores.push_back(15); scores.push_back(24); scores.push_back(15); read1930.setScores(scores); + rfastqReads.push_back(read1930); + FastqRead read1931; read1931.setName("M00967_44_000000000-A3K85_1_1104_17811_12782"); + read1931.setSeq("CCTGCTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGAATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACGCAAGACAATCAGTTTCAACGGCGGGCAGCGGACGAGCCTCTCTATGTTAACCTTGACGTTACCGTGCCACTTCAAAAACATCACACACAATAAAACCGGCTATAGCTACCATCCTCAC"); + scores.clear(); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(29); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(37); scores.push_back(16); scores.push_back(16); scores.push_back(15); scores.push_back(15); scores.push_back(32); scores.push_back(36); scores.push_back(16); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(38); scores.push_back(16); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(31); scores.push_back(37); scores.push_back(31); scores.push_back(35); scores.push_back(16); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(16); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(16); scores.push_back(14); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(29); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(27); scores.push_back(36); scores.push_back(14); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(14); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(17); scores.push_back(17); scores.push_back(27); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(16); scores.push_back(29); scores.push_back(31); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(12); scores.push_back(27); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(15); scores.push_back(27); scores.push_back(27); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(15); scores.push_back(15); scores.push_back(28); scores.push_back(27); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(38); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(12); read1931.setScores(scores); + rfastqReads.push_back(read1931); + FastqRead read1932; read1932.setName("M00967_44_000000000-A3K85_1_1104_23685_12790"); + read1932.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACCGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCGGTACTCCAGCAAAAAAGTTTCCAAAGCCATTCCGCGGTTGAGCCGCGGGCTTTCACTTCAGACTTTCTTCGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(13); read1932.setScores(scores); + rfastqReads.push_back(read1932); + FastqRead read1933; read1933.setName("M00967_44_000000000-A3K85_1_1104_26965_12883"); + read1933.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(13); read1933.setScores(scores); + rfastqReads.push_back(read1933); + FastqRead read1934; read1934.setName("M00967_44_000000000-A3K85_1_1104_12833_12957"); + read1934.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(20); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(30); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(27); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1934.setScores(scores); + rfastqReads.push_back(read1934); + FastqRead read1935; read1935.setName("M00967_44_000000000-A3K85_1_1104_2573_12995"); + read1935.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCCGCACTCCAGTTACACAGTTTCAAAAGCCGTTCCGACGTTGGGCCGCGGGATTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); 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scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(34); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(35); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(13); read1935.setScores(scores); + rfastqReads.push_back(read1935); + FastqRead read1936; read1936.setName("M00967_44_000000000-A3K85_1_1104_5139_13157"); + read1936.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTGCAGACCAGGAAGCCGCCTTCGCCACTGGTGTTCCTCCATATCTCTACGCATTTCACCGCTACACATGGAATTCCACTTCCCTCTTCTGCACTCAAGTCAACCAGTTTCCAATGACCCTCCACGGTTAAGCCGTGGGCTTTCACATCAGACTTAATTAACCACCTGCGCGCTCTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1936.setScores(scores); + rfastqReads.push_back(read1936); + FastqRead read1937; read1937.setName("M00967_44_000000000-A3K85_1_1104_16358_13218"); + read1937.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAAAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCCTCCGCCTGCGCACCCTTTAAAACCAATTAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(31); scores.push_back(33); 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scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(28); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(32); scores.push_back(12); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(24); read1937.setScores(scores); + rfastqReads.push_back(read1937); + FastqRead read1938; read1938.setName("M00967_44_000000000-A3K85_1_1104_2533_13244"); + read1938.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCCGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); 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scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(36); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(13); read1938.setScores(scores); + rfastqReads.push_back(read1938); + FastqRead read1939; read1939.setName("M00967_44_000000000-A3K85_1_1104_8491_13331"); + read1939.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCGAGCTGCACAGTTTCCAAAGCAGTTCCGGGGTTGGGCCCCGGCATTTCACTCCAGACTTGCGCTGCCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); read1939.setScores(scores); + rfastqReads.push_back(read1939); + FastqRead read1940; read1940.setName("M00967_44_000000000-A3K85_1_1104_16846_13370"); + read1940.setSeq("CCTGTTCGATACCCACGCTTTCATGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGGCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGGTAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(12); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(32); scores.push_back(34); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(29); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(28); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(25); scores.push_back(13); read1940.setScores(scores); + rfastqReads.push_back(read1940); + FastqRead read1941; read1941.setName("M00967_44_000000000-A3K85_1_1104_9917_13371"); + read1941.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCACTTACCTCTCCTGCACTCCAGTCATACAGTTTCCAAAGCAGTCCGGGGGTTGAGCCCCCGCCTTTCACTTCAGACTTGCATCACCGTCTACGCTCCCTTTCCACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(17); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(17); scores.push_back(35); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(12); scores.push_back(27); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(36); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(32); scores.push_back(33); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1941.setScores(scores); + rfastqReads.push_back(read1941); + FastqRead read1942; read1942.setName("M00967_44_000000000-A3K85_1_1104_21146_13421"); + read1942.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTCACCGTCCAGTAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTACCCCTCCGGCACTCCAGCGCGCCAGTTCCCACTGCAGTCCCGCGGTTGGGCCGCGGGCTTTCCCACCAGGCTTAACGCCCCGCCTGCGCTCCCTTTACACCCAGTAAATCCGGATAACCCTTGCCCCATCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(18); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(18); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(27); scores.push_back(33); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(12); scores.push_back(34); scores.push_back(38); scores.push_back(31); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(13); scores.push_back(15); scores.push_back(27); scores.push_back(15); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(25); scores.push_back(31); scores.push_back(12); scores.push_back(24); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(36); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(29); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(35); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); read1942.setScores(scores); + rfastqReads.push_back(read1942); + FastqRead read1943; read1943.setName("M00967_44_000000000-A3K85_1_1104_7472_13455"); + read1943.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGACCCGGGTGGGCCCGGCATTTTTTCCCCTGCCTTTTCAAAACGCCCCCCCCCCCCCTTAAACCCAAAAAAACCGGTAACGCCCCCCACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(28); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); read1943.setScores(scores); + rfastqReads.push_back(read1943); + FastqRead read1944; read1944.setName("M00967_44_000000000-A3K85_1_1104_16819_13504"); + read1944.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGATGACCTCTCCGACACTCAAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); read1944.setScores(scores); + rfastqReads.push_back(read1944); + FastqRead read1945; read1945.setName("M00967_44_000000000-A3K85_1_1104_26606_13580"); + read1945.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCCGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(33); scores.push_back(30); scores.push_back(37); scores.push_back(13); read1945.setScores(scores); + rfastqReads.push_back(read1945); + FastqRead read1946; read1946.setName("M00967_44_000000000-A3K85_1_1104_22540_13596"); + read1946.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTTGGCCGCCTTCGCCACCGGTGTTCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCGCCAACCTCTACTTCACTCAAGAAAGCCAGTTTCAACTGCAGTCTACAGGTTAAGCCCGTAGTTTTCACAGCTGACTTGGCTTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); read1946.setScores(scores); + rfastqReads.push_back(read1946); + FastqRead read1947; read1947.setName("M00967_44_000000000-A3K85_1_1104_12931_13651"); + read1947.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTGATCTCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTCCAGCACTCCAGTTACACAGTTTCCAAAGCCGTTCCGCAGTTGAGCCGCGGGCTTTCACTTCAGACTTGCACAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(13); read1947.setScores(scores); + rfastqReads.push_back(read1947); + FastqRead read1948; read1948.setName("M00967_44_000000000-A3K85_1_1104_14298_13656"); + read1948.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(31); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(25); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); read1948.setScores(scores); + rfastqReads.push_back(read1948); + FastqRead read1949; read1949.setName("M00967_44_000000000-A3K85_1_1104_14282_13667"); + read1949.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTAACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(19); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(34); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(27); scores.push_back(35); scores.push_back(37); scores.push_back(15); scores.push_back(13); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(31); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(14); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); read1949.setScores(scores); + rfastqReads.push_back(read1949); + FastqRead read1950; read1950.setName("M00967_44_000000000-A3K85_1_1104_27976_13687"); + read1950.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTATCGTCCAGTCATCCGCCTTCGCCACTGGTGTTCTTCCTTATATCTACGCATTTCACCGCTACACAAGGAATTCCGCTGACCTCTCCGACACTCTAGGGAAACAGTTTCAAATGCAGTTCACGGGTTGAGCCCGTGGATTTCACATCTGACTTGTCTCTCCGGCTGCACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(17); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(39); 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scores.push_back(39); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(12); scores.push_back(34); scores.push_back(14); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1950.setScores(scores); + rfastqReads.push_back(read1950); + FastqRead read1951; read1951.setName("M00967_44_000000000-A3K85_1_1104_19232_13777"); + read1951.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCCGGGTTGCGCCCCGAAATTTGACCGCCGACTTGGCATCCCCCCCCGCCACCCTTTAAAACCAACAAATCCGGGTAACGCCCGCATACCCCG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(17); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(37); 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scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(31); scores.push_back(30); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(36); scores.push_back(31); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); read1951.setScores(scores); + rfastqReads.push_back(read1951); + FastqRead read1952; read1952.setName("M00967_44_000000000-A3K85_1_1104_17747_13789"); + read1952.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTAACCACCCCTTTAACCCAAAAAATCCGGGAAACGCCCGCATCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(38); scores.push_back(38); scores.push_back(24); scores.push_back(29); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); 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scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); read1952.setScores(scores); + rfastqReads.push_back(read1952); + FastqRead read1953; read1953.setName("M00967_44_000000000-A3K85_1_1104_26553_13825"); + read1953.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCATCCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGCAAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(38); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(29); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(31); scores.push_back(25); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(13); scores.push_back(26); scores.push_back(29); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(26); scores.push_back(31); scores.push_back(33); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1953.setScores(scores); + rfastqReads.push_back(read1953); + FastqRead read1954; read1954.setName("M00967_44_000000000-A3K85_1_1104_26212_13904"); + read1954.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(12); scores.push_back(36); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(25); scores.push_back(26); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(32); scores.push_back(32); scores.push_back(30); scores.push_back(13); scores.push_back(26); scores.push_back(28); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(24); read1954.setScores(scores); + rfastqReads.push_back(read1954); + FastqRead read1955; read1955.setName("M00967_44_000000000-A3K85_1_1104_9328_13911"); + read1955.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCCACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGCCCCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGCCCGCTTACTTGAGAGTCCGCCTGCGCACCCTTCAAACCCAACACCTCCGGCTTACGCCCCCACCCCCCG"); + scores.clear(); scores.push_back(29); scores.push_back(32); scores.push_back(29); scores.push_back(30); scores.push_back(32); scores.push_back(16); scores.push_back(18); scores.push_back(16); scores.push_back(29); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(17); scores.push_back(32); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(14); scores.push_back(36); scores.push_back(33); scores.push_back(16); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(14); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(37); scores.push_back(17); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(14); scores.push_back(29); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(14); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(30); scores.push_back(27); scores.push_back(34); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(16); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(32); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(27); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(27); scores.push_back(15); scores.push_back(27); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(31); scores.push_back(31); scores.push_back(32); scores.push_back(34); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); read1955.setScores(scores); + rfastqReads.push_back(read1955); + FastqRead read1956; read1956.setName("M00967_44_000000000-A3K85_1_1104_3300_13940"); + read1956.setSeq("CCTGTTTGCTCCCCACGCTTTCGCGCCTCACCGTCAGTTGCTGTCCAGCAGACCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGTCTGCCTCTCCAGTACTCAAGATCAACAGTTTCAAATGCAGTTCTGCGGTTAAGCCGCAGGATTTCACATCTGACTTGTCAACCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(34); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(36); 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scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(26); scores.push_back(38); scores.push_back(25); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(30); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(30); scores.push_back(31); scores.push_back(13); scores.push_back(30); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(36); scores.push_back(12); scores.push_back(31); scores.push_back(30); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(12); read1956.setScores(scores); + rfastqReads.push_back(read1956); + FastqRead read1957; read1957.setName("M00967_44_000000000-A3K85_1_1104_7871_13952"); + read1957.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACTGTCCAGTAAGCCGCCTTCGCCGCCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGATACTCAAGACCAACAGTTTCAAATGCAGTTCGGGGGTTGAGCCCCCGGATTTCACATCTGACTTGTCAGCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(39); scores.push_back(39); 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scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(14); scores.push_back(24); read1957.setScores(scores); + rfastqReads.push_back(read1957); + FastqRead read1958; read1958.setName("M00967_44_000000000-A3K85_1_1104_10321_14031"); + read1958.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAAAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGA"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(28); scores.push_back(34); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(12); read1958.setScores(scores); + rfastqReads.push_back(read1958); + FastqRead read1959; read1959.setName("M00967_44_000000000-A3K85_1_1104_15706_14032"); + read1959.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGCAAAGGGTGGGCCCCTCCAATTTTCCCCTGCCTTAACTGTCCCCCTACCCCCCCCCTTAAACCACAAAAACCCGGTAAACCCCCCCTCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); 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scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(32); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1960.setScores(scores); + rfastqReads.push_back(read1960); + FastqRead read1961; read1961.setName("M00967_44_000000000-A3K85_1_1104_22266_14100"); + read1961.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(13); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(30); scores.push_back(25); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(28); scores.push_back(12); scores.push_back(32); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1961.setScores(scores); + rfastqReads.push_back(read1961); + FastqRead read1962; read1962.setName("M00967_44_000000000-A3K85_1_1104_24767_14100"); + read1962.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTGAGCTCCACAATTTTACCGCTGACTTGACATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTACGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); 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+ read1963.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTTGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(35); scores.push_back(36); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(27); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(12); scores.push_back(27); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(27); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(37); scores.push_back(27); scores.push_back(27); read1963.setScores(scores); + rfastqReads.push_back(read1963); + FastqRead read1964; read1964.setName("M00967_44_000000000-A3K85_1_1104_19639_14254"); + read1964.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTACGCTCCCTTTACACCCAGTAATTCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(34); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(35); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(30); scores.push_back(35); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(30); scores.push_back(28); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1964.setScores(scores); + rfastqReads.push_back(read1964); + FastqRead read1965; read1965.setName("M00967_44_000000000-A3K85_1_1104_26260_14274"); + read1965.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); 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scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(31); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1965.setScores(scores); + rfastqReads.push_back(read1965); + FastqRead read1966; read1966.setName("M00967_44_000000000-A3K85_1_1104_11150_14302"); + read1966.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCCCTCAATTTTACCGCTGACTTGGACCTCCGACTGGGCACCCCTTAAACCCAATAAATCCGGATAACGCTCGCATCCTACGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); 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scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(30); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(27); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(31); scores.push_back(30); scores.push_back(38); scores.push_back(13); scores.push_back(32); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(34); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(30); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(25); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(13); read1966.setScores(scores); + rfastqReads.push_back(read1966); + FastqRead read1967; read1967.setName("M00967_44_000000000-A3K85_1_1104_24281_14456"); + read1967.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTCAACCCAATAACTCCGGATACCGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(32); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(29); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1967.setScores(scores); + rfastqReads.push_back(read1967); + FastqRead read1968; read1968.setName("M00967_44_000000000-A3K85_1_1104_27607_14496"); + read1968.setSeq("CCTGTTTGCTACCCACGCTTTCGTGCTTCAGCGTCAGTTAAACCCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCGCCTGCCTCTACTTCACTCAAGCCCCACAGTTTCAAAAGCCGGTCACGGGTTAACCCCATGTATTTCACTTCTGACTTGCAAGGCCGCCTACGCCCCCTTTACACCCAGTAAATCCGGACAACGCTTGCTCCCTCCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(16); scores.push_back(37); scores.push_back(18); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(36); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(16); scores.push_back(37); scores.push_back(38); scores.push_back(16); scores.push_back(29); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(14); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(16); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(31); scores.push_back(15); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(13); scores.push_back(27); scores.push_back(34); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(13); scores.push_back(27); scores.push_back(12); scores.push_back(27); scores.push_back(25); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(36); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(34); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(34); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(34); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(12); scores.push_back(31); scores.push_back(24); scores.push_back(32); scores.push_back(33); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(29); scores.push_back(31); scores.push_back(31); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(30); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(30); scores.push_back(24); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); read1968.setScores(scores); + rfastqReads.push_back(read1968); + FastqRead read1969; read1969.setName("M00967_44_000000000-A3K85_1_1104_4012_14514"); + read1969.setSeq("CCTGTTTGATCCCCGCACTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGCCCGGCAGTTTCAACGGCTGTACGGGGTTGAGCCCCGCAATTTTACCGCTGACTTGGCAGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); 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scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(31); scores.push_back(24); scores.push_back(12); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(35); scores.push_back(28); scores.push_back(32); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(30); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(13); read1969.setScores(scores); + rfastqReads.push_back(read1969); + FastqRead read1970; read1970.setName("M00967_44_000000000-A3K85_1_1104_20546_14532"); + read1970.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGAGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(33); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(28); scores.push_back(29); scores.push_back(29); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(30); scores.push_back(30); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1970.setScores(scores); + rfastqReads.push_back(read1970); + FastqRead read1971; read1971.setName("M00967_44_000000000-A3K85_1_1104_21479_14540"); + read1971.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGGCGGGGTTGAGCCCCCAAATTTTACCCCTGACTTTGCATCCCCCCTGCGCACCCCTTAAACCCAATAAAACCGGATAACGCCCGCATCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(25); scores.push_back(15); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(15); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(15); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(26); scores.push_back(12); read1971.setScores(scores); + rfastqReads.push_back(read1971); + FastqRead read1972; read1972.setName("M00967_44_000000000-A3K85_1_1104_7548_14543"); + read1972.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGCGCCCCGACATTTGACCGCTGACTTAACAGCCCGCCCACGCACCCTTTAAACCCACTAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(28); scores.push_back(35); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(28); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(25); scores.push_back(34); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(25); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(33); scores.push_back(33); scores.push_back(13); read1972.setScores(scores); + rfastqReads.push_back(read1972); + FastqRead read1973; read1973.setName("M00967_44_000000000-A3K85_1_1104_20123_14567"); + read1973.setSeq("CCTGTTTGATACCCACACTTTCGAGCATCAGTGTCAGTTGCAGTCCAGTGAGCTGCCTTCGCAATCGGAGTTCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACCTCTACTGTACTCAAGACTGCCAGTTTCAACTGCAATTTTACGGTTGAGCCGCAAACTTTCACAACTGACTTAACAATCCACCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); 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scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1973.setScores(scores); + rfastqReads.push_back(read1973); + FastqRead read1974; read1974.setName("M00967_44_000000000-A3K85_1_1104_5880_14621"); + read1974.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(20); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(34); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(30); scores.push_back(12); scores.push_back(31); scores.push_back(28); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(33); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(25); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(13); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(24); read1974.setScores(scores); + rfastqReads.push_back(read1974); + FastqRead read1975; read1975.setName("M00967_44_000000000-A3K85_1_1104_18049_14622"); + read1975.setSeq("CCTGTTCGATCCCCGCACTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGAAGGCTGCCTTCGCAATCGGGGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTTCTTCTCGCCCACTCAAGGCCCCCAGTTTCAACGGCCGGACGGGGTTGAGCCCCGAATTTTTACCGCTGACTTAAACGCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCACCG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(28); scores.push_back(35); scores.push_back(30); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(29); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(13); read1975.setScores(scores); + rfastqReads.push_back(read1975); + FastqRead read1976; read1976.setName("M00967_44_000000000-A3K85_1_1104_5899_14629"); + read1976.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGATTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(31); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); 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scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(28); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(28); scores.push_back(12); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(33); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(35); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(28); scores.push_back(13); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(29); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); read1976.setScores(scores); + rfastqReads.push_back(read1976); + FastqRead read1977; read1977.setName("M00967_44_000000000-A3K85_1_1104_28185_14651"); + read1977.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGATAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGGCCGGGGTGGGGCCCGGAGTTTTTCCCCTGGCTTTACAAAACCCCCCCGCACCCCTTTTAACCCAAAAAACCCGGTAAAGCCCCCCACCCCCC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(14); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(25); scores.push_back(29); read1977.setScores(scores); + rfastqReads.push_back(read1977); + FastqRead read1978; read1978.setName("M00967_44_000000000-A3K85_1_1104_25242_14657"); + read1978.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGGTGAGCCTCCCCATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGTTAAAGCCCGCCTCCTCCC"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(19); scores.push_back(37); scores.push_back(20); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(33); scores.push_back(20); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(37); 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scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(13); read1978.setScores(scores); + rfastqReads.push_back(read1978); + FastqRead read1979; read1979.setName("M00967_44_000000000-A3K85_1_1104_27029_14729"); + read1979.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTCATCGTCCAGCAGGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCCTGCCTCTCCGACACTCTAGCCTTACAGTTCCAAATGCAGTCCCGGGGTTGAGCCCCGGGCTTTCACATCTGGCTTGCAGGACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); 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scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(24); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1979.setScores(scores); + rfastqReads.push_back(read1979); + FastqRead read1980; read1980.setName("M00967_44_000000000-A3K85_1_1104_13740_14801"); + read1980.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTCGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCGAGGCCGCCAGTTTCAACGGCAGGCCGGGGTTGGGCCCCGACATTTTACCGCTGACTTAACAGCCCGCCTACCCACCCCTTAAACCCCATAAATCCGGATAACGCTCGCCTCCCCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(34); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(15); scores.push_back(34); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(32); scores.push_back(12); scores.push_back(32); scores.push_back(36); scores.push_back(12); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(12); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(12); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(25); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); read1980.setScores(scores); + rfastqReads.push_back(read1980); + FastqRead read1981; read1981.setName("M00967_44_000000000-A3K85_1_1104_17772_14830"); + read1981.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGAGCCCCCAAATTTGACCGCTGACTTGGCATCCCGCCTGCGCCCCCTTTAAACCCAATAAATCCGGATAACGCCCGCATCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(34); scores.push_back(31); scores.push_back(13); scores.push_back(14); scores.push_back(12); scores.push_back(30); scores.push_back(30); scores.push_back(35); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(24); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(25); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(28); scores.push_back(32); scores.push_back(12); scores.push_back(26); scores.push_back(26); scores.push_back(32); scores.push_back(28); scores.push_back(14); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); read1981.setScores(scores); + rfastqReads.push_back(read1981); + FastqRead read1982; read1982.setName("M00967_44_000000000-A3K85_1_1104_24476_14858"); + read1982.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGCCAGTTTCAACGGCTCGACGGCGTTGAGCACCGCTTTTTTACCGCTGACTTGGCATCCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(29); scores.push_back(32); scores.push_back(30); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(26); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); read1982.setScores(scores); + rfastqReads.push_back(read1982); + FastqRead read1983; read1983.setName("M00967_44_000000000-A3K85_1_1104_14869_14861"); + read1983.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCTGCACTCAAGTTACACAGTTTCCAGAGCAGTCCGGGGGTTGGGCCCCCGCCTTTCACTCCAGACTTGCATCACCGTCTCCGCCCCCTTTACACCCAGTAATTCCGGATAACCCTGGCCCCCTAC"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); 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scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(32); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); read1983.setScores(scores); + rfastqReads.push_back(read1983); + FastqRead read1984; read1984.setName("M00967_44_000000000-A3K85_1_1104_22534_14956"); + read1984.setSeq("CCTGTTCGATACCCACGCTTTCGTGCCTCAGCGTCAGACAGGAGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGCAATATCTATGCATTTCACCGCTACACTGCGCATTCCGCCTACTTCTCTCCCTCTCGAGTTCGCCAGTTTCAACGGCGGGACCGGGTTGTGCCCCGGAATTTTTTCCCCGGCTTGTCAAAACCCCTCCGCCCCCCTTAAAACAAACAAAAACCGGTCACGCCCCCACCCCCCC"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); 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scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(33); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(12); scores.push_back(14); scores.push_back(15); scores.push_back(25); scores.push_back(14); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(12); scores.push_back(25); scores.push_back(15); scores.push_back(15); scores.push_back(24); scores.push_back(15); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(15); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(31); scores.push_back(12); read1984.setScores(scores); + rfastqReads.push_back(read1984); + FastqRead read1985; read1985.setName("M00967_44_000000000-A3K85_1_1104_12713_15087"); + read1985.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(34); scores.push_back(13); scores.push_back(35); scores.push_back(35); scores.push_back(30); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(24); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(26); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(25); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(13); read1986.setScores(scores); + rfastqReads.push_back(read1986); + FastqRead read1987; read1987.setName("M00967_44_000000000-A3K85_1_1104_18431_15143"); + read1987.setSeq("CCTGTTTGCTCCCCACACTTTCGAGCCTCAGCGTCAGTTAAAGCCCAGTTGGCCGCCTTCGCCACCGGTGTTCCTCCGAATATCTACGCATTTCACCGCTACACTCGGAATTCCGCCAACCTCTACTTCACTCAAGAAAGCCAGTTTCAACTGCAGTCTACAGGTTAAGCCCGTAGTTTTCACAGCTGACTTGGCTTCCCGCCTACGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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scores.push_back(35); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(24); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); read1987.setScores(scores); + rfastqReads.push_back(read1987); + FastqRead read1988; read1988.setName("M00967_44_000000000-A3K85_1_1104_10740_15149"); + read1988.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTACGT"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); 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read1988.setScores(scores); + rfastqReads.push_back(read1988); + FastqRead read1989; read1989.setName("M00967_44_000000000-A3K85_1_1104_21420_15173"); + read1989.setSeq("CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTGCAGACCAGAGAGCCGCCTTCGCCACTGGTGTTCTTCCATATATCTACGCATTCCACCGCTACACATGGAGTTCCACTCTCCTCTTCTGCACTCAAGTTCAACAGTTTCTGATGCAATTCTCCGGTTGAGCCGAAGGCTTTCACATCAGACTTATTGAACCGCCTGCACTCGCTTTACGCCCAATAAATCCGGACAACGCTTGCCACCTACG"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); 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scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(27); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(34); scores.push_back(37); scores.push_back(33); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(28); scores.push_back(35); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(30); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1989.setScores(scores); + rfastqReads.push_back(read1989); + FastqRead read1990; read1990.setName("M00967_44_000000000-A3K85_1_1104_19161_15180"); + read1990.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCCGCGCACCCTTTAAACCCAATAAATCCGGATAACGCCCCCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(31); scores.push_back(33); scores.push_back(37); scores.push_back(34); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); 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scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(24); scores.push_back(35); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(25); scores.push_back(31); scores.push_back(32); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(24); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(37); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(25); scores.push_back(33); scores.push_back(13); read1990.setScores(scores); + rfastqReads.push_back(read1990); + FastqRead read1991; read1991.setName("M00967_44_000000000-A3K85_1_1104_26250_15197"); + read1991.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTAGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGAACGTCAGTTTCAACGGCTCGATGGAGTTTAGCCCCCCAATTTTACCGCTTACCTTGCATCCCGCCCACGGACCCCTTTAACCCAATAAATCCCGATAACGCCCGCCTCCCCCGG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(35); scores.push_back(32); scores.push_back(16); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(37); scores.push_back(17); scores.push_back(16); scores.push_back(16); scores.push_back(14); scores.push_back(15); scores.push_back(14); scores.push_back(32); 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scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); read1991.setScores(scores); + rfastqReads.push_back(read1991); + FastqRead read1992; read1992.setName("M00967_44_000000000-A3K85_1_1104_8064_15199"); + read1992.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCTAGGACACCAGTTTCAACGGCAGGTCGGGGTTGGGCCCCGCAATTTTACCGCTGACTTGGCATCCCGCCTGCGCCCCCTTTCAACCCAACAAATCCGGATAAAGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); 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scores.push_back(24); scores.push_back(14); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(13); scores.push_back(25); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(29); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(31); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(25); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(25); scores.push_back(25); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(25); scores.push_back(13); scores.push_back(29); scores.push_back(12); scores.push_back(24); scores.push_back(25); scores.push_back(24); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); read1992.setScores(scores); + rfastqReads.push_back(read1992); + FastqRead read1993; read1993.setName("M00967_44_000000000-A3K85_1_1104_3441_15248"); + read1993.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTTCAGTCCAGCAGGCCGCCTTCGCCGCCGGTGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCCTGCCCCTCCTGTACTCTAGTTACACAGTTTCCAAAGCAGTCCCGGGGTTGGGCCCCGGGCTTTCACTTCAGACTTACATAACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(39); scores.push_back(16); scores.push_back(16); scores.push_back(30); scores.push_back(36); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(14); scores.push_back(31); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(18); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(30); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(35); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(36); scores.push_back(12); scores.push_back(36); scores.push_back(35); scores.push_back(32); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(35); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(30); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(35); read1993.setScores(scores); + rfastqReads.push_back(read1993); + FastqRead read1994; read1994.setName("M00967_44_000000000-A3K85_1_1104_15936_15317"); + read1994.setSeq("CCTGTTCGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGGGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCCCACTCAAGACAATCAGTTTCAACGGCGGGAAGAGGGTGAGCCTCTCCATTTTACCCCCGACTTAACTGGCCGCCTACGCACCACTTTAAACCCATAAAACCCGATAAAACTCCCATCCCCCG"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(13); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(24); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(24); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(25); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(13); scores.push_back(25); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(26); scores.push_back(33); scores.push_back(36); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); read1994.setScores(scores); + rfastqReads.push_back(read1994); + FastqRead read1995; read1995.setName("M00967_44_000000000-A3K85_1_1104_24379_15369"); + read1995.setSeq("CCTGTTCGATACCCACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCCTACTTCTCGCGCACTCAAGGCTCCCAGTTTCAACGGCGGAACGGGGTTGAGCCCCGCGCTTTGACCGCTGACTTGAGAGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCCTCCTCCGT"); + scores.clear(); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(36); 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scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(26); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(35); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(34); scores.push_back(28); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(13); scores.push_back(25); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(13); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(35); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(32); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(13); read1995.setScores(scores); + rfastqReads.push_back(read1995); + FastqRead read1996; read1996.setName("M00967_44_000000000-A3K85_1_1104_9205_15423"); + read1996.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAAATTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTCGCATCCTCCG"); + scores.clear(); scores.push_back(33); scores.push_back(34); scores.push_back(33); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(20); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(35); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(30); scores.push_back(38); scores.push_back(13); scores.push_back(26); scores.push_back(13); scores.push_back(13); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(33); scores.push_back(14); scores.push_back(34); scores.push_back(38); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(37); scores.push_back(30); scores.push_back(34); scores.push_back(34); scores.push_back(12); scores.push_back(32); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(30); scores.push_back(35); scores.push_back(38); scores.push_back(13); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(25); scores.push_back(35); scores.push_back(13); scores.push_back(32); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(31); scores.push_back(32); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(26); scores.push_back(31); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(33); scores.push_back(13); read1996.setScores(scores); + rfastqReads.push_back(read1996); + FastqRead read1997; read1997.setName("M00967_44_000000000-A3K85_1_1104_4689_15461"); + read1997.setSeq("CCTGTTCGATACCCACACTTTCGTGCATGAGCGTCAGTTGAGCGCCGGTATGCTGCCTTCGCAATCGGAGTTCTGCGTGATATCTATGCATTTCACCGCTACACCACGCATTCCGCATACTTCTCGCTCACTCAAGAAAACCAGTTTCAACGGCTCGAAGAGGTTGAGCCTCTCAATTTTACCGCTGACTTGATCTTCCGCCTGCGCACCCTTTTAACCCAATAAATACGGATAAAGCCCGCATCCCCCGT"); + scores.clear(); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(32); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(33); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(30); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(25); scores.push_back(34); scores.push_back(32); scores.push_back(37); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(15); scores.push_back(38); scores.push_back(14); scores.push_back(26); scores.push_back(25); scores.push_back(25); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(38); scores.push_back(33); scores.push_back(33); scores.push_back(24); scores.push_back(15); scores.push_back(34); scores.push_back(30); scores.push_back(33); scores.push_back(34); scores.push_back(35); scores.push_back(14); scores.push_back(15); scores.push_back(26); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(26); scores.push_back(26); scores.push_back(37); scores.push_back(15); scores.push_back(26); scores.push_back(13); scores.push_back(34); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(33); scores.push_back(33); scores.push_back(35); scores.push_back(13); scores.push_back(24); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(36); scores.push_back(32); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(13); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(13); scores.push_back(13); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(13); scores.push_back(31); scores.push_back(33); scores.push_back(13); scores.push_back(24); scores.push_back(32); scores.push_back(12); scores.push_back(24); read1997.setScores(scores); + rfastqReads.push_back(read1997); + FastqRead read1998; read1998.setName("M00967_44_000000000-A3K85_1_1104_25054_15469"); + read1998.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTTCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCCCTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATACCGCTTGCCCCCTACG"); + scores.clear(); scores.push_back(18); scores.push_back(32); scores.push_back(32); scores.push_back(33); scores.push_back(32); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(34); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(36); scores.push_back(36); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(34); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(14); scores.push_back(36); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(38); scores.push_back(32); scores.push_back(12); scores.push_back(35); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(14); scores.push_back(24); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(14); scores.push_back(33); scores.push_back(37); scores.push_back(14); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(33); scores.push_back(37); scores.push_back(13); scores.push_back(35); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(34); scores.push_back(12); scores.push_back(13); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(26); scores.push_back(36); scores.push_back(37); scores.push_back(13); read1998.setScores(scores); + rfastqReads.push_back(read1998); + FastqRead read1999; read1999.setName("M00967_44_000000000-A3K85_1_1104_11182_15477"); + read1999.setSeq("CCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGTTACGGTCCAGTAAGCCGCCTTCGCCACCGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCCCTCCCGCACTCTAGTCCGCCAGTTTCCAAAGCAGTTCCGCAGTTAAGCTGCGGCATTTCACTCCAGACTTGGCGCACCGTCTACGCTCCCTTTACACCCAGTAAATCCGGATAACGCCCGCATCCTCCG"); + scores.clear(); scores.push_back(35); scores.push_back(35); scores.push_back(34); scores.push_back(35); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(36); scores.push_back(36); scores.push_back(38); scores.push_back(39); scores.push_back(37); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(18); scores.push_back(36); scores.push_back(34); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(32); scores.push_back(33); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(32); scores.push_back(37); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(36); scores.push_back(39); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(35); scores.push_back(39); scores.push_back(33); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(15); scores.push_back(34); scores.push_back(37); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(36); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(33); scores.push_back(33); scores.push_back(15); scores.push_back(36); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(37); scores.push_back(12); scores.push_back(36); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(34); scores.push_back(24); scores.push_back(24); scores.push_back(24); scores.push_back(13); scores.push_back(37); scores.push_back(30); scores.push_back(33); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(13); scores.push_back(24); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(15); scores.push_back(15); scores.push_back(13); scores.push_back(25); scores.push_back(13); scores.push_back(25); scores.push_back(32); scores.push_back(33); scores.push_back(15); scores.push_back(13); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(13); scores.push_back(12); scores.push_back(33); scores.push_back(15); scores.push_back(25); scores.push_back(33); scores.push_back(13); read1999.setScores(scores); + rfastqReads.push_back(read1999); +} +/*************************************************************************/ diff --git a/TestMothur/fastqdataset.h b/TestMothur/fastqdataset.h new file mode 100644 index 00000000..da436cd6 --- /dev/null +++ b/TestMothur/fastqdataset.h @@ -0,0 +1,34 @@ +// +// fastqdataset.h +// Mothur +// +// Created by Sarah Westcott on 3/31/16. +// Copyright (c) 2016 Schloss Lab. All rights reserved. +// + +#ifndef __Mothur__fastqdataset__ +#define __Mothur__fastqdataset__ + +#include "fastqread.h" + +class TestFastqDataSet { + +public: + + TestFastqDataSet(); + ~TestFastqDataSet() {} + vector getForwardFastq() { fillForwardFastq(); return ffastqReads; } + vector getReverseFastq() { fillReverseFastq(); return rfastqReads; } + vector getSubsetFRFastq(int); + +private: + MothurOut* m; + vector ffastqReads; //F8D0 Sample (first 2000 reads) + vector rfastqReads; //F8D0 Sample (first 2000 reads) + void fillForwardFastq(); + void fillReverseFastq(); + +}; + + +#endif /* defined(__Mothur__fastqdataset__) */ diff --git a/TestMothur/testcontainers/testfastqread.cpp b/TestMothur/testcontainers/testfastqread.cpp index d3cda5f4..5184dd30 100644 --- a/TestMothur/testcontainers/testfastqread.cpp +++ b/TestMothur/testcontainers/testfastqread.cpp @@ -6,4 +6,60 @@ // Copyright (c) 2016 Schloss Lab. All rights reserved. // +#include "catch.hpp" #include "testfastqread.h" +#include "dataset.h" + +/**************************************************************************************************/ +TestFastqRead::TestFastqRead() { //setup + m = MothurOut::getInstance(); + TestDataSet data; + reads = data.getForwardFastq(); + filenames = data.getSubsetFRFastq(100); +} +/**************************************************************************************************/ +TestFastqRead::~TestFastqRead() { + for (int i = 0; i < filenames.size(); i++) { m->mothurRemove(filenames[i]); } + //teardown +} +/**************************************************************************************************/ + +TEST_CASE("Testing FastqRead Class") { + TestFastqRead testFastq; + + SECTION("Testing (Sequence, Quality) Constructor ") { + INFO("Using ATGCGTCATC & 40 39 38 37 36 35 34 33 32 31") // Only appears on a FAIL + + vector scores; for (int i = 31; i < 41; i++) { scores.push_back(i); } + Sequence seq("testSeq", "ATGCGTCATC"); + QualityScores qual("testSeq", scores); + FastqRead read(seq, qual); + + CAPTURE(read.getSeq()); // Displays this variable on a FAIL + + CHECK(read.getSeq() == "ATGCGTCATC"); + + CAPTURE(read.getScores()[0]); // Displays this variable on a FAIL + + CHECK(read.getScores()[0] == 31); + } + + SECTION("Testing Fastq Read From File Constructor ") { + INFO("Using first first read in F8D0") // Only appears on a FAIL + + ifstream in; bool ignore; string format = "illumina1.8+"; + testFastq.m->openInputFile(testFastq.filenames[0], in); + + FastqRead read(in, ignore, format); + + CAPTURE(read.getSeq()); // Displays this variable on a FAIL + + CHECK(read.getSeq() == (testFastq.reads[0]).getSeq()); + + CAPTURE(read.getScores()[0]); // Displays this variable on a FAIL + + CHECK(read.getScores()[0] == testFastq.reads[0].getScores()[0]); + } + +} +/**************************************************************************************************/ diff --git a/TestMothur/testcontainers/testfastqread.h b/TestMothur/testcontainers/testfastqread.h index b7b0deb6..fbaf0b3d 100644 --- a/TestMothur/testcontainers/testfastqread.h +++ b/TestMothur/testcontainers/testfastqread.h @@ -14,8 +14,17 @@ class TestFastqRead : public FastqRead { public: + TestFastqRead(); + ~TestFastqRead(); using FastqRead::convertQual; + + MothurOut* m; + vector reads; + vector filenames; + + + }; diff --git a/source/commands/screenseqscommand.cpp b/source/commands/screenseqscommand.cpp index 832b21e5..ea1388c7 100644 --- a/source/commands/screenseqscommand.cpp +++ b/source/commands/screenseqscommand.cpp @@ -2127,7 +2127,7 @@ int ScreenSeqsCommand::screenCountFile(map badSeqNames){ if (m->control_pressed) { goodCountOut.close(); in.close(); m->mothurRemove(goodCountFile); return 0; } in >> name; m->gobble(in); - in >> thisTotal; + in >> thisTotal; m->gobble(in); if (pieces.size() > 2) { rest = m->getline(in); m->gobble(in); } it = badSeqNames.find(name); diff --git a/source/datastructures/groupmap.cpp b/source/datastructures/groupmap.cpp index 4ee8c21d..ef39321d 100644 --- a/source/datastructures/groupmap.cpp +++ b/source/datastructures/groupmap.cpp @@ -36,6 +36,7 @@ int GroupMap::addSeq(string name, string group) { groupmap[name] = group; //store data in map seqsPerGroup[group]++; //increment number of seqs in that group } + return error; } diff --git a/source/vsearchfileparser.h b/source/vsearchfileparser.h index 6a3b0a4c..3327da77 100644 --- a/source/vsearchfileparser.h +++ b/source/vsearchfileparser.h @@ -21,9 +21,9 @@ class VsearchFileParser { #endif public: + VsearchFileParser(); VsearchFileParser(string f); //fastafile VsearchFileParser(string f, string n, string format); //fastafile, name or count file, format("name" or "count") - VsearchFileParser(); ~VsearchFileParser(){} string getVsearchFile(); //creates vsearch formatted file. degapped, abundance appended, and sorted. From 186fdd3547fd7ad3e521c8a093165a670e11eca2 Mon Sep 17 00:00:00 2001 From: Sarah Westcott Date: Tue, 5 Apr 2016 09:08:17 -0400 Subject: [PATCH 135/135] Clears testing vectors Avoids bad_allocs due to push_back error --- TestMothur/dataset.cpp | 5 ++++- TestMothur/fastqdataset.cpp | 2 ++ source/commandfactory.cpp | 2 +- source/datastructures/referencedb.cpp | 2 +- source/mothurout.cpp | 2 +- 5 files changed, 9 insertions(+), 4 deletions(-) diff --git a/TestMothur/dataset.cpp b/TestMothur/dataset.cpp index a38b3c5d..a539705e 100755 --- a/TestMothur/dataset.cpp +++ b/TestMothur/dataset.cpp @@ -79,7 +79,7 @@ vector TestDataSet::getSubsetFNGFiles(int numSeqs) { void TestDataSet::fillSeqs() { //fill seqs with final.fasta - + seqs.clear(); string name = "GQY1XT001CFHYQ"; string align = "T-C--T-G--GA-A-A-C-T-G-T--GT-A-A-C--T-G-G-A-G-T-G-C-AG-GA-G-A-G-G-C-A--GG-C-GG-A-ATT-C-C-T-A-GT-GT-A-G-CGGT-G-AAA--TG-C-GT-AG--AT-A-TT-A-G-G-AG-G-A-AC-A-CC-AG-T-G-GC-GAA-GG-CGG-C-CT-G--CTGG-AC-TG-T-A-ACT--GACG-TTG-A-GG--C-T-CG-AAA-G-C-G-TGGG-G--AGC-A-AA-CA-GG-ATTAG-ATA-CCCT-GGTA-GT-C-CA-C-G-CCG-T-AAAC-G-A-TG-AT--TA-C-T-A-G-GT-G-T-G--G-G-T-G-G--G---T----AT-G-----GAC-C-C-A-T-C-G-G-T-G-C-C--GC--A-G-C-A-AA-C-G-C-A-G-TAA-G-TAA-TCC-ACC-T-G-GGG-AG-TA--CG-TT-C-G-C-A-AGAATGAA"; Sequence newSeq1(name, align); @@ -180932,6 +180932,9 @@ groupMap[name] = group; void TestDataSet::fillLookup() { vector groups; + m->sharedBinLabelsInFile.clear(); + for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } + lookup.clear(); m->sharedBinLabelsInFile.push_back("Otu0001"); m->sharedBinLabelsInFile.push_back("Otu0002"); m->sharedBinLabelsInFile.push_back("Otu0003"); diff --git a/TestMothur/fastqdataset.cpp b/TestMothur/fastqdataset.cpp index e8e1e37b..e789ae19 100644 --- a/TestMothur/fastqdataset.cpp +++ b/TestMothur/fastqdataset.cpp @@ -30,6 +30,7 @@ vector TestFastqDataSet::getSubsetFRFastq(int numSeqs) { /***********************************************************************/ void TestFastqDataSet::fillForwardFastq() { vector scores; + ffastqReads.clear(); FastqRead read1; read1.setName("M00967_44_000000000-A3K85_1_1101_16426_1716"); read1.setSeq("TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACTCTCAAGTCAGCGGTCAAATCGCGGGGCTCAACCCCGTTCCGCCGTTGAAACTGGGAGCCTTGAGTGCGCGAGAAGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCCTACCGGCGCGCAACTGACGCTCATGCACGAAAGCGTGGGTATCGAACAG"); scores.clear(); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(34); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(37); scores.push_back(35); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(37); scores.push_back(39); scores.push_back(39); scores.push_back(38); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(38); scores.push_back(38); scores.push_back(34); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(38); scores.push_back(33); scores.push_back(34); scores.push_back(38); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(35); scores.push_back(35); scores.push_back(36); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(12); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(33); scores.push_back(15); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(24); scores.push_back(25); scores.push_back(33); scores.push_back(35); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(13); scores.push_back(13); scores.push_back(26); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(36); scores.push_back(35); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(37); scores.push_back(32); scores.push_back(35); scores.push_back(32); scores.push_back(37); scores.push_back(13); scores.push_back(33); scores.push_back(33); scores.push_back(26); scores.push_back(32); scores.push_back(36); scores.push_back(37); scores.push_back(13); scores.push_back(34); scores.push_back(37); read1.setScores(scores); @@ -8032,6 +8033,7 @@ void TestFastqDataSet::fillForwardFastq() { void TestFastqDataSet::fillReverseFastq() { vector scores; + rfastqReads.clear(); FastqRead read1; read1.setName("M00967_44_000000000-A3K85_1_1101_16426_1716"); read1.setSeq("CCTGTTCGATACACACGCTTTCGTGCATGAGCGTCAGTTGCGCGCCGGTAGGCTGCCTTCGCAATAGGAGTTATGCGTGATATCTATGCATTTCACCGCTACACAACGCATTCCGCCTAATTATTGCGAAATAAAGGCTCCCAGTTTCAAAGGCGGAACGGGGTTGAGGCCCGGGATTTTACCGCTGAATTGAGAGTACGACTGGGGACTCTTTAAAGTCAATAAATCTGGATAAAGGTGGCATACTCAGT"); scores.clear(); scores.push_back(16); scores.push_back(16); scores.push_back(29); scores.push_back(32); scores.push_back(16); scores.push_back(31); scores.push_back(18); scores.push_back(29); scores.push_back(16); scores.push_back(31); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(16); scores.push_back(32); scores.push_back(16); scores.push_back(32); scores.push_back(15); scores.push_back(32); scores.push_back(16); scores.push_back(33); scores.push_back(33); scores.push_back(37); scores.push_back(15); scores.push_back(32); scores.push_back(38); scores.push_back(39); scores.push_back(34); scores.push_back(37); scores.push_back(16); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(30); scores.push_back(32); scores.push_back(38); scores.push_back(37); scores.push_back(33); scores.push_back(16); scores.push_back(14); scores.push_back(32); scores.push_back(32); scores.push_back(14); scores.push_back(14); scores.push_back(32); scores.push_back(36); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(30); scores.push_back(16); scores.push_back(33); scores.push_back(37); scores.push_back(33); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(33); scores.push_back(38); scores.push_back(36); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(16); scores.push_back(16); scores.push_back(33); scores.push_back(16); scores.push_back(15); scores.push_back(33); scores.push_back(38); scores.push_back(17); scores.push_back(31); scores.push_back(38); scores.push_back(16); scores.push_back(36); scores.push_back(36); scores.push_back(37); scores.push_back(30); scores.push_back(36); scores.push_back(33); scores.push_back(17); scores.push_back(16); scores.push_back(33); scores.push_back(17); scores.push_back(37); scores.push_back(37); scores.push_back(16); scores.push_back(17); scores.push_back(17); scores.push_back(17); scores.push_back(35); scores.push_back(17); scores.push_back(17); scores.push_back(33); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(36); scores.push_back(30); scores.push_back(29); scores.push_back(35); scores.push_back(37); scores.push_back(16); scores.push_back(14); scores.push_back(14); scores.push_back(29); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(34); scores.push_back(17); scores.push_back(17); scores.push_back(15); scores.push_back(14); scores.push_back(14); scores.push_back(27); scores.push_back(14); scores.push_back(16); scores.push_back(30); scores.push_back(27); scores.push_back(16); scores.push_back(27); scores.push_back(16); scores.push_back(30); scores.push_back(16); scores.push_back(30); scores.push_back(14); scores.push_back(29); scores.push_back(27); scores.push_back(27); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(16); scores.push_back(13); scores.push_back(16); scores.push_back(27); scores.push_back(29); scores.push_back(34); scores.push_back(15); scores.push_back(27); scores.push_back(14); scores.push_back(35); scores.push_back(38); scores.push_back(15); scores.push_back(35); scores.push_back(15); scores.push_back(15); scores.push_back(27); scores.push_back(34); scores.push_back(27); scores.push_back(32); scores.push_back(34); scores.push_back(30); scores.push_back(12); scores.push_back(12); scores.push_back(13); scores.push_back(13); scores.push_back(34); scores.push_back(32); scores.push_back(12); scores.push_back(31); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(24); scores.push_back(13); scores.push_back(26); scores.push_back(26); scores.push_back(12); scores.push_back(24); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(37); scores.push_back(14); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(12); scores.push_back(26); scores.push_back(32); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(14); scores.push_back(26); scores.push_back(24); scores.push_back(33); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(33); scores.push_back(14); scores.push_back(24); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(14); scores.push_back(14); scores.push_back(26); scores.push_back(14); scores.push_back(12); scores.push_back(12); scores.push_back(12); scores.push_back(24); scores.push_back(14); scores.push_back(14); scores.push_back(24); scores.push_back(24); scores.push_back(26); scores.push_back(14); scores.push_back(24); read1.setScores(scores); diff --git a/source/commandfactory.cpp b/source/commandfactory.cpp index d95543e9..eab30c4a 100644 --- a/source/commandfactory.cpp +++ b/source/commandfactory.cpp @@ -155,7 +155,7 @@ #include "biominfocommand.h" //needed for testing project -CommandFactory* CommandFactory::_uniqueInstance; +//CommandFactory* CommandFactory::_uniqueInstance; /*******************************************************/ diff --git a/source/datastructures/referencedb.cpp b/source/datastructures/referencedb.cpp index 17de7e4c..249d2db7 100644 --- a/source/datastructures/referencedb.cpp +++ b/source/datastructures/referencedb.cpp @@ -10,7 +10,7 @@ #include "referencedb.h" //needed for testing project -ReferenceDB* ReferenceDB::myInstance; +//ReferenceDB* ReferenceDB::myInstance; /******************************************************/ ReferenceDB* ReferenceDB::getInstance() { diff --git a/source/mothurout.cpp b/source/mothurout.cpp index 8c54d32d..5ff8ac73 100644 --- a/source/mothurout.cpp +++ b/source/mothurout.cpp @@ -10,7 +10,7 @@ #include "mothurout.h" //needed for testing project -MothurOut* MothurOut::_uniqueInstance; +//MothurOut* MothurOut::_uniqueInstance; /******************************************************/ MothurOut* MothurOut::getInstance() {